Multiple sequence alignment - TraesCS4A01G487100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G487100 chr4A 100.000 3575 0 0 1 3575 739789415 739792989 0.000000e+00 6602.0
1 TraesCS4A01G487100 chr4A 97.256 1166 16 5 412 1561 739694231 739693066 0.000000e+00 1962.0
2 TraesCS4A01G487100 chr4A 96.741 1166 22 5 412 1561 742088239 742087074 0.000000e+00 1929.0
3 TraesCS4A01G487100 chr4A 79.785 465 57 20 2855 3303 739661467 739661910 1.610000e-78 303.0
4 TraesCS4A01G487100 chr4A 79.614 466 56 22 2855 3303 742068246 742068689 7.500000e-77 298.0
5 TraesCS4A01G487100 chr4A 81.491 389 29 17 2857 3230 740009540 740009180 2.720000e-71 279.0
6 TraesCS4A01G487100 chr4A 83.333 300 15 7 509 784 739695106 739694818 9.910000e-61 244.0
7 TraesCS4A01G487100 chr4A 79.803 406 27 14 405 784 742089201 742088825 9.910000e-61 244.0
8 TraesCS4A01G487100 chr4A 83.333 288 20 18 2957 3223 741782054 741781774 1.280000e-59 241.0
9 TraesCS4A01G487100 chr4A 92.466 146 11 0 1657 1802 739693065 739692920 3.620000e-50 209.0
10 TraesCS4A01G487100 chr4A 92.466 146 11 0 1657 1802 742087073 742086928 3.620000e-50 209.0
11 TraesCS4A01G487100 chr4A 96.907 97 3 0 1801 1897 739692662 739692566 2.860000e-36 163.0
12 TraesCS4A01G487100 chr4A 95.876 97 4 0 1801 1897 742086670 742086574 1.330000e-34 158.0
13 TraesCS4A01G487100 chr4A 90.566 106 9 1 183 287 739698018 739697913 4.810000e-29 139.0
14 TraesCS4A01G487100 chr4A 90.566 106 9 1 183 287 742092034 742091929 4.810000e-29 139.0
15 TraesCS4A01G487100 chr4A 95.161 62 3 0 3343 3404 19517440 19517501 8.170000e-17 99.0
16 TraesCS4A01G487100 chr4A 92.308 65 4 1 124 188 739698139 739698076 1.370000e-14 91.6
17 TraesCS4A01G487100 chr4A 92.308 65 4 1 124 188 742092155 742092092 1.370000e-14 91.6
18 TraesCS4A01G487100 chr4A 90.769 65 5 1 124 188 733964513 733964576 6.360000e-13 86.1
19 TraesCS4A01G487100 chr7A 91.695 1457 86 13 1801 3228 2607888 2606438 0.000000e+00 1988.0
20 TraesCS4A01G487100 chr7A 92.882 576 41 0 1227 1802 2608741 2608166 0.000000e+00 837.0
21 TraesCS4A01G487100 chr7A 86.355 513 32 14 318 806 2610127 2609629 3.160000e-145 525.0
22 TraesCS4A01G487100 chr7A 86.126 382 36 10 2855 3223 2665372 2664995 2.590000e-106 396.0
23 TraesCS4A01G487100 chr7A 85.993 307 31 2 601 901 2935400 2935700 5.760000e-83 318.0
24 TraesCS4A01G487100 chr7A 95.385 130 5 1 467 595 2933477 2933606 4.680000e-49 206.0
25 TraesCS4A01G487100 chr7A 94.118 85 5 0 203 287 2953852 2953768 2.900000e-26 130.0
26 TraesCS4A01G487100 chr7A 85.714 77 7 4 318 394 2953606 2953534 1.060000e-10 78.7
27 TraesCS4A01G487100 chr7D 94.118 595 35 0 1801 2395 3912543 3911949 0.000000e+00 905.0
28 TraesCS4A01G487100 chr7D 83.333 348 32 13 2884 3223 2886543 2886214 7.500000e-77 298.0
29 TraesCS4A01G487100 chr7D 90.055 181 16 1 3395 3575 72097845 72098023 2.150000e-57 233.0
30 TraesCS4A01G487100 chr7D 88.950 181 19 1 3395 3575 46984555 46984734 4.650000e-54 222.0
31 TraesCS4A01G487100 chr7D 96.667 60 2 0 3345 3404 72097742 72097801 2.270000e-17 100.0
32 TraesCS4A01G487100 chr7D 95.082 61 3 0 3344 3404 69147214 69147154 2.940000e-16 97.1
33 TraesCS4A01G487100 chr2B 90.608 181 17 0 3395 3575 713941616 713941796 1.280000e-59 241.0
34 TraesCS4A01G487100 chr6A 89.944 179 16 1 3397 3575 605143912 605144088 2.780000e-56 230.0
35 TraesCS4A01G487100 chr3D 89.385 179 19 0 3397 3575 89923783 89923961 3.590000e-55 226.0
36 TraesCS4A01G487100 chr3D 87.845 181 22 0 3395 3575 467570272 467570452 2.800000e-51 213.0
37 TraesCS4A01G487100 chr7B 88.398 181 21 0 3395 3575 528261501 528261321 6.010000e-53 219.0
38 TraesCS4A01G487100 chr7B 87.293 181 23 0 3395 3575 616714591 616714411 1.300000e-49 207.0
39 TraesCS4A01G487100 chr2D 88.398 181 19 1 3395 3575 574483083 574483261 2.160000e-52 217.0
40 TraesCS4A01G487100 chr2D 90.588 85 8 0 1305 1389 8666361 8666445 2.920000e-21 113.0
41 TraesCS4A01G487100 chr2D 95.161 62 3 0 3343 3404 387199856 387199795 8.170000e-17 99.0
42 TraesCS4A01G487100 chr2D 93.651 63 4 0 3340 3402 574482975 574483037 1.060000e-15 95.3
43 TraesCS4A01G487100 chr1D 85.816 141 20 0 1261 1401 416127188 416127328 2.220000e-32 150.0
44 TraesCS4A01G487100 chr1D 95.161 62 3 0 3343 3404 262110089 262110150 8.170000e-17 99.0
45 TraesCS4A01G487100 chr1D 93.548 62 4 0 3343 3404 424462231 424462170 3.800000e-15 93.5
46 TraesCS4A01G487100 chr3B 85.841 113 16 0 1261 1373 16055768 16055880 1.740000e-23 121.0
47 TraesCS4A01G487100 chr5A 95.161 62 3 0 3343 3404 670024166 670024227 8.170000e-17 99.0
48 TraesCS4A01G487100 chr5A 93.548 62 4 0 3343 3404 514419579 514419518 3.800000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G487100 chr4A 739789415 739792989 3574 False 6602.000000 6602 100.000000 1 3575 1 chr4A.!!$F4 3574
1 TraesCS4A01G487100 chr4A 739692566 739698139 5573 True 468.100000 1962 92.139333 124 1897 6 chr4A.!!$R3 1773
2 TraesCS4A01G487100 chr4A 742086574 742092155 5581 True 461.766667 1929 91.293333 124 1897 6 chr4A.!!$R4 1773
3 TraesCS4A01G487100 chr7A 2606438 2610127 3689 True 1116.666667 1988 90.310667 318 3228 3 chr7A.!!$R2 2910
4 TraesCS4A01G487100 chr7A 2933477 2935700 2223 False 262.000000 318 90.689000 467 901 2 chr7A.!!$F1 434
5 TraesCS4A01G487100 chr7D 3911949 3912543 594 True 905.000000 905 94.118000 1801 2395 1 chr7D.!!$R2 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.034896 TGTCTTTTGAGACGAGGGCC 59.965 55.0 0.0 0.0 41.43 5.80 F
1390 9991 0.102300 CTCACGGACGCCATGTATCA 59.898 55.0 0.0 0.0 0.00 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 10002 0.107897 TAGTTGAACGCGCCCATCAT 60.108 50.0 5.73 0.0 0.00 2.45 R
3253 12163 0.028902 GTTGTGAACAGAACCACGCC 59.971 55.0 3.90 0.0 36.15 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.982091 GGAGATCCATTGATGATTATGATGAT 57.018 34.615 0.00 0.00 35.64 2.45
26 27 8.841300 GGAGATCCATTGATGATTATGATGATG 58.159 37.037 0.00 0.00 35.64 3.07
27 28 9.614792 GAGATCCATTGATGATTATGATGATGA 57.385 33.333 0.00 0.00 0.00 2.92
30 31 9.920946 ATCCATTGATGATTATGATGATGATGA 57.079 29.630 0.00 0.00 0.00 2.92
31 32 9.174166 TCCATTGATGATTATGATGATGATGAC 57.826 33.333 0.00 0.00 0.00 3.06
32 33 8.122952 CCATTGATGATTATGATGATGATGACG 58.877 37.037 0.00 0.00 0.00 4.35
33 34 8.879759 CATTGATGATTATGATGATGATGACGA 58.120 33.333 0.00 0.00 0.00 4.20
34 35 9.614792 ATTGATGATTATGATGATGATGACGAT 57.385 29.630 0.00 0.00 0.00 3.73
35 36 8.420374 TGATGATTATGATGATGATGACGATG 57.580 34.615 0.00 0.00 0.00 3.84
36 37 8.255206 TGATGATTATGATGATGATGACGATGA 58.745 33.333 0.00 0.00 0.00 2.92
37 38 9.262358 GATGATTATGATGATGATGACGATGAT 57.738 33.333 0.00 0.00 0.00 2.45
38 39 8.420374 TGATTATGATGATGATGACGATGATG 57.580 34.615 0.00 0.00 0.00 3.07
39 40 8.255206 TGATTATGATGATGATGACGATGATGA 58.745 33.333 0.00 0.00 0.00 2.92
40 41 9.262358 GATTATGATGATGATGACGATGATGAT 57.738 33.333 0.00 0.00 0.00 2.45
41 42 6.910536 ATGATGATGATGACGATGATGATG 57.089 37.500 0.00 0.00 0.00 3.07
42 43 6.032956 TGATGATGATGACGATGATGATGA 57.967 37.500 0.00 0.00 0.00 2.92
43 44 6.640518 TGATGATGATGACGATGATGATGAT 58.359 36.000 0.00 0.00 0.00 2.45
44 45 6.535150 TGATGATGATGACGATGATGATGATG 59.465 38.462 0.00 0.00 0.00 3.07
45 46 6.032956 TGATGATGACGATGATGATGATGA 57.967 37.500 0.00 0.00 0.00 2.92
46 47 6.640518 TGATGATGACGATGATGATGATGAT 58.359 36.000 0.00 0.00 0.00 2.45
47 48 6.535150 TGATGATGACGATGATGATGATGATG 59.465 38.462 0.00 0.00 0.00 3.07
48 49 5.175859 TGATGACGATGATGATGATGATGG 58.824 41.667 0.00 0.00 0.00 3.51
49 50 4.612264 TGACGATGATGATGATGATGGT 57.388 40.909 0.00 0.00 0.00 3.55
50 51 5.726980 TGACGATGATGATGATGATGGTA 57.273 39.130 0.00 0.00 0.00 3.25
51 52 6.290294 TGACGATGATGATGATGATGGTAT 57.710 37.500 0.00 0.00 0.00 2.73
52 53 6.704310 TGACGATGATGATGATGATGGTATT 58.296 36.000 0.00 0.00 0.00 1.89
53 54 7.839907 TGACGATGATGATGATGATGGTATTA 58.160 34.615 0.00 0.00 0.00 0.98
54 55 8.313292 TGACGATGATGATGATGATGGTATTAA 58.687 33.333 0.00 0.00 0.00 1.40
55 56 9.322773 GACGATGATGATGATGATGGTATTAAT 57.677 33.333 0.00 0.00 0.00 1.40
56 57 9.676861 ACGATGATGATGATGATGGTATTAATT 57.323 29.630 0.00 0.00 0.00 1.40
81 82 7.033530 ACTATATCTGTCTTTTGAGACGAGG 57.966 40.000 0.00 0.00 41.43 4.63
82 83 3.601443 ATCTGTCTTTTGAGACGAGGG 57.399 47.619 0.00 0.00 41.43 4.30
83 84 1.000955 TCTGTCTTTTGAGACGAGGGC 59.999 52.381 0.00 0.00 41.43 5.19
84 85 0.034896 TGTCTTTTGAGACGAGGGCC 59.965 55.000 0.00 0.00 41.43 5.80
85 86 0.321996 GTCTTTTGAGACGAGGGCCT 59.678 55.000 5.25 5.25 0.00 5.19
86 87 0.321671 TCTTTTGAGACGAGGGCCTG 59.678 55.000 12.95 6.05 0.00 4.85
87 88 0.674895 CTTTTGAGACGAGGGCCTGG 60.675 60.000 12.95 13.93 0.00 4.45
88 89 1.125093 TTTTGAGACGAGGGCCTGGA 61.125 55.000 23.31 0.00 0.00 3.86
89 90 0.909610 TTTGAGACGAGGGCCTGGAT 60.910 55.000 23.31 10.10 0.00 3.41
90 91 0.909610 TTGAGACGAGGGCCTGGATT 60.910 55.000 23.31 9.34 0.00 3.01
91 92 1.144936 GAGACGAGGGCCTGGATTG 59.855 63.158 23.31 3.71 0.00 2.67
92 93 2.514824 GACGAGGGCCTGGATTGC 60.515 66.667 23.31 0.00 0.00 3.56
93 94 3.329542 GACGAGGGCCTGGATTGCA 62.330 63.158 23.31 0.00 0.00 4.08
94 95 2.045045 CGAGGGCCTGGATTGCAA 60.045 61.111 12.95 0.00 0.00 4.08
95 96 1.678635 CGAGGGCCTGGATTGCAAA 60.679 57.895 12.95 0.00 0.00 3.68
96 97 1.893062 GAGGGCCTGGATTGCAAAC 59.107 57.895 12.95 0.00 0.00 2.93
97 98 0.613012 GAGGGCCTGGATTGCAAACT 60.613 55.000 12.95 0.00 0.00 2.66
98 99 0.704076 AGGGCCTGGATTGCAAACTA 59.296 50.000 4.50 0.00 0.00 2.24
99 100 1.077005 AGGGCCTGGATTGCAAACTAA 59.923 47.619 4.50 0.00 0.00 2.24
100 101 1.899142 GGGCCTGGATTGCAAACTAAA 59.101 47.619 1.71 0.00 0.00 1.85
101 102 2.501316 GGGCCTGGATTGCAAACTAAAT 59.499 45.455 1.71 0.00 0.00 1.40
102 103 3.704061 GGGCCTGGATTGCAAACTAAATA 59.296 43.478 1.71 0.00 0.00 1.40
103 104 4.441495 GGGCCTGGATTGCAAACTAAATAC 60.441 45.833 1.71 0.00 0.00 1.89
104 105 4.402474 GGCCTGGATTGCAAACTAAATACT 59.598 41.667 1.71 0.00 0.00 2.12
105 106 5.450550 GGCCTGGATTGCAAACTAAATACTC 60.451 44.000 1.71 0.00 0.00 2.59
106 107 5.450550 GCCTGGATTGCAAACTAAATACTCC 60.451 44.000 1.71 2.83 0.00 3.85
107 108 5.652014 CCTGGATTGCAAACTAAATACTCCA 59.348 40.000 1.71 7.85 0.00 3.86
108 109 6.322201 CCTGGATTGCAAACTAAATACTCCAT 59.678 38.462 11.84 0.00 0.00 3.41
109 110 7.333528 TGGATTGCAAACTAAATACTCCATC 57.666 36.000 1.71 0.00 0.00 3.51
110 111 6.038161 TGGATTGCAAACTAAATACTCCATCG 59.962 38.462 1.71 0.00 0.00 3.84
111 112 6.260050 GGATTGCAAACTAAATACTCCATCGA 59.740 38.462 1.71 0.00 0.00 3.59
112 113 6.662414 TTGCAAACTAAATACTCCATCGAG 57.338 37.500 0.00 0.00 42.32 4.04
113 114 5.972935 TGCAAACTAAATACTCCATCGAGA 58.027 37.500 0.00 0.00 38.52 4.04
114 115 6.582636 TGCAAACTAAATACTCCATCGAGAT 58.417 36.000 0.00 0.00 38.52 2.75
115 116 6.479990 TGCAAACTAAATACTCCATCGAGATG 59.520 38.462 6.12 6.12 38.52 2.90
116 117 6.480320 GCAAACTAAATACTCCATCGAGATGT 59.520 38.462 11.59 0.00 38.52 3.06
117 118 7.517417 GCAAACTAAATACTCCATCGAGATGTG 60.517 40.741 11.59 6.96 38.52 3.21
118 119 6.961360 ACTAAATACTCCATCGAGATGTGA 57.039 37.500 11.59 7.84 38.52 3.58
119 120 7.348080 ACTAAATACTCCATCGAGATGTGAA 57.652 36.000 11.59 0.00 38.52 3.18
120 121 7.429633 ACTAAATACTCCATCGAGATGTGAAG 58.570 38.462 11.59 8.47 38.52 3.02
121 122 4.862902 ATACTCCATCGAGATGTGAAGG 57.137 45.455 11.59 0.00 38.52 3.46
122 123 2.739943 ACTCCATCGAGATGTGAAGGA 58.260 47.619 11.59 1.49 38.52 3.36
151 152 1.872952 TCTGTTTGCCTGTCATCGTTG 59.127 47.619 0.00 0.00 0.00 4.10
169 170 2.386661 TGTTGCCTGTAGCTAGCTTC 57.613 50.000 24.88 18.92 44.23 3.86
179 228 1.284313 AGCTAGCTTCCCTCTGCTTT 58.716 50.000 12.68 0.00 40.35 3.51
201 265 8.616076 GCTTTTGCTCTGTATATTTGACTGTAT 58.384 33.333 0.00 0.00 43.35 2.29
205 269 9.534565 TTGCTCTGTATATTTGACTGTATCTTC 57.465 33.333 0.00 0.00 0.00 2.87
221 285 1.768275 TCTTCAGGTCAGTTTCAGGCA 59.232 47.619 0.00 0.00 0.00 4.75
235 299 1.305297 AGGCATCAGGTCGACTCCA 60.305 57.895 16.46 0.00 0.00 3.86
236 300 0.689080 AGGCATCAGGTCGACTCCAT 60.689 55.000 16.46 1.69 0.00 3.41
293 383 2.501128 GGCGGCTGCTGTCTATCA 59.499 61.111 18.85 0.00 42.25 2.15
294 384 1.593750 GGCGGCTGCTGTCTATCAG 60.594 63.158 18.85 0.00 46.12 2.90
313 403 5.695851 TCAGCTCTTTCTTTTTAGCAAGG 57.304 39.130 0.00 0.00 37.44 3.61
325 625 9.528018 TTCTTTTTAGCAAGGAATACACTTTTG 57.472 29.630 0.00 0.00 0.00 2.44
328 628 4.243007 AGCAAGGAATACACTTTTGCAC 57.757 40.909 9.76 0.00 44.81 4.57
334 634 4.520492 AGGAATACACTTTTGCACTTGAGG 59.480 41.667 0.00 0.00 0.00 3.86
344 644 5.906113 TTTGCACTTGAGGTAGTTTTGAA 57.094 34.783 0.00 0.00 0.00 2.69
1390 9991 0.102300 CTCACGGACGCCATGTATCA 59.898 55.000 0.00 0.00 0.00 2.15
1525 10127 6.366332 CGTATAATTCATGGGAGTGCTAGAAC 59.634 42.308 0.00 0.00 0.00 3.01
1563 10165 2.422479 CTCATGGAGTTTCATGGTGCAG 59.578 50.000 0.72 0.00 43.33 4.41
1568 10170 1.808945 GAGTTTCATGGTGCAGTGGAG 59.191 52.381 0.00 0.00 0.00 3.86
1624 10226 6.275335 AGTTTGTTGTGATTTTGAGTGGATG 58.725 36.000 0.00 0.00 0.00 3.51
1625 10227 4.241590 TGTTGTGATTTTGAGTGGATGC 57.758 40.909 0.00 0.00 0.00 3.91
1645 10247 4.201951 CCGTATGGTGTGCAGACC 57.798 61.111 25.63 25.63 36.43 3.85
1687 10289 1.895798 TGACAACTTTGTGTTTGGCCA 59.104 42.857 0.00 0.00 42.43 5.36
1694 10296 0.387202 TTGTGTTTGGCCACCATTCG 59.613 50.000 3.88 0.00 34.35 3.34
1821 10702 3.243569 GGTCCTGACATATGAGGAGTTCG 60.244 52.174 10.38 0.00 39.12 3.95
1920 10801 2.010145 TGCCAGAGAGTTACAATCGC 57.990 50.000 0.00 0.00 0.00 4.58
1937 10818 1.741770 GCGGTGGTCAATTCTCGCT 60.742 57.895 0.00 0.00 40.00 4.93
1965 10846 8.644619 CAAATTTGTTTGCAGATGTAATGAGAG 58.355 33.333 10.15 0.00 0.00 3.20
1984 10865 4.074970 AGAGCGAACCTGAATGTTCATTT 58.925 39.130 4.96 0.00 43.84 2.32
2034 10915 5.591067 AGGAGACTAGTTGATAGAAACCTCG 59.409 44.000 0.00 0.00 40.61 4.63
2087 10968 7.119846 CGTCTTGAAAAAGGTCTTCCAATAGAT 59.880 37.037 0.00 0.00 35.89 1.98
2110 10991 1.000955 GACGGACATGGTTCTGTGTCT 59.999 52.381 2.67 0.00 43.23 3.41
2111 10992 1.432514 CGGACATGGTTCTGTGTCTG 58.567 55.000 0.00 3.12 43.23 3.51
2132 11013 3.006247 GGCTTCTCCACTTCAGTTCATC 58.994 50.000 0.00 0.00 34.01 2.92
2154 11035 6.899393 TCTGGAATAGCTCAAACAATGTTT 57.101 33.333 5.41 5.41 0.00 2.83
2155 11036 7.288810 TCTGGAATAGCTCAAACAATGTTTT 57.711 32.000 8.85 0.00 0.00 2.43
2159 11040 6.251376 GGAATAGCTCAAACAATGTTTTAGCG 59.749 38.462 28.33 11.93 33.80 4.26
2174 11055 5.531659 TGTTTTAGCGAAGGAATTACCACAA 59.468 36.000 0.00 0.00 42.04 3.33
2285 11166 9.288576 ACTACATTTGATCACATTCTTTCAAGA 57.711 29.630 0.00 0.00 30.45 3.02
2308 11189 2.744760 TGCTCAAGATACTCCTCAGCT 58.255 47.619 0.00 0.00 0.00 4.24
2325 11206 2.998480 TCGGGGCCAAGCGTAGAA 60.998 61.111 4.39 0.00 0.00 2.10
2326 11207 2.189521 CGGGGCCAAGCGTAGAAT 59.810 61.111 4.39 0.00 0.00 2.40
2412 11293 9.403583 GTTATGAAACCTTACCTATTCCATGAA 57.596 33.333 0.00 0.00 0.00 2.57
2418 11299 7.272144 ACCTTACCTATTCCATGAAAGTTCT 57.728 36.000 0.00 0.00 0.00 3.01
2419 11300 7.339482 ACCTTACCTATTCCATGAAAGTTCTC 58.661 38.462 0.00 0.00 0.00 2.87
2424 11305 6.069440 ACCTATTCCATGAAAGTTCTCCATCA 60.069 38.462 0.00 0.00 0.00 3.07
2434 11315 6.255670 TGAAAGTTCTCCATCATACGATTTCG 59.744 38.462 0.00 0.00 46.33 3.46
2470 11351 9.671521 CAACGTTTTGTATTATTAAGACTCTCG 57.328 33.333 0.00 5.41 0.00 4.04
2482 11363 4.922471 AAGACTCTCGGTTAGCCTATTC 57.078 45.455 0.00 0.00 0.00 1.75
2500 11381 3.420482 GGGGCCCCACATGCTAGT 61.420 66.667 37.61 0.00 35.81 2.57
2506 11387 1.614317 GCCCCACATGCTAGTGAGTTT 60.614 52.381 10.13 0.00 42.05 2.66
2588 11469 2.367567 TCGTATTTACCATCTCAGGCCC 59.632 50.000 0.00 0.00 0.00 5.80
2627 11508 7.442666 AGAAGTTTGAGGTAAATTCTGTGTCTC 59.557 37.037 0.00 0.00 31.23 3.36
2648 11529 2.599848 CGGTTTGACACGAAGCTCTTTG 60.600 50.000 0.00 0.00 0.00 2.77
2672 11553 3.124921 CGTGTGGCCCGACAATCC 61.125 66.667 0.00 0.00 0.00 3.01
2675 11556 1.002624 TGTGGCCCGACAATCCTTC 60.003 57.895 0.00 0.00 0.00 3.46
2688 11569 6.968904 CCGACAATCCTTCAAATTGATAGTTG 59.031 38.462 0.00 3.43 37.51 3.16
2700 11581 3.906720 TGATAGTTGGGCTAGTTGGTC 57.093 47.619 0.00 0.00 32.45 4.02
2706 11587 1.429930 TGGGCTAGTTGGTCAGAACA 58.570 50.000 0.00 0.00 0.00 3.18
2729 11610 2.032620 AGTTAGCCGGTCCACTATGAG 58.967 52.381 1.90 0.00 0.00 2.90
2741 11622 5.233988 GTCCACTATGAGCCATATGAAGTC 58.766 45.833 3.65 0.00 0.00 3.01
2747 11628 3.888583 TGAGCCATATGAAGTCATTGCA 58.111 40.909 3.65 0.00 37.76 4.08
2774 11662 5.212745 AGGTAACCCAAAAACAAATCTGGA 58.787 37.500 0.00 0.00 37.17 3.86
2782 11670 5.221702 CCAAAAACAAATCTGGATGGAGGTT 60.222 40.000 0.00 0.00 0.00 3.50
2790 11678 4.993705 TCTGGATGGAGGTTTACACTTT 57.006 40.909 0.00 0.00 0.00 2.66
2807 11695 6.301169 ACACTTTTTGTTGGGTAATTTGGA 57.699 33.333 0.00 0.00 33.09 3.53
2810 11698 7.281999 ACACTTTTTGTTGGGTAATTTGGAATG 59.718 33.333 0.00 0.00 33.09 2.67
2813 11701 3.515562 TGTTGGGTAATTTGGAATGGCT 58.484 40.909 0.00 0.00 0.00 4.75
2825 11713 2.099592 TGGAATGGCTGCGATGATTTTC 59.900 45.455 0.00 0.00 0.00 2.29
2826 11714 2.099592 GGAATGGCTGCGATGATTTTCA 59.900 45.455 0.00 0.00 0.00 2.69
2831 11719 3.927758 TGGCTGCGATGATTTTCATTTTG 59.072 39.130 0.00 0.00 37.20 2.44
2833 11721 4.175516 GCTGCGATGATTTTCATTTTGGA 58.824 39.130 0.00 0.00 37.20 3.53
2835 11723 5.120519 GCTGCGATGATTTTCATTTTGGAAA 59.879 36.000 0.00 0.00 37.20 3.13
2903 11791 6.425721 CACTCAGTTTTGACCTTATTCCGTTA 59.574 38.462 0.00 0.00 0.00 3.18
2906 11794 8.398878 TCAGTTTTGACCTTATTCCGTTAAAT 57.601 30.769 0.00 0.00 0.00 1.40
2945 11838 1.007734 CTTTGCAGCAGCCTGTGTG 60.008 57.895 0.00 0.00 41.26 3.82
2946 11839 1.731433 CTTTGCAGCAGCCTGTGTGT 61.731 55.000 0.00 0.00 41.26 3.72
2947 11840 0.465278 TTTGCAGCAGCCTGTGTGTA 60.465 50.000 0.00 0.00 41.26 2.90
2948 11841 0.886043 TTGCAGCAGCCTGTGTGTAG 60.886 55.000 0.00 0.00 41.26 2.74
2949 11842 1.004560 GCAGCAGCCTGTGTGTAGA 60.005 57.895 0.00 0.00 41.26 2.59
2950 11843 1.018226 GCAGCAGCCTGTGTGTAGAG 61.018 60.000 0.00 0.00 41.26 2.43
2951 11844 0.319728 CAGCAGCCTGTGTGTAGAGT 59.680 55.000 0.00 0.00 34.31 3.24
2952 11845 0.319728 AGCAGCCTGTGTGTAGAGTG 59.680 55.000 0.00 0.00 0.00 3.51
2953 11846 0.034059 GCAGCCTGTGTGTAGAGTGT 59.966 55.000 0.00 0.00 0.00 3.55
2954 11847 1.788258 CAGCCTGTGTGTAGAGTGTG 58.212 55.000 0.00 0.00 0.00 3.82
3002 11901 5.238583 TCTAGCTTTTAGTTTCTGTCAGGC 58.761 41.667 0.00 0.00 0.00 4.85
3026 11925 0.878416 TGGTTACGCCAGCAAATCAC 59.122 50.000 0.00 0.00 43.61 3.06
3163 12069 2.034812 CCGTAACTCTCATGCCTACTCC 59.965 54.545 0.00 0.00 0.00 3.85
3203 12113 3.435275 AGGTTCTGCAGACTCTCATACA 58.565 45.455 18.03 0.00 0.00 2.29
3228 12138 6.777091 AGTCTACATACGGTCTAGACTCTAGA 59.223 42.308 21.88 11.23 39.98 2.43
3229 12139 6.863126 GTCTACATACGGTCTAGACTCTAGAC 59.137 46.154 28.10 28.10 42.28 2.59
3230 12140 5.874897 ACATACGGTCTAGACTCTAGACT 57.125 43.478 31.77 21.68 42.54 3.24
3231 12141 6.237887 ACATACGGTCTAGACTCTAGACTT 57.762 41.667 31.77 24.45 42.54 3.01
3232 12142 6.652053 ACATACGGTCTAGACTCTAGACTTT 58.348 40.000 31.77 24.21 42.54 2.66
3233 12143 7.790027 ACATACGGTCTAGACTCTAGACTTTA 58.210 38.462 31.77 25.09 42.54 1.85
3234 12144 7.927629 ACATACGGTCTAGACTCTAGACTTTAG 59.072 40.741 31.77 24.59 42.54 1.85
3235 12145 6.298441 ACGGTCTAGACTCTAGACTTTAGT 57.702 41.667 31.77 25.03 42.54 2.24
3236 12146 6.340522 ACGGTCTAGACTCTAGACTTTAGTC 58.659 44.000 31.77 19.65 42.54 2.59
3254 12164 9.480053 ACTTTAGTCAAATGAAATTGTTGATGG 57.520 29.630 0.00 0.00 36.10 3.51
3255 12165 7.887996 TTAGTCAAATGAAATTGTTGATGGC 57.112 32.000 0.00 0.00 36.10 4.40
3256 12166 4.925054 AGTCAAATGAAATTGTTGATGGCG 59.075 37.500 0.00 0.00 36.10 5.69
3257 12167 4.685628 GTCAAATGAAATTGTTGATGGCGT 59.314 37.500 0.00 0.00 36.10 5.68
3258 12168 4.685165 TCAAATGAAATTGTTGATGGCGTG 59.315 37.500 0.00 0.00 36.10 5.34
3259 12169 2.721274 TGAAATTGTTGATGGCGTGG 57.279 45.000 0.00 0.00 0.00 4.94
3260 12170 1.959985 TGAAATTGTTGATGGCGTGGT 59.040 42.857 0.00 0.00 0.00 4.16
3261 12171 2.363680 TGAAATTGTTGATGGCGTGGTT 59.636 40.909 0.00 0.00 0.00 3.67
3262 12172 2.723124 AATTGTTGATGGCGTGGTTC 57.277 45.000 0.00 0.00 0.00 3.62
3263 12173 1.909700 ATTGTTGATGGCGTGGTTCT 58.090 45.000 0.00 0.00 0.00 3.01
3264 12174 0.950836 TTGTTGATGGCGTGGTTCTG 59.049 50.000 0.00 0.00 0.00 3.02
3265 12175 0.179032 TGTTGATGGCGTGGTTCTGT 60.179 50.000 0.00 0.00 0.00 3.41
3266 12176 0.951558 GTTGATGGCGTGGTTCTGTT 59.048 50.000 0.00 0.00 0.00 3.16
3267 12177 1.069227 GTTGATGGCGTGGTTCTGTTC 60.069 52.381 0.00 0.00 0.00 3.18
3268 12178 0.107643 TGATGGCGTGGTTCTGTTCA 59.892 50.000 0.00 0.00 0.00 3.18
3269 12179 0.517316 GATGGCGTGGTTCTGTTCAC 59.483 55.000 0.00 0.00 0.00 3.18
3270 12180 0.179032 ATGGCGTGGTTCTGTTCACA 60.179 50.000 0.00 0.00 33.83 3.58
3271 12181 0.393132 TGGCGTGGTTCTGTTCACAA 60.393 50.000 0.00 0.00 33.83 3.33
3272 12182 0.028902 GGCGTGGTTCTGTTCACAAC 59.971 55.000 0.00 0.00 33.83 3.32
3273 12183 1.014352 GCGTGGTTCTGTTCACAACT 58.986 50.000 0.00 0.00 33.83 3.16
3274 12184 1.400494 GCGTGGTTCTGTTCACAACTT 59.600 47.619 0.00 0.00 33.83 2.66
3275 12185 2.538939 GCGTGGTTCTGTTCACAACTTC 60.539 50.000 0.00 0.00 33.83 3.01
3276 12186 2.675844 CGTGGTTCTGTTCACAACTTCA 59.324 45.455 0.00 0.00 33.83 3.02
3277 12187 3.242413 CGTGGTTCTGTTCACAACTTCAG 60.242 47.826 0.00 0.00 33.83 3.02
3278 12188 3.938963 GTGGTTCTGTTCACAACTTCAGA 59.061 43.478 0.00 0.00 35.54 3.27
3279 12189 4.034510 GTGGTTCTGTTCACAACTTCAGAG 59.965 45.833 0.00 0.00 38.03 3.35
3280 12190 4.192317 GGTTCTGTTCACAACTTCAGAGT 58.808 43.478 0.00 0.00 38.03 3.24
3281 12191 4.636206 GGTTCTGTTCACAACTTCAGAGTT 59.364 41.667 0.00 0.00 46.85 3.01
3289 12199 1.209128 AACTTCAGAGTTGTCGCACG 58.791 50.000 0.00 0.00 44.27 5.34
3290 12200 1.215655 ACTTCAGAGTTGTCGCACGC 61.216 55.000 0.00 0.00 29.87 5.34
3291 12201 2.203140 CTTCAGAGTTGTCGCACGCG 62.203 60.000 3.53 3.53 41.35 6.01
3292 12202 2.671357 TTCAGAGTTGTCGCACGCGA 62.671 55.000 15.93 10.57 46.87 5.87
3317 12227 7.934855 AAAAAGCATCATCACTCACTTAGAT 57.065 32.000 0.00 0.00 0.00 1.98
3319 12229 9.453572 AAAAAGCATCATCACTCACTTAGATAA 57.546 29.630 0.00 0.00 0.00 1.75
3320 12230 8.430801 AAAGCATCATCACTCACTTAGATAAC 57.569 34.615 0.00 0.00 0.00 1.89
3321 12231 7.117285 AGCATCATCACTCACTTAGATAACA 57.883 36.000 0.00 0.00 0.00 2.41
3322 12232 7.559486 AGCATCATCACTCACTTAGATAACAA 58.441 34.615 0.00 0.00 0.00 2.83
3323 12233 7.710044 AGCATCATCACTCACTTAGATAACAAG 59.290 37.037 0.00 0.00 0.00 3.16
3324 12234 7.518052 GCATCATCACTCACTTAGATAACAAGC 60.518 40.741 0.00 0.00 0.00 4.01
3325 12235 6.341316 TCATCACTCACTTAGATAACAAGCC 58.659 40.000 0.00 0.00 0.00 4.35
3326 12236 4.744570 TCACTCACTTAGATAACAAGCCG 58.255 43.478 0.00 0.00 0.00 5.52
3327 12237 4.219944 TCACTCACTTAGATAACAAGCCGT 59.780 41.667 0.00 0.00 0.00 5.68
3328 12238 4.563184 CACTCACTTAGATAACAAGCCGTC 59.437 45.833 0.00 0.00 0.00 4.79
3329 12239 4.113354 CTCACTTAGATAACAAGCCGTCC 58.887 47.826 0.00 0.00 0.00 4.79
3330 12240 2.858344 CACTTAGATAACAAGCCGTCCG 59.142 50.000 0.00 0.00 0.00 4.79
3331 12241 2.159142 ACTTAGATAACAAGCCGTCCGG 60.159 50.000 0.24 0.24 38.57 5.14
3332 12242 1.477553 TAGATAACAAGCCGTCCGGT 58.522 50.000 7.66 0.00 37.65 5.28
3333 12243 0.108329 AGATAACAAGCCGTCCGGTG 60.108 55.000 7.66 1.22 37.65 4.94
3334 12244 0.108520 GATAACAAGCCGTCCGGTGA 60.109 55.000 7.66 0.00 37.65 4.02
3335 12245 0.390735 ATAACAAGCCGTCCGGTGAC 60.391 55.000 7.66 0.00 38.18 3.67
3336 12246 2.438951 TAACAAGCCGTCCGGTGACC 62.439 60.000 7.66 0.00 38.32 4.02
3337 12247 4.308458 CAAGCCGTCCGGTGACCA 62.308 66.667 1.11 0.00 38.32 4.02
3338 12248 3.552384 AAGCCGTCCGGTGACCAA 61.552 61.111 1.11 0.00 38.32 3.67
3339 12249 3.109592 AAGCCGTCCGGTGACCAAA 62.110 57.895 1.11 0.00 38.32 3.28
3340 12250 2.359478 GCCGTCCGGTGACCAAAT 60.359 61.111 1.11 0.00 38.32 2.32
3341 12251 1.078988 GCCGTCCGGTGACCAAATA 60.079 57.895 1.11 0.00 38.32 1.40
3342 12252 0.463116 GCCGTCCGGTGACCAAATAT 60.463 55.000 1.11 0.00 38.32 1.28
3343 12253 1.578583 CCGTCCGGTGACCAAATATC 58.421 55.000 1.11 0.00 38.32 1.63
3344 12254 1.578583 CGTCCGGTGACCAAATATCC 58.421 55.000 1.11 0.00 38.32 2.59
3345 12255 1.808891 CGTCCGGTGACCAAATATCCC 60.809 57.143 1.11 0.00 38.32 3.85
3346 12256 0.841289 TCCGGTGACCAAATATCCCC 59.159 55.000 1.11 0.00 0.00 4.81
3347 12257 0.179001 CCGGTGACCAAATATCCCCC 60.179 60.000 1.11 0.00 0.00 5.40
3348 12258 0.534203 CGGTGACCAAATATCCCCCG 60.534 60.000 1.11 0.00 0.00 5.73
3349 12259 0.549469 GGTGACCAAATATCCCCCGT 59.451 55.000 0.00 0.00 0.00 5.28
3350 12260 1.675552 GTGACCAAATATCCCCCGTG 58.324 55.000 0.00 0.00 0.00 4.94
3351 12261 1.064979 GTGACCAAATATCCCCCGTGT 60.065 52.381 0.00 0.00 0.00 4.49
3352 12262 1.210967 TGACCAAATATCCCCCGTGTC 59.789 52.381 0.00 0.00 0.00 3.67
3353 12263 0.179468 ACCAAATATCCCCCGTGTCG 59.821 55.000 0.00 0.00 0.00 4.35
3354 12264 1.164041 CCAAATATCCCCCGTGTCGC 61.164 60.000 0.00 0.00 0.00 5.19
3355 12265 1.147600 AAATATCCCCCGTGTCGCC 59.852 57.895 0.00 0.00 0.00 5.54
3356 12266 2.333701 AAATATCCCCCGTGTCGCCC 62.334 60.000 0.00 0.00 0.00 6.13
3393 12303 1.920532 GTGGAACCCTATCCCCACC 59.079 63.158 0.00 0.00 42.30 4.61
3394 12304 1.691337 TGGAACCCTATCCCCACCG 60.691 63.158 0.00 0.00 38.82 4.94
3395 12305 2.509422 GAACCCTATCCCCACCGC 59.491 66.667 0.00 0.00 0.00 5.68
3396 12306 3.094498 AACCCTATCCCCACCGCC 61.094 66.667 0.00 0.00 0.00 6.13
3434 12344 4.451150 GCTGATGACGGCGGTGGA 62.451 66.667 13.24 0.00 38.67 4.02
3435 12345 2.202797 CTGATGACGGCGGTGGAG 60.203 66.667 13.24 0.00 0.00 3.86
3436 12346 3.723235 CTGATGACGGCGGTGGAGG 62.723 68.421 13.24 0.00 0.00 4.30
3437 12347 3.771160 GATGACGGCGGTGGAGGT 61.771 66.667 13.24 0.00 0.00 3.85
3438 12348 3.310860 GATGACGGCGGTGGAGGTT 62.311 63.158 13.24 0.00 0.00 3.50
3439 12349 3.310860 ATGACGGCGGTGGAGGTTC 62.311 63.158 13.24 0.00 0.00 3.62
3440 12350 4.754667 GACGGCGGTGGAGGTTCC 62.755 72.222 13.24 0.00 36.96 3.62
3443 12353 3.647771 GGCGGTGGAGGTTCCCTT 61.648 66.667 0.00 0.00 35.03 3.95
3444 12354 2.046217 GCGGTGGAGGTTCCCTTC 60.046 66.667 0.00 0.00 35.03 3.46
3445 12355 2.669240 CGGTGGAGGTTCCCTTCC 59.331 66.667 0.00 0.00 35.03 3.46
3446 12356 2.967946 CGGTGGAGGTTCCCTTCCC 61.968 68.421 0.00 0.00 35.03 3.97
3447 12357 1.541620 GGTGGAGGTTCCCTTCCCT 60.542 63.158 0.00 0.00 35.03 4.20
3448 12358 1.563577 GGTGGAGGTTCCCTTCCCTC 61.564 65.000 0.00 0.00 45.44 4.30
3450 12360 3.742730 GAGGTTCCCTTCCCTCCC 58.257 66.667 0.00 0.00 41.22 4.30
3451 12361 2.285442 AGGTTCCCTTCCCTCCCG 60.285 66.667 0.00 0.00 0.00 5.14
3452 12362 4.111053 GGTTCCCTTCCCTCCCGC 62.111 72.222 0.00 0.00 0.00 6.13
3453 12363 4.468689 GTTCCCTTCCCTCCCGCG 62.469 72.222 0.00 0.00 0.00 6.46
3456 12366 4.468689 CCCTTCCCTCCCGCGTTC 62.469 72.222 4.92 0.00 0.00 3.95
3457 12367 4.468689 CCTTCCCTCCCGCGTTCC 62.469 72.222 4.92 0.00 0.00 3.62
3458 12368 3.391382 CTTCCCTCCCGCGTTCCT 61.391 66.667 4.92 0.00 0.00 3.36
3459 12369 2.926242 TTCCCTCCCGCGTTCCTT 60.926 61.111 4.92 0.00 0.00 3.36
3460 12370 2.465055 CTTCCCTCCCGCGTTCCTTT 62.465 60.000 4.92 0.00 0.00 3.11
3461 12371 2.741486 TTCCCTCCCGCGTTCCTTTG 62.741 60.000 4.92 0.00 0.00 2.77
3462 12372 2.746277 CCTCCCGCGTTCCTTTGG 60.746 66.667 4.92 0.00 0.00 3.28
3463 12373 2.746277 CTCCCGCGTTCCTTTGGG 60.746 66.667 4.92 0.00 43.36 4.12
3464 12374 3.546714 CTCCCGCGTTCCTTTGGGT 62.547 63.158 4.92 0.00 42.54 4.51
3465 12375 3.361977 CCCGCGTTCCTTTGGGTG 61.362 66.667 4.92 0.00 36.86 4.61
3466 12376 2.281208 CCGCGTTCCTTTGGGTGA 60.281 61.111 4.92 0.00 0.00 4.02
3467 12377 2.325082 CCGCGTTCCTTTGGGTGAG 61.325 63.158 4.92 0.00 0.00 3.51
3468 12378 2.325082 CGCGTTCCTTTGGGTGAGG 61.325 63.158 0.00 0.00 35.53 3.86
3469 12379 2.626780 GCGTTCCTTTGGGTGAGGC 61.627 63.158 0.00 0.00 34.17 4.70
3470 12380 2.325082 CGTTCCTTTGGGTGAGGCG 61.325 63.158 0.00 0.00 34.17 5.52
3471 12381 1.971695 GTTCCTTTGGGTGAGGCGG 60.972 63.158 0.00 0.00 34.17 6.13
3472 12382 3.204467 TTCCTTTGGGTGAGGCGGG 62.204 63.158 0.00 0.00 34.17 6.13
3473 12383 3.966543 CCTTTGGGTGAGGCGGGT 61.967 66.667 0.00 0.00 0.00 5.28
3474 12384 2.359975 CTTTGGGTGAGGCGGGTC 60.360 66.667 0.00 0.00 0.00 4.46
3475 12385 3.172106 TTTGGGTGAGGCGGGTCA 61.172 61.111 0.00 0.00 0.00 4.02
3476 12386 3.485346 TTTGGGTGAGGCGGGTCAC 62.485 63.158 4.35 4.35 45.30 3.67
3480 12390 4.295119 GTGAGGCGGGTCACACGT 62.295 66.667 0.00 0.00 45.34 4.49
3481 12391 4.293648 TGAGGCGGGTCACACGTG 62.294 66.667 15.48 15.48 0.00 4.49
3486 12396 4.293648 CGGGTCACACGTGGCTCA 62.294 66.667 21.57 0.00 34.80 4.26
3487 12397 2.357517 GGGTCACACGTGGCTCAG 60.358 66.667 21.57 4.26 35.32 3.35
3488 12398 2.357517 GGTCACACGTGGCTCAGG 60.358 66.667 21.57 2.02 35.13 3.86
3489 12399 2.357517 GTCACACGTGGCTCAGGG 60.358 66.667 21.57 0.00 31.34 4.45
3490 12400 3.625897 TCACACGTGGCTCAGGGG 61.626 66.667 21.57 0.00 0.00 4.79
3491 12401 3.941188 CACACGTGGCTCAGGGGT 61.941 66.667 21.57 0.00 36.24 4.95
3492 12402 3.626924 ACACGTGGCTCAGGGGTC 61.627 66.667 21.57 0.00 29.42 4.46
3493 12403 4.394712 CACGTGGCTCAGGGGTCC 62.395 72.222 7.95 0.00 0.00 4.46
3494 12404 4.640690 ACGTGGCTCAGGGGTCCT 62.641 66.667 0.00 0.00 0.00 3.85
3495 12405 3.775654 CGTGGCTCAGGGGTCCTC 61.776 72.222 0.00 0.00 0.00 3.71
3496 12406 3.403558 GTGGCTCAGGGGTCCTCC 61.404 72.222 0.00 0.00 0.00 4.30
3497 12407 3.615811 TGGCTCAGGGGTCCTCCT 61.616 66.667 0.00 0.00 37.71 3.69
3498 12408 2.766229 GGCTCAGGGGTCCTCCTC 60.766 72.222 0.00 0.00 34.31 3.71
3499 12409 2.766229 GCTCAGGGGTCCTCCTCC 60.766 72.222 0.00 0.00 33.94 4.30
3500 12410 2.041405 CTCAGGGGTCCTCCTCCC 60.041 72.222 0.00 0.00 43.90 4.30
3504 12414 2.706071 GGGGTCCTCCTCCCTGAT 59.294 66.667 0.96 0.00 44.07 2.90
3505 12415 1.460497 GGGGTCCTCCTCCCTGATC 60.460 68.421 0.96 0.00 44.07 2.92
3506 12416 1.629297 GGGTCCTCCTCCCTGATCT 59.371 63.158 0.00 0.00 41.58 2.75
3507 12417 0.762461 GGGTCCTCCTCCCTGATCTG 60.762 65.000 0.00 0.00 41.58 2.90
3508 12418 0.263172 GGTCCTCCTCCCTGATCTGA 59.737 60.000 0.38 0.00 0.00 3.27
3509 12419 1.703411 GTCCTCCTCCCTGATCTGAG 58.297 60.000 0.38 1.24 0.00 3.35
3510 12420 0.105760 TCCTCCTCCCTGATCTGAGC 60.106 60.000 0.38 0.00 0.00 4.26
3511 12421 1.120795 CCTCCTCCCTGATCTGAGCC 61.121 65.000 0.38 0.00 0.00 4.70
3512 12422 1.456518 TCCTCCCTGATCTGAGCCG 60.457 63.158 0.38 0.00 0.00 5.52
3513 12423 1.760086 CCTCCCTGATCTGAGCCGT 60.760 63.158 0.38 0.00 0.00 5.68
3514 12424 1.739049 CTCCCTGATCTGAGCCGTC 59.261 63.158 0.38 0.00 0.00 4.79
3515 12425 1.000359 TCCCTGATCTGAGCCGTCA 60.000 57.895 0.38 0.00 0.00 4.35
3516 12426 0.397675 TCCCTGATCTGAGCCGTCAT 60.398 55.000 0.38 0.00 30.18 3.06
3517 12427 0.467384 CCCTGATCTGAGCCGTCATT 59.533 55.000 0.38 0.00 30.18 2.57
3518 12428 1.579698 CCTGATCTGAGCCGTCATTG 58.420 55.000 0.38 0.00 30.18 2.82
3519 12429 0.935898 CTGATCTGAGCCGTCATTGC 59.064 55.000 0.00 0.00 30.18 3.56
3520 12430 0.807275 TGATCTGAGCCGTCATTGCG 60.807 55.000 0.00 0.00 30.18 4.85
3548 12458 4.933064 CGATCTGAGGCCGCCGAC 62.933 72.222 3.22 3.18 0.00 4.79
3549 12459 4.933064 GATCTGAGGCCGCCGACG 62.933 72.222 3.22 0.00 39.67 5.12
3570 12480 4.047125 CCTTGGCGGGGTGGTGAT 62.047 66.667 0.00 0.00 0.00 3.06
3571 12481 2.751436 CTTGGCGGGGTGGTGATG 60.751 66.667 0.00 0.00 0.00 3.07
3572 12482 4.358841 TTGGCGGGGTGGTGATGG 62.359 66.667 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.841300 CATCATCATAATCATCAATGGATCTCC 58.159 37.037 0.00 0.00 0.00 3.71
1 2 9.614792 TCATCATCATAATCATCAATGGATCTC 57.385 33.333 0.00 0.00 0.00 2.75
4 5 9.920946 TCATCATCATCATAATCATCAATGGAT 57.079 29.630 0.00 0.00 0.00 3.41
5 6 9.174166 GTCATCATCATCATAATCATCAATGGA 57.826 33.333 0.00 0.00 0.00 3.41
6 7 8.122952 CGTCATCATCATCATAATCATCAATGG 58.877 37.037 0.00 0.00 0.00 3.16
7 8 8.879759 TCGTCATCATCATCATAATCATCAATG 58.120 33.333 0.00 0.00 0.00 2.82
8 9 9.614792 ATCGTCATCATCATCATAATCATCAAT 57.385 29.630 0.00 0.00 0.00 2.57
9 10 8.879759 CATCGTCATCATCATCATAATCATCAA 58.120 33.333 0.00 0.00 0.00 2.57
10 11 8.255206 TCATCGTCATCATCATCATAATCATCA 58.745 33.333 0.00 0.00 0.00 3.07
11 12 8.644318 TCATCGTCATCATCATCATAATCATC 57.356 34.615 0.00 0.00 0.00 2.92
12 13 9.046296 CATCATCGTCATCATCATCATAATCAT 57.954 33.333 0.00 0.00 0.00 2.45
13 14 8.255206 TCATCATCGTCATCATCATCATAATCA 58.745 33.333 0.00 0.00 0.00 2.57
14 15 8.644318 TCATCATCGTCATCATCATCATAATC 57.356 34.615 0.00 0.00 0.00 1.75
15 16 9.046296 CATCATCATCGTCATCATCATCATAAT 57.954 33.333 0.00 0.00 0.00 1.28
16 17 8.255206 TCATCATCATCGTCATCATCATCATAA 58.745 33.333 0.00 0.00 0.00 1.90
17 18 7.778083 TCATCATCATCGTCATCATCATCATA 58.222 34.615 0.00 0.00 0.00 2.15
18 19 6.640518 TCATCATCATCGTCATCATCATCAT 58.359 36.000 0.00 0.00 0.00 2.45
19 20 6.032956 TCATCATCATCGTCATCATCATCA 57.967 37.500 0.00 0.00 0.00 3.07
20 21 6.757010 TCATCATCATCATCGTCATCATCATC 59.243 38.462 0.00 0.00 0.00 2.92
21 22 6.640518 TCATCATCATCATCGTCATCATCAT 58.359 36.000 0.00 0.00 0.00 2.45
22 23 6.032956 TCATCATCATCATCGTCATCATCA 57.967 37.500 0.00 0.00 0.00 3.07
23 24 6.018669 CCATCATCATCATCATCGTCATCATC 60.019 42.308 0.00 0.00 0.00 2.92
24 25 5.817816 CCATCATCATCATCATCGTCATCAT 59.182 40.000 0.00 0.00 0.00 2.45
25 26 5.175859 CCATCATCATCATCATCGTCATCA 58.824 41.667 0.00 0.00 0.00 3.07
26 27 5.176592 ACCATCATCATCATCATCGTCATC 58.823 41.667 0.00 0.00 0.00 2.92
27 28 5.161943 ACCATCATCATCATCATCGTCAT 57.838 39.130 0.00 0.00 0.00 3.06
28 29 4.612264 ACCATCATCATCATCATCGTCA 57.388 40.909 0.00 0.00 0.00 4.35
29 30 8.707938 TTAATACCATCATCATCATCATCGTC 57.292 34.615 0.00 0.00 0.00 4.20
30 31 9.676861 AATTAATACCATCATCATCATCATCGT 57.323 29.630 0.00 0.00 0.00 3.73
67 68 0.321671 CAGGCCCTCGTCTCAAAAGA 59.678 55.000 0.00 0.00 0.00 2.52
68 69 0.674895 CCAGGCCCTCGTCTCAAAAG 60.675 60.000 0.00 0.00 0.00 2.27
69 70 1.125093 TCCAGGCCCTCGTCTCAAAA 61.125 55.000 0.00 0.00 0.00 2.44
70 71 0.909610 ATCCAGGCCCTCGTCTCAAA 60.910 55.000 0.00 0.00 0.00 2.69
71 72 0.909610 AATCCAGGCCCTCGTCTCAA 60.910 55.000 0.00 0.00 0.00 3.02
72 73 1.306141 AATCCAGGCCCTCGTCTCA 60.306 57.895 0.00 0.00 0.00 3.27
73 74 1.144936 CAATCCAGGCCCTCGTCTC 59.855 63.158 0.00 0.00 0.00 3.36
74 75 3.036429 GCAATCCAGGCCCTCGTCT 62.036 63.158 0.00 0.00 0.00 4.18
75 76 2.514824 GCAATCCAGGCCCTCGTC 60.515 66.667 0.00 0.00 0.00 4.20
76 77 2.424842 TTTGCAATCCAGGCCCTCGT 62.425 55.000 0.00 0.00 0.00 4.18
77 78 1.678635 TTTGCAATCCAGGCCCTCG 60.679 57.895 0.00 0.00 0.00 4.63
78 79 0.613012 AGTTTGCAATCCAGGCCCTC 60.613 55.000 0.00 0.00 0.00 4.30
79 80 0.704076 TAGTTTGCAATCCAGGCCCT 59.296 50.000 0.00 0.00 0.00 5.19
80 81 1.555967 TTAGTTTGCAATCCAGGCCC 58.444 50.000 0.00 0.00 0.00 5.80
81 82 3.893326 ATTTAGTTTGCAATCCAGGCC 57.107 42.857 0.00 0.00 0.00 5.19
82 83 5.450550 GGAGTATTTAGTTTGCAATCCAGGC 60.451 44.000 0.00 0.00 0.00 4.85
83 84 5.652014 TGGAGTATTTAGTTTGCAATCCAGG 59.348 40.000 8.23 0.00 31.03 4.45
84 85 6.757897 TGGAGTATTTAGTTTGCAATCCAG 57.242 37.500 8.23 0.00 31.03 3.86
85 86 6.038161 CGATGGAGTATTTAGTTTGCAATCCA 59.962 38.462 13.40 13.40 38.58 3.41
86 87 6.260050 TCGATGGAGTATTTAGTTTGCAATCC 59.740 38.462 0.00 1.01 0.00 3.01
87 88 7.224753 TCTCGATGGAGTATTTAGTTTGCAATC 59.775 37.037 0.00 0.00 41.26 2.67
88 89 7.047891 TCTCGATGGAGTATTTAGTTTGCAAT 58.952 34.615 0.00 0.00 41.26 3.56
89 90 6.403049 TCTCGATGGAGTATTTAGTTTGCAA 58.597 36.000 4.53 0.00 41.26 4.08
90 91 5.972935 TCTCGATGGAGTATTTAGTTTGCA 58.027 37.500 4.53 0.00 41.26 4.08
91 92 6.480320 ACATCTCGATGGAGTATTTAGTTTGC 59.520 38.462 11.25 0.00 42.91 3.68
92 93 7.706607 TCACATCTCGATGGAGTATTTAGTTTG 59.293 37.037 11.25 0.00 42.91 2.93
93 94 7.782049 TCACATCTCGATGGAGTATTTAGTTT 58.218 34.615 11.25 0.00 42.91 2.66
94 95 7.348080 TCACATCTCGATGGAGTATTTAGTT 57.652 36.000 11.25 0.00 42.91 2.24
95 96 6.961360 TCACATCTCGATGGAGTATTTAGT 57.039 37.500 11.25 0.00 42.91 2.24
96 97 6.865726 CCTTCACATCTCGATGGAGTATTTAG 59.134 42.308 11.25 0.00 42.91 1.85
97 98 6.549736 TCCTTCACATCTCGATGGAGTATTTA 59.450 38.462 11.25 0.00 42.91 1.40
98 99 5.363868 TCCTTCACATCTCGATGGAGTATTT 59.636 40.000 11.25 0.00 42.91 1.40
99 100 4.895889 TCCTTCACATCTCGATGGAGTATT 59.104 41.667 11.25 0.00 42.91 1.89
100 101 4.474394 TCCTTCACATCTCGATGGAGTAT 58.526 43.478 11.25 0.00 42.91 2.12
101 102 3.898482 TCCTTCACATCTCGATGGAGTA 58.102 45.455 11.25 0.00 42.91 2.59
102 103 2.739943 TCCTTCACATCTCGATGGAGT 58.260 47.619 11.25 0.00 42.91 3.85
103 104 3.651206 CATCCTTCACATCTCGATGGAG 58.349 50.000 11.25 0.00 42.91 3.86
104 105 2.224137 GCATCCTTCACATCTCGATGGA 60.224 50.000 11.25 0.00 42.91 3.41
105 106 2.141517 GCATCCTTCACATCTCGATGG 58.858 52.381 11.25 1.47 42.91 3.51
106 107 3.109044 AGCATCCTTCACATCTCGATG 57.891 47.619 5.40 5.40 44.15 3.84
107 108 3.834489 AAGCATCCTTCACATCTCGAT 57.166 42.857 0.00 0.00 0.00 3.59
108 109 3.264947 CAAAGCATCCTTCACATCTCGA 58.735 45.455 0.00 0.00 0.00 4.04
109 110 2.223203 GCAAAGCATCCTTCACATCTCG 60.223 50.000 0.00 0.00 0.00 4.04
110 111 3.015327 AGCAAAGCATCCTTCACATCTC 58.985 45.455 0.00 0.00 0.00 2.75
111 112 3.015327 GAGCAAAGCATCCTTCACATCT 58.985 45.455 0.00 0.00 0.00 2.90
112 113 3.015327 AGAGCAAAGCATCCTTCACATC 58.985 45.455 0.00 0.00 0.00 3.06
113 114 2.753452 CAGAGCAAAGCATCCTTCACAT 59.247 45.455 0.00 0.00 0.00 3.21
114 115 2.156917 CAGAGCAAAGCATCCTTCACA 58.843 47.619 0.00 0.00 0.00 3.58
115 116 2.157738 ACAGAGCAAAGCATCCTTCAC 58.842 47.619 0.00 0.00 0.00 3.18
116 117 2.574006 ACAGAGCAAAGCATCCTTCA 57.426 45.000 0.00 0.00 0.00 3.02
117 118 3.572584 CAAACAGAGCAAAGCATCCTTC 58.427 45.455 0.00 0.00 0.00 3.46
118 119 2.288640 GCAAACAGAGCAAAGCATCCTT 60.289 45.455 0.00 0.00 0.00 3.36
119 120 1.271656 GCAAACAGAGCAAAGCATCCT 59.728 47.619 0.00 0.00 0.00 3.24
120 121 1.670967 GGCAAACAGAGCAAAGCATCC 60.671 52.381 0.00 0.00 0.00 3.51
121 122 1.271656 AGGCAAACAGAGCAAAGCATC 59.728 47.619 0.00 0.00 0.00 3.91
122 123 1.000506 CAGGCAAACAGAGCAAAGCAT 59.999 47.619 0.00 0.00 0.00 3.79
151 152 1.657822 GGAAGCTAGCTACAGGCAAC 58.342 55.000 19.70 2.57 44.79 4.17
169 170 2.479566 TACAGAGCAAAAGCAGAGGG 57.520 50.000 0.00 0.00 0.00 4.30
179 228 9.534565 GAAGATACAGTCAAATATACAGAGCAA 57.465 33.333 0.00 0.00 0.00 3.91
184 233 9.469807 GACCTGAAGATACAGTCAAATATACAG 57.530 37.037 0.00 0.00 36.30 2.74
188 237 8.083828 ACTGACCTGAAGATACAGTCAAATAT 57.916 34.615 0.00 0.00 37.24 1.28
190 239 6.365970 ACTGACCTGAAGATACAGTCAAAT 57.634 37.500 0.00 0.00 37.24 2.32
191 240 5.808366 ACTGACCTGAAGATACAGTCAAA 57.192 39.130 0.00 0.00 37.24 2.69
193 242 5.304357 TGAAACTGACCTGAAGATACAGTCA 59.696 40.000 0.00 0.00 40.23 3.41
194 243 5.784177 TGAAACTGACCTGAAGATACAGTC 58.216 41.667 0.00 0.00 40.23 3.51
201 265 1.768275 TGCCTGAAACTGACCTGAAGA 59.232 47.619 0.00 0.00 0.00 2.87
205 269 2.082231 CTGATGCCTGAAACTGACCTG 58.918 52.381 0.00 0.00 0.00 4.00
221 285 0.747255 CCGAATGGAGTCGACCTGAT 59.253 55.000 13.01 0.00 43.86 2.90
235 299 2.310538 GATGATTTTCAGGCCCCGAAT 58.689 47.619 0.00 0.00 0.00 3.34
236 300 1.684869 GGATGATTTTCAGGCCCCGAA 60.685 52.381 0.00 0.00 0.00 4.30
293 383 6.907853 ATTCCTTGCTAAAAAGAAAGAGCT 57.092 33.333 0.00 0.00 35.89 4.09
294 384 7.539022 GTGTATTCCTTGCTAAAAAGAAAGAGC 59.461 37.037 0.00 0.00 35.43 4.09
313 403 5.438761 ACCTCAAGTGCAAAAGTGTATTC 57.561 39.130 0.00 0.00 0.00 1.75
325 625 5.239525 ACATCTTCAAAACTACCTCAAGTGC 59.760 40.000 0.00 0.00 0.00 4.40
328 628 9.219603 TGATAACATCTTCAAAACTACCTCAAG 57.780 33.333 0.00 0.00 0.00 3.02
344 644 8.246180 CACTTTTTGGCTTGTATGATAACATCT 58.754 33.333 0.00 0.00 37.87 2.90
443 5691 2.929531 ATAGCGATATCAGACCAGCG 57.070 50.000 3.12 0.00 0.00 5.18
1390 9991 1.349026 CGCCCATCATCCAGTATCCTT 59.651 52.381 0.00 0.00 0.00 3.36
1401 10002 0.107897 TAGTTGAACGCGCCCATCAT 60.108 50.000 5.73 0.00 0.00 2.45
1402 10003 1.017177 GTAGTTGAACGCGCCCATCA 61.017 55.000 5.73 2.80 0.00 3.07
1525 10127 2.497138 TGAGATGTCTTGCCTTGTGTG 58.503 47.619 0.00 0.00 0.00 3.82
1563 10165 1.936547 CGCAATTTCTAGGCTCTCCAC 59.063 52.381 0.00 0.00 33.74 4.02
1568 10170 1.202188 GCAACCGCAATTTCTAGGCTC 60.202 52.381 0.00 0.00 38.36 4.70
1624 10226 2.433491 TGCACACCATACGGTCGC 60.433 61.111 0.00 0.00 44.71 5.19
1625 10227 1.076533 GTCTGCACACCATACGGTCG 61.077 60.000 0.00 0.00 44.71 4.79
1638 10240 9.875691 GTAAAGATATGTATCATATGGTCTGCA 57.124 33.333 2.13 0.00 35.17 4.41
1687 10289 4.463891 AGATCATTTGCTTTTCCGAATGGT 59.536 37.500 0.00 0.00 37.26 3.55
1694 10296 5.069501 AGCTCAAGATCATTTGCTTTTCC 57.930 39.130 0.00 0.00 0.00 3.13
1776 10378 0.747852 GTTTTCTTCCCCACCGCAAA 59.252 50.000 0.00 0.00 0.00 3.68
1920 10801 1.970917 GCAGCGAGAATTGACCACCG 61.971 60.000 0.00 0.00 0.00 4.94
1984 10865 4.901849 ACCTGCTCAATATACTAAGCCAGA 59.098 41.667 0.00 0.00 33.79 3.86
2034 10915 0.174162 GGATGCTCACCAAACATGGC 59.826 55.000 0.00 0.00 0.00 4.40
2058 10939 5.054477 TGGAAGACCTTTTTCAAGACGTAG 58.946 41.667 0.00 0.00 37.04 3.51
2087 10968 0.756294 ACAGAACCATGTCCGTCACA 59.244 50.000 0.00 0.00 40.18 3.58
2110 10991 1.768275 TGAACTGAAGTGGAGAAGCCA 59.232 47.619 0.00 0.00 46.96 4.75
2111 10992 2.550830 TGAACTGAAGTGGAGAAGCC 57.449 50.000 0.00 0.00 37.10 4.35
2132 11013 7.274250 GCTAAAACATTGTTTGAGCTATTCCAG 59.726 37.037 31.57 7.92 0.00 3.86
2154 11035 4.693566 CACTTGTGGTAATTCCTTCGCTAA 59.306 41.667 0.00 0.00 37.07 3.09
2155 11036 4.020928 TCACTTGTGGTAATTCCTTCGCTA 60.021 41.667 0.64 0.00 37.07 4.26
2159 11040 4.652822 AGGTCACTTGTGGTAATTCCTTC 58.347 43.478 0.64 0.00 37.07 3.46
2174 11055 6.127310 CCACTAATAGCTCTGTAAAGGTCACT 60.127 42.308 0.00 0.00 0.00 3.41
2206 11087 1.980772 GTGGCCTGCATCTTTGGCT 60.981 57.895 13.07 0.00 45.45 4.75
2285 11166 5.085920 AGCTGAGGAGTATCTTGAGCATAT 58.914 41.667 3.48 0.00 33.73 1.78
2308 11189 1.044231 TATTCTACGCTTGGCCCCGA 61.044 55.000 13.52 0.00 0.00 5.14
2325 11206 8.633561 GCCTAAGATTTGAAATTAAGGCACTAT 58.366 33.333 23.01 0.53 38.49 2.12
2326 11207 7.613801 TGCCTAAGATTTGAAATTAAGGCACTA 59.386 33.333 25.07 12.24 42.77 2.74
2395 11276 6.768381 GGAGAACTTTCATGGAATAGGTAAGG 59.232 42.308 0.00 0.00 0.00 2.69
2397 11278 7.265599 TGGAGAACTTTCATGGAATAGGTAA 57.734 36.000 0.00 0.00 0.00 2.85
2398 11279 6.884472 TGGAGAACTTTCATGGAATAGGTA 57.116 37.500 0.00 0.00 0.00 3.08
2399 11280 5.779241 TGGAGAACTTTCATGGAATAGGT 57.221 39.130 0.00 0.00 0.00 3.08
2444 11325 9.671521 CGAGAGTCTTAATAATACAAAACGTTG 57.328 33.333 0.00 0.00 40.84 4.10
2465 11346 1.269998 CCCGAATAGGCTAACCGAGAG 59.730 57.143 16.92 4.41 42.76 3.20
2482 11363 4.569180 CTAGCATGTGGGGCCCCG 62.569 72.222 36.00 22.47 39.42 5.73
2570 11451 4.044308 TGAAGGGCCTGAGATGGTAAATA 58.956 43.478 6.92 0.00 0.00 1.40
2576 11457 2.449137 AATTGAAGGGCCTGAGATGG 57.551 50.000 6.92 0.00 0.00 3.51
2599 11480 8.974060 ACACAGAATTTACCTCAAACTTCTAA 57.026 30.769 0.00 0.00 30.00 2.10
2627 11508 1.217882 AAGAGCTTCGTGTCAAACCG 58.782 50.000 0.00 0.00 0.00 4.44
2640 11521 1.066143 CACACGGTATCCCAAAGAGCT 60.066 52.381 0.00 0.00 0.00 4.09
2648 11529 4.540735 CGGGCCACACGGTATCCC 62.541 72.222 4.39 0.00 33.28 3.85
2661 11542 2.491693 TCAATTTGAAGGATTGTCGGGC 59.508 45.455 0.00 0.00 36.23 6.13
2662 11543 4.989279 ATCAATTTGAAGGATTGTCGGG 57.011 40.909 2.68 0.00 36.23 5.14
2672 11553 7.253422 CAACTAGCCCAACTATCAATTTGAAG 58.747 38.462 2.68 5.34 0.00 3.02
2675 11556 5.418840 ACCAACTAGCCCAACTATCAATTTG 59.581 40.000 0.00 0.00 0.00 2.32
2688 11569 1.348036 ACTGTTCTGACCAACTAGCCC 59.652 52.381 0.00 0.00 0.00 5.19
2700 11581 2.416972 GGACCGGCTAACTACTGTTCTG 60.417 54.545 0.00 0.00 37.59 3.02
2706 11587 2.814805 TAGTGGACCGGCTAACTACT 57.185 50.000 0.00 7.07 0.00 2.57
2729 11610 5.123502 CCTAGATGCAATGACTTCATATGGC 59.876 44.000 2.13 0.00 35.10 4.40
2741 11622 5.913137 TTTTGGGTTACCTAGATGCAATG 57.087 39.130 0.00 0.00 37.76 2.82
2747 11628 7.178451 CCAGATTTGTTTTTGGGTTACCTAGAT 59.822 37.037 0.00 0.00 37.76 1.98
2774 11662 5.163353 CCCAACAAAAAGTGTAAACCTCCAT 60.163 40.000 0.00 0.00 40.60 3.41
2782 11670 7.848128 TCCAAATTACCCAACAAAAAGTGTAA 58.152 30.769 0.00 0.00 40.60 2.41
2790 11678 4.349342 AGCCATTCCAAATTACCCAACAAA 59.651 37.500 0.00 0.00 0.00 2.83
2807 11695 4.395959 AATGAAAATCATCGCAGCCATT 57.604 36.364 0.00 0.00 35.76 3.16
2810 11698 3.307782 CCAAAATGAAAATCATCGCAGCC 59.692 43.478 0.00 0.00 35.76 4.85
2813 11701 6.222389 AGTTTCCAAAATGAAAATCATCGCA 58.778 32.000 0.00 0.00 35.76 5.10
2825 11713 9.824534 GGCATAAATGTAAAAGTTTCCAAAATG 57.175 29.630 0.00 0.00 0.00 2.32
2826 11714 9.008965 GGGCATAAATGTAAAAGTTTCCAAAAT 57.991 29.630 0.00 0.00 0.00 1.82
2831 11719 7.611770 AGAAGGGCATAAATGTAAAAGTTTCC 58.388 34.615 0.00 0.00 0.00 3.13
2860 11748 6.043474 ACTGAGTGTACACAAATTAGGGGTAA 59.957 38.462 27.06 0.00 0.00 2.85
2903 11791 4.941263 TGCTTAGCATTACGGAGACAATTT 59.059 37.500 1.39 0.00 31.71 1.82
2906 11794 3.056107 AGTGCTTAGCATTACGGAGACAA 60.056 43.478 11.03 0.00 41.91 3.18
2953 11846 3.847671 TTGATGGAGGTGTACACAACA 57.152 42.857 26.51 20.49 35.62 3.33
2954 11847 5.705609 AATTTGATGGAGGTGTACACAAC 57.294 39.130 26.51 18.28 0.00 3.32
3026 11925 7.464178 GCTGTACGTAGATTATTCCAACACTTG 60.464 40.741 0.00 0.00 0.00 3.16
3177 12087 2.235898 GAGAGTCTGCAGAACCTTCCAT 59.764 50.000 20.19 0.00 0.00 3.41
3208 12118 5.874897 AGTCTAGAGTCTAGACCGTATGT 57.125 43.478 39.05 25.46 43.61 2.29
3228 12138 9.480053 CCATCAACAATTTCATTTGACTAAAGT 57.520 29.630 0.00 0.00 32.21 2.66
3229 12139 8.437742 GCCATCAACAATTTCATTTGACTAAAG 58.562 33.333 0.00 0.00 32.21 1.85
3230 12140 7.116090 CGCCATCAACAATTTCATTTGACTAAA 59.884 33.333 0.00 0.00 32.21 1.85
3231 12141 6.585702 CGCCATCAACAATTTCATTTGACTAA 59.414 34.615 0.00 0.00 32.21 2.24
3232 12142 6.092092 CGCCATCAACAATTTCATTTGACTA 58.908 36.000 0.00 0.00 32.21 2.59
3233 12143 4.925054 CGCCATCAACAATTTCATTTGACT 59.075 37.500 0.00 0.00 32.21 3.41
3234 12144 4.685628 ACGCCATCAACAATTTCATTTGAC 59.314 37.500 0.00 0.00 32.21 3.18
3235 12145 4.685165 CACGCCATCAACAATTTCATTTGA 59.315 37.500 0.00 0.00 33.89 2.69
3236 12146 4.143073 CCACGCCATCAACAATTTCATTTG 60.143 41.667 0.00 0.00 0.00 2.32
3237 12147 3.995705 CCACGCCATCAACAATTTCATTT 59.004 39.130 0.00 0.00 0.00 2.32
3238 12148 3.006752 ACCACGCCATCAACAATTTCATT 59.993 39.130 0.00 0.00 0.00 2.57
3239 12149 2.562298 ACCACGCCATCAACAATTTCAT 59.438 40.909 0.00 0.00 0.00 2.57
3240 12150 1.959985 ACCACGCCATCAACAATTTCA 59.040 42.857 0.00 0.00 0.00 2.69
3241 12151 2.723124 ACCACGCCATCAACAATTTC 57.277 45.000 0.00 0.00 0.00 2.17
3242 12152 2.627699 AGAACCACGCCATCAACAATTT 59.372 40.909 0.00 0.00 0.00 1.82
3243 12153 2.030007 CAGAACCACGCCATCAACAATT 60.030 45.455 0.00 0.00 0.00 2.32
3244 12154 1.541147 CAGAACCACGCCATCAACAAT 59.459 47.619 0.00 0.00 0.00 2.71
3245 12155 0.950836 CAGAACCACGCCATCAACAA 59.049 50.000 0.00 0.00 0.00 2.83
3246 12156 0.179032 ACAGAACCACGCCATCAACA 60.179 50.000 0.00 0.00 0.00 3.33
3247 12157 0.951558 AACAGAACCACGCCATCAAC 59.048 50.000 0.00 0.00 0.00 3.18
3248 12158 1.234821 GAACAGAACCACGCCATCAA 58.765 50.000 0.00 0.00 0.00 2.57
3249 12159 0.107643 TGAACAGAACCACGCCATCA 59.892 50.000 0.00 0.00 0.00 3.07
3250 12160 0.517316 GTGAACAGAACCACGCCATC 59.483 55.000 0.00 0.00 0.00 3.51
3251 12161 0.179032 TGTGAACAGAACCACGCCAT 60.179 50.000 0.00 0.00 36.15 4.40
3252 12162 0.393132 TTGTGAACAGAACCACGCCA 60.393 50.000 0.00 0.00 36.15 5.69
3253 12163 0.028902 GTTGTGAACAGAACCACGCC 59.971 55.000 3.90 0.00 36.15 5.68
3254 12164 1.014352 AGTTGTGAACAGAACCACGC 58.986 50.000 10.41 0.00 35.43 5.34
3255 12165 2.675844 TGAAGTTGTGAACAGAACCACG 59.324 45.455 10.41 0.00 35.43 4.94
3256 12166 3.938963 TCTGAAGTTGTGAACAGAACCAC 59.061 43.478 10.41 6.57 36.63 4.16
3257 12167 4.191544 CTCTGAAGTTGTGAACAGAACCA 58.808 43.478 10.41 3.39 38.60 3.67
3258 12168 4.192317 ACTCTGAAGTTGTGAACAGAACC 58.808 43.478 10.41 0.00 38.60 3.62
3259 12169 5.803020 AACTCTGAAGTTGTGAACAGAAC 57.197 39.130 6.71 6.71 44.13 3.01
3270 12180 1.209128 CGTGCGACAACTCTGAAGTT 58.791 50.000 0.00 0.00 46.80 2.66
3271 12181 1.215655 GCGTGCGACAACTCTGAAGT 61.216 55.000 0.00 0.00 37.32 3.01
3272 12182 1.488957 GCGTGCGACAACTCTGAAG 59.511 57.895 0.00 0.00 0.00 3.02
3273 12183 2.300066 CGCGTGCGACAACTCTGAA 61.300 57.895 8.89 0.00 42.83 3.02
3274 12184 2.729491 CGCGTGCGACAACTCTGA 60.729 61.111 8.89 0.00 42.83 3.27
3275 12185 2.729491 TCGCGTGCGACAACTCTG 60.729 61.111 13.62 0.00 44.01 3.35
3293 12203 7.934855 ATCTAAGTGAGTGATGATGCTTTTT 57.065 32.000 0.00 0.00 0.00 1.94
3294 12204 8.887717 GTTATCTAAGTGAGTGATGATGCTTTT 58.112 33.333 0.00 0.00 0.00 2.27
3295 12205 8.043113 TGTTATCTAAGTGAGTGATGATGCTTT 58.957 33.333 0.00 0.00 0.00 3.51
3296 12206 7.559486 TGTTATCTAAGTGAGTGATGATGCTT 58.441 34.615 0.00 0.00 0.00 3.91
3297 12207 7.117285 TGTTATCTAAGTGAGTGATGATGCT 57.883 36.000 0.00 0.00 0.00 3.79
3298 12208 7.518052 GCTTGTTATCTAAGTGAGTGATGATGC 60.518 40.741 0.00 0.00 0.00 3.91
3299 12209 7.042187 GGCTTGTTATCTAAGTGAGTGATGATG 60.042 40.741 0.00 0.00 0.00 3.07
3300 12210 6.989169 GGCTTGTTATCTAAGTGAGTGATGAT 59.011 38.462 0.00 0.00 0.00 2.45
3301 12211 6.341316 GGCTTGTTATCTAAGTGAGTGATGA 58.659 40.000 0.00 0.00 0.00 2.92
3302 12212 5.233050 CGGCTTGTTATCTAAGTGAGTGATG 59.767 44.000 0.00 0.00 0.00 3.07
3303 12213 5.105310 ACGGCTTGTTATCTAAGTGAGTGAT 60.105 40.000 0.00 0.00 0.00 3.06
3304 12214 4.219944 ACGGCTTGTTATCTAAGTGAGTGA 59.780 41.667 0.00 0.00 0.00 3.41
3305 12215 4.495422 ACGGCTTGTTATCTAAGTGAGTG 58.505 43.478 0.00 0.00 0.00 3.51
3306 12216 4.381718 GGACGGCTTGTTATCTAAGTGAGT 60.382 45.833 0.00 0.00 0.00 3.41
3307 12217 4.113354 GGACGGCTTGTTATCTAAGTGAG 58.887 47.826 0.00 0.00 0.00 3.51
3308 12218 3.428452 CGGACGGCTTGTTATCTAAGTGA 60.428 47.826 0.00 0.00 0.00 3.41
3309 12219 2.858344 CGGACGGCTTGTTATCTAAGTG 59.142 50.000 0.00 0.00 0.00 3.16
3310 12220 2.159142 CCGGACGGCTTGTTATCTAAGT 60.159 50.000 0.00 0.00 0.00 2.24
3311 12221 2.159142 ACCGGACGGCTTGTTATCTAAG 60.159 50.000 9.46 0.00 39.32 2.18
3312 12222 1.826720 ACCGGACGGCTTGTTATCTAA 59.173 47.619 9.46 0.00 39.32 2.10
3313 12223 1.135527 CACCGGACGGCTTGTTATCTA 59.864 52.381 9.46 0.00 39.32 1.98
3314 12224 0.108329 CACCGGACGGCTTGTTATCT 60.108 55.000 9.46 0.00 39.32 1.98
3315 12225 0.108520 TCACCGGACGGCTTGTTATC 60.109 55.000 9.46 0.00 39.32 1.75
3316 12226 0.390735 GTCACCGGACGGCTTGTTAT 60.391 55.000 9.46 0.00 39.32 1.89
3317 12227 1.005867 GTCACCGGACGGCTTGTTA 60.006 57.895 9.46 0.00 39.32 2.41
3318 12228 2.280592 GTCACCGGACGGCTTGTT 60.281 61.111 9.46 0.00 39.32 2.83
3319 12229 4.309950 GGTCACCGGACGGCTTGT 62.310 66.667 9.46 0.00 45.28 3.16
3320 12230 3.818121 TTGGTCACCGGACGGCTTG 62.818 63.158 9.46 2.72 45.28 4.01
3321 12231 2.406002 ATTTGGTCACCGGACGGCTT 62.406 55.000 9.46 0.00 45.28 4.35
3322 12232 1.546589 TATTTGGTCACCGGACGGCT 61.547 55.000 9.46 0.00 45.28 5.52
3323 12233 0.463116 ATATTTGGTCACCGGACGGC 60.463 55.000 9.46 0.00 45.28 5.68
3324 12234 1.578583 GATATTTGGTCACCGGACGG 58.421 55.000 9.46 9.56 45.28 4.79
3325 12235 1.578583 GGATATTTGGTCACCGGACG 58.421 55.000 9.46 0.00 45.28 4.79
3326 12236 1.476291 GGGGATATTTGGTCACCGGAC 60.476 57.143 9.46 0.00 43.55 4.79
3327 12237 0.841289 GGGGATATTTGGTCACCGGA 59.159 55.000 9.46 0.00 27.74 5.14
3328 12238 0.179001 GGGGGATATTTGGTCACCGG 60.179 60.000 0.00 0.00 40.19 5.28
3329 12239 0.534203 CGGGGGATATTTGGTCACCG 60.534 60.000 0.00 0.00 40.19 4.94
3330 12240 0.549469 ACGGGGGATATTTGGTCACC 59.451 55.000 0.00 0.00 38.49 4.02
3331 12241 1.064979 ACACGGGGGATATTTGGTCAC 60.065 52.381 0.00 0.00 0.00 3.67
3332 12242 1.210967 GACACGGGGGATATTTGGTCA 59.789 52.381 0.00 0.00 0.00 4.02
3333 12243 1.808891 CGACACGGGGGATATTTGGTC 60.809 57.143 0.00 0.00 0.00 4.02
3334 12244 0.179468 CGACACGGGGGATATTTGGT 59.821 55.000 0.00 0.00 0.00 3.67
3335 12245 1.164041 GCGACACGGGGGATATTTGG 61.164 60.000 0.00 0.00 0.00 3.28
3336 12246 1.164041 GGCGACACGGGGGATATTTG 61.164 60.000 0.00 0.00 0.00 2.32
3337 12247 1.147600 GGCGACACGGGGGATATTT 59.852 57.895 0.00 0.00 0.00 1.40
3338 12248 2.814835 GGGCGACACGGGGGATATT 61.815 63.158 0.00 0.00 0.00 1.28
3339 12249 3.239253 GGGCGACACGGGGGATAT 61.239 66.667 0.00 0.00 0.00 1.63
3374 12284 1.920532 GTGGGGATAGGGTTCCACC 59.079 63.158 0.00 0.00 42.66 4.61
3375 12285 1.920532 GGTGGGGATAGGGTTCCAC 59.079 63.158 0.00 0.00 46.41 4.02
3376 12286 1.691337 CGGTGGGGATAGGGTTCCA 60.691 63.158 0.00 0.00 37.53 3.53
3377 12287 3.116137 GCGGTGGGGATAGGGTTCC 62.116 68.421 0.00 0.00 34.83 3.62
3378 12288 2.509422 GCGGTGGGGATAGGGTTC 59.491 66.667 0.00 0.00 0.00 3.62
3379 12289 3.094498 GGCGGTGGGGATAGGGTT 61.094 66.667 0.00 0.00 0.00 4.11
3417 12327 4.451150 TCCACCGCCGTCATCAGC 62.451 66.667 0.00 0.00 0.00 4.26
3418 12328 2.202797 CTCCACCGCCGTCATCAG 60.203 66.667 0.00 0.00 0.00 2.90
3419 12329 3.770040 CCTCCACCGCCGTCATCA 61.770 66.667 0.00 0.00 0.00 3.07
3420 12330 3.310860 AACCTCCACCGCCGTCATC 62.311 63.158 0.00 0.00 0.00 2.92
3421 12331 3.310860 GAACCTCCACCGCCGTCAT 62.311 63.158 0.00 0.00 0.00 3.06
3422 12332 3.998672 GAACCTCCACCGCCGTCA 61.999 66.667 0.00 0.00 0.00 4.35
3423 12333 4.754667 GGAACCTCCACCGCCGTC 62.755 72.222 0.00 0.00 36.28 4.79
3445 12355 2.746277 CCAAAGGAACGCGGGAGG 60.746 66.667 12.47 0.00 0.00 4.30
3446 12356 2.746277 CCCAAAGGAACGCGGGAG 60.746 66.667 12.47 0.00 41.62 4.30
3447 12357 3.562232 ACCCAAAGGAACGCGGGA 61.562 61.111 12.47 0.00 41.62 5.14
3448 12358 3.361977 CACCCAAAGGAACGCGGG 61.362 66.667 12.47 0.80 44.88 6.13
3449 12359 2.281208 TCACCCAAAGGAACGCGG 60.281 61.111 12.47 0.00 36.73 6.46
3450 12360 2.325082 CCTCACCCAAAGGAACGCG 61.325 63.158 3.53 3.53 35.83 6.01
3451 12361 2.626780 GCCTCACCCAAAGGAACGC 61.627 63.158 0.00 0.00 35.83 4.84
3452 12362 2.325082 CGCCTCACCCAAAGGAACG 61.325 63.158 0.00 0.00 35.83 3.95
3453 12363 1.971695 CCGCCTCACCCAAAGGAAC 60.972 63.158 0.00 0.00 35.83 3.62
3454 12364 2.434331 CCGCCTCACCCAAAGGAA 59.566 61.111 0.00 0.00 35.83 3.36
3455 12365 3.646715 CCCGCCTCACCCAAAGGA 61.647 66.667 0.00 0.00 35.83 3.36
3456 12366 3.920093 GACCCGCCTCACCCAAAGG 62.920 68.421 0.00 0.00 40.04 3.11
3457 12367 2.359975 GACCCGCCTCACCCAAAG 60.360 66.667 0.00 0.00 0.00 2.77
3458 12368 3.172106 TGACCCGCCTCACCCAAA 61.172 61.111 0.00 0.00 0.00 3.28
3459 12369 3.948719 GTGACCCGCCTCACCCAA 61.949 66.667 0.33 0.00 35.44 4.12
3461 12371 4.699522 GTGTGACCCGCCTCACCC 62.700 72.222 7.90 0.00 40.02 4.61
3463 12373 4.295119 ACGTGTGACCCGCCTCAC 62.295 66.667 0.00 4.22 40.98 3.51
3464 12374 4.293648 CACGTGTGACCCGCCTCA 62.294 66.667 7.58 0.00 0.00 3.86
3469 12379 4.293648 TGAGCCACGTGTGACCCG 62.294 66.667 15.65 0.00 0.00 5.28
3470 12380 2.357517 CTGAGCCACGTGTGACCC 60.358 66.667 15.65 0.00 0.00 4.46
3471 12381 2.357517 CCTGAGCCACGTGTGACC 60.358 66.667 15.65 1.26 0.00 4.02
3472 12382 2.357517 CCCTGAGCCACGTGTGAC 60.358 66.667 15.65 3.47 0.00 3.67
3473 12383 3.625897 CCCCTGAGCCACGTGTGA 61.626 66.667 15.65 0.00 0.00 3.58
3474 12384 3.883744 GACCCCTGAGCCACGTGTG 62.884 68.421 15.65 7.24 0.00 3.82
3475 12385 3.626924 GACCCCTGAGCCACGTGT 61.627 66.667 15.65 0.00 0.00 4.49
3476 12386 4.394712 GGACCCCTGAGCCACGTG 62.395 72.222 9.08 9.08 0.00 4.49
3477 12387 4.640690 AGGACCCCTGAGCCACGT 62.641 66.667 0.00 0.00 29.57 4.49
3478 12388 3.775654 GAGGACCCCTGAGCCACG 61.776 72.222 0.00 0.00 31.76 4.94
3479 12389 3.403558 GGAGGACCCCTGAGCCAC 61.404 72.222 0.00 0.00 31.76 5.01
3480 12390 3.615811 AGGAGGACCCCTGAGCCA 61.616 66.667 1.01 0.00 34.68 4.75
3481 12391 2.766229 GAGGAGGACCCCTGAGCC 60.766 72.222 6.27 0.00 36.49 4.70
3482 12392 2.766229 GGAGGAGGACCCCTGAGC 60.766 72.222 6.27 0.00 36.49 4.26
3483 12393 2.041405 GGGAGGAGGACCCCTGAG 60.041 72.222 6.27 0.00 41.38 3.35
3489 12399 0.263172 TCAGATCAGGGAGGAGGACC 59.737 60.000 0.00 0.00 0.00 4.46
3490 12400 1.703411 CTCAGATCAGGGAGGAGGAC 58.297 60.000 0.00 0.00 0.00 3.85
3491 12401 0.105760 GCTCAGATCAGGGAGGAGGA 60.106 60.000 10.02 0.00 0.00 3.71
3492 12402 1.120795 GGCTCAGATCAGGGAGGAGG 61.121 65.000 10.02 0.00 0.00 4.30
3493 12403 1.462731 CGGCTCAGATCAGGGAGGAG 61.463 65.000 10.02 0.00 0.00 3.69
3494 12404 1.456518 CGGCTCAGATCAGGGAGGA 60.457 63.158 10.02 0.00 0.00 3.71
3495 12405 1.743321 GACGGCTCAGATCAGGGAGG 61.743 65.000 10.02 0.00 0.00 4.30
3496 12406 1.039785 TGACGGCTCAGATCAGGGAG 61.040 60.000 0.00 0.00 0.00 4.30
3497 12407 0.397675 ATGACGGCTCAGATCAGGGA 60.398 55.000 0.00 0.00 0.00 4.20
3498 12408 0.467384 AATGACGGCTCAGATCAGGG 59.533 55.000 0.00 0.00 0.00 4.45
3499 12409 1.579698 CAATGACGGCTCAGATCAGG 58.420 55.000 0.00 0.00 0.00 3.86
3500 12410 0.935898 GCAATGACGGCTCAGATCAG 59.064 55.000 0.00 0.00 0.00 2.90
3501 12411 0.807275 CGCAATGACGGCTCAGATCA 60.807 55.000 0.00 0.00 0.00 2.92
3502 12412 1.930100 CGCAATGACGGCTCAGATC 59.070 57.895 0.00 0.00 0.00 2.75
3503 12413 4.115279 CGCAATGACGGCTCAGAT 57.885 55.556 0.00 0.00 0.00 2.90
3531 12441 4.933064 GTCGGCGGCCTCAGATCG 62.933 72.222 18.34 1.53 0.00 3.69
3532 12442 4.933064 CGTCGGCGGCCTCAGATC 62.933 72.222 18.34 1.91 0.00 2.75
3553 12463 4.047125 ATCACCACCCCGCCAAGG 62.047 66.667 0.00 0.00 40.63 3.61
3554 12464 2.751436 CATCACCACCCCGCCAAG 60.751 66.667 0.00 0.00 0.00 3.61
3555 12465 4.358841 CCATCACCACCCCGCCAA 62.359 66.667 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.