Multiple sequence alignment - TraesCS4A01G484200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G484200 chr4A 100.000 2730 0 0 1 2730 738745369 738748098 0.000000e+00 5042.0
1 TraesCS4A01G484200 chr7D 90.951 1304 56 26 1429 2721 4995804 4994552 0.000000e+00 1698.0
2 TraesCS4A01G484200 chr7D 89.666 329 32 2 1413 1739 5034894 5034566 4.200000e-113 418.0
3 TraesCS4A01G484200 chr7D 78.079 812 74 47 999 1724 5036754 5035961 4.200000e-113 418.0
4 TraesCS4A01G484200 chr7D 89.723 253 11 7 954 1200 4996230 4995987 2.640000e-80 309.0
5 TraesCS4A01G484200 chr7D 86.792 106 10 2 1916 2021 5034476 5034375 6.180000e-22 115.0
6 TraesCS4A01G484200 chr7D 93.182 44 2 1 1853 1895 5035886 5035843 2.270000e-06 63.9
7 TraesCS4A01G484200 chr7A 91.063 1007 42 26 1420 2409 4898625 4897650 0.000000e+00 1317.0
8 TraesCS4A01G484200 chr7A 98.305 236 4 0 2486 2721 4897342 4897107 5.440000e-112 414.0
9 TraesCS4A01G484200 chr7A 88.060 335 36 3 1414 1744 6132753 6132419 7.090000e-106 394.0
10 TraesCS4A01G484200 chr7A 87.234 329 40 2 1413 1739 5614357 5614029 9.230000e-100 374.0
11 TraesCS4A01G484200 chr7A 82.118 425 38 22 1475 1893 6303395 6303003 2.030000e-86 329.0
12 TraesCS4A01G484200 chr7A 89.140 221 23 1 1475 1695 6279884 6279665 9.630000e-70 274.0
13 TraesCS4A01G484200 chr7A 86.792 212 14 7 996 1199 4899135 4898930 9.840000e-55 224.0
14 TraesCS4A01G484200 chr7A 86.087 115 10 4 1910 2021 5613918 5613807 4.780000e-23 119.0
15 TraesCS4A01G484200 chr7A 79.897 194 12 13 175 358 4899875 4899699 1.720000e-22 117.0
16 TraesCS4A01G484200 chr7A 91.837 49 4 0 487 535 4899593 4899545 4.880000e-08 69.4
17 TraesCS4A01G484200 chrUn 83.394 277 38 6 2444 2718 29669689 29669959 1.620000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G484200 chr4A 738745369 738748098 2729 False 5042.000 5042 100.00000 1 2730 1 chr4A.!!$F1 2729
1 TraesCS4A01G484200 chr7D 4994552 4996230 1678 True 1003.500 1698 90.33700 954 2721 2 chr7D.!!$R1 1767
2 TraesCS4A01G484200 chr7D 5034375 5036754 2379 True 253.725 418 86.92975 999 2021 4 chr7D.!!$R2 1022
3 TraesCS4A01G484200 chr7A 4897107 4899875 2768 True 428.280 1317 89.57880 175 2721 5 chr7A.!!$R4 2546
4 TraesCS4A01G484200 chr7A 5613807 5614357 550 True 246.500 374 86.66050 1413 2021 2 chr7A.!!$R5 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.030101 CACGGTGCGACCATTTTGTT 59.97 50.0 0.00 0.0 38.47 2.83 F
69 70 0.030101 CGGTGCGACCATTTTGTTGT 59.97 50.0 6.21 0.0 38.47 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 3039 0.767998 GGCCATTCCTCCCCTAGAAG 59.232 60.0 0.00 0.0 0.00 2.85 R
1769 3321 0.837691 TCTCCTGGGAGCACACATGT 60.838 55.0 11.51 0.0 41.71 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.039920 ACCGGGTGAACTTTTTACTTAGT 57.960 39.130 6.32 0.00 0.00 2.24
24 25 6.173427 ACCGGGTGAACTTTTTACTTAGTA 57.827 37.500 6.32 0.00 0.00 1.82
25 26 6.591001 ACCGGGTGAACTTTTTACTTAGTAA 58.409 36.000 6.32 0.03 0.00 2.24
26 27 7.053498 ACCGGGTGAACTTTTTACTTAGTAAA 58.947 34.615 12.92 12.92 36.40 2.01
27 28 7.555914 ACCGGGTGAACTTTTTACTTAGTAAAA 59.444 33.333 21.91 21.91 43.37 1.52
53 54 8.958119 ATAGTTTAATATGATGTTCACACGGT 57.042 30.769 0.00 0.00 0.00 4.83
54 55 7.072177 AGTTTAATATGATGTTCACACGGTG 57.928 36.000 6.58 6.58 34.45 4.94
55 56 5.478233 TTAATATGATGTTCACACGGTGC 57.522 39.130 8.30 0.00 32.98 5.01
56 57 1.355005 TATGATGTTCACACGGTGCG 58.645 50.000 8.30 0.00 32.98 5.34
57 58 0.320334 ATGATGTTCACACGGTGCGA 60.320 50.000 8.30 0.46 32.98 5.10
58 59 1.218875 TGATGTTCACACGGTGCGAC 61.219 55.000 8.30 5.20 32.98 5.19
59 60 1.897398 GATGTTCACACGGTGCGACC 61.897 60.000 8.30 0.00 32.98 4.79
60 61 2.586635 GTTCACACGGTGCGACCA 60.587 61.111 8.30 0.00 38.47 4.02
61 62 1.959226 GTTCACACGGTGCGACCAT 60.959 57.895 8.30 0.00 38.47 3.55
62 63 1.227704 TTCACACGGTGCGACCATT 60.228 52.632 8.30 0.00 38.47 3.16
63 64 0.816018 TTCACACGGTGCGACCATTT 60.816 50.000 8.30 0.00 38.47 2.32
64 65 0.816018 TCACACGGTGCGACCATTTT 60.816 50.000 8.30 0.00 38.47 1.82
65 66 0.660005 CACACGGTGCGACCATTTTG 60.660 55.000 8.30 0.00 38.47 2.44
66 67 1.098712 ACACGGTGCGACCATTTTGT 61.099 50.000 8.30 1.41 38.47 2.83
67 68 0.030101 CACGGTGCGACCATTTTGTT 59.970 50.000 0.00 0.00 38.47 2.83
68 69 0.030101 ACGGTGCGACCATTTTGTTG 59.970 50.000 6.21 0.00 38.47 3.33
69 70 0.030101 CGGTGCGACCATTTTGTTGT 59.970 50.000 6.21 0.00 38.47 3.32
70 71 1.535015 CGGTGCGACCATTTTGTTGTT 60.535 47.619 6.21 0.00 38.47 2.83
71 72 1.857837 GGTGCGACCATTTTGTTGTTG 59.142 47.619 0.00 0.00 38.42 3.33
72 73 2.480416 GGTGCGACCATTTTGTTGTTGA 60.480 45.455 0.00 0.00 38.42 3.18
73 74 3.182967 GTGCGACCATTTTGTTGTTGAA 58.817 40.909 0.00 0.00 0.00 2.69
74 75 3.614616 GTGCGACCATTTTGTTGTTGAAA 59.385 39.130 0.00 0.00 0.00 2.69
75 76 4.092091 GTGCGACCATTTTGTTGTTGAAAA 59.908 37.500 0.00 0.00 0.00 2.29
76 77 4.328440 TGCGACCATTTTGTTGTTGAAAAG 59.672 37.500 0.00 0.00 0.00 2.27
77 78 4.564769 GCGACCATTTTGTTGTTGAAAAGA 59.435 37.500 0.00 0.00 0.00 2.52
78 79 5.234116 GCGACCATTTTGTTGTTGAAAAGAT 59.766 36.000 0.00 0.00 0.00 2.40
79 80 6.639212 CGACCATTTTGTTGTTGAAAAGATG 58.361 36.000 0.00 0.00 0.00 2.90
80 81 6.475076 CGACCATTTTGTTGTTGAAAAGATGA 59.525 34.615 0.00 0.00 0.00 2.92
81 82 7.009999 CGACCATTTTGTTGTTGAAAAGATGAA 59.990 33.333 0.00 0.00 0.00 2.57
82 83 7.973601 ACCATTTTGTTGTTGAAAAGATGAAC 58.026 30.769 0.00 0.00 0.00 3.18
83 84 7.605691 ACCATTTTGTTGTTGAAAAGATGAACA 59.394 29.630 0.00 0.00 0.00 3.18
84 85 8.449397 CCATTTTGTTGTTGAAAAGATGAACAA 58.551 29.630 0.00 0.00 37.27 2.83
85 86 9.823098 CATTTTGTTGTTGAAAAGATGAACAAA 57.177 25.926 0.00 0.00 40.34 2.83
100 101 9.933723 AAGATGAACAAATTTATGGAAAAGGAG 57.066 29.630 0.00 0.00 0.00 3.69
101 102 9.093458 AGATGAACAAATTTATGGAAAAGGAGT 57.907 29.630 0.00 0.00 0.00 3.85
102 103 9.143631 GATGAACAAATTTATGGAAAAGGAGTG 57.856 33.333 0.00 0.00 0.00 3.51
103 104 8.243961 TGAACAAATTTATGGAAAAGGAGTGA 57.756 30.769 0.00 0.00 0.00 3.41
104 105 8.869109 TGAACAAATTTATGGAAAAGGAGTGAT 58.131 29.630 0.00 0.00 0.00 3.06
105 106 9.710900 GAACAAATTTATGGAAAAGGAGTGATT 57.289 29.630 0.00 0.00 0.00 2.57
109 110 8.552083 AATTTATGGAAAAGGAGTGATTTTGC 57.448 30.769 0.00 0.00 38.15 3.68
111 112 5.750352 ATGGAAAAGGAGTGATTTTGCAT 57.250 34.783 10.97 10.97 46.77 3.96
113 114 6.855763 TGGAAAAGGAGTGATTTTGCATAT 57.144 33.333 1.89 0.00 41.24 1.78
114 115 7.243604 TGGAAAAGGAGTGATTTTGCATATT 57.756 32.000 1.89 0.00 41.24 1.28
115 116 7.678837 TGGAAAAGGAGTGATTTTGCATATTT 58.321 30.769 1.89 0.00 41.24 1.40
116 117 7.603404 TGGAAAAGGAGTGATTTTGCATATTTG 59.397 33.333 1.89 0.00 41.24 2.32
117 118 7.064966 GGAAAAGGAGTGATTTTGCATATTTGG 59.935 37.037 0.00 0.00 37.75 3.28
118 119 5.603170 AGGAGTGATTTTGCATATTTGGG 57.397 39.130 0.00 0.00 0.00 4.12
119 120 4.122046 GGAGTGATTTTGCATATTTGGGC 58.878 43.478 0.00 0.00 0.00 5.36
120 121 4.141869 GGAGTGATTTTGCATATTTGGGCT 60.142 41.667 0.00 0.00 0.00 5.19
121 122 4.761975 AGTGATTTTGCATATTTGGGCTG 58.238 39.130 0.00 0.00 0.00 4.85
122 123 3.872771 GTGATTTTGCATATTTGGGCTGG 59.127 43.478 0.00 0.00 0.00 4.85
123 124 3.118334 TGATTTTGCATATTTGGGCTGGG 60.118 43.478 0.00 0.00 0.00 4.45
124 125 0.540923 TTTGCATATTTGGGCTGGGC 59.459 50.000 0.00 0.00 0.00 5.36
139 140 4.360643 GGCCAGAATGCCCAATGA 57.639 55.556 0.00 0.00 46.11 2.57
140 141 2.594342 GGCCAGAATGCCCAATGAA 58.406 52.632 0.00 0.00 46.11 2.57
141 142 1.125633 GGCCAGAATGCCCAATGAAT 58.874 50.000 0.00 0.00 46.11 2.57
142 143 1.069668 GGCCAGAATGCCCAATGAATC 59.930 52.381 0.00 0.00 46.11 2.52
143 144 1.269413 GCCAGAATGCCCAATGAATCG 60.269 52.381 0.00 0.00 31.97 3.34
144 145 2.300433 CCAGAATGCCCAATGAATCGA 58.700 47.619 0.00 0.00 31.97 3.59
145 146 2.889045 CCAGAATGCCCAATGAATCGAT 59.111 45.455 0.00 0.00 31.97 3.59
146 147 3.305131 CCAGAATGCCCAATGAATCGATG 60.305 47.826 0.00 0.00 31.97 3.84
147 148 2.889045 AGAATGCCCAATGAATCGATGG 59.111 45.455 0.00 0.00 0.00 3.51
148 149 2.662535 ATGCCCAATGAATCGATGGA 57.337 45.000 0.00 0.00 36.27 3.41
149 150 2.662535 TGCCCAATGAATCGATGGAT 57.337 45.000 0.00 0.00 36.27 3.41
150 151 2.232399 TGCCCAATGAATCGATGGATG 58.768 47.619 0.00 0.00 36.27 3.51
151 152 1.068055 GCCCAATGAATCGATGGATGC 60.068 52.381 0.00 0.00 36.27 3.91
152 153 1.198408 CCCAATGAATCGATGGATGCG 59.802 52.381 0.00 0.00 36.27 4.73
153 154 1.400629 CCAATGAATCGATGGATGCGC 60.401 52.381 0.00 0.00 36.27 6.09
154 155 1.264826 CAATGAATCGATGGATGCGCA 59.735 47.619 14.96 14.96 29.89 6.09
155 156 0.870393 ATGAATCGATGGATGCGCAC 59.130 50.000 14.90 6.86 29.89 5.34
156 157 0.461693 TGAATCGATGGATGCGCACA 60.462 50.000 14.90 7.96 29.89 4.57
157 158 0.234106 GAATCGATGGATGCGCACAG 59.766 55.000 14.90 0.14 31.83 3.66
158 159 0.462581 AATCGATGGATGCGCACAGT 60.463 50.000 14.90 0.00 31.83 3.55
159 160 1.156034 ATCGATGGATGCGCACAGTG 61.156 55.000 14.90 4.00 0.00 3.66
160 161 2.406401 GATGGATGCGCACAGTGC 59.594 61.111 14.90 16.21 40.69 4.40
161 162 2.045634 ATGGATGCGCACAGTGCT 60.046 55.556 23.15 4.58 42.25 4.40
162 163 2.044832 GATGGATGCGCACAGTGCTC 62.045 60.000 23.15 16.27 42.25 4.26
163 164 2.435586 GGATGCGCACAGTGCTCT 60.436 61.111 23.15 7.48 42.25 4.09
164 165 2.459442 GGATGCGCACAGTGCTCTC 61.459 63.158 23.15 15.30 42.25 3.20
165 166 1.739196 GATGCGCACAGTGCTCTCA 60.739 57.895 23.15 17.12 42.25 3.27
166 167 1.694018 GATGCGCACAGTGCTCTCAG 61.694 60.000 23.15 8.41 42.25 3.35
167 168 3.786586 GCGCACAGTGCTCTCAGC 61.787 66.667 23.15 14.57 42.25 4.26
168 169 3.117171 CGCACAGTGCTCTCAGCC 61.117 66.667 23.15 0.00 42.25 4.85
169 170 2.346739 GCACAGTGCTCTCAGCCT 59.653 61.111 18.92 0.00 41.51 4.58
170 171 1.741032 GCACAGTGCTCTCAGCCTC 60.741 63.158 18.92 0.00 41.51 4.70
171 172 1.079266 CACAGTGCTCTCAGCCTCC 60.079 63.158 0.00 0.00 41.51 4.30
172 173 2.289532 ACAGTGCTCTCAGCCTCCC 61.290 63.158 0.00 0.00 41.51 4.30
173 174 2.121385 AGTGCTCTCAGCCTCCCA 59.879 61.111 0.00 0.00 41.51 4.37
178 179 3.057547 CTCTCAGCCTCCCACGTCG 62.058 68.421 0.00 0.00 0.00 5.12
181 182 4.778415 CAGCCTCCCACGTCGTCG 62.778 72.222 0.00 0.00 43.34 5.12
264 265 2.370824 AATCGATCGACGGACGGACG 62.371 60.000 22.06 6.64 42.82 4.79
271 272 1.154073 GACGGACGGACGGAAGAAG 60.154 63.158 6.00 0.00 38.39 2.85
272 273 1.580845 GACGGACGGACGGAAGAAGA 61.581 60.000 6.00 0.00 38.39 2.87
273 274 1.174712 ACGGACGGACGGAAGAAGAA 61.175 55.000 6.00 0.00 38.39 2.52
274 275 0.456312 CGGACGGACGGAAGAAGAAG 60.456 60.000 0.00 0.00 0.00 2.85
275 276 0.886563 GGACGGACGGAAGAAGAAGA 59.113 55.000 0.00 0.00 0.00 2.87
276 277 1.271656 GGACGGACGGAAGAAGAAGAA 59.728 52.381 0.00 0.00 0.00 2.52
277 278 2.288640 GGACGGACGGAAGAAGAAGAAA 60.289 50.000 0.00 0.00 0.00 2.52
278 279 2.730404 GACGGACGGAAGAAGAAGAAAC 59.270 50.000 0.00 0.00 0.00 2.78
279 280 2.364647 ACGGACGGAAGAAGAAGAAACT 59.635 45.455 0.00 0.00 0.00 2.66
280 281 2.987821 CGGACGGAAGAAGAAGAAACTC 59.012 50.000 0.00 0.00 0.00 3.01
281 282 3.327626 GGACGGAAGAAGAAGAAACTCC 58.672 50.000 0.00 0.00 0.00 3.85
282 283 3.007074 GGACGGAAGAAGAAGAAACTCCT 59.993 47.826 0.00 0.00 0.00 3.69
305 306 1.334869 CATGGCGATTTGGTTCTAGCC 59.665 52.381 0.00 0.00 44.38 3.93
306 307 0.618458 TGGCGATTTGGTTCTAGCCT 59.382 50.000 5.85 0.00 44.42 4.58
307 308 1.004277 TGGCGATTTGGTTCTAGCCTT 59.996 47.619 5.85 0.00 44.42 4.35
310 321 2.681097 GCGATTTGGTTCTAGCCTTCCT 60.681 50.000 0.00 0.00 0.00 3.36
336 347 4.390264 CGATTATTCCCCTTCCTTCCTTC 58.610 47.826 0.00 0.00 0.00 3.46
343 354 1.153549 CTTCCTTCCTTCTCGCCCG 60.154 63.158 0.00 0.00 0.00 6.13
345 356 4.840005 CCTTCCTTCTCGCCCGCC 62.840 72.222 0.00 0.00 0.00 6.13
346 357 4.840005 CTTCCTTCTCGCCCGCCC 62.840 72.222 0.00 0.00 0.00 6.13
369 380 3.426568 GCTGCTCGCAGTCCCAAC 61.427 66.667 19.00 0.00 45.24 3.77
371 382 4.680237 TGCTCGCAGTCCCAACCG 62.680 66.667 0.00 0.00 0.00 4.44
394 405 3.211963 GGCTTCCGCGCATCCAAT 61.212 61.111 8.75 0.00 36.88 3.16
410 425 0.527113 CAATTCCAATCTGCACGCCA 59.473 50.000 0.00 0.00 0.00 5.69
411 426 0.527565 AATTCCAATCTGCACGCCAC 59.472 50.000 0.00 0.00 0.00 5.01
412 427 1.315257 ATTCCAATCTGCACGCCACC 61.315 55.000 0.00 0.00 0.00 4.61
413 428 3.803082 CCAATCTGCACGCCACCG 61.803 66.667 0.00 0.00 41.14 4.94
414 429 4.465512 CAATCTGCACGCCACCGC 62.466 66.667 0.00 0.00 38.22 5.68
447 462 2.371259 GCCCAAGGAGGAGGAGGAC 61.371 68.421 0.00 0.00 41.22 3.85
449 464 1.690985 CCAAGGAGGAGGAGGACCC 60.691 68.421 0.00 0.00 41.22 4.46
451 466 0.547712 CAAGGAGGAGGAGGACCCAA 60.548 60.000 0.00 0.00 37.41 4.12
452 467 0.252927 AAGGAGGAGGAGGACCCAAG 60.253 60.000 0.00 0.00 37.41 3.61
453 468 1.690985 GGAGGAGGAGGACCCAAGG 60.691 68.421 0.00 0.00 37.41 3.61
454 469 1.392534 GAGGAGGAGGACCCAAGGA 59.607 63.158 0.00 0.00 37.41 3.36
455 470 0.689412 GAGGAGGAGGACCCAAGGAG 60.689 65.000 0.00 0.00 37.41 3.69
456 471 2.371259 GGAGGAGGACCCAAGGAGC 61.371 68.421 0.00 0.00 37.41 4.70
457 472 1.613630 GAGGAGGACCCAAGGAGCA 60.614 63.158 0.00 0.00 37.41 4.26
458 473 1.151810 AGGAGGACCCAAGGAGCAA 60.152 57.895 0.00 0.00 37.41 3.91
459 474 1.204113 AGGAGGACCCAAGGAGCAAG 61.204 60.000 0.00 0.00 37.41 4.01
461 476 0.693049 GAGGACCCAAGGAGCAAGAA 59.307 55.000 0.00 0.00 0.00 2.52
463 478 0.609406 GGACCCAAGGAGCAAGAACC 60.609 60.000 0.00 0.00 0.00 3.62
464 479 0.110486 GACCCAAGGAGCAAGAACCA 59.890 55.000 0.00 0.00 0.00 3.67
465 480 0.178990 ACCCAAGGAGCAAGAACCAC 60.179 55.000 0.00 0.00 0.00 4.16
467 482 1.237285 CCAAGGAGCAAGAACCACCG 61.237 60.000 0.00 0.00 0.00 4.94
468 483 1.073199 AAGGAGCAAGAACCACCGG 59.927 57.895 0.00 0.00 0.00 5.28
469 484 2.359975 GGAGCAAGAACCACCGGG 60.360 66.667 6.32 0.00 41.29 5.73
470 485 2.359975 GAGCAAGAACCACCGGGG 60.360 66.667 6.32 0.00 44.81 5.73
471 486 4.660938 AGCAAGAACCACCGGGGC 62.661 66.667 6.32 0.00 42.05 5.80
472 487 4.660938 GCAAGAACCACCGGGGCT 62.661 66.667 6.32 0.00 42.05 5.19
474 489 3.647771 AAGAACCACCGGGGCTCC 61.648 66.667 6.32 0.00 42.05 4.70
475 490 4.658786 AGAACCACCGGGGCTCCT 62.659 66.667 6.32 0.00 42.05 3.69
476 491 4.410400 GAACCACCGGGGCTCCTG 62.410 72.222 6.32 0.00 42.05 3.86
521 536 2.183478 TGCTTCGCCTCTTTCAATCA 57.817 45.000 0.00 0.00 0.00 2.57
526 541 3.893326 TCGCCTCTTTCAATCAGATCA 57.107 42.857 0.00 0.00 0.00 2.92
535 550 6.279123 TCTTTCAATCAGATCAGAGGATTCG 58.721 40.000 0.00 0.00 32.67 3.34
536 551 3.987547 TCAATCAGATCAGAGGATTCGC 58.012 45.455 0.00 0.00 32.67 4.70
538 553 0.670706 TCAGATCAGAGGATTCGCCG 59.329 55.000 0.00 0.00 43.43 6.46
542 573 0.315568 ATCAGAGGATTCGCCGCTAC 59.684 55.000 0.00 0.00 45.92 3.58
550 581 2.474816 GATTCGCCGCTACTGATTCTT 58.525 47.619 0.00 0.00 0.00 2.52
551 582 3.552273 GGATTCGCCGCTACTGATTCTTA 60.552 47.826 0.00 0.00 0.00 2.10
556 587 3.310246 GCCGCTACTGATTCTTACTAGC 58.690 50.000 0.00 0.00 0.00 3.42
557 588 3.243434 GCCGCTACTGATTCTTACTAGCA 60.243 47.826 0.00 0.00 31.84 3.49
558 589 4.291783 CCGCTACTGATTCTTACTAGCAC 58.708 47.826 0.00 0.00 31.84 4.40
559 590 4.202020 CCGCTACTGATTCTTACTAGCACA 60.202 45.833 0.00 0.00 31.84 4.57
560 591 4.735822 CGCTACTGATTCTTACTAGCACAC 59.264 45.833 0.00 0.00 31.84 3.82
564 595 3.250744 TGATTCTTACTAGCACACGCAC 58.749 45.455 0.00 0.00 42.27 5.34
568 599 3.057019 TCTTACTAGCACACGCACAAAG 58.943 45.455 0.00 0.00 42.27 2.77
578 609 1.518102 CACGCACAAAGCAAACATGTC 59.482 47.619 0.00 0.00 46.13 3.06
582 613 2.481795 GCACAAAGCAAACATGTCCAGT 60.482 45.455 0.00 0.00 44.79 4.00
586 617 5.809562 CACAAAGCAAACATGTCCAGTAAAA 59.190 36.000 0.00 0.00 0.00 1.52
588 619 6.312672 ACAAAGCAAACATGTCCAGTAAAAAC 59.687 34.615 0.00 0.00 0.00 2.43
590 621 5.348164 AGCAAACATGTCCAGTAAAAACAC 58.652 37.500 0.00 0.00 0.00 3.32
592 623 5.752955 GCAAACATGTCCAGTAAAAACACAT 59.247 36.000 0.00 0.00 0.00 3.21
593 624 6.292274 GCAAACATGTCCAGTAAAAACACATG 60.292 38.462 0.00 8.46 46.50 3.21
596 627 4.804608 TGTCCAGTAAAAACACATGTCG 57.195 40.909 0.00 0.00 0.00 4.35
599 630 2.570169 CAGTAAAAACACATGTCGCCG 58.430 47.619 0.00 0.00 0.00 6.46
600 631 1.069500 AGTAAAAACACATGTCGCCGC 60.069 47.619 0.00 0.00 0.00 6.53
601 632 1.069500 GTAAAAACACATGTCGCCGCT 60.069 47.619 0.00 0.00 0.00 5.52
603 634 0.515564 AAAACACATGTCGCCGCTAC 59.484 50.000 0.00 0.00 0.00 3.58
604 635 0.320421 AAACACATGTCGCCGCTACT 60.320 50.000 0.00 0.00 0.00 2.57
605 636 1.014044 AACACATGTCGCCGCTACTG 61.014 55.000 0.00 0.00 0.00 2.74
606 637 1.153842 CACATGTCGCCGCTACTGA 60.154 57.895 0.00 0.00 0.00 3.41
607 638 0.528466 CACATGTCGCCGCTACTGAT 60.528 55.000 0.00 0.00 0.00 2.90
608 639 0.175760 ACATGTCGCCGCTACTGATT 59.824 50.000 0.00 0.00 0.00 2.57
609 640 0.855349 CATGTCGCCGCTACTGATTC 59.145 55.000 0.00 0.00 0.00 2.52
611 642 0.530744 TGTCGCCGCTACTGATTCTT 59.469 50.000 0.00 0.00 0.00 2.52
612 643 0.924090 GTCGCCGCTACTGATTCTTG 59.076 55.000 0.00 0.00 0.00 3.02
614 645 0.924090 CGCCGCTACTGATTCTTGTC 59.076 55.000 0.00 0.00 0.00 3.18
616 647 2.197577 GCCGCTACTGATTCTTGTCTC 58.802 52.381 0.00 0.00 0.00 3.36
618 649 1.849219 CGCTACTGATTCTTGTCTCGC 59.151 52.381 0.00 0.00 0.00 5.03
620 651 3.242772 CGCTACTGATTCTTGTCTCGCTA 60.243 47.826 0.00 0.00 0.00 4.26
621 652 4.286910 GCTACTGATTCTTGTCTCGCTAG 58.713 47.826 0.00 0.00 0.00 3.42
622 653 4.035792 GCTACTGATTCTTGTCTCGCTAGA 59.964 45.833 0.00 0.00 0.00 2.43
623 654 5.278266 GCTACTGATTCTTGTCTCGCTAGAT 60.278 44.000 0.00 0.00 33.30 1.98
624 655 6.072948 GCTACTGATTCTTGTCTCGCTAGATA 60.073 42.308 0.00 0.00 33.30 1.98
626 657 6.500041 ACTGATTCTTGTCTCGCTAGATAAC 58.500 40.000 0.00 0.00 33.30 1.89
627 658 5.833082 TGATTCTTGTCTCGCTAGATAACC 58.167 41.667 0.00 0.00 33.30 2.85
628 659 5.359860 TGATTCTTGTCTCGCTAGATAACCA 59.640 40.000 0.00 0.00 33.30 3.67
629 660 5.654603 TTCTTGTCTCGCTAGATAACCAA 57.345 39.130 0.00 0.00 33.30 3.67
630 661 4.995124 TCTTGTCTCGCTAGATAACCAAC 58.005 43.478 0.00 0.00 33.30 3.77
634 665 2.357009 TCTCGCTAGATAACCAACCGAC 59.643 50.000 0.00 0.00 0.00 4.79
639 685 1.201424 AGATAACCAACCGACCCCTC 58.799 55.000 0.00 0.00 0.00 4.30
640 686 0.906775 GATAACCAACCGACCCCTCA 59.093 55.000 0.00 0.00 0.00 3.86
651 697 0.606673 GACCCCTCACCTGCAGTTTC 60.607 60.000 13.81 0.00 0.00 2.78
676 722 5.633830 CATCATCTGCACTTTGTTTACCT 57.366 39.130 0.00 0.00 0.00 3.08
677 723 5.634896 CATCATCTGCACTTTGTTTACCTC 58.365 41.667 0.00 0.00 0.00 3.85
678 724 4.713553 TCATCTGCACTTTGTTTACCTCA 58.286 39.130 0.00 0.00 0.00 3.86
679 725 5.316167 TCATCTGCACTTTGTTTACCTCAT 58.684 37.500 0.00 0.00 0.00 2.90
680 726 5.769662 TCATCTGCACTTTGTTTACCTCATT 59.230 36.000 0.00 0.00 0.00 2.57
683 729 5.008613 TCTGCACTTTGTTTACCTCATTCAC 59.991 40.000 0.00 0.00 0.00 3.18
684 730 4.219033 GCACTTTGTTTACCTCATTCACG 58.781 43.478 0.00 0.00 0.00 4.35
685 731 4.024387 GCACTTTGTTTACCTCATTCACGA 60.024 41.667 0.00 0.00 0.00 4.35
686 732 5.440685 CACTTTGTTTACCTCATTCACGAC 58.559 41.667 0.00 0.00 0.00 4.34
689 735 4.280436 TGTTTACCTCATTCACGACCAT 57.720 40.909 0.00 0.00 0.00 3.55
690 736 4.250464 TGTTTACCTCATTCACGACCATC 58.750 43.478 0.00 0.00 0.00 3.51
691 737 2.863401 TACCTCATTCACGACCATCG 57.137 50.000 0.00 0.00 46.93 3.84
692 738 0.175760 ACCTCATTCACGACCATCGG 59.824 55.000 2.97 0.00 45.59 4.18
701 747 2.674754 GACCATCGGGAGGGCAAA 59.325 61.111 0.00 0.00 35.25 3.68
702 748 1.452108 GACCATCGGGAGGGCAAAG 60.452 63.158 0.00 0.00 35.25 2.77
703 749 2.830370 CCATCGGGAGGGCAAAGC 60.830 66.667 0.00 0.00 35.59 3.51
704 750 2.045045 CATCGGGAGGGCAAAGCA 60.045 61.111 0.00 0.00 0.00 3.91
705 751 2.117156 CATCGGGAGGGCAAAGCAG 61.117 63.158 0.00 0.00 0.00 4.24
706 752 2.300967 ATCGGGAGGGCAAAGCAGA 61.301 57.895 0.00 0.00 0.00 4.26
707 753 1.639635 ATCGGGAGGGCAAAGCAGAT 61.640 55.000 0.00 0.00 0.00 2.90
708 754 2.117156 CGGGAGGGCAAAGCAGATG 61.117 63.158 0.00 0.00 0.00 2.90
709 755 1.304282 GGGAGGGCAAAGCAGATGA 59.696 57.895 0.00 0.00 0.00 2.92
710 756 1.034292 GGGAGGGCAAAGCAGATGAC 61.034 60.000 0.00 0.00 0.00 3.06
713 759 0.694771 AGGGCAAAGCAGATGACAGA 59.305 50.000 0.00 0.00 0.00 3.41
714 760 1.284198 AGGGCAAAGCAGATGACAGAT 59.716 47.619 0.00 0.00 0.00 2.90
715 761 2.097825 GGGCAAAGCAGATGACAGATT 58.902 47.619 0.00 0.00 0.00 2.40
716 762 2.159282 GGGCAAAGCAGATGACAGATTG 60.159 50.000 0.00 0.00 0.00 2.67
717 763 2.751259 GGCAAAGCAGATGACAGATTGA 59.249 45.455 0.00 0.00 0.00 2.57
718 764 3.380637 GGCAAAGCAGATGACAGATTGAT 59.619 43.478 0.00 0.00 0.00 2.57
719 765 4.577693 GGCAAAGCAGATGACAGATTGATA 59.422 41.667 0.00 0.00 0.00 2.15
720 766 5.505324 GGCAAAGCAGATGACAGATTGATAC 60.505 44.000 0.00 0.00 0.00 2.24
721 767 5.296283 GCAAAGCAGATGACAGATTGATACT 59.704 40.000 0.00 0.00 0.00 2.12
722 768 6.481313 GCAAAGCAGATGACAGATTGATACTA 59.519 38.462 0.00 0.00 0.00 1.82
723 769 7.307278 GCAAAGCAGATGACAGATTGATACTAG 60.307 40.741 0.00 0.00 0.00 2.57
724 770 7.594351 AAGCAGATGACAGATTGATACTAGA 57.406 36.000 0.00 0.00 0.00 2.43
725 771 7.779754 AGCAGATGACAGATTGATACTAGAT 57.220 36.000 0.00 0.00 0.00 1.98
726 772 8.876303 AGCAGATGACAGATTGATACTAGATA 57.124 34.615 0.00 0.00 0.00 1.98
727 773 8.739039 AGCAGATGACAGATTGATACTAGATAC 58.261 37.037 0.00 0.00 0.00 2.24
728 774 8.739039 GCAGATGACAGATTGATACTAGATACT 58.261 37.037 0.00 0.00 0.00 2.12
733 779 9.727859 TGACAGATTGATACTAGATACTACTCC 57.272 37.037 0.00 0.00 0.00 3.85
734 780 9.953565 GACAGATTGATACTAGATACTACTCCT 57.046 37.037 0.00 0.00 0.00 3.69
786 832 3.865571 TCTCCTGATGATCCATCCATCA 58.134 45.455 0.00 0.00 45.58 3.07
787 833 3.581770 TCTCCTGATGATCCATCCATCAC 59.418 47.826 0.00 0.00 43.67 3.06
788 834 3.583526 CTCCTGATGATCCATCCATCACT 59.416 47.826 0.00 0.00 43.67 3.41
789 835 4.755437 TCCTGATGATCCATCCATCACTA 58.245 43.478 0.00 0.00 43.67 2.74
790 836 5.157395 TCCTGATGATCCATCCATCACTAA 58.843 41.667 0.00 0.00 43.67 2.24
791 837 5.608015 TCCTGATGATCCATCCATCACTAAA 59.392 40.000 0.00 0.00 43.67 1.85
792 838 6.273965 TCCTGATGATCCATCCATCACTAAAT 59.726 38.462 0.00 0.00 43.67 1.40
793 839 7.458806 TCCTGATGATCCATCCATCACTAAATA 59.541 37.037 0.00 0.00 43.67 1.40
794 840 7.551974 CCTGATGATCCATCCATCACTAAATAC 59.448 40.741 0.00 0.00 43.67 1.89
795 841 7.397221 TGATGATCCATCCATCACTAAATACC 58.603 38.462 0.00 0.00 43.67 2.73
796 842 6.762077 TGATCCATCCATCACTAAATACCA 57.238 37.500 0.00 0.00 0.00 3.25
798 844 6.998074 TGATCCATCCATCACTAAATACCAAC 59.002 38.462 0.00 0.00 0.00 3.77
800 846 6.591935 TCCATCCATCACTAAATACCAACTC 58.408 40.000 0.00 0.00 0.00 3.01
804 850 7.016153 TCCATCACTAAATACCAACTCAACT 57.984 36.000 0.00 0.00 0.00 3.16
805 851 6.878923 TCCATCACTAAATACCAACTCAACTG 59.121 38.462 0.00 0.00 0.00 3.16
813 859 9.613428 CTAAATACCAACTCAACTGGAATCATA 57.387 33.333 0.00 0.00 37.40 2.15
814 860 8.877864 AAATACCAACTCAACTGGAATCATAA 57.122 30.769 0.00 0.00 37.40 1.90
847 893 8.980481 AAAATAGCCTGCACATATAAAGTAGT 57.020 30.769 0.00 0.00 0.00 2.73
850 896 5.529791 AGCCTGCACATATAAAGTAGTACG 58.470 41.667 0.00 0.00 0.00 3.67
851 897 5.068723 AGCCTGCACATATAAAGTAGTACGT 59.931 40.000 0.00 0.00 0.00 3.57
855 903 8.777413 CCTGCACATATAAAGTAGTACGTAGTA 58.223 37.037 6.02 6.02 45.11 1.82
868 916 2.453521 ACGTAGTATTGGGCAGTCAGA 58.546 47.619 0.00 0.00 41.94 3.27
869 917 3.031736 ACGTAGTATTGGGCAGTCAGAT 58.968 45.455 0.00 0.00 41.94 2.90
870 918 3.451178 ACGTAGTATTGGGCAGTCAGATT 59.549 43.478 0.00 0.00 41.94 2.40
871 919 4.051922 CGTAGTATTGGGCAGTCAGATTC 58.948 47.826 0.00 0.00 0.00 2.52
872 920 4.441495 CGTAGTATTGGGCAGTCAGATTCA 60.441 45.833 0.00 0.00 0.00 2.57
873 921 4.148128 AGTATTGGGCAGTCAGATTCAG 57.852 45.455 0.00 0.00 0.00 3.02
874 922 3.776969 AGTATTGGGCAGTCAGATTCAGA 59.223 43.478 0.00 0.00 0.00 3.27
875 923 2.775911 TTGGGCAGTCAGATTCAGAG 57.224 50.000 0.00 0.00 0.00 3.35
876 924 1.942776 TGGGCAGTCAGATTCAGAGA 58.057 50.000 0.00 0.00 0.00 3.10
877 925 2.259917 TGGGCAGTCAGATTCAGAGAA 58.740 47.619 0.00 0.00 0.00 2.87
878 926 2.842496 TGGGCAGTCAGATTCAGAGAAT 59.158 45.455 0.00 0.00 0.00 2.40
879 927 4.033009 TGGGCAGTCAGATTCAGAGAATA 58.967 43.478 0.00 0.00 0.00 1.75
880 928 4.471025 TGGGCAGTCAGATTCAGAGAATAA 59.529 41.667 0.00 0.00 0.00 1.40
881 929 5.055812 GGGCAGTCAGATTCAGAGAATAAG 58.944 45.833 0.00 0.00 0.00 1.73
882 930 5.396213 GGGCAGTCAGATTCAGAGAATAAGT 60.396 44.000 0.00 0.00 0.00 2.24
883 931 6.112058 GGCAGTCAGATTCAGAGAATAAGTT 58.888 40.000 0.00 0.00 0.00 2.66
884 932 6.036953 GGCAGTCAGATTCAGAGAATAAGTTG 59.963 42.308 0.00 0.00 0.00 3.16
885 933 6.456718 GCAGTCAGATTCAGAGAATAAGTTGC 60.457 42.308 0.00 0.00 0.00 4.17
886 934 6.592994 CAGTCAGATTCAGAGAATAAGTTGCA 59.407 38.462 0.00 0.00 0.00 4.08
887 935 7.118825 CAGTCAGATTCAGAGAATAAGTTGCAA 59.881 37.037 0.00 0.00 0.00 4.08
888 936 7.828223 AGTCAGATTCAGAGAATAAGTTGCAAT 59.172 33.333 0.59 0.00 0.00 3.56
889 937 7.909121 GTCAGATTCAGAGAATAAGTTGCAATG 59.091 37.037 0.59 0.00 0.00 2.82
890 938 7.066645 TCAGATTCAGAGAATAAGTTGCAATGG 59.933 37.037 0.59 0.00 0.00 3.16
891 939 6.888632 AGATTCAGAGAATAAGTTGCAATGGT 59.111 34.615 0.59 0.00 0.00 3.55
892 940 6.899393 TTCAGAGAATAAGTTGCAATGGTT 57.101 33.333 0.59 0.00 0.00 3.67
893 941 6.258230 TCAGAGAATAAGTTGCAATGGTTG 57.742 37.500 0.59 0.00 0.00 3.77
894 942 5.769662 TCAGAGAATAAGTTGCAATGGTTGT 59.230 36.000 0.59 0.00 0.00 3.32
895 943 6.265196 TCAGAGAATAAGTTGCAATGGTTGTT 59.735 34.615 0.59 1.69 0.00 2.83
896 944 6.364165 CAGAGAATAAGTTGCAATGGTTGTTG 59.636 38.462 0.59 0.00 0.00 3.33
897 945 5.540911 AGAATAAGTTGCAATGGTTGTTGG 58.459 37.500 0.59 0.00 0.00 3.77
898 946 5.304101 AGAATAAGTTGCAATGGTTGTTGGA 59.696 36.000 0.59 0.00 0.00 3.53
899 947 5.743636 ATAAGTTGCAATGGTTGTTGGAT 57.256 34.783 0.59 0.00 29.37 3.41
900 948 4.420522 AAGTTGCAATGGTTGTTGGATT 57.579 36.364 0.59 0.00 29.37 3.01
901 949 4.420522 AGTTGCAATGGTTGTTGGATTT 57.579 36.364 0.59 0.00 29.37 2.17
902 950 4.779696 AGTTGCAATGGTTGTTGGATTTT 58.220 34.783 0.59 0.00 29.37 1.82
903 951 4.815846 AGTTGCAATGGTTGTTGGATTTTC 59.184 37.500 0.59 0.00 29.37 2.29
904 952 3.388308 TGCAATGGTTGTTGGATTTTCG 58.612 40.909 0.00 0.00 0.00 3.46
905 953 3.181471 TGCAATGGTTGTTGGATTTTCGT 60.181 39.130 0.00 0.00 0.00 3.85
906 954 3.807071 GCAATGGTTGTTGGATTTTCGTT 59.193 39.130 0.00 0.00 0.00 3.85
907 955 4.084589 GCAATGGTTGTTGGATTTTCGTTC 60.085 41.667 0.00 0.00 0.00 3.95
916 964 5.008217 TGTTGGATTTTCGTTCGTTTCAGAT 59.992 36.000 0.00 0.00 0.00 2.90
919 967 6.595794 TGGATTTTCGTTCGTTTCAGATAAC 58.404 36.000 0.00 0.00 0.00 1.89
922 970 7.749126 GGATTTTCGTTCGTTTCAGATAACAAT 59.251 33.333 0.00 0.00 0.00 2.71
923 971 8.655378 ATTTTCGTTCGTTTCAGATAACAATC 57.345 30.769 0.00 0.00 0.00 2.67
924 972 6.772770 TTCGTTCGTTTCAGATAACAATCA 57.227 33.333 0.00 0.00 0.00 2.57
927 975 7.233689 TCGTTCGTTTCAGATAACAATCAATG 58.766 34.615 0.00 0.00 0.00 2.82
929 977 5.879237 TCGTTTCAGATAACAATCAATGGC 58.121 37.500 0.00 0.00 0.00 4.40
933 981 6.839124 TTCAGATAACAATCAATGGCTGTT 57.161 33.333 6.23 6.23 37.13 3.16
934 982 6.839124 TCAGATAACAATCAATGGCTGTTT 57.161 33.333 6.27 0.00 35.09 2.83
936 984 6.209192 TCAGATAACAATCAATGGCTGTTTGT 59.791 34.615 6.27 0.00 45.68 2.83
937 985 6.529125 CAGATAACAATCAATGGCTGTTTGTC 59.471 38.462 6.27 6.04 43.88 3.18
938 986 4.669206 AACAATCAATGGCTGTTTGTCA 57.331 36.364 4.32 0.00 43.88 3.58
939 987 4.877378 ACAATCAATGGCTGTTTGTCAT 57.123 36.364 0.00 0.00 41.94 3.06
940 988 4.562082 ACAATCAATGGCTGTTTGTCATG 58.438 39.130 0.00 0.00 41.94 3.07
941 989 4.281435 ACAATCAATGGCTGTTTGTCATGA 59.719 37.500 0.00 0.00 41.94 3.07
942 990 5.046878 ACAATCAATGGCTGTTTGTCATGAT 60.047 36.000 0.00 0.00 41.94 2.45
943 991 5.670792 ATCAATGGCTGTTTGTCATGATT 57.329 34.783 0.00 0.00 40.61 2.57
945 993 6.198650 TCAATGGCTGTTTGTCATGATTAG 57.801 37.500 0.00 0.00 40.61 1.73
947 995 6.883756 TCAATGGCTGTTTGTCATGATTAGTA 59.116 34.615 0.00 0.00 40.61 1.82
948 996 7.392953 TCAATGGCTGTTTGTCATGATTAGTAA 59.607 33.333 0.00 0.00 40.61 2.24
949 997 7.701539 ATGGCTGTTTGTCATGATTAGTAAA 57.298 32.000 0.00 0.00 39.89 2.01
950 998 7.701539 TGGCTGTTTGTCATGATTAGTAAAT 57.298 32.000 0.00 0.00 0.00 1.40
971 1027 1.299541 GTGAATCGGATTGGTCGCAT 58.700 50.000 8.18 0.00 0.00 4.73
972 1028 1.261619 GTGAATCGGATTGGTCGCATC 59.738 52.381 8.18 0.00 0.00 3.91
973 1029 0.508641 GAATCGGATTGGTCGCATCG 59.491 55.000 8.18 0.00 0.00 3.84
974 1030 1.498865 AATCGGATTGGTCGCATCGC 61.499 55.000 1.68 0.00 0.00 4.58
975 1031 2.642996 ATCGGATTGGTCGCATCGCA 62.643 55.000 0.00 0.00 0.00 5.10
991 1047 1.342496 TCGCATGCAGGAAGGAGATAG 59.658 52.381 19.57 0.00 0.00 2.08
992 1048 1.342496 CGCATGCAGGAAGGAGATAGA 59.658 52.381 19.57 0.00 0.00 1.98
993 1049 2.028294 CGCATGCAGGAAGGAGATAGAT 60.028 50.000 19.57 0.00 0.00 1.98
994 1050 3.598299 GCATGCAGGAAGGAGATAGATC 58.402 50.000 14.21 0.00 0.00 2.75
1071 1127 2.126424 GTCTGCCTCCACGACGAC 60.126 66.667 0.00 0.00 0.00 4.34
1109 1169 4.342862 TCCAGGTGAAGAAGAAGAACAG 57.657 45.455 0.00 0.00 0.00 3.16
1118 1182 8.454894 GGTGAAGAAGAAGAACAGGATTAATTC 58.545 37.037 0.00 0.00 0.00 2.17
1132 1196 9.466497 ACAGGATTAATTCATTTGCTTCTCTTA 57.534 29.630 0.00 0.00 0.00 2.10
1200 1266 5.874810 TGGACAGACACAGCTTAATCAATAC 59.125 40.000 0.00 0.00 0.00 1.89
1201 1267 5.294552 GGACAGACACAGCTTAATCAATACC 59.705 44.000 0.00 0.00 0.00 2.73
1221 1316 1.047801 AAATGTTGGACTGGTTGGGC 58.952 50.000 0.00 0.00 0.00 5.36
1244 1339 7.661847 GGGCTGTCATGCTAAAATTACTAGTAT 59.338 37.037 2.79 0.00 0.00 2.12
1276 1386 9.220767 ACTCACTTTAAATAGGTTCATCAACTC 57.779 33.333 0.00 0.00 32.50 3.01
1277 1387 9.442047 CTCACTTTAAATAGGTTCATCAACTCT 57.558 33.333 0.00 0.00 32.50 3.24
1278 1388 9.219603 TCACTTTAAATAGGTTCATCAACTCTG 57.780 33.333 0.00 0.00 32.50 3.35
1300 1410 2.409948 GGAGAGGTCCAACAATCTGG 57.590 55.000 0.00 0.00 43.31 3.86
1301 1411 1.909302 GGAGAGGTCCAACAATCTGGA 59.091 52.381 0.00 0.00 43.31 3.86
1326 1436 3.119792 CGAAACGTTTCTGTAGCTGAGTC 59.880 47.826 31.88 8.33 35.07 3.36
1347 1457 6.936279 AGTCTAGCTAGCATTTGTGTTTCTA 58.064 36.000 18.83 0.00 0.00 2.10
1348 1458 7.560368 AGTCTAGCTAGCATTTGTGTTTCTAT 58.440 34.615 18.83 0.00 0.00 1.98
1349 1459 7.493971 AGTCTAGCTAGCATTTGTGTTTCTATG 59.506 37.037 18.83 0.00 0.00 2.23
1350 1460 7.492669 GTCTAGCTAGCATTTGTGTTTCTATGA 59.507 37.037 18.83 0.00 0.00 2.15
1351 1461 8.040727 TCTAGCTAGCATTTGTGTTTCTATGAA 58.959 33.333 18.83 0.00 0.00 2.57
1352 1462 7.081526 AGCTAGCATTTGTGTTTCTATGAAG 57.918 36.000 18.83 0.00 0.00 3.02
1353 1463 6.094603 AGCTAGCATTTGTGTTTCTATGAAGG 59.905 38.462 18.83 0.00 0.00 3.46
1354 1464 6.127897 GCTAGCATTTGTGTTTCTATGAAGGT 60.128 38.462 10.63 0.00 0.00 3.50
1355 1465 6.017400 AGCATTTGTGTTTCTATGAAGGTG 57.983 37.500 0.00 0.00 0.00 4.00
1356 1466 4.622740 GCATTTGTGTTTCTATGAAGGTGC 59.377 41.667 0.00 0.00 0.00 5.01
1357 1467 5.771469 CATTTGTGTTTCTATGAAGGTGCA 58.229 37.500 0.00 0.00 0.00 4.57
1358 1468 6.392354 CATTTGTGTTTCTATGAAGGTGCAT 58.608 36.000 0.00 0.00 0.00 3.96
1364 1474 7.710907 TGTGTTTCTATGAAGGTGCATATACTC 59.289 37.037 0.00 0.00 30.90 2.59
1378 1488 7.169982 GGTGCATATACTCACATAGTGAAGTTC 59.830 40.741 1.19 0.00 42.26 3.01
1397 1507 8.475639 TGAAGTTCCAGTTAACCATAGATACTC 58.524 37.037 0.88 0.00 0.00 2.59
1399 1509 8.012957 AGTTCCAGTTAACCATAGATACTCTG 57.987 38.462 0.88 0.00 0.00 3.35
1435 2699 6.261158 GCAGACCTCGATATGCTATGATAGTA 59.739 42.308 0.92 0.00 35.78 1.82
1475 2745 7.572523 TGTGCTTGGAGGATAAATTCTAATG 57.427 36.000 0.00 0.00 0.00 1.90
1495 3039 0.803740 CTCTGCTCTTTTGGCTGCTC 59.196 55.000 0.00 0.00 0.00 4.26
1726 3270 1.661341 AGATCGTGCAGGAGAATTGC 58.339 50.000 15.18 0.56 41.86 3.56
1748 3300 8.668510 TTGCTAGGCAAATAAATGAAACAAAA 57.331 26.923 2.28 0.00 45.96 2.44
1749 3301 8.668510 TGCTAGGCAAATAAATGAAACAAAAA 57.331 26.923 0.00 0.00 34.76 1.94
1769 3321 9.868277 ACAAAAAGATAAGATTCAACACAAACA 57.132 25.926 0.00 0.00 0.00 2.83
1794 3346 0.833287 GTGCTCCCAGGAGAATGCTA 59.167 55.000 18.08 0.00 44.53 3.49
1795 3347 1.419387 GTGCTCCCAGGAGAATGCTAT 59.581 52.381 18.08 0.00 44.53 2.97
1796 3348 1.419012 TGCTCCCAGGAGAATGCTATG 59.581 52.381 18.08 0.00 44.53 2.23
1797 3349 1.881498 GCTCCCAGGAGAATGCTATGC 60.881 57.143 18.08 0.00 44.53 3.14
1798 3350 1.698532 CTCCCAGGAGAATGCTATGCT 59.301 52.381 8.05 0.00 44.53 3.79
1826 3378 4.535526 TCTTTGTACATAGCAGCAGTCA 57.464 40.909 8.33 0.00 0.00 3.41
1840 3392 4.439289 GCAGCAGTCAGTTTTCTTCTTGTT 60.439 41.667 0.00 0.00 0.00 2.83
1841 3393 5.644644 CAGCAGTCAGTTTTCTTCTTGTTT 58.355 37.500 0.00 0.00 0.00 2.83
1842 3394 5.741040 CAGCAGTCAGTTTTCTTCTTGTTTC 59.259 40.000 0.00 0.00 0.00 2.78
1890 3443 4.630940 GGTGTTATTTCCATGCCATTTGTG 59.369 41.667 0.00 0.00 0.00 3.33
1895 3448 7.333921 TGTTATTTCCATGCCATTTGTGATTTC 59.666 33.333 0.00 0.00 0.00 2.17
1902 3455 6.091713 CCATGCCATTTGTGATTTCTTCTTTC 59.908 38.462 0.00 0.00 0.00 2.62
1919 3474 8.647143 TCTTCTTTCAAATGGTTTGTGATTTC 57.353 30.769 2.74 0.00 41.36 2.17
1938 3493 0.109342 CTTGTGTGGGGAGACAAGCT 59.891 55.000 0.00 0.00 41.84 3.74
1939 3494 0.550914 TTGTGTGGGGAGACAAGCTT 59.449 50.000 0.00 0.00 0.00 3.74
1940 3495 0.179020 TGTGTGGGGAGACAAGCTTG 60.179 55.000 24.84 24.84 0.00 4.01
2037 3597 5.573337 ATTTCCTTGCTCAGATTAGTTGC 57.427 39.130 0.00 0.00 0.00 4.17
2084 3647 2.388121 GCTCATGACAAGCAACACAAC 58.612 47.619 0.00 0.00 39.61 3.32
2085 3648 2.223548 GCTCATGACAAGCAACACAACA 60.224 45.455 0.00 0.00 39.61 3.33
2086 3649 3.365832 CTCATGACAAGCAACACAACAC 58.634 45.455 0.00 0.00 0.00 3.32
2087 3650 2.751806 TCATGACAAGCAACACAACACA 59.248 40.909 0.00 0.00 0.00 3.72
2091 3654 3.243535 TGACAAGCAACACAACACAACAA 60.244 39.130 0.00 0.00 0.00 2.83
2160 3729 5.236282 ACTATCAGGCATTCATCATTCTCG 58.764 41.667 0.00 0.00 0.00 4.04
2186 3755 7.547370 GGCATATCAATTCAGGTACATCTCTAC 59.453 40.741 0.00 0.00 0.00 2.59
2200 3773 8.349983 GGTACATCTCTACTTCAATTCTCTCTC 58.650 40.741 0.00 0.00 0.00 3.20
2205 3778 9.866655 ATCTCTACTTCAATTCTCTCTCTGTAT 57.133 33.333 0.00 0.00 0.00 2.29
2221 3794 9.273137 TCTCTCTGTATAGGGAAGAAGAAAAAT 57.727 33.333 0.00 0.00 31.66 1.82
2353 3927 1.604604 TACAGCAAACCAGTCAAGGC 58.395 50.000 0.00 0.00 0.00 4.35
2357 3931 1.458639 GCAAACCAGTCAAGGCAGCT 61.459 55.000 0.00 0.00 0.00 4.24
2404 3978 3.141398 GGACAAGAACAGCAGACAATGA 58.859 45.455 0.00 0.00 0.00 2.57
2423 3997 2.158370 TGATAACCTCTCTATCCCCGCA 60.158 50.000 0.00 0.00 0.00 5.69
2430 4004 1.043816 CTCTATCCCCGCACATGAGT 58.956 55.000 0.00 0.00 0.00 3.41
2437 4011 1.300971 CCCGCACATGAGTTCCTGTG 61.301 60.000 11.65 11.65 44.40 3.66
2442 4016 2.362736 CACATGAGTTCCTGTGATGGG 58.637 52.381 10.79 0.00 44.35 4.00
2460 4034 1.070786 GACCAAACCACGCAGGAGA 59.929 57.895 0.93 0.00 41.22 3.71
2475 4049 3.257393 CAGGAGATGTCACAAGTACAGC 58.743 50.000 0.00 0.00 33.49 4.40
2685 4489 1.532078 TCTGGCCCACGAGTACACA 60.532 57.895 0.00 0.00 0.00 3.72
2703 4507 3.771160 GCCTCCATCACGTCGGGT 61.771 66.667 0.00 0.00 0.00 5.28
2721 4525 1.067071 GGTCGGAAGGAGTTCACGAAT 60.067 52.381 0.00 0.00 37.22 3.34
2722 4526 1.993370 GTCGGAAGGAGTTCACGAATG 59.007 52.381 0.00 0.00 37.22 2.67
2723 4527 1.890489 TCGGAAGGAGTTCACGAATGA 59.110 47.619 0.00 0.00 34.49 2.57
2724 4528 1.993370 CGGAAGGAGTTCACGAATGAC 59.007 52.381 0.00 0.00 33.38 3.06
2725 4529 2.352814 CGGAAGGAGTTCACGAATGACT 60.353 50.000 0.00 0.00 33.38 3.41
2726 4530 3.254892 GGAAGGAGTTCACGAATGACTC 58.745 50.000 0.00 0.00 33.38 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.439721 ACTAAGTAAAAAGTTCACCCGGTT 58.560 37.500 0.00 0.00 0.00 4.44
1 2 5.039920 ACTAAGTAAAAAGTTCACCCGGT 57.960 39.130 0.00 0.00 0.00 5.28
2 3 7.495135 TTTACTAAGTAAAAAGTTCACCCGG 57.505 36.000 0.00 0.00 35.45 5.73
27 28 9.391006 ACCGTGTGAACATCATATTAAACTATT 57.609 29.630 0.00 0.00 0.00 1.73
28 29 8.826710 CACCGTGTGAACATCATATTAAACTAT 58.173 33.333 0.00 0.00 35.23 2.12
29 30 7.201574 GCACCGTGTGAACATCATATTAAACTA 60.202 37.037 8.04 0.00 35.23 2.24
30 31 6.403200 GCACCGTGTGAACATCATATTAAACT 60.403 38.462 8.04 0.00 35.23 2.66
31 32 5.737290 GCACCGTGTGAACATCATATTAAAC 59.263 40.000 8.04 0.00 35.23 2.01
32 33 5.446607 CGCACCGTGTGAACATCATATTAAA 60.447 40.000 6.18 0.00 35.23 1.52
33 34 4.033472 CGCACCGTGTGAACATCATATTAA 59.967 41.667 6.18 0.00 35.23 1.40
34 35 3.553917 CGCACCGTGTGAACATCATATTA 59.446 43.478 6.18 0.00 35.23 0.98
35 36 2.351418 CGCACCGTGTGAACATCATATT 59.649 45.455 6.18 0.00 35.23 1.28
36 37 1.933181 CGCACCGTGTGAACATCATAT 59.067 47.619 6.18 0.00 35.23 1.78
37 38 1.067495 TCGCACCGTGTGAACATCATA 60.067 47.619 12.38 0.00 33.43 2.15
38 39 0.320334 TCGCACCGTGTGAACATCAT 60.320 50.000 12.38 0.00 33.43 2.45
39 40 1.068250 TCGCACCGTGTGAACATCA 59.932 52.632 12.38 0.00 33.43 3.07
40 41 1.491563 GTCGCACCGTGTGAACATC 59.508 57.895 16.19 0.76 38.76 3.06
41 42 1.959226 GGTCGCACCGTGTGAACAT 60.959 57.895 22.47 0.00 43.64 2.71
42 43 2.586635 GGTCGCACCGTGTGAACA 60.587 61.111 22.47 0.00 43.64 3.18
43 44 1.503818 AATGGTCGCACCGTGTGAAC 61.504 55.000 20.98 20.98 44.39 3.18
44 45 0.816018 AAATGGTCGCACCGTGTGAA 60.816 50.000 16.19 2.69 42.58 3.18
45 46 0.816018 AAAATGGTCGCACCGTGTGA 60.816 50.000 10.77 10.77 42.58 3.58
46 47 0.660005 CAAAATGGTCGCACCGTGTG 60.660 55.000 5.68 5.68 42.58 3.82
47 48 1.098712 ACAAAATGGTCGCACCGTGT 61.099 50.000 0.00 0.00 42.58 4.49
48 49 0.030101 AACAAAATGGTCGCACCGTG 59.970 50.000 0.00 0.00 42.58 4.94
49 50 0.030101 CAACAAAATGGTCGCACCGT 59.970 50.000 1.66 0.00 42.58 4.83
50 51 0.030101 ACAACAAAATGGTCGCACCG 59.970 50.000 1.66 0.00 42.58 4.94
51 52 1.857837 CAACAACAAAATGGTCGCACC 59.142 47.619 0.00 0.00 39.22 5.01
52 53 2.803451 TCAACAACAAAATGGTCGCAC 58.197 42.857 0.00 0.00 0.00 5.34
53 54 3.510388 TTCAACAACAAAATGGTCGCA 57.490 38.095 0.00 0.00 0.00 5.10
54 55 4.564769 TCTTTTCAACAACAAAATGGTCGC 59.435 37.500 0.00 0.00 0.00 5.19
55 56 6.475076 TCATCTTTTCAACAACAAAATGGTCG 59.525 34.615 0.00 0.00 0.00 4.79
56 57 7.769272 TCATCTTTTCAACAACAAAATGGTC 57.231 32.000 0.00 0.00 0.00 4.02
57 58 7.605691 TGTTCATCTTTTCAACAACAAAATGGT 59.394 29.630 0.00 0.00 0.00 3.55
58 59 7.972527 TGTTCATCTTTTCAACAACAAAATGG 58.027 30.769 0.00 0.00 0.00 3.16
59 60 9.823098 TTTGTTCATCTTTTCAACAACAAAATG 57.177 25.926 5.52 0.00 39.53 2.32
74 75 9.933723 CTCCTTTTCCATAAATTTGTTCATCTT 57.066 29.630 0.00 0.00 0.00 2.40
75 76 9.093458 ACTCCTTTTCCATAAATTTGTTCATCT 57.907 29.630 0.00 0.00 0.00 2.90
76 77 9.143631 CACTCCTTTTCCATAAATTTGTTCATC 57.856 33.333 0.00 0.00 0.00 2.92
77 78 8.869109 TCACTCCTTTTCCATAAATTTGTTCAT 58.131 29.630 0.00 0.00 0.00 2.57
78 79 8.243961 TCACTCCTTTTCCATAAATTTGTTCA 57.756 30.769 0.00 0.00 0.00 3.18
79 80 9.710900 AATCACTCCTTTTCCATAAATTTGTTC 57.289 29.630 0.00 0.00 0.00 3.18
83 84 9.002600 GCAAAATCACTCCTTTTCCATAAATTT 57.997 29.630 0.00 0.00 0.00 1.82
84 85 8.156165 TGCAAAATCACTCCTTTTCCATAAATT 58.844 29.630 0.00 0.00 0.00 1.82
85 86 7.678837 TGCAAAATCACTCCTTTTCCATAAAT 58.321 30.769 0.00 0.00 0.00 1.40
86 87 7.060383 TGCAAAATCACTCCTTTTCCATAAA 57.940 32.000 0.00 0.00 0.00 1.40
87 88 6.662865 TGCAAAATCACTCCTTTTCCATAA 57.337 33.333 0.00 0.00 0.00 1.90
88 89 6.855763 ATGCAAAATCACTCCTTTTCCATA 57.144 33.333 0.00 0.00 25.48 2.74
89 90 5.750352 ATGCAAAATCACTCCTTTTCCAT 57.250 34.783 0.00 0.00 0.00 3.41
90 91 6.855763 ATATGCAAAATCACTCCTTTTCCA 57.144 33.333 0.00 0.00 0.00 3.53
91 92 7.064966 CCAAATATGCAAAATCACTCCTTTTCC 59.935 37.037 0.00 0.00 0.00 3.13
92 93 7.064966 CCCAAATATGCAAAATCACTCCTTTTC 59.935 37.037 0.00 0.00 0.00 2.29
93 94 6.880529 CCCAAATATGCAAAATCACTCCTTTT 59.119 34.615 0.00 0.00 0.00 2.27
94 95 6.408869 CCCAAATATGCAAAATCACTCCTTT 58.591 36.000 0.00 0.00 0.00 3.11
95 96 5.627503 GCCCAAATATGCAAAATCACTCCTT 60.628 40.000 0.00 0.00 0.00 3.36
96 97 4.141869 GCCCAAATATGCAAAATCACTCCT 60.142 41.667 0.00 0.00 0.00 3.69
97 98 4.122046 GCCCAAATATGCAAAATCACTCC 58.878 43.478 0.00 0.00 0.00 3.85
98 99 4.807304 CAGCCCAAATATGCAAAATCACTC 59.193 41.667 0.00 0.00 0.00 3.51
99 100 4.383335 CCAGCCCAAATATGCAAAATCACT 60.383 41.667 0.00 0.00 0.00 3.41
100 101 3.872771 CCAGCCCAAATATGCAAAATCAC 59.127 43.478 0.00 0.00 0.00 3.06
101 102 3.118334 CCCAGCCCAAATATGCAAAATCA 60.118 43.478 0.00 0.00 0.00 2.57
102 103 3.469739 CCCAGCCCAAATATGCAAAATC 58.530 45.455 0.00 0.00 0.00 2.17
103 104 2.421811 GCCCAGCCCAAATATGCAAAAT 60.422 45.455 0.00 0.00 0.00 1.82
104 105 1.065564 GCCCAGCCCAAATATGCAAAA 60.066 47.619 0.00 0.00 0.00 2.44
105 106 0.540923 GCCCAGCCCAAATATGCAAA 59.459 50.000 0.00 0.00 0.00 3.68
106 107 1.336632 GGCCCAGCCCAAATATGCAA 61.337 55.000 0.00 0.00 44.06 4.08
107 108 1.761667 GGCCCAGCCCAAATATGCA 60.762 57.895 0.00 0.00 44.06 3.96
108 109 3.141449 GGCCCAGCCCAAATATGC 58.859 61.111 0.00 0.00 44.06 3.14
123 124 1.269413 CGATTCATTGGGCATTCTGGC 60.269 52.381 0.00 0.00 42.88 4.85
124 125 2.300433 TCGATTCATTGGGCATTCTGG 58.700 47.619 0.00 0.00 0.00 3.86
125 126 3.305131 CCATCGATTCATTGGGCATTCTG 60.305 47.826 0.00 0.00 0.00 3.02
126 127 2.889045 CCATCGATTCATTGGGCATTCT 59.111 45.455 0.00 0.00 0.00 2.40
127 128 2.886523 TCCATCGATTCATTGGGCATTC 59.113 45.455 0.00 0.00 0.00 2.67
128 129 2.948115 TCCATCGATTCATTGGGCATT 58.052 42.857 0.00 0.00 0.00 3.56
129 130 2.662535 TCCATCGATTCATTGGGCAT 57.337 45.000 0.00 0.00 0.00 4.40
130 131 2.232399 CATCCATCGATTCATTGGGCA 58.768 47.619 0.00 0.00 0.00 5.36
131 132 1.068055 GCATCCATCGATTCATTGGGC 60.068 52.381 0.00 0.00 0.00 5.36
132 133 1.198408 CGCATCCATCGATTCATTGGG 59.802 52.381 0.00 0.00 0.00 4.12
133 134 1.400629 GCGCATCCATCGATTCATTGG 60.401 52.381 0.30 0.00 0.00 3.16
134 135 1.264826 TGCGCATCCATCGATTCATTG 59.735 47.619 5.66 0.00 0.00 2.82
135 136 1.265095 GTGCGCATCCATCGATTCATT 59.735 47.619 15.91 0.00 0.00 2.57
136 137 0.870393 GTGCGCATCCATCGATTCAT 59.130 50.000 15.91 0.00 0.00 2.57
137 138 0.461693 TGTGCGCATCCATCGATTCA 60.462 50.000 15.91 0.00 0.00 2.57
138 139 0.234106 CTGTGCGCATCCATCGATTC 59.766 55.000 15.91 0.00 0.00 2.52
139 140 0.462581 ACTGTGCGCATCCATCGATT 60.463 50.000 15.91 0.00 0.00 3.34
140 141 1.144716 ACTGTGCGCATCCATCGAT 59.855 52.632 15.91 0.00 0.00 3.59
141 142 1.810853 CACTGTGCGCATCCATCGA 60.811 57.895 15.91 0.00 0.00 3.59
142 143 2.705220 CACTGTGCGCATCCATCG 59.295 61.111 15.91 0.00 0.00 3.84
143 144 2.406401 GCACTGTGCGCATCCATC 59.594 61.111 15.91 0.00 31.71 3.51
152 153 1.741032 GAGGCTGAGAGCACTGTGC 60.741 63.158 24.59 24.59 44.75 4.57
153 154 1.079266 GGAGGCTGAGAGCACTGTG 60.079 63.158 2.76 2.76 44.75 3.66
154 155 2.289532 GGGAGGCTGAGAGCACTGT 61.290 63.158 0.00 0.00 44.75 3.55
155 156 2.288778 TGGGAGGCTGAGAGCACTG 61.289 63.158 0.00 0.00 44.75 3.66
156 157 2.121385 TGGGAGGCTGAGAGCACT 59.879 61.111 0.00 0.00 44.75 4.40
157 158 2.267324 GTGGGAGGCTGAGAGCAC 59.733 66.667 0.00 0.00 44.75 4.40
158 159 3.385384 CGTGGGAGGCTGAGAGCA 61.385 66.667 0.00 0.00 44.75 4.26
159 160 3.363844 GACGTGGGAGGCTGAGAGC 62.364 68.421 0.00 0.00 41.46 4.09
160 161 2.888863 GACGTGGGAGGCTGAGAG 59.111 66.667 0.00 0.00 0.00 3.20
161 162 3.062466 CGACGTGGGAGGCTGAGA 61.062 66.667 0.00 0.00 0.00 3.27
162 163 3.343788 GACGACGTGGGAGGCTGAG 62.344 68.421 4.58 0.00 0.00 3.35
163 164 3.371063 GACGACGTGGGAGGCTGA 61.371 66.667 4.58 0.00 0.00 4.26
164 165 4.778415 CGACGACGTGGGAGGCTG 62.778 72.222 4.58 0.00 34.56 4.85
178 179 7.608308 TTTCCTACTACTAGAAGAAGACGAC 57.392 40.000 0.00 0.00 0.00 4.34
227 228 1.372501 TTTGGGGGAAAGGAGGAGAG 58.627 55.000 0.00 0.00 0.00 3.20
231 232 0.623723 TCGATTTGGGGGAAAGGAGG 59.376 55.000 0.00 0.00 0.00 4.30
271 272 1.740025 CGCCATGGAAGGAGTTTCTTC 59.260 52.381 18.40 0.00 41.64 2.87
272 273 1.351017 TCGCCATGGAAGGAGTTTCTT 59.649 47.619 18.40 0.00 36.03 2.52
273 274 0.984230 TCGCCATGGAAGGAGTTTCT 59.016 50.000 18.40 0.00 36.03 2.52
274 275 2.044123 ATCGCCATGGAAGGAGTTTC 57.956 50.000 18.40 0.00 34.93 2.78
275 276 2.493278 CAAATCGCCATGGAAGGAGTTT 59.507 45.455 18.40 8.05 0.00 2.66
276 277 2.094675 CAAATCGCCATGGAAGGAGTT 58.905 47.619 18.40 11.60 0.00 3.01
277 278 1.683011 CCAAATCGCCATGGAAGGAGT 60.683 52.381 18.40 5.42 39.12 3.85
278 279 1.027357 CCAAATCGCCATGGAAGGAG 58.973 55.000 18.40 0.30 39.12 3.69
279 280 0.331278 ACCAAATCGCCATGGAAGGA 59.669 50.000 18.40 9.60 39.12 3.36
280 281 1.134946 GAACCAAATCGCCATGGAAGG 59.865 52.381 18.40 9.33 39.12 3.46
281 282 2.094675 AGAACCAAATCGCCATGGAAG 58.905 47.619 18.40 8.79 39.12 3.46
282 283 2.214376 AGAACCAAATCGCCATGGAA 57.786 45.000 18.40 2.13 39.12 3.53
305 306 2.711547 AGGGGAATAATCGGGAAGGAAG 59.288 50.000 0.00 0.00 0.00 3.46
306 307 2.784178 AGGGGAATAATCGGGAAGGAA 58.216 47.619 0.00 0.00 0.00 3.36
307 308 2.507478 AGGGGAATAATCGGGAAGGA 57.493 50.000 0.00 0.00 0.00 3.36
310 321 2.784178 AGGAAGGGGAATAATCGGGAA 58.216 47.619 0.00 0.00 0.00 3.97
379 390 1.356624 GGAATTGGATGCGCGGAAG 59.643 57.895 3.18 0.00 0.00 3.46
380 391 0.962855 TTGGAATTGGATGCGCGGAA 60.963 50.000 3.18 0.00 0.00 4.30
381 392 0.751277 ATTGGAATTGGATGCGCGGA 60.751 50.000 8.83 5.00 0.00 5.54
382 393 0.318107 GATTGGAATTGGATGCGCGG 60.318 55.000 8.83 0.00 0.00 6.46
383 394 0.664761 AGATTGGAATTGGATGCGCG 59.335 50.000 0.00 0.00 0.00 6.86
384 395 1.866880 GCAGATTGGAATTGGATGCGC 60.867 52.381 0.00 0.00 0.00 6.09
386 397 2.797087 CGTGCAGATTGGAATTGGATGC 60.797 50.000 0.00 0.00 0.00 3.91
387 398 2.797087 GCGTGCAGATTGGAATTGGATG 60.797 50.000 0.00 0.00 0.00 3.51
388 399 1.406539 GCGTGCAGATTGGAATTGGAT 59.593 47.619 0.00 0.00 0.00 3.41
389 400 0.810648 GCGTGCAGATTGGAATTGGA 59.189 50.000 0.00 0.00 0.00 3.53
391 402 0.527113 TGGCGTGCAGATTGGAATTG 59.473 50.000 0.00 0.00 0.00 2.32
392 403 0.527565 GTGGCGTGCAGATTGGAATT 59.472 50.000 0.00 0.00 0.00 2.17
393 404 1.315257 GGTGGCGTGCAGATTGGAAT 61.315 55.000 0.00 0.00 0.00 3.01
394 405 1.971167 GGTGGCGTGCAGATTGGAA 60.971 57.895 0.00 0.00 0.00 3.53
424 439 4.785453 CTCCTCCTTGGGCACGGC 62.785 72.222 0.00 0.00 36.20 5.68
425 440 4.101448 CCTCCTCCTTGGGCACGG 62.101 72.222 0.00 0.00 36.20 4.94
426 441 3.003173 TCCTCCTCCTTGGGCACG 61.003 66.667 0.00 0.00 36.20 5.34
430 445 1.690985 GGTCCTCCTCCTCCTTGGG 60.691 68.421 0.00 0.00 36.20 4.12
437 452 1.394151 CTCCTTGGGTCCTCCTCCT 59.606 63.158 0.00 0.00 36.20 3.69
438 453 2.371259 GCTCCTTGGGTCCTCCTCC 61.371 68.421 0.00 0.00 36.20 4.30
439 454 1.201429 TTGCTCCTTGGGTCCTCCTC 61.201 60.000 0.00 0.00 36.20 3.71
440 455 1.151810 TTGCTCCTTGGGTCCTCCT 60.152 57.895 0.00 0.00 36.20 3.69
447 462 0.895559 GGTGGTTCTTGCTCCTTGGG 60.896 60.000 0.00 0.00 0.00 4.12
449 464 1.237285 CCGGTGGTTCTTGCTCCTTG 61.237 60.000 0.00 0.00 0.00 3.61
451 466 2.750350 CCGGTGGTTCTTGCTCCT 59.250 61.111 0.00 0.00 0.00 3.69
452 467 2.359975 CCCGGTGGTTCTTGCTCC 60.360 66.667 0.00 0.00 0.00 4.70
453 468 2.359975 CCCCGGTGGTTCTTGCTC 60.360 66.667 0.00 0.00 0.00 4.26
454 469 4.660938 GCCCCGGTGGTTCTTGCT 62.661 66.667 0.00 0.00 36.04 3.91
455 470 4.660938 AGCCCCGGTGGTTCTTGC 62.661 66.667 0.00 0.00 36.04 4.01
456 471 2.359975 GAGCCCCGGTGGTTCTTG 60.360 66.667 15.46 0.00 40.97 3.02
457 472 3.647771 GGAGCCCCGGTGGTTCTT 61.648 66.667 19.89 2.75 43.53 2.52
458 473 4.658786 AGGAGCCCCGGTGGTTCT 62.659 66.667 19.89 8.31 43.53 3.01
459 474 4.410400 CAGGAGCCCCGGTGGTTC 62.410 72.222 14.71 14.71 43.31 3.62
472 487 4.649705 TTGCTCCCCGGACCAGGA 62.650 66.667 0.73 0.00 0.00 3.86
474 489 4.410400 GGTTGCTCCCCGGACCAG 62.410 72.222 0.73 0.00 32.41 4.00
476 491 3.920093 CTTGGTTGCTCCCCGGACC 62.920 68.421 0.73 0.77 34.77 4.46
477 492 2.359975 CTTGGTTGCTCCCCGGAC 60.360 66.667 0.73 0.00 34.77 4.79
478 493 3.646715 CCTTGGTTGCTCCCCGGA 61.647 66.667 0.73 0.00 34.77 5.14
479 494 1.921869 ATACCTTGGTTGCTCCCCGG 61.922 60.000 0.00 0.00 34.77 5.73
480 495 0.748005 CATACCTTGGTTGCTCCCCG 60.748 60.000 0.00 0.00 34.77 5.73
481 496 0.331616 ACATACCTTGGTTGCTCCCC 59.668 55.000 0.00 0.00 34.77 4.81
482 497 3.214328 CATACATACCTTGGTTGCTCCC 58.786 50.000 0.00 0.00 34.77 4.30
483 498 2.618709 GCATACATACCTTGGTTGCTCC 59.381 50.000 0.00 0.00 35.57 4.70
484 499 3.545703 AGCATACATACCTTGGTTGCTC 58.454 45.455 9.39 0.00 41.22 4.26
485 500 3.652057 AGCATACATACCTTGGTTGCT 57.348 42.857 9.39 9.39 40.66 3.91
521 536 1.112315 AGCGGCGAATCCTCTGATCT 61.112 55.000 12.98 0.00 0.00 2.75
526 541 0.752009 TCAGTAGCGGCGAATCCTCT 60.752 55.000 12.98 0.00 33.69 3.69
531 546 2.604046 AAGAATCAGTAGCGGCGAAT 57.396 45.000 12.98 0.00 0.00 3.34
535 550 3.243434 TGCTAGTAAGAATCAGTAGCGGC 60.243 47.826 0.00 0.00 44.48 6.53
536 551 4.202020 TGTGCTAGTAAGAATCAGTAGCGG 60.202 45.833 5.09 0.00 44.48 5.52
538 553 4.735822 CGTGTGCTAGTAAGAATCAGTAGC 59.264 45.833 2.87 2.87 42.72 3.58
542 573 3.304559 GTGCGTGTGCTAGTAAGAATCAG 59.695 47.826 0.00 0.00 43.34 2.90
550 581 1.144969 GCTTTGTGCGTGTGCTAGTA 58.855 50.000 0.00 0.00 43.34 1.82
551 582 0.813610 TGCTTTGTGCGTGTGCTAGT 60.814 50.000 0.00 0.00 46.63 2.57
556 587 1.255859 CATGTTTGCTTTGTGCGTGTG 59.744 47.619 0.00 0.00 46.63 3.82
557 588 1.135141 ACATGTTTGCTTTGTGCGTGT 60.135 42.857 0.00 0.00 46.63 4.49
558 589 1.518102 GACATGTTTGCTTTGTGCGTG 59.482 47.619 0.00 0.00 46.63 5.34
559 590 1.535860 GGACATGTTTGCTTTGTGCGT 60.536 47.619 0.00 0.00 46.63 5.24
560 591 1.130955 GGACATGTTTGCTTTGTGCG 58.869 50.000 0.00 0.00 46.63 5.34
564 595 6.312426 TGTTTTTACTGGACATGTTTGCTTTG 59.688 34.615 0.00 0.00 0.00 2.77
568 599 5.105752 TGTGTTTTTACTGGACATGTTTGC 58.894 37.500 0.00 0.00 0.00 3.68
578 609 2.664424 CGGCGACATGTGTTTTTACTGG 60.664 50.000 1.15 0.00 0.00 4.00
582 613 1.231221 AGCGGCGACATGTGTTTTTA 58.769 45.000 12.98 0.00 0.00 1.52
586 617 1.014044 CAGTAGCGGCGACATGTGTT 61.014 55.000 12.98 0.00 0.00 3.32
588 619 0.528466 ATCAGTAGCGGCGACATGTG 60.528 55.000 12.98 5.44 0.00 3.21
590 621 0.855349 GAATCAGTAGCGGCGACATG 59.145 55.000 12.98 10.31 0.00 3.21
592 623 0.530744 AAGAATCAGTAGCGGCGACA 59.469 50.000 12.98 0.00 0.00 4.35
593 624 0.924090 CAAGAATCAGTAGCGGCGAC 59.076 55.000 12.98 4.99 0.00 5.19
594 625 0.530744 ACAAGAATCAGTAGCGGCGA 59.469 50.000 12.98 0.00 0.00 5.54
595 626 0.924090 GACAAGAATCAGTAGCGGCG 59.076 55.000 0.51 0.51 0.00 6.46
596 627 2.197577 GAGACAAGAATCAGTAGCGGC 58.802 52.381 0.00 0.00 0.00 6.53
599 630 3.157932 AGCGAGACAAGAATCAGTAGC 57.842 47.619 0.00 0.00 0.00 3.58
600 631 5.743026 TCTAGCGAGACAAGAATCAGTAG 57.257 43.478 0.00 0.00 0.00 2.57
601 632 7.255173 GGTTATCTAGCGAGACAAGAATCAGTA 60.255 40.741 0.00 0.00 33.41 2.74
603 634 5.918011 GGTTATCTAGCGAGACAAGAATCAG 59.082 44.000 0.00 0.00 33.41 2.90
604 635 5.359860 TGGTTATCTAGCGAGACAAGAATCA 59.640 40.000 0.00 0.00 33.41 2.57
605 636 5.833082 TGGTTATCTAGCGAGACAAGAATC 58.167 41.667 0.00 0.00 33.41 2.52
606 637 5.854010 TGGTTATCTAGCGAGACAAGAAT 57.146 39.130 0.00 0.00 33.41 2.40
607 638 5.408356 GTTGGTTATCTAGCGAGACAAGAA 58.592 41.667 0.00 0.00 33.41 2.52
608 639 4.142227 GGTTGGTTATCTAGCGAGACAAGA 60.142 45.833 0.00 0.00 33.41 3.02
609 640 4.113354 GGTTGGTTATCTAGCGAGACAAG 58.887 47.826 0.00 0.00 33.41 3.16
611 642 2.098607 CGGTTGGTTATCTAGCGAGACA 59.901 50.000 0.00 0.00 33.41 3.41
612 643 2.357009 TCGGTTGGTTATCTAGCGAGAC 59.643 50.000 0.00 0.00 36.95 3.36
614 645 2.543238 GGTCGGTTGGTTATCTAGCGAG 60.543 54.545 1.15 0.00 41.66 5.03
616 647 1.537562 GGGTCGGTTGGTTATCTAGCG 60.538 57.143 0.00 0.00 0.00 4.26
618 649 2.364647 GAGGGGTCGGTTGGTTATCTAG 59.635 54.545 0.00 0.00 0.00 2.43
620 651 1.201424 GAGGGGTCGGTTGGTTATCT 58.799 55.000 0.00 0.00 0.00 1.98
621 652 0.906775 TGAGGGGTCGGTTGGTTATC 59.093 55.000 0.00 0.00 0.00 1.75
622 653 0.616891 GTGAGGGGTCGGTTGGTTAT 59.383 55.000 0.00 0.00 0.00 1.89
623 654 1.482748 GGTGAGGGGTCGGTTGGTTA 61.483 60.000 0.00 0.00 0.00 2.85
624 655 2.826003 GGTGAGGGGTCGGTTGGTT 61.826 63.158 0.00 0.00 0.00 3.67
626 657 2.928396 AGGTGAGGGGTCGGTTGG 60.928 66.667 0.00 0.00 0.00 3.77
627 658 2.347490 CAGGTGAGGGGTCGGTTG 59.653 66.667 0.00 0.00 0.00 3.77
628 659 3.637273 GCAGGTGAGGGGTCGGTT 61.637 66.667 0.00 0.00 0.00 4.44
629 660 4.954118 TGCAGGTGAGGGGTCGGT 62.954 66.667 0.00 0.00 0.00 4.69
630 661 4.087892 CTGCAGGTGAGGGGTCGG 62.088 72.222 5.57 0.00 0.00 4.79
634 665 0.607489 CAGAAACTGCAGGTGAGGGG 60.607 60.000 19.93 0.00 0.00 4.79
654 700 5.181811 TGAGGTAAACAAAGTGCAGATGATG 59.818 40.000 0.00 0.00 0.00 3.07
656 702 4.713553 TGAGGTAAACAAAGTGCAGATGA 58.286 39.130 0.00 0.00 0.00 2.92
663 709 5.440685 GTCGTGAATGAGGTAAACAAAGTG 58.559 41.667 0.00 0.00 0.00 3.16
664 710 4.514066 GGTCGTGAATGAGGTAAACAAAGT 59.486 41.667 0.00 0.00 0.00 2.66
665 711 4.513692 TGGTCGTGAATGAGGTAAACAAAG 59.486 41.667 0.00 0.00 0.00 2.77
666 712 4.452825 TGGTCGTGAATGAGGTAAACAAA 58.547 39.130 0.00 0.00 0.00 2.83
668 714 3.755112 TGGTCGTGAATGAGGTAAACA 57.245 42.857 0.00 0.00 0.00 2.83
669 715 3.306166 CGATGGTCGTGAATGAGGTAAAC 59.694 47.826 0.00 0.00 34.72 2.01
672 718 1.407618 CCGATGGTCGTGAATGAGGTA 59.592 52.381 0.00 0.00 38.40 3.08
673 719 0.175760 CCGATGGTCGTGAATGAGGT 59.824 55.000 0.00 0.00 38.40 3.85
674 720 0.530650 CCCGATGGTCGTGAATGAGG 60.531 60.000 0.00 0.00 38.40 3.86
675 721 0.459899 TCCCGATGGTCGTGAATGAG 59.540 55.000 0.00 0.00 38.40 2.90
676 722 0.459899 CTCCCGATGGTCGTGAATGA 59.540 55.000 0.00 0.00 38.40 2.57
677 723 0.530650 CCTCCCGATGGTCGTGAATG 60.531 60.000 0.00 0.00 38.40 2.67
678 724 1.686325 CCCTCCCGATGGTCGTGAAT 61.686 60.000 0.00 0.00 38.40 2.57
679 725 2.355986 CCCTCCCGATGGTCGTGAA 61.356 63.158 0.00 0.00 38.40 3.18
680 726 2.758327 CCCTCCCGATGGTCGTGA 60.758 66.667 0.00 0.00 38.40 4.35
683 729 3.323758 TTTGCCCTCCCGATGGTCG 62.324 63.158 0.00 0.00 40.07 4.79
684 730 1.452108 CTTTGCCCTCCCGATGGTC 60.452 63.158 0.00 0.00 0.00 4.02
685 731 2.677228 CTTTGCCCTCCCGATGGT 59.323 61.111 0.00 0.00 0.00 3.55
686 732 2.830370 GCTTTGCCCTCCCGATGG 60.830 66.667 0.00 0.00 0.00 3.51
689 735 2.300967 ATCTGCTTTGCCCTCCCGA 61.301 57.895 0.00 0.00 0.00 5.14
690 736 2.117156 CATCTGCTTTGCCCTCCCG 61.117 63.158 0.00 0.00 0.00 5.14
691 737 1.034292 GTCATCTGCTTTGCCCTCCC 61.034 60.000 0.00 0.00 0.00 4.30
692 738 0.322816 TGTCATCTGCTTTGCCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
695 741 1.760192 ATCTGTCATCTGCTTTGCCC 58.240 50.000 0.00 0.00 0.00 5.36
697 743 4.634184 ATCAATCTGTCATCTGCTTTGC 57.366 40.909 0.00 0.00 0.00 3.68
698 744 6.922247 AGTATCAATCTGTCATCTGCTTTG 57.078 37.500 0.00 0.00 0.00 2.77
699 745 8.016301 TCTAGTATCAATCTGTCATCTGCTTT 57.984 34.615 0.00 0.00 0.00 3.51
701 747 7.779754 ATCTAGTATCAATCTGTCATCTGCT 57.220 36.000 0.00 0.00 0.00 4.24
702 748 8.739039 AGTATCTAGTATCAATCTGTCATCTGC 58.261 37.037 0.00 0.00 0.00 4.26
707 753 9.727859 GGAGTAGTATCTAGTATCAATCTGTCA 57.272 37.037 0.00 0.00 0.00 3.58
708 754 9.953565 AGGAGTAGTATCTAGTATCAATCTGTC 57.046 37.037 0.00 0.00 0.00 3.51
746 792 8.696374 TCAGGAGATGAGTAAAACTTACCTATG 58.304 37.037 0.00 0.00 32.77 2.23
778 824 7.554118 AGTTGAGTTGGTATTTAGTGATGGATG 59.446 37.037 0.00 0.00 0.00 3.51
779 825 7.554118 CAGTTGAGTTGGTATTTAGTGATGGAT 59.446 37.037 0.00 0.00 0.00 3.41
780 826 6.878923 CAGTTGAGTTGGTATTTAGTGATGGA 59.121 38.462 0.00 0.00 0.00 3.41
781 827 6.094048 CCAGTTGAGTTGGTATTTAGTGATGG 59.906 42.308 0.00 0.00 0.00 3.51
782 828 6.878923 TCCAGTTGAGTTGGTATTTAGTGATG 59.121 38.462 0.00 0.00 37.02 3.07
783 829 7.016153 TCCAGTTGAGTTGGTATTTAGTGAT 57.984 36.000 0.00 0.00 37.02 3.06
784 830 6.428083 TCCAGTTGAGTTGGTATTTAGTGA 57.572 37.500 0.00 0.00 37.02 3.41
785 831 7.390440 TGATTCCAGTTGAGTTGGTATTTAGTG 59.610 37.037 0.00 0.00 37.02 2.74
786 832 7.458397 TGATTCCAGTTGAGTTGGTATTTAGT 58.542 34.615 0.00 0.00 37.02 2.24
787 833 7.921786 TGATTCCAGTTGAGTTGGTATTTAG 57.078 36.000 0.00 0.00 37.02 1.85
788 834 9.967451 TTATGATTCCAGTTGAGTTGGTATTTA 57.033 29.630 0.00 0.00 37.02 1.40
789 835 8.877864 TTATGATTCCAGTTGAGTTGGTATTT 57.122 30.769 0.00 0.00 37.02 1.40
790 836 8.877864 TTTATGATTCCAGTTGAGTTGGTATT 57.122 30.769 0.00 0.00 37.02 1.89
792 838 9.967451 TTATTTATGATTCCAGTTGAGTTGGTA 57.033 29.630 0.00 0.00 37.02 3.25
793 839 8.877864 TTATTTATGATTCCAGTTGAGTTGGT 57.122 30.769 0.00 0.00 37.02 3.67
823 869 9.490379 GTACTACTTTATATGTGCAGGCTATTT 57.510 33.333 0.00 0.00 0.00 1.40
825 871 7.039923 ACGTACTACTTTATATGTGCAGGCTAT 60.040 37.037 0.00 0.00 0.00 2.97
826 872 6.263842 ACGTACTACTTTATATGTGCAGGCTA 59.736 38.462 0.00 0.00 0.00 3.93
827 873 5.068723 ACGTACTACTTTATATGTGCAGGCT 59.931 40.000 0.00 0.00 0.00 4.58
828 874 5.287226 ACGTACTACTTTATATGTGCAGGC 58.713 41.667 0.00 0.00 0.00 4.85
829 875 7.646314 ACTACGTACTACTTTATATGTGCAGG 58.354 38.462 0.00 0.00 0.00 4.85
835 881 9.565213 GCCCAATACTACGTACTACTTTATATG 57.435 37.037 0.00 0.00 0.00 1.78
836 882 9.300681 TGCCCAATACTACGTACTACTTTATAT 57.699 33.333 0.00 0.00 0.00 0.86
837 883 8.690203 TGCCCAATACTACGTACTACTTTATA 57.310 34.615 0.00 0.00 0.00 0.98
838 884 7.286316 ACTGCCCAATACTACGTACTACTTTAT 59.714 37.037 0.00 0.00 0.00 1.40
839 885 6.603201 ACTGCCCAATACTACGTACTACTTTA 59.397 38.462 0.00 0.00 0.00 1.85
840 886 5.420104 ACTGCCCAATACTACGTACTACTTT 59.580 40.000 0.00 0.00 0.00 2.66
842 888 4.530875 ACTGCCCAATACTACGTACTACT 58.469 43.478 0.00 0.00 0.00 2.57
843 889 4.336433 TGACTGCCCAATACTACGTACTAC 59.664 45.833 0.00 0.00 0.00 2.73
844 890 4.525996 TGACTGCCCAATACTACGTACTA 58.474 43.478 0.00 0.00 0.00 1.82
845 891 3.359033 TGACTGCCCAATACTACGTACT 58.641 45.455 0.00 0.00 0.00 2.73
846 892 3.379372 TCTGACTGCCCAATACTACGTAC 59.621 47.826 0.00 0.00 0.00 3.67
847 893 3.623703 TCTGACTGCCCAATACTACGTA 58.376 45.455 0.00 0.00 0.00 3.57
848 894 2.453521 TCTGACTGCCCAATACTACGT 58.546 47.619 0.00 0.00 0.00 3.57
850 896 5.023533 TGAATCTGACTGCCCAATACTAC 57.976 43.478 0.00 0.00 0.00 2.73
851 897 4.962362 TCTGAATCTGACTGCCCAATACTA 59.038 41.667 0.00 0.00 0.00 1.82
855 903 2.842496 TCTCTGAATCTGACTGCCCAAT 59.158 45.455 0.00 0.00 0.00 3.16
868 916 7.039504 ACAACCATTGCAACTTATTCTCTGAAT 60.040 33.333 0.00 0.00 0.00 2.57
869 917 6.265196 ACAACCATTGCAACTTATTCTCTGAA 59.735 34.615 0.00 0.00 0.00 3.02
870 918 5.769662 ACAACCATTGCAACTTATTCTCTGA 59.230 36.000 0.00 0.00 0.00 3.27
871 919 6.017400 ACAACCATTGCAACTTATTCTCTG 57.983 37.500 0.00 0.00 0.00 3.35
872 920 6.449698 CAACAACCATTGCAACTTATTCTCT 58.550 36.000 0.00 0.00 0.00 3.10
873 921 5.634859 CCAACAACCATTGCAACTTATTCTC 59.365 40.000 0.00 0.00 0.00 2.87
874 922 5.304101 TCCAACAACCATTGCAACTTATTCT 59.696 36.000 0.00 0.00 0.00 2.40
875 923 5.537188 TCCAACAACCATTGCAACTTATTC 58.463 37.500 0.00 0.00 0.00 1.75
876 924 5.543507 TCCAACAACCATTGCAACTTATT 57.456 34.783 0.00 0.00 0.00 1.40
877 925 5.743636 ATCCAACAACCATTGCAACTTAT 57.256 34.783 0.00 0.00 0.00 1.73
878 926 5.543507 AATCCAACAACCATTGCAACTTA 57.456 34.783 0.00 0.00 0.00 2.24
879 927 4.420522 AATCCAACAACCATTGCAACTT 57.579 36.364 0.00 0.00 0.00 2.66
880 928 4.420522 AAATCCAACAACCATTGCAACT 57.579 36.364 0.00 0.00 0.00 3.16
881 929 4.318689 CGAAAATCCAACAACCATTGCAAC 60.319 41.667 0.00 0.00 0.00 4.17
882 930 3.806521 CGAAAATCCAACAACCATTGCAA 59.193 39.130 0.00 0.00 0.00 4.08
883 931 3.181471 ACGAAAATCCAACAACCATTGCA 60.181 39.130 0.00 0.00 0.00 4.08
884 932 3.389221 ACGAAAATCCAACAACCATTGC 58.611 40.909 0.00 0.00 0.00 3.56
885 933 4.148000 CGAACGAAAATCCAACAACCATTG 59.852 41.667 0.00 0.00 0.00 2.82
886 934 4.202070 ACGAACGAAAATCCAACAACCATT 60.202 37.500 0.14 0.00 0.00 3.16
887 935 3.316868 ACGAACGAAAATCCAACAACCAT 59.683 39.130 0.14 0.00 0.00 3.55
888 936 2.683867 ACGAACGAAAATCCAACAACCA 59.316 40.909 0.14 0.00 0.00 3.67
889 937 3.343380 ACGAACGAAAATCCAACAACC 57.657 42.857 0.14 0.00 0.00 3.77
890 938 4.794246 TGAAACGAACGAAAATCCAACAAC 59.206 37.500 0.14 0.00 0.00 3.32
891 939 4.982999 TGAAACGAACGAAAATCCAACAA 58.017 34.783 0.14 0.00 0.00 2.83
892 940 4.333095 TCTGAAACGAACGAAAATCCAACA 59.667 37.500 0.14 0.00 0.00 3.33
893 941 4.839796 TCTGAAACGAACGAAAATCCAAC 58.160 39.130 0.14 0.00 0.00 3.77
894 942 5.682943 ATCTGAAACGAACGAAAATCCAA 57.317 34.783 0.14 0.00 0.00 3.53
895 943 6.203145 TGTTATCTGAAACGAACGAAAATCCA 59.797 34.615 0.14 0.00 31.76 3.41
896 944 6.595794 TGTTATCTGAAACGAACGAAAATCC 58.404 36.000 0.14 0.00 31.76 3.01
897 945 8.655378 ATTGTTATCTGAAACGAACGAAAATC 57.345 30.769 0.14 0.00 31.76 2.17
898 946 8.286800 TGATTGTTATCTGAAACGAACGAAAAT 58.713 29.630 0.14 0.00 31.76 1.82
899 947 7.631822 TGATTGTTATCTGAAACGAACGAAAA 58.368 30.769 0.14 0.00 31.76 2.29
900 948 7.179927 TGATTGTTATCTGAAACGAACGAAA 57.820 32.000 0.14 0.00 31.76 3.46
901 949 6.772770 TGATTGTTATCTGAAACGAACGAA 57.227 33.333 0.14 0.00 31.76 3.85
902 950 6.772770 TTGATTGTTATCTGAAACGAACGA 57.227 33.333 0.14 0.00 31.76 3.85
903 951 6.465781 CCATTGATTGTTATCTGAAACGAACG 59.534 38.462 0.00 0.00 31.76 3.95
904 952 6.251376 GCCATTGATTGTTATCTGAAACGAAC 59.749 38.462 0.00 0.00 31.76 3.95
905 953 6.150976 AGCCATTGATTGTTATCTGAAACGAA 59.849 34.615 0.00 0.00 31.76 3.85
906 954 5.647658 AGCCATTGATTGTTATCTGAAACGA 59.352 36.000 0.00 0.00 31.76 3.85
907 955 5.740569 CAGCCATTGATTGTTATCTGAAACG 59.259 40.000 0.00 0.00 31.76 3.60
919 967 4.811908 TCATGACAAACAGCCATTGATTG 58.188 39.130 0.00 0.00 43.14 2.67
922 970 5.711506 ACTAATCATGACAAACAGCCATTGA 59.288 36.000 0.00 0.00 0.00 2.57
923 971 5.957798 ACTAATCATGACAAACAGCCATTG 58.042 37.500 0.00 0.00 0.00 2.82
924 972 7.701539 TTACTAATCATGACAAACAGCCATT 57.298 32.000 0.00 0.00 0.00 3.16
927 975 6.974622 CCATTTACTAATCATGACAAACAGCC 59.025 38.462 0.00 0.00 0.00 4.85
929 977 8.729756 TCACCATTTACTAATCATGACAAACAG 58.270 33.333 0.00 0.00 0.00 3.16
933 981 8.611757 CGATTCACCATTTACTAATCATGACAA 58.388 33.333 0.00 0.00 0.00 3.18
934 982 7.226523 CCGATTCACCATTTACTAATCATGACA 59.773 37.037 0.00 0.00 0.00 3.58
936 984 7.505258 TCCGATTCACCATTTACTAATCATGA 58.495 34.615 0.00 0.00 0.00 3.07
937 985 7.728847 TCCGATTCACCATTTACTAATCATG 57.271 36.000 0.00 0.00 0.00 3.07
938 986 8.786898 CAATCCGATTCACCATTTACTAATCAT 58.213 33.333 0.00 0.00 0.00 2.45
939 987 7.228507 CCAATCCGATTCACCATTTACTAATCA 59.771 37.037 0.00 0.00 0.00 2.57
940 988 7.228706 ACCAATCCGATTCACCATTTACTAATC 59.771 37.037 0.00 0.00 0.00 1.75
941 989 7.060421 ACCAATCCGATTCACCATTTACTAAT 58.940 34.615 0.00 0.00 0.00 1.73
942 990 6.419791 ACCAATCCGATTCACCATTTACTAA 58.580 36.000 0.00 0.00 0.00 2.24
943 991 5.996644 ACCAATCCGATTCACCATTTACTA 58.003 37.500 0.00 0.00 0.00 1.82
945 993 4.260620 CGACCAATCCGATTCACCATTTAC 60.261 45.833 0.00 0.00 0.00 2.01
947 995 2.682856 CGACCAATCCGATTCACCATTT 59.317 45.455 0.00 0.00 0.00 2.32
948 996 2.288666 CGACCAATCCGATTCACCATT 58.711 47.619 0.00 0.00 0.00 3.16
949 997 1.953559 CGACCAATCCGATTCACCAT 58.046 50.000 0.00 0.00 0.00 3.55
950 998 0.742990 GCGACCAATCCGATTCACCA 60.743 55.000 0.00 0.00 0.00 4.17
971 1027 1.342496 CTATCTCCTTCCTGCATGCGA 59.658 52.381 14.09 1.65 0.00 5.10
972 1028 1.342496 TCTATCTCCTTCCTGCATGCG 59.658 52.381 14.09 7.87 0.00 4.73
973 1029 3.598299 GATCTATCTCCTTCCTGCATGC 58.402 50.000 11.82 11.82 0.00 4.06
974 1030 3.509184 TCGATCTATCTCCTTCCTGCATG 59.491 47.826 0.00 0.00 0.00 4.06
975 1031 3.772387 TCGATCTATCTCCTTCCTGCAT 58.228 45.455 0.00 0.00 0.00 3.96
991 1047 2.932614 CCATTTCCGCCATCTATCGATC 59.067 50.000 0.00 0.00 0.00 3.69
992 1048 2.303022 ACCATTTCCGCCATCTATCGAT 59.697 45.455 2.16 2.16 0.00 3.59
993 1049 1.691976 ACCATTTCCGCCATCTATCGA 59.308 47.619 0.00 0.00 0.00 3.59
994 1050 2.069273 GACCATTTCCGCCATCTATCG 58.931 52.381 0.00 0.00 0.00 2.92
1071 1127 1.213678 TGGAAGGCCTTGGAGATGATG 59.786 52.381 26.25 0.00 34.31 3.07
1118 1182 5.180868 AGTCAGCAAGTAAGAGAAGCAAATG 59.819 40.000 0.00 0.00 0.00 2.32
1132 1196 2.230660 GCCCAAAGTAAGTCAGCAAGT 58.769 47.619 0.00 0.00 0.00 3.16
1201 1267 1.270252 GCCCAACCAGTCCAACATTTG 60.270 52.381 0.00 0.00 0.00 2.32
1253 1348 8.454106 CCAGAGTTGATGAACCTATTTAAAGTG 58.546 37.037 0.00 0.00 31.81 3.16
1303 1413 3.050619 CTCAGCTACAGAAACGTTTCGT 58.949 45.455 29.72 28.81 43.97 3.85
1304 1414 3.050619 ACTCAGCTACAGAAACGTTTCG 58.949 45.455 29.72 25.66 41.92 3.46
1305 1415 4.299978 AGACTCAGCTACAGAAACGTTTC 58.700 43.478 29.36 29.36 37.45 2.78
1306 1416 4.323553 AGACTCAGCTACAGAAACGTTT 57.676 40.909 14.57 14.57 0.00 3.60
1326 1436 7.776933 TCATAGAAACACAAATGCTAGCTAG 57.223 36.000 16.84 16.84 0.00 3.42
1347 1457 7.015584 TCACTATGTGAGTATATGCACCTTCAT 59.984 37.037 0.00 0.00 37.67 2.57
1348 1458 6.323739 TCACTATGTGAGTATATGCACCTTCA 59.676 38.462 0.00 0.00 37.67 3.02
1349 1459 6.749139 TCACTATGTGAGTATATGCACCTTC 58.251 40.000 0.00 0.00 37.67 3.46
1350 1460 6.731292 TCACTATGTGAGTATATGCACCTT 57.269 37.500 0.00 0.00 37.67 3.50
1351 1461 6.325028 ACTTCACTATGTGAGTATATGCACCT 59.675 38.462 0.00 0.00 43.69 4.00
1352 1462 6.516718 ACTTCACTATGTGAGTATATGCACC 58.483 40.000 0.00 0.00 43.69 5.01
1353 1463 7.169982 GGAACTTCACTATGTGAGTATATGCAC 59.830 40.741 0.00 0.00 43.69 4.57
1354 1464 7.147742 TGGAACTTCACTATGTGAGTATATGCA 60.148 37.037 0.00 0.00 43.69 3.96
1355 1465 7.210174 TGGAACTTCACTATGTGAGTATATGC 58.790 38.462 0.66 0.00 43.69 3.14
1356 1466 8.417106 ACTGGAACTTCACTATGTGAGTATATG 58.583 37.037 0.66 0.00 43.69 1.78
1357 1467 8.540507 ACTGGAACTTCACTATGTGAGTATAT 57.459 34.615 0.66 0.00 43.69 0.86
1358 1468 7.956328 ACTGGAACTTCACTATGTGAGTATA 57.044 36.000 0.66 0.00 43.69 1.47
1364 1474 5.995282 TGGTTAACTGGAACTTCACTATGTG 59.005 40.000 5.42 0.00 34.45 3.21
1435 2699 8.070034 TCCAAGCACAATCAAAATTGAGATAT 57.930 30.769 5.22 0.00 44.25 1.63
1455 2725 7.308469 GCAGAGCATTAGAATTTATCCTCCAAG 60.308 40.741 0.00 0.00 0.00 3.61
1475 2745 1.212229 GCAGCCAAAAGAGCAGAGC 59.788 57.895 0.00 0.00 0.00 4.09
1495 3039 0.767998 GGCCATTCCTCCCCTAGAAG 59.232 60.000 0.00 0.00 0.00 2.85
1743 3295 9.868277 TGTTTGTGTTGAATCTTATCTTTTTGT 57.132 25.926 0.00 0.00 0.00 2.83
1745 3297 9.868277 TGTGTTTGTGTTGAATCTTATCTTTTT 57.132 25.926 0.00 0.00 0.00 1.94
1747 3299 9.467258 CATGTGTTTGTGTTGAATCTTATCTTT 57.533 29.630 0.00 0.00 0.00 2.52
1748 3300 8.632679 ACATGTGTTTGTGTTGAATCTTATCTT 58.367 29.630 0.00 0.00 0.00 2.40
1749 3301 8.077991 CACATGTGTTTGTGTTGAATCTTATCT 58.922 33.333 18.03 0.00 41.65 1.98
1769 3321 0.837691 TCTCCTGGGAGCACACATGT 60.838 55.000 11.51 0.00 41.71 3.21
1794 3346 6.127225 TGCTATGTACAAAGAAGAGAGAGCAT 60.127 38.462 0.00 0.00 30.57 3.79
1795 3347 5.185828 TGCTATGTACAAAGAAGAGAGAGCA 59.814 40.000 0.00 0.00 32.96 4.26
1796 3348 5.655488 TGCTATGTACAAAGAAGAGAGAGC 58.345 41.667 0.00 0.00 0.00 4.09
1797 3349 5.748152 GCTGCTATGTACAAAGAAGAGAGAG 59.252 44.000 0.00 0.00 0.00 3.20
1798 3350 5.185828 TGCTGCTATGTACAAAGAAGAGAGA 59.814 40.000 0.00 0.00 0.00 3.10
1840 3392 8.930846 ACAGACTGGTAGTAGTAGTTTTAGAA 57.069 34.615 7.51 0.00 0.00 2.10
1841 3393 8.790718 CAACAGACTGGTAGTAGTAGTTTTAGA 58.209 37.037 7.51 0.00 30.98 2.10
1842 3394 8.027771 CCAACAGACTGGTAGTAGTAGTTTTAG 58.972 40.741 7.51 0.00 30.98 1.85
1890 3443 8.647143 TCACAAACCATTTGAAAGAAGAAATC 57.353 30.769 8.24 0.00 43.26 2.17
1895 3448 8.652810 AGAAATCACAAACCATTTGAAAGAAG 57.347 30.769 8.24 0.00 43.26 2.85
1902 3455 6.238157 CCACACAAGAAATCACAAACCATTTG 60.238 38.462 0.00 0.00 45.95 2.32
1936 3491 5.048083 TCCCACACAAATGAAGATAACAAGC 60.048 40.000 0.00 0.00 0.00 4.01
1938 3493 6.239176 GGTTCCCACACAAATGAAGATAACAA 60.239 38.462 0.00 0.00 0.00 2.83
1939 3494 5.242838 GGTTCCCACACAAATGAAGATAACA 59.757 40.000 0.00 0.00 0.00 2.41
1940 3495 5.242838 TGGTTCCCACACAAATGAAGATAAC 59.757 40.000 0.00 0.00 0.00 1.89
2037 3597 6.916440 TCTGTTTGTGATCAATGAGGAAATG 58.084 36.000 0.00 0.00 33.32 2.32
2084 3647 7.493743 TCCCAAATCAAATGAATTTGTTGTG 57.506 32.000 13.87 11.19 45.49 3.33
2085 3648 7.937942 TCATCCCAAATCAAATGAATTTGTTGT 59.062 29.630 13.87 0.73 45.49 3.32
2086 3649 8.325421 TCATCCCAAATCAAATGAATTTGTTG 57.675 30.769 13.87 11.79 45.49 3.33
2087 3650 8.921353 TTCATCCCAAATCAAATGAATTTGTT 57.079 26.923 13.87 4.92 45.49 2.83
2145 3714 4.393990 TGATATGCCGAGAATGATGAATGC 59.606 41.667 0.00 0.00 0.00 3.56
2160 3729 6.471146 AGAGATGTACCTGAATTGATATGCC 58.529 40.000 0.00 0.00 0.00 4.40
2186 3755 7.831691 TCCCTATACAGAGAGAGAATTGAAG 57.168 40.000 0.00 0.00 0.00 3.02
2188 3757 7.587258 TCTTCCCTATACAGAGAGAGAATTGA 58.413 38.462 0.00 0.00 0.00 2.57
2200 3773 9.110502 GTACCATTTTTCTTCTTCCCTATACAG 57.889 37.037 0.00 0.00 0.00 2.74
2205 3778 6.045106 ACCTGTACCATTTTTCTTCTTCCCTA 59.955 38.462 0.00 0.00 0.00 3.53
2221 3794 2.105821 CCAAGGACTCAAACCTGTACCA 59.894 50.000 0.00 0.00 37.85 3.25
2228 3801 2.358322 TTGGTCCAAGGACTCAAACC 57.642 50.000 18.03 2.58 44.04 3.27
2321 3895 3.179265 CTGTAACACGGAGCGGCG 61.179 66.667 0.51 0.51 0.00 6.46
2353 3927 1.807165 CATGGACACGGTCGAGCTG 60.807 63.158 13.48 12.02 32.65 4.24
2404 3978 2.249139 GTGCGGGGATAGAGAGGTTAT 58.751 52.381 0.00 0.00 0.00 1.89
2423 3997 2.026822 GTCCCATCACAGGAACTCATGT 60.027 50.000 0.00 0.00 42.05 3.21
2430 4004 1.203001 GGTTTGGTCCCATCACAGGAA 60.203 52.381 0.00 0.00 34.43 3.36
2437 4011 1.586154 CTGCGTGGTTTGGTCCCATC 61.586 60.000 0.00 0.00 33.76 3.51
2442 4016 0.321653 ATCTCCTGCGTGGTTTGGTC 60.322 55.000 0.00 0.00 37.07 4.02
2460 4034 1.698165 CGTCGCTGTACTTGTGACAT 58.302 50.000 22.77 0.00 42.92 3.06
2622 4426 2.288825 GGAGATGACACAGGTGTTCGAA 60.289 50.000 6.51 0.00 45.05 3.71
2685 4489 3.461773 CCCGACGTGATGGAGGCT 61.462 66.667 0.00 0.00 0.00 4.58
2703 4507 1.890489 TCATTCGTGAACTCCTTCCGA 59.110 47.619 0.00 0.00 31.38 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.