Multiple sequence alignment - TraesCS4A01G486900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G486900 chr4A 100.000 4289 0 0 1 4289 739732596 739736884 0.000000e+00 7921.0
1 TraesCS4A01G486900 chr4A 97.137 2305 43 6 1523 3824 742130629 742132913 0.000000e+00 3869.0
2 TraesCS4A01G486900 chr4A 96.438 1544 26 12 1 1523 742127831 742129366 0.000000e+00 2519.0
3 TraesCS4A01G486900 chr4A 98.294 469 8 0 3821 4289 742132939 742133407 0.000000e+00 822.0
4 TraesCS4A01G486900 chr4A 88.050 477 46 7 3821 4289 739654207 739654680 4.850000e-154 555.0
5 TraesCS4A01G486900 chr4A 86.503 489 45 11 3821 4289 741482138 741481651 6.360000e-143 518.0
6 TraesCS4A01G486900 chr4A 86.583 477 46 8 3821 4289 742059486 742059952 1.060000e-140 510.0
7 TraesCS4A01G486900 chr4A 84.674 522 62 14 1900 2404 739862866 739863386 4.950000e-139 505.0
8 TraesCS4A01G486900 chr4A 86.071 481 47 10 3821 4289 739869720 739870192 2.300000e-137 499.0
9 TraesCS4A01G486900 chr4A 88.652 423 27 5 1094 1499 741588322 741588740 2.980000e-136 496.0
10 TraesCS4A01G486900 chr4A 84.674 522 38 12 1009 1491 739860754 739861272 2.320000e-132 483.0
11 TraesCS4A01G486900 chr4A 84.674 522 38 12 1009 1491 740566539 740567057 2.320000e-132 483.0
12 TraesCS4A01G486900 chr4A 86.547 446 37 7 1094 1522 740268994 740269433 1.810000e-128 470.0
13 TraesCS4A01G486900 chr4A 81.620 642 50 17 911 1495 740926712 740927342 1.810000e-128 470.0
14 TraesCS4A01G486900 chr4A 86.547 446 34 8 1094 1522 740303147 740303583 6.490000e-128 468.0
15 TraesCS4A01G486900 chr4A 90.169 356 32 2 3934 4289 740939959 740940311 1.090000e-125 460.0
16 TraesCS4A01G486900 chr4A 86.099 446 39 7 1094 1522 740346399 740346838 3.910000e-125 459.0
17 TraesCS4A01G486900 chr4A 87.317 410 32 4 1095 1488 740022632 740022227 6.540000e-123 451.0
18 TraesCS4A01G486900 chr4A 88.301 359 36 4 3934 4289 740453193 740452838 3.960000e-115 425.0
19 TraesCS4A01G486900 chr4A 85.432 405 31 11 3309 3687 739869298 739869700 3.110000e-106 396.0
20 TraesCS4A01G486900 chr4A 85.185 405 26 12 3309 3685 741482560 741482162 6.730000e-103 385.0
21 TraesCS4A01G486900 chr4A 94.422 251 12 2 1243 1492 741796545 741796296 6.730000e-103 385.0
22 TraesCS4A01G486900 chr4A 92.520 254 19 0 3309 3562 740453729 740453476 8.760000e-97 364.0
23 TraesCS4A01G486900 chr4A 83.373 415 38 13 3309 3695 741813941 741813530 5.280000e-94 355.0
24 TraesCS4A01G486900 chr4A 91.339 254 22 0 3309 3562 740939266 740939519 8.830000e-92 348.0
25 TraesCS4A01G486900 chr4A 91.532 248 21 0 3309 3556 740306781 740307028 4.110000e-90 342.0
26 TraesCS4A01G486900 chr4A 91.129 248 22 0 3309 3556 740350129 740350376 1.910000e-88 337.0
27 TraesCS4A01G486900 chr4A 86.243 189 23 2 2537 2725 740573031 740573216 7.270000e-48 202.0
28 TraesCS4A01G486900 chr4A 93.233 133 8 1 2815 2946 740929202 740929334 1.220000e-45 195.0
29 TraesCS4A01G486900 chr4A 96.491 114 4 0 3686 3799 399148809 399148696 5.660000e-44 189.0
30 TraesCS4A01G486900 chr4A 89.130 138 13 2 2826 2963 739863597 739863732 2.050000e-38 171.0
31 TraesCS4A01G486900 chr4A 85.417 144 11 5 2815 2957 740573214 740573348 1.610000e-29 141.0
32 TraesCS4A01G486900 chr4A 93.684 95 5 1 2723 2816 742131906 742131812 1.610000e-29 141.0
33 TraesCS4A01G486900 chr4A 89.333 75 8 0 110 184 740207035 740206961 1.270000e-15 95.3
34 TraesCS4A01G486900 chr4A 97.959 49 1 0 1529 1577 740568747 740568795 7.640000e-13 86.1
35 TraesCS4A01G486900 chr7A 87.815 476 47 4 3821 4289 3205885 3205414 8.110000e-152 547.0
36 TraesCS4A01G486900 chr7A 95.181 332 16 0 1568 1899 595931352 595931021 3.800000e-145 525.0
37 TraesCS4A01G486900 chr7A 86.994 469 47 6 3832 4289 2115407 2114942 2.290000e-142 516.0
38 TraesCS4A01G486900 chr7A 85.892 482 49 12 3821 4289 1994391 1993916 2.980000e-136 496.0
39 TraesCS4A01G486900 chr7A 80.629 604 58 14 937 1491 2002682 2002089 3.090000e-111 412.0
40 TraesCS4A01G486900 chr7A 85.819 409 30 8 3309 3689 2115835 2115427 3.990000e-110 409.0
41 TraesCS4A01G486900 chr7A 85.536 401 33 8 3312 3687 1994811 1994411 3.110000e-106 396.0
42 TraesCS4A01G486900 chr7A 84.300 414 45 6 1094 1491 3634617 3634208 1.870000e-103 387.0
43 TraesCS4A01G486900 chr7A 85.879 347 25 6 3309 3631 3206323 3205977 8.830000e-92 348.0
44 TraesCS4A01G486900 chr7A 86.598 194 24 1 2532 2725 3308670 3308861 3.360000e-51 213.0
45 TraesCS4A01G486900 chr7A 95.614 114 5 0 3686 3799 716413900 716413787 2.630000e-42 183.0
46 TraesCS4A01G486900 chr7A 95.575 113 5 0 3686 3798 28120811 28120699 9.470000e-42 182.0
47 TraesCS4A01G486900 chr7A 75.989 379 29 17 766 1098 3214891 3214529 5.780000e-29 139.0
48 TraesCS4A01G486900 chr7A 91.667 96 7 1 2404 2498 452372165 452372070 9.680000e-27 132.0
49 TraesCS4A01G486900 chr7A 77.419 217 35 8 630 838 2003036 2002826 2.710000e-22 117.0
50 TraesCS4A01G486900 chr7A 88.421 95 10 1 2723 2816 41045002 41045096 3.510000e-21 113.0
51 TraesCS4A01G486900 chr2B 96.330 327 9 3 1575 1899 142777142 142777467 6.310000e-148 534.0
52 TraesCS4A01G486900 chr2B 90.076 131 12 1 2404 2533 177119690 177119560 7.380000e-38 169.0
53 TraesCS4A01G486900 chr2B 90.076 131 12 1 2404 2533 556218370 556218500 7.380000e-38 169.0
54 TraesCS4A01G486900 chr4B 95.745 329 13 1 1571 1899 432888011 432887684 2.940000e-146 529.0
55 TraesCS4A01G486900 chr4B 93.333 120 4 1 183 302 506918496 506918611 1.590000e-39 174.0
56 TraesCS4A01G486900 chr3B 95.468 331 15 0 1569 1899 578607088 578607418 2.940000e-146 529.0
57 TraesCS4A01G486900 chr3B 94.955 337 16 1 1563 1899 55920192 55920527 1.060000e-145 527.0
58 TraesCS4A01G486900 chr3B 89.244 344 15 4 1578 1899 668785394 668785737 1.110000e-110 411.0
59 TraesCS4A01G486900 chr3B 93.333 120 7 1 3686 3804 192017621 192017740 4.410000e-40 176.0
60 TraesCS4A01G486900 chr7B 95.455 330 14 1 1571 1899 58450380 58450051 3.800000e-145 525.0
61 TraesCS4A01G486900 chr7B 94.017 117 7 0 186 302 675348369 675348485 1.230000e-40 178.0
62 TraesCS4A01G486900 chr7B 91.473 129 10 1 2404 2531 627652935 627652807 4.410000e-40 176.0
63 TraesCS4A01G486900 chr7B 90.909 132 10 2 2404 2533 697421898 697422029 4.410000e-40 176.0
64 TraesCS4A01G486900 chr5B 95.706 326 14 0 1574 1899 432663501 432663826 3.800000e-145 525.0
65 TraesCS4A01G486900 chr5B 95.614 114 1 1 189 302 671328842 671328733 3.410000e-41 180.0
66 TraesCS4A01G486900 chr5B 95.614 114 1 1 189 302 671344587 671344478 3.410000e-41 180.0
67 TraesCS4A01G486900 chr5B 90.526 95 7 1 2723 2817 291385742 291385834 1.620000e-24 124.0
68 TraesCS4A01G486900 chr5B 87.234 94 11 1 2725 2818 572353190 572353098 5.870000e-19 106.0
69 TraesCS4A01G486900 chr1A 94.940 336 16 1 1564 1899 119682011 119681677 3.800000e-145 525.0
70 TraesCS4A01G486900 chr1A 90.840 131 11 1 2404 2533 555209149 555209019 1.590000e-39 174.0
71 TraesCS4A01G486900 chr1A 92.000 125 6 1 178 302 486045765 486045885 5.700000e-39 172.0
72 TraesCS4A01G486900 chr7D 86.333 439 35 11 1097 1514 2611839 2611405 5.060000e-124 455.0
73 TraesCS4A01G486900 chr7D 91.824 159 7 4 2954 3107 192763089 192762932 2.600000e-52 217.0
74 TraesCS4A01G486900 chr7D 86.911 191 22 2 1094 1284 3795041 3794854 1.210000e-50 211.0
75 TraesCS4A01G486900 chr7D 96.694 121 4 0 2826 2946 2568997 2568877 7.270000e-48 202.0
76 TraesCS4A01G486900 chr7D 84.127 189 28 1 2536 2724 2569194 2569008 9.470000e-42 182.0
77 TraesCS4A01G486900 chr7D 91.579 95 8 0 630 724 3795519 3795425 9.680000e-27 132.0
78 TraesCS4A01G486900 chr7D 86.364 110 4 2 766 865 3897055 3897163 4.530000e-20 110.0
79 TraesCS4A01G486900 chr7D 94.545 55 3 0 1523 1577 3900822 3900876 7.640000e-13 86.1
80 TraesCS4A01G486900 chr7D 92.727 55 3 1 110 163 2411692 2411746 1.280000e-10 78.7
81 TraesCS4A01G486900 chr2D 92.453 159 6 4 2954 3107 117579669 117579512 5.580000e-54 222.0
82 TraesCS4A01G486900 chr2D 91.824 159 7 4 2954 3107 292075616 292075773 2.600000e-52 217.0
83 TraesCS4A01G486900 chr2D 91.772 158 8 3 2954 3107 466987477 466987321 9.340000e-52 215.0
84 TraesCS4A01G486900 chr5D 92.405 158 7 3 2954 3107 242073167 242073011 2.010000e-53 220.0
85 TraesCS4A01G486900 chr5D 94.828 116 4 1 3686 3799 439277727 439277612 3.410000e-41 180.0
86 TraesCS4A01G486900 chr5D 87.963 108 7 2 2723 2824 465001323 465001216 5.820000e-24 122.0
87 TraesCS4A01G486900 chr5D 88.889 99 6 1 2723 2816 465001225 465001323 2.710000e-22 117.0
88 TraesCS4A01G486900 chr4D 91.824 159 8 3 2954 3107 375224194 375224352 2.600000e-52 217.0
89 TraesCS4A01G486900 chr4D 91.195 159 9 3 2954 3107 98657257 98657099 1.210000e-50 211.0
90 TraesCS4A01G486900 chr1D 91.824 159 7 4 2954 3107 39901515 39901358 2.600000e-52 217.0
91 TraesCS4A01G486900 chr1D 95.652 115 5 0 3686 3800 433100873 433100759 7.320000e-43 185.0
92 TraesCS4A01G486900 chr1D 93.333 120 4 3 183 302 368493814 368493699 1.590000e-39 174.0
93 TraesCS4A01G486900 chr3A 95.575 113 5 0 3686 3798 596289392 596289280 9.470000e-42 182.0
94 TraesCS4A01G486900 chr3A 89.552 134 13 1 2404 2537 712690163 712690031 7.380000e-38 169.0
95 TraesCS4A01G486900 chr1B 90.647 139 10 3 2404 2541 271215851 271215987 9.470000e-42 182.0
96 TraesCS4A01G486900 chr1B 94.915 118 2 1 185 302 681792489 681792376 9.470000e-42 182.0
97 TraesCS4A01G486900 chr1B 86.170 94 9 2 2723 2816 548194484 548194395 9.820000e-17 99.0
98 TraesCS4A01G486900 chr6A 94.737 114 6 0 3686 3799 6897561 6897674 1.230000e-40 178.0
99 TraesCS4A01G486900 chr6A 85.417 96 9 3 2723 2816 608978304 608978212 1.270000e-15 95.3
100 TraesCS4A01G486900 chr3D 94.118 119 3 3 184 302 412099942 412099828 1.230000e-40 178.0
101 TraesCS4A01G486900 chr6B 90.909 132 11 1 2404 2534 719762171 719762302 4.410000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G486900 chr4A 739732596 739736884 4288 False 7921.000000 7921 100.000000 1 4289 1 chr4A.!!$F2 4288
1 TraesCS4A01G486900 chr4A 742127831 742133407 5576 False 2403.333333 3869 97.289667 1 4289 3 chr4A.!!$F14 4288
2 TraesCS4A01G486900 chr4A 741481651 741482560 909 True 451.500000 518 85.844000 3309 4289 2 chr4A.!!$R8 980
3 TraesCS4A01G486900 chr4A 739869298 739870192 894 False 447.500000 499 85.751500 3309 4289 2 chr4A.!!$F7 980
4 TraesCS4A01G486900 chr4A 740303147 740307028 3881 False 405.000000 468 89.039500 1094 3556 2 chr4A.!!$F8 2462
5 TraesCS4A01G486900 chr4A 740939266 740940311 1045 False 404.000000 460 90.754000 3309 4289 2 chr4A.!!$F13 980
6 TraesCS4A01G486900 chr4A 740346399 740350376 3977 False 398.000000 459 88.614000 1094 3556 2 chr4A.!!$F9 2462
7 TraesCS4A01G486900 chr4A 740452838 740453729 891 True 394.500000 425 90.410500 3309 4289 2 chr4A.!!$R7 980
8 TraesCS4A01G486900 chr4A 739860754 739863732 2978 False 386.333333 505 86.159333 1009 2963 3 chr4A.!!$F6 1954
9 TraesCS4A01G486900 chr4A 740926712 740929334 2622 False 332.500000 470 87.426500 911 2946 2 chr4A.!!$F12 2035
10 TraesCS4A01G486900 chr4A 740566539 740568795 2256 False 284.550000 483 91.316500 1009 1577 2 chr4A.!!$F10 568
11 TraesCS4A01G486900 chr7A 2114942 2115835 893 True 462.500000 516 86.406500 3309 4289 2 chr7A.!!$R9 980
12 TraesCS4A01G486900 chr7A 3205414 3206323 909 True 447.500000 547 86.847000 3309 4289 2 chr7A.!!$R10 980
13 TraesCS4A01G486900 chr7A 1993916 1994811 895 True 446.000000 496 85.714000 3312 4289 2 chr7A.!!$R7 977
14 TraesCS4A01G486900 chr7A 2002089 2003036 947 True 264.500000 412 79.024000 630 1491 2 chr7A.!!$R8 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 954 0.108615 GCACGACAGTAGAGGCACAT 60.109 55.0 0.0 0.0 0.00 3.21 F
1705 4426 0.321653 CCCTTCCGTCCAGTCAAAGG 60.322 60.0 0.0 0.0 36.95 3.11 F
1706 4427 0.396811 CCTTCCGTCCAGTCAAAGGT 59.603 55.0 0.0 0.0 33.36 3.50 F
1739 4460 0.541863 AGGCCCATGTGTACTGTAGC 59.458 55.0 0.0 0.0 0.00 3.58 F
3106 7406 0.898326 TGAGCTACGCCCAGTTCTCA 60.898 55.0 0.0 0.0 38.22 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 4429 0.178975 ATGGGCCTTTGACGGTCAAA 60.179 50.000 28.70 28.70 43.37 2.69 R
2964 7111 1.072806 AGTCTAACCCGGGTTGGTTTC 59.927 52.381 42.81 31.13 46.45 2.78 R
2965 7112 1.142936 AGTCTAACCCGGGTTGGTTT 58.857 50.000 42.81 29.28 46.45 3.27 R
3284 7584 2.030805 GTGGGTGTTCACTCATTTCAGC 60.031 50.000 8.77 0.00 34.98 4.26 R
3971 8738 3.642377 CACCAATGATATTGCCCCATGAA 59.358 43.478 0.00 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 1.271127 GGCTGCTTCCTCCTCTCCTT 61.271 60.000 0.00 0.00 0.00 3.36
383 393 1.994507 CTCTCTGGCCCTGGAAGCT 60.995 63.158 0.00 0.00 0.00 3.74
797 840 6.018262 GTGTTTGAAACTATGTAGTGTGAGCA 60.018 38.462 9.69 0.00 36.50 4.26
799 842 4.245660 TGAAACTATGTAGTGTGAGCAGC 58.754 43.478 0.00 0.00 36.50 5.25
881 954 0.108615 GCACGACAGTAGAGGCACAT 60.109 55.000 0.00 0.00 0.00 3.21
885 958 1.800655 CGACAGTAGAGGCACATGAGC 60.801 57.143 6.57 6.57 0.00 4.26
930 1022 3.316573 GAGGCACCACTTCTCCCCG 62.317 68.421 0.00 0.00 0.00 5.73
1437 2011 0.459585 TTATTGCCGACGAGCAGGAC 60.460 55.000 10.21 0.00 45.13 3.85
1566 4287 4.091509 CGCTCACCATAACTTTGTGTCTAC 59.908 45.833 0.00 0.00 0.00 2.59
1700 4421 0.322546 AAATGCCCTTCCGTCCAGTC 60.323 55.000 0.00 0.00 0.00 3.51
1701 4422 1.488705 AATGCCCTTCCGTCCAGTCA 61.489 55.000 0.00 0.00 0.00 3.41
1702 4423 1.488705 ATGCCCTTCCGTCCAGTCAA 61.489 55.000 0.00 0.00 0.00 3.18
1703 4424 1.072505 GCCCTTCCGTCCAGTCAAA 59.927 57.895 0.00 0.00 0.00 2.69
1704 4425 0.955919 GCCCTTCCGTCCAGTCAAAG 60.956 60.000 0.00 0.00 0.00 2.77
1705 4426 0.321653 CCCTTCCGTCCAGTCAAAGG 60.322 60.000 0.00 0.00 36.95 3.11
1706 4427 0.396811 CCTTCCGTCCAGTCAAAGGT 59.603 55.000 0.00 0.00 33.36 3.50
1707 4428 1.608283 CCTTCCGTCCAGTCAAAGGTC 60.608 57.143 0.00 0.00 33.36 3.85
1708 4429 1.344763 CTTCCGTCCAGTCAAAGGTCT 59.655 52.381 0.00 0.00 0.00 3.85
1709 4430 1.420430 TCCGTCCAGTCAAAGGTCTT 58.580 50.000 0.00 0.00 0.00 3.01
1710 4431 1.766496 TCCGTCCAGTCAAAGGTCTTT 59.234 47.619 0.00 0.00 0.00 2.52
1739 4460 0.541863 AGGCCCATGTGTACTGTAGC 59.458 55.000 0.00 0.00 0.00 3.58
1757 4478 1.070134 AGCAGACGGAAAGTGCTACAA 59.930 47.619 0.00 0.00 45.72 2.41
1968 5520 2.103042 CAGGTTGCCAGCGCTAGAC 61.103 63.158 10.99 6.33 35.36 2.59
2239 6323 2.267642 GCCGGCATCCACACTACA 59.732 61.111 24.80 0.00 0.00 2.74
2440 6541 6.676237 TTTCGATGAAACTAGCATATGCAA 57.324 33.333 28.62 7.46 45.16 4.08
2451 6552 6.038356 ACTAGCATATGCAAGCAAAAATGTC 58.962 36.000 28.62 0.00 45.16 3.06
2523 6624 2.670934 AAGGCTGCAGTTCTGGCG 60.671 61.111 16.64 0.00 42.68 5.69
2748 6849 4.905456 TCCCTCCGATCCATATTACTTGTT 59.095 41.667 0.00 0.00 0.00 2.83
2756 6857 6.562270 CGATCCATATTACTTGTTGCTCGAAC 60.562 42.308 0.00 0.00 34.84 3.95
2770 6871 2.226912 GCTCGAACGGATGTATCTAGCT 59.773 50.000 0.00 0.00 0.00 3.32
2978 7125 1.868713 AAAAAGAAACCAACCCGGGT 58.131 45.000 24.16 24.16 45.04 5.28
2995 7295 1.407025 GGGTTAGACTAGCCTTGGCAC 60.407 57.143 14.54 1.16 32.89 5.01
3106 7406 0.898326 TGAGCTACGCCCAGTTCTCA 60.898 55.000 0.00 0.00 38.22 3.27
3202 7502 3.319755 CTTCCGCATGAACAAATTGCTT 58.680 40.909 0.00 0.00 34.23 3.91
3236 7536 6.302535 TGTATTTTAGATCCTCCAACCGAA 57.697 37.500 0.00 0.00 0.00 4.30
3598 8115 0.889186 ACGTGCAACTGGTGGATTCC 60.889 55.000 0.00 0.00 31.75 3.01
3702 8242 5.376625 TGTTCATGCTCTAGACTTTTTGGT 58.623 37.500 0.00 0.00 0.00 3.67
3746 8286 2.825532 GGCTGGGCTTTCTTTCAATACA 59.174 45.455 0.00 0.00 0.00 2.29
3971 8738 1.159664 AGGAGCTGGTGGAGAGGTT 59.840 57.895 0.00 0.00 0.00 3.50
4081 8848 2.350522 CTCCCTCAACCGTGATTTCAG 58.649 52.381 0.00 0.00 31.85 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
753 796 5.053978 ACACTTGGAATTGGACTCTCTTT 57.946 39.130 0.00 0.00 0.00 2.52
754 797 4.713792 ACACTTGGAATTGGACTCTCTT 57.286 40.909 0.00 0.00 0.00 2.85
755 798 4.713792 AACACTTGGAATTGGACTCTCT 57.286 40.909 0.00 0.00 0.00 3.10
756 799 4.821805 TCAAACACTTGGAATTGGACTCTC 59.178 41.667 0.00 0.00 33.01 3.20
757 800 4.792068 TCAAACACTTGGAATTGGACTCT 58.208 39.130 0.00 0.00 33.01 3.24
797 840 3.010138 TGTTAATTACCTTGGCCTCTGCT 59.990 43.478 3.32 0.00 37.74 4.24
799 842 5.123979 GTCTTGTTAATTACCTTGGCCTCTG 59.876 44.000 3.32 0.00 0.00 3.35
881 954 2.110352 CATGCATCGCACTGGCTCA 61.110 57.895 0.00 0.00 43.04 4.26
885 958 1.585297 TATCACATGCATCGCACTGG 58.415 50.000 0.00 0.00 43.04 4.00
886 959 3.002965 ACATTATCACATGCATCGCACTG 59.997 43.478 0.00 0.00 43.04 3.66
1523 2104 1.209504 GTGGCTAGTGGTATGCCTTGA 59.790 52.381 0.16 0.00 46.23 3.02
1525 2106 0.178068 CGTGGCTAGTGGTATGCCTT 59.822 55.000 0.16 0.00 46.23 4.35
1580 4301 1.648116 AGGGGCAGAAATGCAAATGT 58.352 45.000 2.29 0.00 36.33 2.71
1659 4380 3.190744 TCTGAGTAGTGACTTAACGGCAG 59.809 47.826 0.00 0.00 35.45 4.85
1669 4390 3.618690 AGGGCATTTCTGAGTAGTGAC 57.381 47.619 0.00 0.00 0.00 3.67
1708 4429 0.178975 ATGGGCCTTTGACGGTCAAA 60.179 50.000 28.70 28.70 43.37 2.69
1709 4430 0.893270 CATGGGCCTTTGACGGTCAA 60.893 55.000 19.07 19.07 34.03 3.18
1710 4431 1.303236 CATGGGCCTTTGACGGTCA 60.303 57.895 6.76 6.76 0.00 4.02
1711 4432 1.303317 ACATGGGCCTTTGACGGTC 60.303 57.895 4.53 0.00 0.00 4.79
1712 4433 1.603455 CACATGGGCCTTTGACGGT 60.603 57.895 4.53 0.00 0.00 4.83
1713 4434 0.322098 TACACATGGGCCTTTGACGG 60.322 55.000 4.53 1.49 0.00 4.79
1714 4435 0.802494 GTACACATGGGCCTTTGACG 59.198 55.000 4.53 2.78 0.00 4.35
1715 4436 1.812571 CAGTACACATGGGCCTTTGAC 59.187 52.381 4.53 0.00 0.00 3.18
1716 4437 1.423541 ACAGTACACATGGGCCTTTGA 59.576 47.619 4.53 0.00 0.00 2.69
1739 4460 5.220662 CCAATATTGTAGCACTTTCCGTCTG 60.221 44.000 14.25 0.00 0.00 3.51
1757 4478 5.570320 ACTGTAGCACTTTCCAACCAATAT 58.430 37.500 0.00 0.00 0.00 1.28
1968 5520 3.491792 GGAGGAGATACAAAGAAGGAGCG 60.492 52.174 0.00 0.00 0.00 5.03
2239 6323 1.000506 CCACGGGGAAATACGATCGAT 59.999 52.381 24.34 8.18 35.59 3.59
2492 6593 3.636300 TGCAGCCTTGTGTAGTCATTTTT 59.364 39.130 0.00 0.00 0.00 1.94
2678 6779 1.381872 GGGCTGCCTCCTAGTCTCA 60.382 63.158 19.68 0.00 0.00 3.27
2748 6849 2.031069 GCTAGATACATCCGTTCGAGCA 60.031 50.000 0.00 0.00 37.84 4.26
2770 6871 2.671888 GTCGATCGAGCGGATGTATCTA 59.328 50.000 24.18 0.00 34.82 1.98
2782 6884 5.734963 CGATCCATATTACTTGTCGATCGAG 59.265 44.000 20.09 9.81 46.42 4.04
2961 7108 2.175284 TCTAACCCGGGTTGGTTTCTTT 59.825 45.455 42.81 20.64 46.45 2.52
2964 7111 1.072806 AGTCTAACCCGGGTTGGTTTC 59.927 52.381 42.81 31.13 46.45 2.78
2965 7112 1.142936 AGTCTAACCCGGGTTGGTTT 58.857 50.000 42.81 29.28 46.45 3.27
2978 7125 4.367039 AAAAGTGCCAAGGCTAGTCTAA 57.633 40.909 12.96 0.00 42.51 2.10
3202 7502 5.417580 GGATCTAAAATACAAGCCAACACCA 59.582 40.000 0.00 0.00 0.00 4.17
3284 7584 2.030805 GTGGGTGTTCACTCATTTCAGC 60.031 50.000 8.77 0.00 34.98 4.26
3516 8006 2.679934 GCAGCCCCAAATTTTGCGC 61.680 57.895 0.00 0.00 0.00 6.09
3971 8738 3.642377 CACCAATGATATTGCCCCATGAA 59.358 43.478 0.00 0.00 0.00 2.57
4081 8848 4.072088 CGCTGCGAACCACCGAAC 62.072 66.667 18.66 0.00 0.00 3.95
4189 8956 4.699522 GCCCAGTGGACGGGTCAC 62.700 72.222 11.95 0.00 46.40 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.