Multiple sequence alignment - TraesCS4A01G483500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G483500 chr4A 100.000 3740 0 0 1 3740 738393601 738389862 0.000000e+00 6907.0
1 TraesCS4A01G483500 chr4A 87.052 1591 177 17 546 2125 738350394 738351966 0.000000e+00 1770.0
2 TraesCS4A01G483500 chr4A 85.402 1692 223 16 2072 3740 737854247 737852557 0.000000e+00 1735.0
3 TraesCS4A01G483500 chr4A 85.863 1634 213 11 2123 3740 738351892 738353523 0.000000e+00 1722.0
4 TraesCS4A01G483500 chr4A 85.192 1641 215 21 2122 3740 738523596 738521962 0.000000e+00 1659.0
5 TraesCS4A01G483500 chr4A 85.458 1561 167 20 570 2127 737847114 737845611 0.000000e+00 1570.0
6 TraesCS4A01G483500 chr4A 87.512 1049 110 10 902 1929 737855294 737854246 0.000000e+00 1192.0
7 TraesCS4A01G483500 chr4A 88.052 929 109 2 2122 3049 737845688 737844761 0.000000e+00 1099.0
8 TraesCS4A01G483500 chr4A 88.706 788 86 3 1280 2066 737639140 737638355 0.000000e+00 959.0
9 TraesCS4A01G483500 chr4A 85.693 664 67 18 628 1284 737647868 737647226 0.000000e+00 675.0
10 TraesCS4A01G483500 chr4A 84.874 476 72 0 1652 2127 738523994 738523519 7.270000e-132 481.0
11 TraesCS4A01G483500 chr4A 85.614 285 26 11 592 868 737855568 737855291 6.110000e-73 285.0
12 TraesCS4A01G483500 chr7D 86.276 1756 209 17 597 2345 5024310 5026040 0.000000e+00 1879.0
13 TraesCS4A01G483500 chr7D 84.447 958 121 17 2342 3277 5031635 5032586 0.000000e+00 918.0
14 TraesCS4A01G483500 chr7D 94.000 50 1 2 154 202 625649897 625649849 1.440000e-09 75.0
15 TraesCS4A01G483500 chr7D 89.831 59 3 3 146 202 227507241 227507184 5.180000e-09 73.1
16 TraesCS4A01G483500 chr7A 86.419 1642 196 19 2122 3740 5352996 5351359 0.000000e+00 1772.0
17 TraesCS4A01G483500 chr7A 85.801 1641 205 20 2122 3740 5000712 5002346 0.000000e+00 1714.0
18 TraesCS4A01G483500 chr7A 85.732 1640 208 19 2122 3740 5611157 5612791 0.000000e+00 1709.0
19 TraesCS4A01G483500 chr7A 85.846 1519 155 25 610 2104 4999284 5000766 0.000000e+00 1559.0
20 TraesCS4A01G483500 chr7A 86.837 1413 157 22 2352 3740 5023345 5024752 0.000000e+00 1552.0
21 TraesCS4A01G483500 chr7A 85.296 1503 183 19 606 2104 5354410 5352942 0.000000e+00 1517.0
22 TraesCS4A01G483500 chr7A 85.244 1518 161 27 603 2104 5609741 5611211 0.000000e+00 1504.0
23 TraesCS4A01G483500 chr7A 84.640 1569 176 42 546 2104 5749169 5747656 0.000000e+00 1502.0
24 TraesCS4A01G483500 chr7A 84.056 1568 164 30 598 2127 5778233 5776714 0.000000e+00 1432.0
25 TraesCS4A01G483500 chr7A 86.260 917 100 16 2833 3729 5772858 5771948 0.000000e+00 972.0
26 TraesCS4A01G483500 chr7A 87.396 841 103 2 1287 2127 5022399 5023236 0.000000e+00 963.0
27 TraesCS4A01G483500 chr7A 88.235 595 70 0 3146 3740 6073370 6073964 0.000000e+00 712.0
28 TraesCS4A01G483500 chr7A 86.815 493 52 8 684 1173 5014717 5015199 4.250000e-149 538.0
29 TraesCS4A01G483500 chr7A 86.364 88 12 0 55 142 5354927 5354840 3.070000e-16 97.1
30 TraesCS4A01G483500 chr7A 87.179 78 10 0 161 238 186640644 186640721 5.150000e-14 89.8
31 TraesCS4A01G483500 chr7A 88.889 72 4 3 589 657 5014648 5014718 6.660000e-13 86.1
32 TraesCS4A01G483500 chr7A 97.368 38 1 0 550 587 5354447 5354410 8.670000e-07 65.8
33 TraesCS4A01G483500 chrUn 84.099 1327 125 30 598 1886 382627345 382628623 0.000000e+00 1203.0
34 TraesCS4A01G483500 chrUn 85.932 917 103 16 2833 3729 228698046 228697136 0.000000e+00 955.0
35 TraesCS4A01G483500 chr2D 81.804 632 71 22 546 1163 614347474 614348075 1.210000e-134 490.0
36 TraesCS4A01G483500 chr5A 87.778 90 7 4 161 249 38115742 38115656 6.610000e-18 102.0
37 TraesCS4A01G483500 chr3A 89.333 75 6 2 162 235 662559996 662560069 3.980000e-15 93.5
38 TraesCS4A01G483500 chr5B 95.745 47 1 1 161 207 57166 57121 1.440000e-09 75.0
39 TraesCS4A01G483500 chr1D 94.000 50 2 1 154 202 464736342 464736293 1.440000e-09 75.0
40 TraesCS4A01G483500 chr1A 92.308 52 4 0 151 202 587813022 587813073 1.440000e-09 75.0
41 TraesCS4A01G483500 chr1B 92.157 51 4 0 152 202 386204479 386204529 5.180000e-09 73.1
42 TraesCS4A01G483500 chr2A 100.000 28 0 0 210 237 159874387 159874360 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G483500 chr4A 738389862 738393601 3739 True 6907.000000 6907 100.00000 1 3740 1 chr4A.!!$R3 3739
1 TraesCS4A01G483500 chr4A 738350394 738353523 3129 False 1746.000000 1770 86.45750 546 3740 2 chr4A.!!$F1 3194
2 TraesCS4A01G483500 chr4A 737844761 737847114 2353 True 1334.500000 1570 86.75500 570 3049 2 chr4A.!!$R4 2479
3 TraesCS4A01G483500 chr4A 737852557 737855568 3011 True 1070.666667 1735 86.17600 592 3740 3 chr4A.!!$R5 3148
4 TraesCS4A01G483500 chr4A 738521962 738523994 2032 True 1070.000000 1659 85.03300 1652 3740 2 chr4A.!!$R6 2088
5 TraesCS4A01G483500 chr4A 737638355 737639140 785 True 959.000000 959 88.70600 1280 2066 1 chr4A.!!$R1 786
6 TraesCS4A01G483500 chr4A 737647226 737647868 642 True 675.000000 675 85.69300 628 1284 1 chr4A.!!$R2 656
7 TraesCS4A01G483500 chr7D 5024310 5026040 1730 False 1879.000000 1879 86.27600 597 2345 1 chr7D.!!$F1 1748
8 TraesCS4A01G483500 chr7D 5031635 5032586 951 False 918.000000 918 84.44700 2342 3277 1 chr7D.!!$F2 935
9 TraesCS4A01G483500 chr7A 4999284 5002346 3062 False 1636.500000 1714 85.82350 610 3740 2 chr7A.!!$F3 3130
10 TraesCS4A01G483500 chr7A 5609741 5612791 3050 False 1606.500000 1709 85.48800 603 3740 2 chr7A.!!$F6 3137
11 TraesCS4A01G483500 chr7A 5747656 5749169 1513 True 1502.000000 1502 84.64000 546 2104 1 chr7A.!!$R1 1558
12 TraesCS4A01G483500 chr7A 5022399 5024752 2353 False 1257.500000 1552 87.11650 1287 3740 2 chr7A.!!$F5 2453
13 TraesCS4A01G483500 chr7A 5771948 5778233 6285 True 1202.000000 1432 85.15800 598 3729 2 chr7A.!!$R3 3131
14 TraesCS4A01G483500 chr7A 5351359 5354927 3568 True 862.975000 1772 88.86175 55 3740 4 chr7A.!!$R2 3685
15 TraesCS4A01G483500 chr7A 6073370 6073964 594 False 712.000000 712 88.23500 3146 3740 1 chr7A.!!$F1 594
16 TraesCS4A01G483500 chr7A 5014648 5015199 551 False 312.050000 538 87.85200 589 1173 2 chr7A.!!$F4 584
17 TraesCS4A01G483500 chrUn 382627345 382628623 1278 False 1203.000000 1203 84.09900 598 1886 1 chrUn.!!$F1 1288
18 TraesCS4A01G483500 chrUn 228697136 228698046 910 True 955.000000 955 85.93200 2833 3729 1 chrUn.!!$R1 896
19 TraesCS4A01G483500 chr2D 614347474 614348075 601 False 490.000000 490 81.80400 546 1163 1 chr2D.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 403 0.032540 CCTGGCCTGTTTTGTTCAGC 59.967 55.000 3.32 0.0 0.00 4.26 F
732 835 0.035739 TTGCCGGTCAGTAAGGGAAC 59.964 55.000 1.90 0.0 30.39 3.62 F
734 837 0.252197 GCCGGTCAGTAAGGGAACAT 59.748 55.000 1.90 0.0 0.00 2.71 F
1903 2118 1.202989 TGCAGGAGTTACATTTGGGCA 60.203 47.619 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2121 2336 0.099968 CATGCCCGCTGAGATTGTTG 59.900 55.0 0.0 0.0 0.0 3.33 R
2122 2337 0.322816 ACATGCCCGCTGAGATTGTT 60.323 50.0 0.0 0.0 0.0 2.83 R
2123 2338 1.028330 CACATGCCCGCTGAGATTGT 61.028 55.0 0.0 0.0 0.0 2.71 R
3078 6592 0.171007 GTCATGGCCGTCACATTTGG 59.829 55.0 0.0 0.0 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.859427 CAAATATTTGTATGATGTTCCTTGTGT 57.141 29.630 18.32 0.00 33.59 3.72
35 36 9.859427 AAATATTTGTATGATGTTCCTTGTGTG 57.141 29.630 0.00 0.00 0.00 3.82
36 37 4.764679 TTGTATGATGTTCCTTGTGTGC 57.235 40.909 0.00 0.00 0.00 4.57
37 38 3.749226 TGTATGATGTTCCTTGTGTGCA 58.251 40.909 0.00 0.00 0.00 4.57
38 39 4.334552 TGTATGATGTTCCTTGTGTGCAT 58.665 39.130 0.00 0.00 0.00 3.96
39 40 3.861276 ATGATGTTCCTTGTGTGCATG 57.139 42.857 0.00 0.00 0.00 4.06
40 41 2.861274 TGATGTTCCTTGTGTGCATGA 58.139 42.857 0.00 0.00 0.00 3.07
41 42 3.423749 TGATGTTCCTTGTGTGCATGAT 58.576 40.909 0.00 0.00 0.00 2.45
42 43 4.587891 TGATGTTCCTTGTGTGCATGATA 58.412 39.130 0.00 0.00 0.00 2.15
43 44 5.195185 TGATGTTCCTTGTGTGCATGATAT 58.805 37.500 0.00 0.00 0.00 1.63
44 45 5.653330 TGATGTTCCTTGTGTGCATGATATT 59.347 36.000 0.00 0.00 0.00 1.28
45 46 5.313520 TGTTCCTTGTGTGCATGATATTG 57.686 39.130 0.00 0.00 0.00 1.90
46 47 4.766373 TGTTCCTTGTGTGCATGATATTGT 59.234 37.500 0.00 0.00 0.00 2.71
47 48 4.968812 TCCTTGTGTGCATGATATTGTG 57.031 40.909 0.00 0.00 0.00 3.33
48 49 4.587891 TCCTTGTGTGCATGATATTGTGA 58.412 39.130 0.00 0.00 0.00 3.58
49 50 5.195185 TCCTTGTGTGCATGATATTGTGAT 58.805 37.500 0.00 0.00 0.00 3.06
50 51 6.355747 TCCTTGTGTGCATGATATTGTGATA 58.644 36.000 0.00 0.00 0.00 2.15
51 52 6.827762 TCCTTGTGTGCATGATATTGTGATAA 59.172 34.615 0.00 0.00 0.00 1.75
52 53 7.012610 TCCTTGTGTGCATGATATTGTGATAAG 59.987 37.037 0.00 0.00 0.00 1.73
53 54 7.012610 CCTTGTGTGCATGATATTGTGATAAGA 59.987 37.037 0.00 0.00 0.00 2.10
54 55 7.862512 TGTGTGCATGATATTGTGATAAGAA 57.137 32.000 0.00 0.00 0.00 2.52
55 56 8.454570 TGTGTGCATGATATTGTGATAAGAAT 57.545 30.769 0.00 0.00 0.00 2.40
56 57 9.558396 TGTGTGCATGATATTGTGATAAGAATA 57.442 29.630 0.00 0.00 0.00 1.75
105 106 1.468914 GTTGTCAATTCTCGCCTTCCC 59.531 52.381 0.00 0.00 0.00 3.97
142 143 5.805994 GTCCAGTACTCTAATGCTTGTACAC 59.194 44.000 0.00 0.00 38.09 2.90
143 144 5.479027 TCCAGTACTCTAATGCTTGTACACA 59.521 40.000 0.00 0.00 38.09 3.72
144 145 5.807520 CCAGTACTCTAATGCTTGTACACAG 59.192 44.000 0.00 0.00 38.09 3.66
146 147 4.891992 ACTCTAATGCTTGTACACAGGT 57.108 40.909 0.00 0.00 0.00 4.00
147 148 4.569943 ACTCTAATGCTTGTACACAGGTG 58.430 43.478 0.00 0.00 0.00 4.00
148 149 4.283467 ACTCTAATGCTTGTACACAGGTGA 59.717 41.667 6.40 0.00 0.00 4.02
151 152 2.700722 TGCTTGTACACAGGTGAACA 57.299 45.000 6.40 0.00 0.00 3.18
152 153 2.285083 TGCTTGTACACAGGTGAACAC 58.715 47.619 6.40 2.11 0.00 3.32
153 154 1.260561 GCTTGTACACAGGTGAACACG 59.739 52.381 6.40 0.00 0.00 4.49
155 156 0.175989 TGTACACAGGTGAACACGCA 59.824 50.000 6.40 0.00 0.00 5.24
156 157 0.580104 GTACACAGGTGAACACGCAC 59.420 55.000 6.40 0.00 38.05 5.34
157 158 0.872451 TACACAGGTGAACACGCACG 60.872 55.000 6.40 0.00 39.66 5.34
158 159 3.269347 ACAGGTGAACACGCACGC 61.269 61.111 0.00 0.00 39.66 5.34
159 160 2.967076 CAGGTGAACACGCACGCT 60.967 61.111 0.00 0.00 39.66 5.07
160 161 2.661866 AGGTGAACACGCACGCTC 60.662 61.111 0.00 0.00 39.66 5.03
161 162 2.661866 GGTGAACACGCACGCTCT 60.662 61.111 0.00 0.00 39.66 4.09
162 163 2.658707 GGTGAACACGCACGCTCTC 61.659 63.158 0.00 0.00 39.66 3.20
163 164 2.355837 TGAACACGCACGCTCTCC 60.356 61.111 0.00 0.00 0.00 3.71
164 165 3.112709 GAACACGCACGCTCTCCC 61.113 66.667 0.00 0.00 0.00 4.30
165 166 3.575351 GAACACGCACGCTCTCCCT 62.575 63.158 0.00 0.00 0.00 4.20
166 167 3.575351 AACACGCACGCTCTCCCTC 62.575 63.158 0.00 0.00 0.00 4.30
167 168 4.803426 CACGCACGCTCTCCCTCC 62.803 72.222 0.00 0.00 0.00 4.30
170 171 4.500116 GCACGCTCTCCCTCCGTC 62.500 72.222 0.00 0.00 32.18 4.79
171 172 3.827898 CACGCTCTCCCTCCGTCC 61.828 72.222 0.00 0.00 32.18 4.79
174 175 4.816984 GCTCTCCCTCCGTCCGGA 62.817 72.222 0.00 0.00 42.90 5.14
175 176 2.044252 CTCTCCCTCCGTCCGGAA 60.044 66.667 5.23 0.00 44.66 4.30
177 178 1.001248 TCTCCCTCCGTCCGGAATT 59.999 57.895 5.23 0.00 44.66 2.17
179 180 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
180 181 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
182 183 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
183 184 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
184 185 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
188 189 1.659098 GTCCGGAATTACTTGTCGCAG 59.341 52.381 5.23 0.00 0.00 5.18
189 190 1.546923 TCCGGAATTACTTGTCGCAGA 59.453 47.619 0.00 0.00 0.00 4.26
190 191 2.028839 TCCGGAATTACTTGTCGCAGAA 60.029 45.455 0.00 0.00 39.69 3.02
194 195 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
195 196 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
198 199 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
199 200 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
200 201 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
201 202 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
202 203 3.466836 TGTCGCAGAAATGGATGTATCC 58.533 45.455 3.91 3.91 43.31 2.59
218 219 7.431249 GGATGTATCCATTCTACGACAAGTAA 58.569 38.462 6.03 0.00 46.38 2.24
219 220 7.381678 GGATGTATCCATTCTACGACAAGTAAC 59.618 40.741 6.03 0.00 46.38 2.50
220 221 7.400599 TGTATCCATTCTACGACAAGTAACT 57.599 36.000 0.00 0.00 34.45 2.24
221 222 7.478322 TGTATCCATTCTACGACAAGTAACTC 58.522 38.462 0.00 0.00 34.45 3.01
222 223 4.978186 TCCATTCTACGACAAGTAACTCG 58.022 43.478 0.00 0.00 34.45 4.18
223 224 4.103357 CCATTCTACGACAAGTAACTCGG 58.897 47.826 0.00 0.00 34.45 4.63
224 225 3.837213 TTCTACGACAAGTAACTCGGG 57.163 47.619 0.00 0.00 34.45 5.14
225 226 3.057969 TCTACGACAAGTAACTCGGGA 57.942 47.619 0.00 0.00 34.45 5.14
226 227 3.614092 TCTACGACAAGTAACTCGGGAT 58.386 45.455 0.00 0.00 34.45 3.85
227 228 2.649331 ACGACAAGTAACTCGGGATG 57.351 50.000 0.00 0.00 34.07 3.51
228 229 1.203994 ACGACAAGTAACTCGGGATGG 59.796 52.381 0.00 0.00 34.07 3.51
229 230 1.475280 CGACAAGTAACTCGGGATGGA 59.525 52.381 0.00 0.00 0.00 3.41
230 231 2.479730 CGACAAGTAACTCGGGATGGAG 60.480 54.545 0.00 0.00 39.97 3.86
231 232 1.831736 ACAAGTAACTCGGGATGGAGG 59.168 52.381 0.00 0.00 38.39 4.30
232 233 1.139058 CAAGTAACTCGGGATGGAGGG 59.861 57.143 0.00 0.00 38.39 4.30
233 234 0.635009 AGTAACTCGGGATGGAGGGA 59.365 55.000 0.00 0.00 38.39 4.20
234 235 1.041437 GTAACTCGGGATGGAGGGAG 58.959 60.000 0.00 0.00 38.39 4.30
235 236 0.635009 TAACTCGGGATGGAGGGAGT 59.365 55.000 0.00 0.00 41.25 3.85
236 237 0.635009 AACTCGGGATGGAGGGAGTA 59.365 55.000 0.00 0.00 38.72 2.59
237 238 0.186386 ACTCGGGATGGAGGGAGTAG 59.814 60.000 0.00 0.00 37.94 2.57
238 239 0.478942 CTCGGGATGGAGGGAGTAGA 59.521 60.000 0.00 0.00 0.00 2.59
239 240 0.931468 TCGGGATGGAGGGAGTAGAA 59.069 55.000 0.00 0.00 0.00 2.10
247 248 7.563924 CGGGATGGAGGGAGTAGAATATTAATA 59.436 40.741 0.00 0.00 0.00 0.98
252 253 8.548877 TGGAGGGAGTAGAATATTAATATTGCC 58.451 37.037 22.48 13.99 33.37 4.52
253 254 7.711339 GGAGGGAGTAGAATATTAATATTGCCG 59.289 40.741 22.48 0.00 33.37 5.69
268 269 9.944663 TTAATATTGCCGTGATGATTAAAGTTC 57.055 29.630 0.00 0.00 0.00 3.01
273 274 4.879545 GCCGTGATGATTAAAGTTCCCTTA 59.120 41.667 0.00 0.00 0.00 2.69
276 277 7.416326 GCCGTGATGATTAAAGTTCCCTTATTT 60.416 37.037 0.00 0.00 0.00 1.40
286 318 7.468141 AAAGTTCCCTTATTTTCATCCTCAC 57.532 36.000 0.00 0.00 0.00 3.51
287 319 6.394345 AGTTCCCTTATTTTCATCCTCACT 57.606 37.500 0.00 0.00 0.00 3.41
305 337 6.808008 CTCACTAAGGAGCTTGAAAATCAA 57.192 37.500 0.00 0.00 34.79 2.57
308 340 9.118300 CTCACTAAGGAGCTTGAAAATCAATAT 57.882 33.333 0.00 0.00 35.59 1.28
328 360 7.567250 TCAATATACTAATGGAACTCCTGACCA 59.433 37.037 0.00 0.00 38.09 4.02
329 361 5.878406 ATACTAATGGAACTCCTGACCAG 57.122 43.478 0.00 0.00 37.12 4.00
330 362 3.521727 ACTAATGGAACTCCTGACCAGT 58.478 45.455 0.00 0.00 37.12 4.00
331 363 3.910627 ACTAATGGAACTCCTGACCAGTT 59.089 43.478 0.00 0.00 37.12 3.16
332 364 3.884037 AATGGAACTCCTGACCAGTTT 57.116 42.857 0.00 0.00 37.12 2.66
333 365 3.884037 ATGGAACTCCTGACCAGTTTT 57.116 42.857 0.00 0.00 37.12 2.43
334 366 2.930950 TGGAACTCCTGACCAGTTTTG 58.069 47.619 0.00 0.00 34.10 2.44
335 367 2.241176 TGGAACTCCTGACCAGTTTTGT 59.759 45.455 0.00 0.00 34.10 2.83
336 368 3.288092 GGAACTCCTGACCAGTTTTGTT 58.712 45.455 0.00 0.00 34.10 2.83
337 369 3.315470 GGAACTCCTGACCAGTTTTGTTC 59.685 47.826 0.00 0.00 34.10 3.18
338 370 3.933861 ACTCCTGACCAGTTTTGTTCT 57.066 42.857 0.00 0.00 0.00 3.01
339 371 3.809905 ACTCCTGACCAGTTTTGTTCTC 58.190 45.455 0.00 0.00 0.00 2.87
340 372 3.142174 CTCCTGACCAGTTTTGTTCTCC 58.858 50.000 0.00 0.00 0.00 3.71
341 373 2.777692 TCCTGACCAGTTTTGTTCTCCT 59.222 45.455 0.00 0.00 0.00 3.69
342 374 3.142174 CCTGACCAGTTTTGTTCTCCTC 58.858 50.000 0.00 0.00 0.00 3.71
343 375 3.433598 CCTGACCAGTTTTGTTCTCCTCA 60.434 47.826 0.00 0.00 0.00 3.86
344 376 4.199310 CTGACCAGTTTTGTTCTCCTCAA 58.801 43.478 0.00 0.00 0.00 3.02
345 377 4.792068 TGACCAGTTTTGTTCTCCTCAAT 58.208 39.130 0.00 0.00 0.00 2.57
346 378 4.821805 TGACCAGTTTTGTTCTCCTCAATC 59.178 41.667 0.00 0.00 0.00 2.67
347 379 3.815401 ACCAGTTTTGTTCTCCTCAATCG 59.185 43.478 0.00 0.00 0.00 3.34
348 380 4.065088 CCAGTTTTGTTCTCCTCAATCGA 58.935 43.478 0.00 0.00 0.00 3.59
349 381 4.153117 CCAGTTTTGTTCTCCTCAATCGAG 59.847 45.833 0.00 0.00 39.16 4.04
350 382 4.752101 CAGTTTTGTTCTCCTCAATCGAGT 59.248 41.667 0.00 0.00 37.59 4.18
351 383 5.926542 CAGTTTTGTTCTCCTCAATCGAGTA 59.073 40.000 0.00 0.00 37.59 2.59
352 384 5.927115 AGTTTTGTTCTCCTCAATCGAGTAC 59.073 40.000 0.00 0.00 37.59 2.73
353 385 4.451629 TTGTTCTCCTCAATCGAGTACC 57.548 45.455 0.00 0.00 37.59 3.34
354 386 3.698289 TGTTCTCCTCAATCGAGTACCT 58.302 45.455 0.00 0.00 37.59 3.08
355 387 3.444034 TGTTCTCCTCAATCGAGTACCTG 59.556 47.826 0.00 0.00 37.59 4.00
356 388 2.656002 TCTCCTCAATCGAGTACCTGG 58.344 52.381 0.00 0.00 37.59 4.45
357 389 1.067821 CTCCTCAATCGAGTACCTGGC 59.932 57.143 0.00 0.00 37.59 4.85
358 390 0.105039 CCTCAATCGAGTACCTGGCC 59.895 60.000 0.00 0.00 37.59 5.36
359 391 1.115467 CTCAATCGAGTACCTGGCCT 58.885 55.000 3.32 0.00 34.29 5.19
360 392 0.824109 TCAATCGAGTACCTGGCCTG 59.176 55.000 3.32 2.54 0.00 4.85
361 393 0.537188 CAATCGAGTACCTGGCCTGT 59.463 55.000 3.32 3.69 0.00 4.00
362 394 1.066143 CAATCGAGTACCTGGCCTGTT 60.066 52.381 3.32 0.00 0.00 3.16
363 395 1.276622 ATCGAGTACCTGGCCTGTTT 58.723 50.000 3.32 0.00 0.00 2.83
364 396 1.053424 TCGAGTACCTGGCCTGTTTT 58.947 50.000 3.32 0.00 0.00 2.43
365 397 1.156736 CGAGTACCTGGCCTGTTTTG 58.843 55.000 3.32 0.00 0.00 2.44
366 398 1.542547 CGAGTACCTGGCCTGTTTTGT 60.543 52.381 3.32 0.00 0.00 2.83
367 399 2.583143 GAGTACCTGGCCTGTTTTGTT 58.417 47.619 3.32 0.00 0.00 2.83
368 400 2.552743 GAGTACCTGGCCTGTTTTGTTC 59.447 50.000 3.32 0.00 0.00 3.18
369 401 2.092103 AGTACCTGGCCTGTTTTGTTCA 60.092 45.455 3.32 0.00 0.00 3.18
370 402 1.402787 ACCTGGCCTGTTTTGTTCAG 58.597 50.000 3.32 0.00 0.00 3.02
371 403 0.032540 CCTGGCCTGTTTTGTTCAGC 59.967 55.000 3.32 0.00 0.00 4.26
372 404 1.035139 CTGGCCTGTTTTGTTCAGCT 58.965 50.000 3.32 0.00 0.00 4.24
373 405 1.000938 CTGGCCTGTTTTGTTCAGCTC 60.001 52.381 3.32 0.00 0.00 4.09
374 406 1.032014 GGCCTGTTTTGTTCAGCTCA 58.968 50.000 0.00 0.00 0.00 4.26
375 407 1.615392 GGCCTGTTTTGTTCAGCTCAT 59.385 47.619 0.00 0.00 0.00 2.90
376 408 2.352127 GGCCTGTTTTGTTCAGCTCATC 60.352 50.000 0.00 0.00 0.00 2.92
377 409 2.294233 GCCTGTTTTGTTCAGCTCATCA 59.706 45.455 0.00 0.00 0.00 3.07
378 410 3.057033 GCCTGTTTTGTTCAGCTCATCAT 60.057 43.478 0.00 0.00 0.00 2.45
379 411 4.482386 CCTGTTTTGTTCAGCTCATCATG 58.518 43.478 0.00 0.00 0.00 3.07
380 412 4.482386 CTGTTTTGTTCAGCTCATCATGG 58.518 43.478 0.00 0.00 0.00 3.66
381 413 4.143543 TGTTTTGTTCAGCTCATCATGGA 58.856 39.130 0.00 0.00 0.00 3.41
382 414 4.768448 TGTTTTGTTCAGCTCATCATGGAT 59.232 37.500 0.00 0.00 0.00 3.41
383 415 4.976224 TTTGTTCAGCTCATCATGGATG 57.024 40.909 0.00 0.00 41.00 3.51
384 416 3.918294 TGTTCAGCTCATCATGGATGA 57.082 42.857 8.48 8.48 45.35 2.92
385 417 4.224991 TGTTCAGCTCATCATGGATGAA 57.775 40.909 9.89 3.52 46.51 2.57
386 418 3.943381 TGTTCAGCTCATCATGGATGAAC 59.057 43.478 21.12 21.12 46.51 3.18
392 424 3.434739 GCTCATCATGGATGAACCTCCTT 60.435 47.826 9.89 0.00 46.51 3.36
399 431 1.821136 GGATGAACCTCCTTGCCTTTG 59.179 52.381 0.00 0.00 35.41 2.77
400 432 1.821136 GATGAACCTCCTTGCCTTTGG 59.179 52.381 0.00 0.00 0.00 3.28
401 433 0.850100 TGAACCTCCTTGCCTTTGGA 59.150 50.000 0.00 0.00 0.00 3.53
402 434 1.428912 TGAACCTCCTTGCCTTTGGAT 59.571 47.619 0.00 0.00 0.00 3.41
410 442 3.638160 TCCTTGCCTTTGGATATCATTGC 59.362 43.478 4.83 0.48 0.00 3.56
415 447 4.114794 GCCTTTGGATATCATTGCACAAC 58.885 43.478 4.83 0.00 0.00 3.32
421 453 1.093972 TATCATTGCACAACCCTGCG 58.906 50.000 0.00 0.00 40.31 5.18
427 459 1.212751 GCACAACCCTGCGGAAATC 59.787 57.895 0.00 0.00 0.00 2.17
428 460 1.523154 GCACAACCCTGCGGAAATCA 61.523 55.000 0.00 0.00 0.00 2.57
429 461 0.240945 CACAACCCTGCGGAAATCAC 59.759 55.000 0.00 0.00 0.00 3.06
430 462 0.893727 ACAACCCTGCGGAAATCACC 60.894 55.000 0.00 0.00 0.00 4.02
431 463 0.893270 CAACCCTGCGGAAATCACCA 60.893 55.000 0.00 0.00 0.00 4.17
432 464 0.609131 AACCCTGCGGAAATCACCAG 60.609 55.000 0.00 0.00 0.00 4.00
433 465 1.002134 CCCTGCGGAAATCACCAGT 60.002 57.895 0.00 0.00 0.00 4.00
434 466 1.308069 CCCTGCGGAAATCACCAGTG 61.308 60.000 0.00 0.00 0.00 3.66
435 467 0.606401 CCTGCGGAAATCACCAGTGT 60.606 55.000 0.00 0.00 0.00 3.55
436 468 1.238439 CTGCGGAAATCACCAGTGTT 58.762 50.000 0.00 0.00 0.00 3.32
437 469 1.608590 CTGCGGAAATCACCAGTGTTT 59.391 47.619 0.00 0.00 0.00 2.83
438 470 2.028130 TGCGGAAATCACCAGTGTTTT 58.972 42.857 6.55 6.55 35.79 2.43
439 471 2.428890 TGCGGAAATCACCAGTGTTTTT 59.571 40.909 7.95 5.17 33.94 1.94
440 472 2.794350 GCGGAAATCACCAGTGTTTTTG 59.206 45.455 7.95 5.99 33.94 2.44
441 473 3.736740 GCGGAAATCACCAGTGTTTTTGT 60.737 43.478 7.95 0.00 33.94 2.83
442 474 4.041723 CGGAAATCACCAGTGTTTTTGTC 58.958 43.478 7.95 0.00 33.94 3.18
443 475 4.439426 CGGAAATCACCAGTGTTTTTGTCA 60.439 41.667 7.95 0.00 33.94 3.58
444 476 5.415221 GGAAATCACCAGTGTTTTTGTCAA 58.585 37.500 7.95 0.00 33.94 3.18
445 477 5.872070 GGAAATCACCAGTGTTTTTGTCAAA 59.128 36.000 7.95 0.00 33.94 2.69
446 478 6.035975 GGAAATCACCAGTGTTTTTGTCAAAG 59.964 38.462 7.95 0.00 33.94 2.77
447 479 5.659440 ATCACCAGTGTTTTTGTCAAAGT 57.341 34.783 0.00 0.00 0.00 2.66
448 480 4.804108 TCACCAGTGTTTTTGTCAAAGTG 58.196 39.130 0.00 2.26 0.00 3.16
449 481 3.367630 CACCAGTGTTTTTGTCAAAGTGC 59.632 43.478 0.00 0.00 0.00 4.40
450 482 3.006323 ACCAGTGTTTTTGTCAAAGTGCA 59.994 39.130 0.00 0.00 0.00 4.57
451 483 3.613737 CCAGTGTTTTTGTCAAAGTGCAG 59.386 43.478 0.00 0.00 0.00 4.41
452 484 3.061161 CAGTGTTTTTGTCAAAGTGCAGC 59.939 43.478 0.00 0.00 0.00 5.25
453 485 2.348362 GTGTTTTTGTCAAAGTGCAGCC 59.652 45.455 0.00 0.00 0.00 4.85
454 486 1.933181 GTTTTTGTCAAAGTGCAGCCC 59.067 47.619 0.00 0.00 0.00 5.19
455 487 0.102120 TTTTGTCAAAGTGCAGCCCG 59.898 50.000 0.00 0.00 0.00 6.13
456 488 1.733402 TTTGTCAAAGTGCAGCCCGG 61.733 55.000 0.00 0.00 0.00 5.73
457 489 2.594592 GTCAAAGTGCAGCCCGGT 60.595 61.111 0.00 0.00 0.00 5.28
458 490 2.281484 TCAAAGTGCAGCCCGGTC 60.281 61.111 0.00 0.00 0.00 4.79
459 491 3.365265 CAAAGTGCAGCCCGGTCC 61.365 66.667 0.00 0.00 0.00 4.46
461 493 3.850098 AAAGTGCAGCCCGGTCCTG 62.850 63.158 13.44 13.44 0.00 3.86
463 495 4.767255 GTGCAGCCCGGTCCTGAG 62.767 72.222 20.05 0.00 32.03 3.35
465 497 4.767255 GCAGCCCGGTCCTGAGTG 62.767 72.222 20.05 0.00 32.03 3.51
475 507 4.785453 CCTGAGTGGCCCGCTTCC 62.785 72.222 0.00 0.00 0.00 3.46
476 508 4.785453 CTGAGTGGCCCGCTTCCC 62.785 72.222 0.00 0.00 0.00 3.97
486 518 1.227556 CCGCTTCCCAGGGATAACG 60.228 63.158 9.80 13.36 34.82 3.18
487 519 1.682451 CCGCTTCCCAGGGATAACGA 61.682 60.000 21.39 2.13 34.82 3.85
500 532 3.071479 GGATAACGACAGCAACAAGGAA 58.929 45.455 0.00 0.00 0.00 3.36
501 533 3.120304 GGATAACGACAGCAACAAGGAAC 60.120 47.826 0.00 0.00 0.00 3.62
538 593 6.202379 CACTTACATATCATTCAGTGAGCTGG 59.798 42.308 0.00 0.00 42.78 4.85
595 686 0.609131 AAATTCACTGGCTGGGGACG 60.609 55.000 0.00 0.00 0.00 4.79
657 752 3.427573 TCTCCATTCCTGACGTGAACTA 58.572 45.455 0.00 0.00 0.00 2.24
658 753 3.192844 TCTCCATTCCTGACGTGAACTAC 59.807 47.826 0.00 0.00 0.00 2.73
659 754 3.162666 TCCATTCCTGACGTGAACTACT 58.837 45.455 0.00 0.00 0.00 2.57
660 755 3.576982 TCCATTCCTGACGTGAACTACTT 59.423 43.478 0.00 0.00 0.00 2.24
661 756 3.679980 CCATTCCTGACGTGAACTACTTG 59.320 47.826 0.00 0.00 0.00 3.16
662 757 3.380479 TTCCTGACGTGAACTACTTGG 57.620 47.619 0.00 0.00 0.00 3.61
663 758 1.000506 TCCTGACGTGAACTACTTGGC 59.999 52.381 0.00 0.00 0.00 4.52
664 759 1.060713 CTGACGTGAACTACTTGGCG 58.939 55.000 0.00 0.00 0.00 5.69
692 792 1.127397 CTGTGTACATGCTTGCTCACG 59.873 52.381 16.67 11.03 34.56 4.35
730 833 0.251916 CATTGCCGGTCAGTAAGGGA 59.748 55.000 1.90 0.00 0.00 4.20
731 834 0.988832 ATTGCCGGTCAGTAAGGGAA 59.011 50.000 1.90 0.00 39.60 3.97
732 835 0.035739 TTGCCGGTCAGTAAGGGAAC 59.964 55.000 1.90 0.00 30.39 3.62
733 836 1.122632 TGCCGGTCAGTAAGGGAACA 61.123 55.000 1.90 0.00 0.00 3.18
734 837 0.252197 GCCGGTCAGTAAGGGAACAT 59.748 55.000 1.90 0.00 0.00 2.71
735 838 2.012051 GCCGGTCAGTAAGGGAACATG 61.012 57.143 1.90 0.00 0.00 3.21
736 839 1.406887 CCGGTCAGTAAGGGAACATGG 60.407 57.143 0.00 0.00 0.00 3.66
737 840 1.553248 CGGTCAGTAAGGGAACATGGA 59.447 52.381 0.00 0.00 0.00 3.41
738 841 2.677037 CGGTCAGTAAGGGAACATGGAC 60.677 54.545 0.00 0.00 0.00 4.02
739 842 2.572104 GGTCAGTAAGGGAACATGGACT 59.428 50.000 0.00 0.00 0.00 3.85
740 843 3.369576 GGTCAGTAAGGGAACATGGACTC 60.370 52.174 0.00 0.00 0.00 3.36
741 844 3.260884 GTCAGTAAGGGAACATGGACTCA 59.739 47.826 0.00 0.00 0.00 3.41
742 845 3.515502 TCAGTAAGGGAACATGGACTCAG 59.484 47.826 0.00 0.00 0.00 3.35
743 846 3.261897 CAGTAAGGGAACATGGACTCAGT 59.738 47.826 0.00 0.00 0.00 3.41
744 847 3.515901 AGTAAGGGAACATGGACTCAGTC 59.484 47.826 0.00 0.00 0.00 3.51
745 848 2.030027 AGGGAACATGGACTCAGTCA 57.970 50.000 7.24 0.00 33.68 3.41
746 849 2.555664 AGGGAACATGGACTCAGTCAT 58.444 47.619 7.24 0.00 33.68 3.06
747 850 3.724478 AGGGAACATGGACTCAGTCATA 58.276 45.455 7.24 0.00 33.68 2.15
748 851 4.104086 AGGGAACATGGACTCAGTCATAA 58.896 43.478 7.24 0.00 33.68 1.90
749 852 4.723789 AGGGAACATGGACTCAGTCATAAT 59.276 41.667 7.24 0.00 33.68 1.28
791 929 3.243501 ACAACTAGCACGAAACTCCGTTA 60.244 43.478 0.00 0.00 41.29 3.18
824 962 2.535012 GAGGAATCCATCGTCTTCCC 57.465 55.000 0.61 0.00 39.43 3.97
850 990 2.264794 GTACCACCACTGCCGAGG 59.735 66.667 0.00 0.00 0.00 4.63
897 1037 1.239968 CCAACTTGCTGGCCTCAGAC 61.240 60.000 3.32 0.00 43.49 3.51
1086 1238 2.208527 GACCGGCCATGTCCTTAGA 58.791 57.895 0.00 0.00 0.00 2.10
1164 1370 4.380550 GCTTTGGTTGGCCAGATAAGTAAC 60.381 45.833 5.11 0.00 46.91 2.50
1166 1372 4.650972 TGGTTGGCCAGATAAGTAACTT 57.349 40.909 5.11 0.00 40.46 2.66
1173 1379 5.538433 TGGCCAGATAAGTAACTTTTTGCTT 59.462 36.000 0.00 0.00 40.41 3.91
1261 1470 2.157738 CAGAGTTCTTGGGCTCTTTGG 58.842 52.381 0.00 0.00 39.80 3.28
1262 1471 1.777272 AGAGTTCTTGGGCTCTTTGGT 59.223 47.619 0.00 0.00 38.81 3.67
1278 1487 6.991531 GCTCTTTGGTGAGATTGAGATATCTT 59.008 38.462 6.70 0.00 35.06 2.40
1445 1657 7.472334 ACTTGCAGTATCTTGGAATGAATTT 57.528 32.000 0.00 0.00 0.00 1.82
1446 1658 7.899973 ACTTGCAGTATCTTGGAATGAATTTT 58.100 30.769 0.00 0.00 0.00 1.82
1518 1730 4.324563 CCTTCTTTGAAGGCCCTCAATCTA 60.325 45.833 17.49 2.31 35.31 1.98
1523 1735 2.037144 GAAGGCCCTCAATCTACGGTA 58.963 52.381 0.00 0.00 0.00 4.02
1584 1796 2.745515 ACCTTACCAAACTCGAGAGC 57.254 50.000 21.68 0.00 0.00 4.09
1650 1862 2.956132 TGGCTTTGGAATTTGACAGGA 58.044 42.857 0.00 0.00 0.00 3.86
1680 1892 1.209019 CTCTACCTTGCCAGCACTCAT 59.791 52.381 0.00 0.00 0.00 2.90
1785 2000 6.059787 AGGATGACTACAAGCTTCAGAAAT 57.940 37.500 10.82 4.68 0.00 2.17
1807 2022 3.708121 TCTATGCAATCTGAGAAGCCTGA 59.292 43.478 7.62 1.85 0.00 3.86
1812 2027 3.269178 CAATCTGAGAAGCCTGAACCTC 58.731 50.000 0.00 0.00 0.00 3.85
1813 2028 1.270907 TCTGAGAAGCCTGAACCTCC 58.729 55.000 0.00 0.00 0.00 4.30
1814 2029 1.203237 TCTGAGAAGCCTGAACCTCCT 60.203 52.381 0.00 0.00 0.00 3.69
1823 2038 2.716217 CCTGAACCTCCTTTCATGTCC 58.284 52.381 0.00 0.00 34.96 4.02
1903 2118 1.202989 TGCAGGAGTTACATTTGGGCA 60.203 47.619 0.00 0.00 0.00 5.36
1907 2122 3.057315 CAGGAGTTACATTTGGGCAACAG 60.057 47.826 0.00 0.00 39.74 3.16
1909 2124 1.269448 AGTTACATTTGGGCAACAGCG 59.731 47.619 0.00 0.00 39.74 5.18
1957 2172 2.638480 AGCACACTTGACCAGCTTAA 57.362 45.000 0.00 0.00 29.98 1.85
1974 2189 3.371285 GCTTAACCGTTCTTGACATCTCC 59.629 47.826 0.00 0.00 0.00 3.71
2107 2322 4.202010 GCATGCTTGGTAATTTGACCGTAT 60.202 41.667 11.37 0.00 42.99 3.06
2108 2323 5.678616 GCATGCTTGGTAATTTGACCGTATT 60.679 40.000 11.37 0.00 42.99 1.89
2109 2324 5.303747 TGCTTGGTAATTTGACCGTATTG 57.696 39.130 0.00 0.00 42.99 1.90
2110 2325 4.156922 TGCTTGGTAATTTGACCGTATTGG 59.843 41.667 0.00 0.00 42.99 3.16
2111 2326 4.396790 GCTTGGTAATTTGACCGTATTGGA 59.603 41.667 0.00 0.00 42.99 3.53
2112 2327 5.106078 GCTTGGTAATTTGACCGTATTGGAA 60.106 40.000 0.00 0.00 42.99 3.53
2113 2328 5.883503 TGGTAATTTGACCGTATTGGAAC 57.116 39.130 0.00 0.00 42.99 3.62
2114 2329 5.562635 TGGTAATTTGACCGTATTGGAACT 58.437 37.500 0.00 0.00 42.99 3.01
2115 2330 6.005198 TGGTAATTTGACCGTATTGGAACTT 58.995 36.000 0.00 0.00 42.99 2.66
2116 2331 6.072397 TGGTAATTTGACCGTATTGGAACTTG 60.072 38.462 0.00 0.00 42.99 3.16
2117 2332 5.385509 AATTTGACCGTATTGGAACTTGG 57.614 39.130 0.00 0.00 42.00 3.61
2118 2333 3.773418 TTGACCGTATTGGAACTTGGA 57.227 42.857 0.00 0.00 42.00 3.53
2119 2334 3.328382 TGACCGTATTGGAACTTGGAG 57.672 47.619 0.00 0.00 42.00 3.86
2120 2335 2.027561 TGACCGTATTGGAACTTGGAGG 60.028 50.000 0.00 0.00 42.00 4.30
2121 2336 1.339727 ACCGTATTGGAACTTGGAGGC 60.340 52.381 0.00 0.00 42.00 4.70
2122 2337 1.339631 CCGTATTGGAACTTGGAGGCA 60.340 52.381 0.00 0.00 42.00 4.75
2123 2338 2.432444 CGTATTGGAACTTGGAGGCAA 58.568 47.619 0.00 0.00 0.00 4.52
2124 2339 2.161609 CGTATTGGAACTTGGAGGCAAC 59.838 50.000 0.00 0.00 0.00 4.17
2125 2340 2.380064 ATTGGAACTTGGAGGCAACA 57.620 45.000 0.00 0.00 41.41 3.33
2126 2341 2.151502 TTGGAACTTGGAGGCAACAA 57.848 45.000 0.00 0.00 41.41 2.83
2127 2342 2.380064 TGGAACTTGGAGGCAACAAT 57.620 45.000 0.00 0.00 41.41 2.71
2128 2343 2.238521 TGGAACTTGGAGGCAACAATC 58.761 47.619 0.00 0.00 41.41 2.67
2129 2344 2.158475 TGGAACTTGGAGGCAACAATCT 60.158 45.455 0.00 0.00 41.41 2.40
2130 2345 2.489722 GGAACTTGGAGGCAACAATCTC 59.510 50.000 0.00 0.00 41.41 2.75
2131 2346 2.957402 ACTTGGAGGCAACAATCTCA 57.043 45.000 0.00 0.00 41.41 3.27
2132 2347 2.787994 ACTTGGAGGCAACAATCTCAG 58.212 47.619 0.00 0.00 41.41 3.35
2133 2348 1.471684 CTTGGAGGCAACAATCTCAGC 59.528 52.381 0.00 0.00 41.41 4.26
2134 2349 0.674581 TGGAGGCAACAATCTCAGCG 60.675 55.000 0.00 0.00 41.41 5.18
2135 2350 1.372087 GGAGGCAACAATCTCAGCGG 61.372 60.000 0.00 0.00 41.41 5.52
2136 2351 1.372087 GAGGCAACAATCTCAGCGGG 61.372 60.000 0.00 0.00 41.41 6.13
2137 2352 2.486966 GCAACAATCTCAGCGGGC 59.513 61.111 0.00 0.00 0.00 6.13
2138 2353 2.334946 GCAACAATCTCAGCGGGCA 61.335 57.895 0.00 0.00 0.00 5.36
2139 2354 1.660560 GCAACAATCTCAGCGGGCAT 61.661 55.000 0.00 0.00 0.00 4.40
2140 2355 0.099968 CAACAATCTCAGCGGGCATG 59.900 55.000 0.00 0.00 0.00 4.06
2141 2356 0.322816 AACAATCTCAGCGGGCATGT 60.323 50.000 0.00 0.00 0.00 3.21
2142 2357 1.028330 ACAATCTCAGCGGGCATGTG 61.028 55.000 0.00 0.00 0.00 3.21
2143 2358 2.117156 AATCTCAGCGGGCATGTGC 61.117 57.895 0.00 0.00 41.14 4.57
2155 2370 0.306840 GCATGTGCCATCTGACATCG 59.693 55.000 0.00 0.00 30.14 3.84
2156 2371 0.942252 CATGTGCCATCTGACATCGG 59.058 55.000 0.00 0.00 30.14 4.18
2157 2372 0.543277 ATGTGCCATCTGACATCGGT 59.457 50.000 0.00 0.00 0.00 4.69
2158 2373 1.190643 TGTGCCATCTGACATCGGTA 58.809 50.000 0.00 0.00 0.00 4.02
2159 2374 1.762370 TGTGCCATCTGACATCGGTAT 59.238 47.619 0.00 0.00 0.00 2.73
2160 2375 2.138320 GTGCCATCTGACATCGGTATG 58.862 52.381 0.00 0.00 39.17 2.39
2161 2376 1.151668 GCCATCTGACATCGGTATGC 58.848 55.000 0.00 0.00 36.50 3.14
2162 2377 1.270518 GCCATCTGACATCGGTATGCT 60.271 52.381 0.00 0.00 36.50 3.79
2163 2378 2.808202 GCCATCTGACATCGGTATGCTT 60.808 50.000 0.00 0.00 36.50 3.91
2164 2379 2.804527 CCATCTGACATCGGTATGCTTG 59.195 50.000 0.00 0.00 36.50 4.01
2165 2380 2.602257 TCTGACATCGGTATGCTTGG 57.398 50.000 0.00 0.00 36.50 3.61
2166 2381 1.138859 TCTGACATCGGTATGCTTGGG 59.861 52.381 0.00 0.00 36.50 4.12
2167 2382 1.138859 CTGACATCGGTATGCTTGGGA 59.861 52.381 0.00 0.00 36.50 4.37
2168 2383 1.557371 TGACATCGGTATGCTTGGGAA 59.443 47.619 0.00 0.00 36.50 3.97
2169 2384 2.172505 TGACATCGGTATGCTTGGGAAT 59.827 45.455 0.00 0.00 36.50 3.01
2170 2385 3.214328 GACATCGGTATGCTTGGGAATT 58.786 45.455 0.00 0.00 36.50 2.17
2171 2386 3.631250 ACATCGGTATGCTTGGGAATTT 58.369 40.909 0.00 0.00 36.50 1.82
2172 2387 3.381272 ACATCGGTATGCTTGGGAATTTG 59.619 43.478 0.00 0.00 36.50 2.32
2173 2388 3.358111 TCGGTATGCTTGGGAATTTGA 57.642 42.857 0.00 0.00 0.00 2.69
2174 2389 3.013921 TCGGTATGCTTGGGAATTTGAC 58.986 45.455 0.00 0.00 0.00 3.18
2175 2390 2.099098 CGGTATGCTTGGGAATTTGACC 59.901 50.000 0.00 0.00 0.00 4.02
2176 2391 3.096092 GGTATGCTTGGGAATTTGACCA 58.904 45.455 0.00 0.00 34.29 4.02
2177 2392 3.706086 GGTATGCTTGGGAATTTGACCAT 59.294 43.478 0.00 0.00 36.48 3.55
2178 2393 3.899052 ATGCTTGGGAATTTGACCATG 57.101 42.857 0.00 0.00 36.48 3.66
2236 2523 6.238648 CCTCACCGAAGAACATTTTACAAGTT 60.239 38.462 0.00 0.00 0.00 2.66
2248 2535 9.940166 AACATTTTACAAGTTTAACGAGGTTAG 57.060 29.630 0.00 0.00 29.41 2.34
2337 2624 7.509546 TCAGTTTAGAAGAAACAGATCTTGGT 58.490 34.615 0.00 0.00 39.70 3.67
2387 2674 0.178992 TGGCTTCAGTTCCAAGTGGG 60.179 55.000 0.00 0.00 35.41 4.61
2393 2681 1.425066 TCAGTTCCAAGTGGGCATTCT 59.575 47.619 0.00 0.00 36.21 2.40
2396 2684 2.087646 GTTCCAAGTGGGCATTCTCTC 58.912 52.381 0.00 0.00 36.21 3.20
2402 2691 0.533755 GTGGGCATTCTCTCGATGGG 60.534 60.000 0.00 0.00 0.00 4.00
2424 2713 6.014584 TGGGTATATCAAGCACAGGTATAGTG 60.015 42.308 0.00 0.00 39.92 2.74
2469 2758 3.324556 ACACTACATTTGCAAAGGCCATT 59.675 39.130 22.79 6.82 40.13 3.16
2471 2760 4.389687 CACTACATTTGCAAAGGCCATTTC 59.610 41.667 22.79 0.00 40.13 2.17
2484 2773 2.092753 GGCCATTTCTCTGGACATCTCA 60.093 50.000 0.00 0.00 44.44 3.27
2498 2787 7.231115 TCTGGACATCTCAAACAATGAAATCAA 59.769 33.333 0.00 0.00 37.67 2.57
2545 2834 7.093858 TGGAATTCATGTCACTGCAATATTTCA 60.094 33.333 7.93 0.00 0.00 2.69
2582 2871 5.784578 AAACTAACTGGTGAAATCCCAAC 57.215 39.130 0.00 0.00 0.00 3.77
2603 2892 8.276477 CCCAACCTTACCAAGAAATATTACCTA 58.724 37.037 0.00 0.00 0.00 3.08
2605 2894 8.823818 CAACCTTACCAAGAAATATTACCTACG 58.176 37.037 0.00 0.00 0.00 3.51
2617 2906 4.650754 ATTACCTACGTGGACATGTCTC 57.349 45.455 24.50 15.19 39.71 3.36
2625 2914 2.480419 CGTGGACATGTCTCAAAACTCC 59.520 50.000 24.50 6.64 0.00 3.85
2652 2941 5.481105 TCTGGAAATTTGCCATCAAACATC 58.519 37.500 7.27 0.00 44.11 3.06
2700 2989 4.458989 GTGCTGGTCTCCAATCAAATAACA 59.541 41.667 0.00 0.00 30.80 2.41
2748 3038 1.615392 GTGAAGCCTTGAATGCCTTGT 59.385 47.619 0.00 0.00 0.00 3.16
2792 3082 1.871676 GGACAACTTCCTCGGTGTTTC 59.128 52.381 0.00 0.00 41.95 2.78
2794 3084 1.137479 ACAACTTCCTCGGTGTTTCGA 59.863 47.619 0.00 0.00 37.60 3.71
2802 3092 0.599204 TCGGTGTTTCGAGGTGAAGC 60.599 55.000 0.00 0.00 37.99 3.86
2892 6406 5.189180 GTGGACAATTGAAGGCTCTAGATT 58.811 41.667 13.59 0.00 0.00 2.40
2894 6408 5.649395 TGGACAATTGAAGGCTCTAGATTTG 59.351 40.000 13.59 0.00 0.00 2.32
2917 6431 7.789273 TGTCACGTAATAGTTTTTCTGGAAA 57.211 32.000 0.00 0.00 0.00 3.13
2977 6491 5.455056 TTTTTGCGGCTAAACCAGAATAA 57.545 34.783 9.05 0.00 39.03 1.40
3016 6530 4.272489 CCAGCCACCATCTCAAATCTTAA 58.728 43.478 0.00 0.00 0.00 1.85
3044 6558 1.833630 CACCATCTGAACCTAGCAGGA 59.166 52.381 8.91 0.00 37.67 3.86
3049 6563 4.384537 CCATCTGAACCTAGCAGGAAATGA 60.385 45.833 8.91 3.39 37.67 2.57
3056 6570 6.156949 TGAACCTAGCAGGAAATGACTTATCT 59.843 38.462 8.91 0.00 37.67 1.98
3059 6573 3.549794 AGCAGGAAATGACTTATCTGGC 58.450 45.455 0.00 0.00 0.00 4.85
3061 6575 2.874701 CAGGAAATGACTTATCTGGCGG 59.125 50.000 0.00 0.00 0.00 6.13
3078 6592 1.963338 GGCATACCGAGGCATCTGC 60.963 63.158 2.05 2.05 41.14 4.26
3132 6667 4.460948 TCAGAACCTATTGACGGTTACC 57.539 45.455 0.00 0.00 44.41 2.85
3137 6672 3.175594 ACCTATTGACGGTTACCCAGAA 58.824 45.455 0.00 0.00 0.00 3.02
3140 6675 5.426185 ACCTATTGACGGTTACCCAGAAATA 59.574 40.000 0.00 0.00 0.00 1.40
3245 6780 6.583806 GCATTGACTTATCTTTCAACCAACTG 59.416 38.462 0.00 0.00 34.61 3.16
3246 6781 7.651808 CATTGACTTATCTTTCAACCAACTGT 58.348 34.615 0.00 0.00 34.61 3.55
3259 6794 3.521727 ACCAACTGTCTGGGAGAATACT 58.478 45.455 11.77 0.00 41.16 2.12
3267 6802 7.129425 ACTGTCTGGGAGAATACTAGAAGAAT 58.871 38.462 0.00 0.00 0.00 2.40
3308 6843 7.466455 GCGTTGATGAACTTGAATCTATCATGT 60.466 37.037 0.00 0.00 45.48 3.21
3314 6849 8.492673 TGAACTTGAATCTATCATGTAACCAC 57.507 34.615 0.00 0.00 43.48 4.16
3477 7012 5.990668 ACAATCTAACAGGGAGAATACCAC 58.009 41.667 0.00 0.00 0.00 4.16
3517 7052 1.073923 CCTCTACACCCAGCAACCTTT 59.926 52.381 0.00 0.00 0.00 3.11
3680 7215 6.011096 TGGGATTTATTCTAGGTCTTTGGGTT 60.011 38.462 0.00 0.00 0.00 4.11
3693 7228 2.064434 TTGGGTTGTGTTCTGCATCA 57.936 45.000 0.00 0.00 0.00 3.07
3699 7234 2.710220 TGTGTTCTGCATCATGTTGC 57.290 45.000 19.71 19.71 43.07 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.859427 CACACAAGGAACATCATACAAATATTT 57.141 29.630 0.00 0.00 0.00 1.40
10 11 7.975616 GCACACAAGGAACATCATACAAATATT 59.024 33.333 0.00 0.00 0.00 1.28
11 12 7.122501 TGCACACAAGGAACATCATACAAATAT 59.877 33.333 0.00 0.00 0.00 1.28
12 13 6.432472 TGCACACAAGGAACATCATACAAATA 59.568 34.615 0.00 0.00 0.00 1.40
13 14 5.243507 TGCACACAAGGAACATCATACAAAT 59.756 36.000 0.00 0.00 0.00 2.32
14 15 4.582240 TGCACACAAGGAACATCATACAAA 59.418 37.500 0.00 0.00 0.00 2.83
15 16 4.140536 TGCACACAAGGAACATCATACAA 58.859 39.130 0.00 0.00 0.00 2.41
16 17 3.749226 TGCACACAAGGAACATCATACA 58.251 40.909 0.00 0.00 0.00 2.29
17 18 4.395854 TCATGCACACAAGGAACATCATAC 59.604 41.667 0.00 0.00 0.00 2.39
18 19 4.587891 TCATGCACACAAGGAACATCATA 58.412 39.130 0.00 0.00 0.00 2.15
19 20 3.423749 TCATGCACACAAGGAACATCAT 58.576 40.909 0.00 0.00 0.00 2.45
20 21 2.861274 TCATGCACACAAGGAACATCA 58.139 42.857 0.00 0.00 0.00 3.07
21 22 5.762825 ATATCATGCACACAAGGAACATC 57.237 39.130 0.00 0.00 0.00 3.06
22 23 5.419788 ACAATATCATGCACACAAGGAACAT 59.580 36.000 0.00 0.00 0.00 2.71
23 24 4.766373 ACAATATCATGCACACAAGGAACA 59.234 37.500 0.00 0.00 0.00 3.18
24 25 5.097529 CACAATATCATGCACACAAGGAAC 58.902 41.667 0.00 0.00 0.00 3.62
25 26 5.008980 TCACAATATCATGCACACAAGGAA 58.991 37.500 0.00 0.00 0.00 3.36
26 27 4.587891 TCACAATATCATGCACACAAGGA 58.412 39.130 0.00 0.00 0.00 3.36
27 28 4.968812 TCACAATATCATGCACACAAGG 57.031 40.909 0.00 0.00 0.00 3.61
28 29 7.922837 TCTTATCACAATATCATGCACACAAG 58.077 34.615 0.00 0.00 0.00 3.16
29 30 7.862512 TCTTATCACAATATCATGCACACAA 57.137 32.000 0.00 0.00 0.00 3.33
30 31 7.862512 TTCTTATCACAATATCATGCACACA 57.137 32.000 0.00 0.00 0.00 3.72
73 74 7.485913 GCGAGAATTGACAACATTTGTATTGAT 59.514 33.333 0.00 0.00 45.52 2.57
74 75 6.801377 GCGAGAATTGACAACATTTGTATTGA 59.199 34.615 0.00 0.00 45.52 2.57
77 78 5.415701 AGGCGAGAATTGACAACATTTGTAT 59.584 36.000 0.00 0.00 45.52 2.29
84 85 2.151202 GGAAGGCGAGAATTGACAACA 58.849 47.619 0.00 0.00 0.00 3.33
85 86 1.468914 GGGAAGGCGAGAATTGACAAC 59.531 52.381 0.00 0.00 0.00 3.32
87 88 0.690192 TGGGAAGGCGAGAATTGACA 59.310 50.000 0.00 0.00 0.00 3.58
92 93 3.019564 CAAGATTTGGGAAGGCGAGAAT 58.980 45.455 0.00 0.00 0.00 2.40
97 98 3.056607 ACATTTCAAGATTTGGGAAGGCG 60.057 43.478 0.00 0.00 0.00 5.52
105 106 7.678947 AGAGTACTGGACATTTCAAGATTTG 57.321 36.000 0.00 0.00 0.00 2.32
142 143 2.943345 GAGCGTGCGTGTTCACCTG 61.943 63.158 0.00 0.00 33.57 4.00
143 144 2.661866 GAGCGTGCGTGTTCACCT 60.662 61.111 0.00 0.00 33.57 4.00
144 145 2.658707 GAGAGCGTGCGTGTTCACC 61.659 63.158 0.00 0.00 33.57 4.02
146 147 2.355837 GGAGAGCGTGCGTGTTCA 60.356 61.111 0.00 0.00 0.00 3.18
147 148 3.112709 GGGAGAGCGTGCGTGTTC 61.113 66.667 0.00 0.00 0.00 3.18
148 149 3.575351 GAGGGAGAGCGTGCGTGTT 62.575 63.158 0.00 0.00 0.00 3.32
153 154 4.500116 GACGGAGGGAGAGCGTGC 62.500 72.222 0.00 0.00 0.00 5.34
157 158 4.816984 TCCGGACGGAGGGAGAGC 62.817 72.222 9.76 0.00 39.76 4.09
158 159 1.043673 AATTCCGGACGGAGGGAGAG 61.044 60.000 13.64 0.00 46.06 3.20
159 160 0.259647 TAATTCCGGACGGAGGGAGA 59.740 55.000 13.64 0.00 46.06 3.71
160 161 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
161 162 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
162 163 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
163 164 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
164 165 2.537401 GACAAGTAATTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
165 166 1.135315 CGACAAGTAATTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
166 167 1.274596 CGACAAGTAATTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
167 168 0.643820 GCGACAAGTAATTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
168 169 1.659098 CTGCGACAAGTAATTCCGGAC 59.341 52.381 1.83 0.00 0.00 4.79
169 170 1.546923 TCTGCGACAAGTAATTCCGGA 59.453 47.619 0.00 0.00 0.00 5.14
170 171 2.004583 TCTGCGACAAGTAATTCCGG 57.995 50.000 0.00 0.00 0.00 5.14
171 172 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
172 173 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
173 174 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
174 175 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
175 176 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
177 178 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
179 180 4.024556 GGATACATCCATTTCTGCGACAAG 60.025 45.833 3.26 0.00 46.38 3.16
180 181 3.876914 GGATACATCCATTTCTGCGACAA 59.123 43.478 3.26 0.00 46.38 3.18
198 199 6.238566 CCGAGTTACTTGTCGTAGAATGGATA 60.239 42.308 0.00 0.00 39.69 2.59
199 200 5.450137 CCGAGTTACTTGTCGTAGAATGGAT 60.450 44.000 0.00 0.00 39.69 3.41
200 201 4.142534 CCGAGTTACTTGTCGTAGAATGGA 60.143 45.833 0.00 0.00 39.69 3.41
201 202 4.103357 CCGAGTTACTTGTCGTAGAATGG 58.897 47.826 0.00 0.00 39.69 3.16
202 203 4.103357 CCCGAGTTACTTGTCGTAGAATG 58.897 47.826 0.00 0.00 39.69 2.67
203 204 4.012374 TCCCGAGTTACTTGTCGTAGAAT 58.988 43.478 0.00 0.00 39.69 2.40
204 205 3.411446 TCCCGAGTTACTTGTCGTAGAA 58.589 45.455 0.00 0.00 39.69 2.10
206 207 3.488721 CCATCCCGAGTTACTTGTCGTAG 60.489 52.174 0.00 0.00 34.27 3.51
207 208 2.424601 CCATCCCGAGTTACTTGTCGTA 59.575 50.000 0.00 0.00 34.27 3.43
208 209 1.203994 CCATCCCGAGTTACTTGTCGT 59.796 52.381 0.00 0.00 34.27 4.34
209 210 1.475280 TCCATCCCGAGTTACTTGTCG 59.525 52.381 0.00 0.00 35.91 4.35
210 211 2.159085 CCTCCATCCCGAGTTACTTGTC 60.159 54.545 0.00 0.00 0.00 3.18
213 214 1.007963 TCCCTCCATCCCGAGTTACTT 59.992 52.381 0.00 0.00 0.00 2.24
214 215 0.635009 TCCCTCCATCCCGAGTTACT 59.365 55.000 0.00 0.00 0.00 2.24
215 216 1.041437 CTCCCTCCATCCCGAGTTAC 58.959 60.000 0.00 0.00 0.00 2.50
218 219 0.186386 CTACTCCCTCCATCCCGAGT 59.814 60.000 0.00 0.00 38.97 4.18
219 220 0.478942 TCTACTCCCTCCATCCCGAG 59.521 60.000 0.00 0.00 0.00 4.63
220 221 0.931468 TTCTACTCCCTCCATCCCGA 59.069 55.000 0.00 0.00 0.00 5.14
221 222 2.016905 ATTCTACTCCCTCCATCCCG 57.983 55.000 0.00 0.00 0.00 5.14
222 223 7.757242 ATTAATATTCTACTCCCTCCATCCC 57.243 40.000 0.00 0.00 0.00 3.85
226 227 8.548877 GGCAATATTAATATTCTACTCCCTCCA 58.451 37.037 16.25 0.00 30.91 3.86
227 228 7.711339 CGGCAATATTAATATTCTACTCCCTCC 59.289 40.741 16.25 7.09 30.91 4.30
228 229 8.258708 ACGGCAATATTAATATTCTACTCCCTC 58.741 37.037 16.25 0.82 30.91 4.30
229 230 8.041323 CACGGCAATATTAATATTCTACTCCCT 58.959 37.037 16.25 3.17 30.91 4.20
230 231 8.038944 TCACGGCAATATTAATATTCTACTCCC 58.961 37.037 16.25 9.70 30.91 4.30
231 232 8.997621 TCACGGCAATATTAATATTCTACTCC 57.002 34.615 16.25 11.55 30.91 3.85
247 248 4.097892 GGGAACTTTAATCATCACGGCAAT 59.902 41.667 0.00 0.00 0.00 3.56
302 334 7.567250 TGGTCAGGAGTTCCATTAGTATATTGA 59.433 37.037 0.28 0.00 38.89 2.57
303 335 7.735917 TGGTCAGGAGTTCCATTAGTATATTG 58.264 38.462 0.28 0.00 38.89 1.90
304 336 7.569111 ACTGGTCAGGAGTTCCATTAGTATATT 59.431 37.037 0.28 0.00 38.89 1.28
305 337 7.076446 ACTGGTCAGGAGTTCCATTAGTATAT 58.924 38.462 0.28 0.00 38.89 0.86
308 340 4.684724 ACTGGTCAGGAGTTCCATTAGTA 58.315 43.478 0.28 0.00 38.89 1.82
309 341 3.521727 ACTGGTCAGGAGTTCCATTAGT 58.478 45.455 0.28 0.00 38.89 2.24
310 342 4.559862 AACTGGTCAGGAGTTCCATTAG 57.440 45.455 0.28 0.00 38.89 1.73
311 343 4.993705 AAACTGGTCAGGAGTTCCATTA 57.006 40.909 0.28 0.00 38.89 1.90
312 344 3.884037 AAACTGGTCAGGAGTTCCATT 57.116 42.857 0.28 0.00 38.89 3.16
313 345 3.117512 ACAAAACTGGTCAGGAGTTCCAT 60.118 43.478 0.28 0.00 38.89 3.41
314 346 2.241176 ACAAAACTGGTCAGGAGTTCCA 59.759 45.455 0.28 0.00 38.89 3.53
315 347 2.932261 ACAAAACTGGTCAGGAGTTCC 58.068 47.619 2.87 0.00 32.33 3.62
316 348 4.200092 AGAACAAAACTGGTCAGGAGTTC 58.800 43.478 13.71 13.71 32.33 3.01
317 349 4.200092 GAGAACAAAACTGGTCAGGAGTT 58.800 43.478 2.87 2.04 35.08 3.01
318 350 3.433740 GGAGAACAAAACTGGTCAGGAGT 60.434 47.826 2.87 0.00 0.00 3.85
319 351 3.142174 GGAGAACAAAACTGGTCAGGAG 58.858 50.000 2.87 0.00 0.00 3.69
321 353 3.142174 GAGGAGAACAAAACTGGTCAGG 58.858 50.000 2.87 0.00 0.00 3.86
323 355 3.924114 TGAGGAGAACAAAACTGGTCA 57.076 42.857 0.00 0.00 0.00 4.02
324 356 4.083802 CGATTGAGGAGAACAAAACTGGTC 60.084 45.833 0.00 0.00 0.00 4.02
341 373 0.824109 CAGGCCAGGTACTCGATTGA 59.176 55.000 5.01 0.00 34.60 2.57
342 374 0.537188 ACAGGCCAGGTACTCGATTG 59.463 55.000 5.01 0.00 34.60 2.67
343 375 1.276622 AACAGGCCAGGTACTCGATT 58.723 50.000 5.01 0.00 34.60 3.34
344 376 1.276622 AAACAGGCCAGGTACTCGAT 58.723 50.000 5.01 0.00 34.60 3.59
345 377 1.053424 AAAACAGGCCAGGTACTCGA 58.947 50.000 5.01 0.00 34.60 4.04
346 378 1.156736 CAAAACAGGCCAGGTACTCG 58.843 55.000 5.01 0.00 34.60 4.18
347 379 2.271944 ACAAAACAGGCCAGGTACTC 57.728 50.000 5.01 0.00 34.60 2.59
348 380 2.092103 TGAACAAAACAGGCCAGGTACT 60.092 45.455 5.01 0.00 43.88 2.73
349 381 2.293399 CTGAACAAAACAGGCCAGGTAC 59.707 50.000 5.01 0.00 0.00 3.34
350 382 2.582052 CTGAACAAAACAGGCCAGGTA 58.418 47.619 5.01 0.00 0.00 3.08
351 383 1.402787 CTGAACAAAACAGGCCAGGT 58.597 50.000 5.01 0.00 0.00 4.00
352 384 0.032540 GCTGAACAAAACAGGCCAGG 59.967 55.000 5.01 0.00 36.09 4.45
353 385 1.000938 GAGCTGAACAAAACAGGCCAG 60.001 52.381 5.01 0.00 36.09 4.85
354 386 1.032014 GAGCTGAACAAAACAGGCCA 58.968 50.000 5.01 0.00 36.09 5.36
355 387 1.032014 TGAGCTGAACAAAACAGGCC 58.968 50.000 0.00 0.00 36.09 5.19
356 388 2.294233 TGATGAGCTGAACAAAACAGGC 59.706 45.455 0.00 0.00 36.09 4.85
357 389 4.482386 CATGATGAGCTGAACAAAACAGG 58.518 43.478 0.00 0.00 36.09 4.00
358 390 4.216902 TCCATGATGAGCTGAACAAAACAG 59.783 41.667 0.00 0.00 38.27 3.16
359 391 4.143543 TCCATGATGAGCTGAACAAAACA 58.856 39.130 0.00 0.00 0.00 2.83
360 392 4.771590 TCCATGATGAGCTGAACAAAAC 57.228 40.909 0.00 0.00 0.00 2.43
361 393 5.011586 TCATCCATGATGAGCTGAACAAAA 58.988 37.500 0.00 0.00 43.11 2.44
362 394 4.591929 TCATCCATGATGAGCTGAACAAA 58.408 39.130 0.00 0.00 43.11 2.83
363 395 4.224991 TCATCCATGATGAGCTGAACAA 57.775 40.909 0.00 0.00 43.11 2.83
364 396 3.918294 TCATCCATGATGAGCTGAACA 57.082 42.857 0.00 0.00 43.11 3.18
372 404 3.686405 GCAAGGAGGTTCATCCATGATGA 60.686 47.826 11.87 2.73 45.78 2.92
373 405 2.621998 GCAAGGAGGTTCATCCATGATG 59.378 50.000 11.87 0.00 39.85 3.07
374 406 2.423947 GGCAAGGAGGTTCATCCATGAT 60.424 50.000 11.87 0.00 39.85 2.45
375 407 1.064463 GGCAAGGAGGTTCATCCATGA 60.064 52.381 11.87 0.00 39.85 3.07
376 408 1.064166 AGGCAAGGAGGTTCATCCATG 60.064 52.381 6.29 5.44 42.26 3.66
377 409 1.302907 AGGCAAGGAGGTTCATCCAT 58.697 50.000 6.29 0.00 42.26 3.41
378 410 1.075601 AAGGCAAGGAGGTTCATCCA 58.924 50.000 6.29 0.00 42.26 3.41
379 411 1.821136 CAAAGGCAAGGAGGTTCATCC 59.179 52.381 0.00 0.00 39.89 3.51
380 412 1.821136 CCAAAGGCAAGGAGGTTCATC 59.179 52.381 0.00 0.00 0.00 2.92
381 413 1.428912 TCCAAAGGCAAGGAGGTTCAT 59.571 47.619 0.00 0.00 0.00 2.57
382 414 0.850100 TCCAAAGGCAAGGAGGTTCA 59.150 50.000 0.00 0.00 0.00 3.18
383 415 2.222227 ATCCAAAGGCAAGGAGGTTC 57.778 50.000 0.00 0.00 37.34 3.62
384 416 3.269381 TGATATCCAAAGGCAAGGAGGTT 59.731 43.478 0.00 0.00 37.34 3.50
385 417 2.852449 TGATATCCAAAGGCAAGGAGGT 59.148 45.455 0.00 0.00 37.34 3.85
386 418 3.582998 TGATATCCAAAGGCAAGGAGG 57.417 47.619 0.00 0.00 37.34 4.30
392 424 3.363627 TGTGCAATGATATCCAAAGGCA 58.636 40.909 0.00 0.75 0.00 4.75
399 431 2.035066 GCAGGGTTGTGCAATGATATCC 59.965 50.000 0.00 0.00 43.41 2.59
400 432 2.287188 CGCAGGGTTGTGCAATGATATC 60.287 50.000 0.00 0.00 44.21 1.63
401 433 1.677576 CGCAGGGTTGTGCAATGATAT 59.322 47.619 0.00 0.00 44.21 1.63
402 434 1.093972 CGCAGGGTTGTGCAATGATA 58.906 50.000 0.00 0.00 44.21 2.15
421 453 5.004922 TGACAAAAACACTGGTGATTTCC 57.995 39.130 7.78 3.18 35.05 3.13
427 459 3.367630 GCACTTTGACAAAAACACTGGTG 59.632 43.478 1.62 6.05 0.00 4.17
428 460 3.006323 TGCACTTTGACAAAAACACTGGT 59.994 39.130 1.62 0.00 0.00 4.00
429 461 3.583806 TGCACTTTGACAAAAACACTGG 58.416 40.909 1.62 0.00 0.00 4.00
430 462 3.061161 GCTGCACTTTGACAAAAACACTG 59.939 43.478 1.62 0.00 0.00 3.66
431 463 3.253230 GCTGCACTTTGACAAAAACACT 58.747 40.909 1.62 0.00 0.00 3.55
432 464 2.348362 GGCTGCACTTTGACAAAAACAC 59.652 45.455 0.50 0.00 0.00 3.32
433 465 2.615869 GGCTGCACTTTGACAAAAACA 58.384 42.857 0.50 0.26 0.00 2.83
434 466 1.933181 GGGCTGCACTTTGACAAAAAC 59.067 47.619 0.50 0.00 0.00 2.43
435 467 1.470632 CGGGCTGCACTTTGACAAAAA 60.471 47.619 0.00 0.00 0.00 1.94
436 468 0.102120 CGGGCTGCACTTTGACAAAA 59.898 50.000 0.00 0.00 0.00 2.44
437 469 1.732917 CGGGCTGCACTTTGACAAA 59.267 52.632 0.00 0.00 0.00 2.83
438 470 2.192861 CCGGGCTGCACTTTGACAA 61.193 57.895 0.00 0.00 0.00 3.18
439 471 2.594303 CCGGGCTGCACTTTGACA 60.594 61.111 0.00 0.00 0.00 3.58
440 472 2.594592 ACCGGGCTGCACTTTGAC 60.595 61.111 6.32 0.00 0.00 3.18
441 473 2.281484 GACCGGGCTGCACTTTGA 60.281 61.111 6.32 0.00 0.00 2.69
442 474 3.365265 GGACCGGGCTGCACTTTG 61.365 66.667 7.57 0.00 0.00 2.77
443 475 3.570212 AGGACCGGGCTGCACTTT 61.570 61.111 7.57 0.00 0.00 2.66
444 476 4.335647 CAGGACCGGGCTGCACTT 62.336 66.667 7.57 0.00 0.00 3.16
446 478 4.767255 CTCAGGACCGGGCTGCAC 62.767 72.222 7.57 0.00 0.00 4.57
448 480 4.767255 CACTCAGGACCGGGCTGC 62.767 72.222 7.57 0.00 0.00 5.25
449 481 4.087892 CCACTCAGGACCGGGCTG 62.088 72.222 7.57 3.38 41.22 4.85
457 489 3.706373 GAAGCGGGCCACTCAGGA 61.706 66.667 4.39 0.00 41.22 3.86
458 490 4.785453 GGAAGCGGGCCACTCAGG 62.785 72.222 4.39 0.00 41.84 3.86
459 491 4.785453 GGGAAGCGGGCCACTCAG 62.785 72.222 4.39 0.00 0.00 3.35
461 493 4.785453 CTGGGAAGCGGGCCACTC 62.785 72.222 4.39 0.00 0.00 3.51
469 501 0.529992 GTCGTTATCCCTGGGAAGCG 60.530 60.000 21.42 22.11 34.34 4.68
470 502 0.539986 TGTCGTTATCCCTGGGAAGC 59.460 55.000 21.42 11.62 34.34 3.86
475 507 1.338674 TGTTGCTGTCGTTATCCCTGG 60.339 52.381 0.00 0.00 0.00 4.45
476 508 2.093306 TGTTGCTGTCGTTATCCCTG 57.907 50.000 0.00 0.00 0.00 4.45
482 514 3.188159 AGTTCCTTGTTGCTGTCGTTA 57.812 42.857 0.00 0.00 0.00 3.18
484 516 2.902705 TAGTTCCTTGTTGCTGTCGT 57.097 45.000 0.00 0.00 0.00 4.34
486 518 8.045176 AGATAATTTAGTTCCTTGTTGCTGTC 57.955 34.615 0.00 0.00 0.00 3.51
487 519 8.409358 AAGATAATTTAGTTCCTTGTTGCTGT 57.591 30.769 0.00 0.00 0.00 4.40
538 593 2.643933 GCAAGTGAAGAGCCATTTCC 57.356 50.000 0.00 0.00 0.00 3.13
595 686 3.368236 GCCTGAATTCGTCTACTTGTGAC 59.632 47.826 0.04 0.00 0.00 3.67
692 792 2.750237 GATGGCAACCCCGTGACC 60.750 66.667 0.00 0.00 35.87 4.02
698 798 1.218854 GCAATGTGATGGCAACCCC 59.781 57.895 0.00 0.00 0.00 4.95
707 807 2.632377 CTTACTGACCGGCAATGTGAT 58.368 47.619 0.00 0.00 0.00 3.06
730 833 6.994496 CCATGTATTATGACTGAGTCCATGTT 59.006 38.462 18.93 3.18 29.43 2.71
731 834 6.327365 TCCATGTATTATGACTGAGTCCATGT 59.673 38.462 18.93 5.21 29.43 3.21
732 835 6.648310 GTCCATGTATTATGACTGAGTCCATG 59.352 42.308 10.52 13.76 30.43 3.66
733 836 6.556495 AGTCCATGTATTATGACTGAGTCCAT 59.444 38.462 10.52 6.47 0.00 3.41
734 837 5.899547 AGTCCATGTATTATGACTGAGTCCA 59.100 40.000 10.52 0.00 0.00 4.02
735 838 6.412362 AGTCCATGTATTATGACTGAGTCC 57.588 41.667 10.52 0.00 0.00 3.85
736 839 9.817809 TTTTAGTCCATGTATTATGACTGAGTC 57.182 33.333 5.47 5.47 0.00 3.36
740 843 9.669353 GCAATTTTAGTCCATGTATTATGACTG 57.331 33.333 9.50 0.00 0.00 3.51
741 844 9.632638 AGCAATTTTAGTCCATGTATTATGACT 57.367 29.630 5.55 5.55 0.00 3.41
747 850 9.855021 GTTGTAAGCAATTTTAGTCCATGTATT 57.145 29.630 0.00 0.00 36.92 1.89
748 851 9.243105 AGTTGTAAGCAATTTTAGTCCATGTAT 57.757 29.630 0.00 0.00 36.92 2.29
749 852 8.630054 AGTTGTAAGCAATTTTAGTCCATGTA 57.370 30.769 0.00 0.00 36.92 2.29
791 929 0.612174 TTCCTCTCTGTGCCGCTACT 60.612 55.000 0.00 0.00 0.00 2.57
850 990 0.390860 AGGACGCATATGAGCAGGAC 59.609 55.000 6.97 0.00 0.00 3.85
894 1034 2.259818 CCGAGCTGAAGTGCGTCT 59.740 61.111 0.00 0.00 38.13 4.18
1051 1203 1.242076 GTCCAGTTGCTGCACTTGAT 58.758 50.000 0.00 0.00 0.00 2.57
1086 1238 5.292834 CACATGCAGATTACGAAGATGAAGT 59.707 40.000 0.00 0.00 0.00 3.01
1117 1269 3.380637 GTGTCTGTGTAGTACCCATCGAT 59.619 47.826 0.00 0.00 0.00 3.59
1164 1370 4.082571 AGACGATCCATGGAAAGCAAAAAG 60.083 41.667 20.67 5.03 0.00 2.27
1166 1372 3.420893 AGACGATCCATGGAAAGCAAAA 58.579 40.909 20.67 0.00 0.00 2.44
1173 1379 2.107366 TGCACTAGACGATCCATGGAA 58.893 47.619 20.67 1.96 0.00 3.53
1261 1470 8.303876 GGAGAGGTTAAGATATCTCAATCTCAC 58.696 40.741 24.81 19.80 39.97 3.51
1262 1471 7.175816 CGGAGAGGTTAAGATATCTCAATCTCA 59.824 40.741 24.81 0.00 39.97 3.27
1445 1657 5.011635 TCAACTATTGTGCTGAGGTCTACAA 59.988 40.000 0.00 0.00 37.43 2.41
1446 1658 4.526650 TCAACTATTGTGCTGAGGTCTACA 59.473 41.667 0.00 0.00 0.00 2.74
1518 1730 3.335579 GGTTGAAAGAGAGCAATACCGT 58.664 45.455 0.00 0.00 0.00 4.83
1523 1735 1.896220 TGCGGTTGAAAGAGAGCAAT 58.104 45.000 0.00 0.00 0.00 3.56
1584 1796 2.304180 AGTGTTGTGGGAGAGATCAAGG 59.696 50.000 0.00 0.00 0.00 3.61
1597 1809 0.179086 GGGTGGGCAAAAGTGTTGTG 60.179 55.000 0.00 0.00 0.00 3.33
1626 1838 4.443315 CCTGTCAAATTCCAAAGCCAACTT 60.443 41.667 0.00 0.00 37.90 2.66
1633 1845 4.144297 TGGAGTCCTGTCAAATTCCAAAG 58.856 43.478 11.33 0.00 32.15 2.77
1650 1862 1.484240 GCAAGGTAGAGATGCTGGAGT 59.516 52.381 0.00 0.00 37.12 3.85
1680 1892 4.020751 GCATCAGGAGCTTGACCATATAGA 60.021 45.833 0.00 0.00 0.00 1.98
1785 2000 3.708121 TCAGGCTTCTCAGATTGCATAGA 59.292 43.478 0.00 0.00 0.00 1.98
1807 2022 4.739793 TCAATTGGACATGAAAGGAGGTT 58.260 39.130 5.42 0.00 0.00 3.50
1851 2066 0.107945 GACACTGTGGCATCCTCTCC 60.108 60.000 9.20 0.00 0.00 3.71
1853 2068 1.557269 GGGACACTGTGGCATCCTCT 61.557 60.000 16.72 0.00 0.00 3.69
1903 2118 4.330944 TGATTCCGGTAATATCGCTGTT 57.669 40.909 0.00 0.00 0.00 3.16
1907 2122 2.351726 GGCATGATTCCGGTAATATCGC 59.648 50.000 0.00 3.70 0.00 4.58
1957 2172 1.348064 TGGGAGATGTCAAGAACGGT 58.652 50.000 0.00 0.00 0.00 4.83
1974 2189 3.279434 GCCTCCAGTTAGGTTGTTATGG 58.721 50.000 0.00 0.00 39.02 2.74
2107 2322 2.151502 TTGTTGCCTCCAAGTTCCAA 57.848 45.000 0.00 0.00 0.00 3.53
2108 2323 2.158475 AGATTGTTGCCTCCAAGTTCCA 60.158 45.455 0.00 0.00 0.00 3.53
2109 2324 2.489722 GAGATTGTTGCCTCCAAGTTCC 59.510 50.000 0.00 0.00 0.00 3.62
2110 2325 3.149196 TGAGATTGTTGCCTCCAAGTTC 58.851 45.455 0.00 0.00 0.00 3.01
2111 2326 3.152341 CTGAGATTGTTGCCTCCAAGTT 58.848 45.455 0.00 0.00 0.00 2.66
2112 2327 2.787994 CTGAGATTGTTGCCTCCAAGT 58.212 47.619 0.00 0.00 0.00 3.16
2113 2328 1.471684 GCTGAGATTGTTGCCTCCAAG 59.528 52.381 0.00 0.00 0.00 3.61
2114 2329 1.538047 GCTGAGATTGTTGCCTCCAA 58.462 50.000 0.00 0.00 0.00 3.53
2115 2330 0.674581 CGCTGAGATTGTTGCCTCCA 60.675 55.000 0.00 0.00 0.00 3.86
2116 2331 1.372087 CCGCTGAGATTGTTGCCTCC 61.372 60.000 0.00 0.00 0.00 4.30
2117 2332 1.372087 CCCGCTGAGATTGTTGCCTC 61.372 60.000 0.00 0.00 0.00 4.70
2118 2333 1.377725 CCCGCTGAGATTGTTGCCT 60.378 57.895 0.00 0.00 0.00 4.75
2119 2334 3.056313 GCCCGCTGAGATTGTTGCC 62.056 63.158 0.00 0.00 0.00 4.52
2120 2335 1.660560 ATGCCCGCTGAGATTGTTGC 61.661 55.000 0.00 0.00 0.00 4.17
2121 2336 0.099968 CATGCCCGCTGAGATTGTTG 59.900 55.000 0.00 0.00 0.00 3.33
2122 2337 0.322816 ACATGCCCGCTGAGATTGTT 60.323 50.000 0.00 0.00 0.00 2.83
2123 2338 1.028330 CACATGCCCGCTGAGATTGT 61.028 55.000 0.00 0.00 0.00 2.71
2124 2339 1.725665 CACATGCCCGCTGAGATTG 59.274 57.895 0.00 0.00 0.00 2.67
2125 2340 2.117156 GCACATGCCCGCTGAGATT 61.117 57.895 0.00 0.00 34.31 2.40
2126 2341 2.515523 GCACATGCCCGCTGAGAT 60.516 61.111 0.00 0.00 34.31 2.75
2140 2355 2.138320 CATACCGATGTCAGATGGCAC 58.862 52.381 0.00 0.00 29.57 5.01
2141 2356 1.541015 GCATACCGATGTCAGATGGCA 60.541 52.381 0.00 0.00 35.30 4.92
2142 2357 1.151668 GCATACCGATGTCAGATGGC 58.848 55.000 0.00 0.00 35.30 4.40
2143 2358 2.804527 CAAGCATACCGATGTCAGATGG 59.195 50.000 0.00 0.00 35.30 3.51
2144 2359 2.804527 CCAAGCATACCGATGTCAGATG 59.195 50.000 0.00 0.00 35.30 2.90
2145 2360 2.224378 CCCAAGCATACCGATGTCAGAT 60.224 50.000 0.00 0.00 35.30 2.90
2146 2361 1.138859 CCCAAGCATACCGATGTCAGA 59.861 52.381 0.00 0.00 35.30 3.27
2147 2362 1.138859 TCCCAAGCATACCGATGTCAG 59.861 52.381 0.00 0.00 35.30 3.51
2148 2363 1.199615 TCCCAAGCATACCGATGTCA 58.800 50.000 0.00 0.00 35.30 3.58
2149 2364 2.325583 TTCCCAAGCATACCGATGTC 57.674 50.000 0.00 0.00 35.30 3.06
2150 2365 3.297134 AATTCCCAAGCATACCGATGT 57.703 42.857 0.00 0.00 35.30 3.06
2151 2366 3.631686 TCAAATTCCCAAGCATACCGATG 59.368 43.478 0.00 0.00 36.02 3.84
2152 2367 3.632145 GTCAAATTCCCAAGCATACCGAT 59.368 43.478 0.00 0.00 0.00 4.18
2153 2368 3.013921 GTCAAATTCCCAAGCATACCGA 58.986 45.455 0.00 0.00 0.00 4.69
2154 2369 2.099098 GGTCAAATTCCCAAGCATACCG 59.901 50.000 0.00 0.00 0.00 4.02
2155 2370 3.096092 TGGTCAAATTCCCAAGCATACC 58.904 45.455 0.00 0.00 0.00 2.73
2156 2371 4.402155 TCATGGTCAAATTCCCAAGCATAC 59.598 41.667 0.00 0.00 33.66 2.39
2157 2372 4.608269 TCATGGTCAAATTCCCAAGCATA 58.392 39.130 0.00 0.00 33.66 3.14
2158 2373 3.443052 TCATGGTCAAATTCCCAAGCAT 58.557 40.909 0.00 0.00 33.66 3.79
2159 2374 2.886913 TCATGGTCAAATTCCCAAGCA 58.113 42.857 0.00 0.00 33.66 3.91
2160 2375 3.431207 CCATCATGGTCAAATTCCCAAGC 60.431 47.826 0.00 0.00 33.66 4.01
2161 2376 4.025360 TCCATCATGGTCAAATTCCCAAG 58.975 43.478 2.79 0.00 39.03 3.61
2162 2377 4.058417 TCCATCATGGTCAAATTCCCAA 57.942 40.909 2.79 0.00 39.03 4.12
2163 2378 3.754219 TCCATCATGGTCAAATTCCCA 57.246 42.857 2.79 0.00 39.03 4.37
2164 2379 4.477249 AGATCCATCATGGTCAAATTCCC 58.523 43.478 2.79 0.00 39.03 3.97
2165 2380 5.221382 CCAAGATCCATCATGGTCAAATTCC 60.221 44.000 2.79 0.00 39.98 3.01
2166 2381 5.595542 TCCAAGATCCATCATGGTCAAATTC 59.404 40.000 2.79 0.00 43.97 2.17
2167 2382 5.521696 TCCAAGATCCATCATGGTCAAATT 58.478 37.500 2.79 0.00 43.97 1.82
2168 2383 5.133383 TCCAAGATCCATCATGGTCAAAT 57.867 39.130 2.79 0.00 43.97 2.32
2169 2384 4.529897 CTCCAAGATCCATCATGGTCAAA 58.470 43.478 2.79 0.00 43.97 2.69
2170 2385 3.117776 CCTCCAAGATCCATCATGGTCAA 60.118 47.826 2.79 0.00 43.97 3.18
2171 2386 2.440627 CCTCCAAGATCCATCATGGTCA 59.559 50.000 2.79 0.00 43.97 4.02
2172 2387 2.813354 GCCTCCAAGATCCATCATGGTC 60.813 54.545 2.79 0.78 43.97 4.02
2173 2388 1.144503 GCCTCCAAGATCCATCATGGT 59.855 52.381 2.79 0.00 43.97 3.55
2174 2389 1.144298 TGCCTCCAAGATCCATCATGG 59.856 52.381 0.00 0.00 44.71 3.66
2175 2390 2.621998 GTTGCCTCCAAGATCCATCATG 59.378 50.000 0.00 0.00 0.00 3.07
2176 2391 2.242965 TGTTGCCTCCAAGATCCATCAT 59.757 45.455 0.00 0.00 0.00 2.45
2177 2392 1.634973 TGTTGCCTCCAAGATCCATCA 59.365 47.619 0.00 0.00 0.00 3.07
2178 2393 2.425143 TGTTGCCTCCAAGATCCATC 57.575 50.000 0.00 0.00 0.00 3.51
2236 2523 4.592942 TGTAGCTCCTCTAACCTCGTTAA 58.407 43.478 0.00 0.00 0.00 2.01
2248 2535 7.503902 AGAATTCCCATTTAAATGTAGCTCCTC 59.496 37.037 23.24 12.28 34.60 3.71
2393 2681 3.895041 TGTGCTTGATATACCCATCGAGA 59.105 43.478 4.82 0.00 38.31 4.04
2396 2684 3.244215 ACCTGTGCTTGATATACCCATCG 60.244 47.826 0.00 0.00 0.00 3.84
2402 2691 7.228314 TCCACTATACCTGTGCTTGATATAC 57.772 40.000 0.00 0.00 34.38 1.47
2424 2713 1.501582 ACCAGTCAGGAAGCCTATCC 58.498 55.000 0.00 0.00 41.22 2.59
2469 2758 5.868454 TCATTGTTTGAGATGTCCAGAGAA 58.132 37.500 0.00 0.00 0.00 2.87
2471 2760 6.564709 TTTCATTGTTTGAGATGTCCAGAG 57.435 37.500 0.00 0.00 35.27 3.35
2484 2773 3.069443 ACCTGCCGTTGATTTCATTGTTT 59.931 39.130 0.00 0.00 0.00 2.83
2582 2871 7.440255 CCACGTAGGTAATATTTCTTGGTAAGG 59.560 40.741 0.00 0.00 0.00 2.69
2603 2892 3.131396 GAGTTTTGAGACATGTCCACGT 58.869 45.455 22.21 3.38 0.00 4.49
2605 2894 3.744660 AGGAGTTTTGAGACATGTCCAC 58.255 45.455 22.21 16.42 0.00 4.02
2617 2906 6.591448 GGCAAATTTCCAGATAAGGAGTTTTG 59.409 38.462 11.92 11.92 40.55 2.44
2625 2914 7.098477 TGTTTGATGGCAAATTTCCAGATAAG 58.902 34.615 12.76 0.00 45.01 1.73
2652 2941 2.028112 TGAACTCAAATCTGGAGTCCCG 60.028 50.000 6.74 0.00 44.50 5.14
2700 2989 4.526262 CAGAGAGATTCGGGAATATGACCT 59.474 45.833 0.00 0.00 0.00 3.85
2748 3038 7.039882 CCCTCGAAAAGATTGCTACTTAAGTA 58.960 38.462 14.52 14.52 0.00 2.24
2792 3082 1.800805 AGTCAATGTGCTTCACCTCG 58.199 50.000 0.00 0.00 32.73 4.63
2794 3084 3.817647 GAGAAAGTCAATGTGCTTCACCT 59.182 43.478 0.00 0.00 32.73 4.00
2871 6385 5.649831 ACAAATCTAGAGCCTTCAATTGTCC 59.350 40.000 5.13 0.00 0.00 4.02
2892 6406 7.789273 TTCCAGAAAAACTATTACGTGACAA 57.211 32.000 0.00 0.00 0.00 3.18
2894 6408 7.858583 ACTTTCCAGAAAAACTATTACGTGAC 58.141 34.615 0.00 0.00 0.00 3.67
2917 6431 2.173519 CTCCAATCCACAATGGCAACT 58.826 47.619 0.00 0.00 37.47 3.16
2977 6491 2.880167 GCTGGGATTTCTCCGGAAAACT 60.880 50.000 5.23 0.00 43.51 2.66
3016 6530 1.407437 GGTTCAGATGGTGAAGGCGAT 60.407 52.381 0.00 0.00 46.18 4.58
3044 6558 2.418368 TGCCGCCAGATAAGTCATTT 57.582 45.000 0.00 0.00 0.00 2.32
3061 6575 3.647824 GCAGATGCCTCGGTATGC 58.352 61.111 0.00 0.00 34.31 3.14
3078 6592 0.171007 GTCATGGCCGTCACATTTGG 59.829 55.000 0.00 0.00 0.00 3.28
3140 6675 8.109634 ACAGAGGAAAAATCATATGTACCAACT 58.890 33.333 1.90 0.00 0.00 3.16
3212 6747 6.660521 TGAAAGATAAGTCAATGCTCACCAAT 59.339 34.615 0.00 0.00 0.00 3.16
3245 6780 9.138596 ACTAATTCTTCTAGTATTCTCCCAGAC 57.861 37.037 0.00 0.00 0.00 3.51
3246 6781 9.716556 AACTAATTCTTCTAGTATTCTCCCAGA 57.283 33.333 0.00 0.00 0.00 3.86
3259 6794 6.256539 CGCATCAAGAGCAACTAATTCTTCTA 59.743 38.462 0.00 0.00 0.00 2.10
3267 6802 3.398406 TCAACGCATCAAGAGCAACTAA 58.602 40.909 0.00 0.00 0.00 2.24
3334 6869 0.899717 CTGCAAGGCCCCAAGCTTAA 60.900 55.000 0.00 0.00 43.05 1.85
3440 6975 8.037758 CCTGTTAGATTGTTATCAGACAAGTCT 58.962 37.037 0.00 0.00 42.28 3.24
3477 7012 4.268687 GTCAAGCTGACGTCCTGG 57.731 61.111 14.12 1.14 37.67 4.45
3517 7052 3.831333 ACCATTGTTGCCATTGTACATGA 59.169 39.130 0.00 0.00 0.00 3.07
3614 7149 3.091545 GGTCATTGGCTCAAAGGAATGA 58.908 45.455 0.00 0.00 33.46 2.57
3680 7215 2.710220 GCAACATGATGCAGAACACA 57.290 45.000 21.73 0.00 45.70 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.