Multiple sequence alignment - TraesCS4A01G483200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G483200 chr4A 100.000 4027 0 0 269 4295 738349942 738353968 0.000000e+00 7437.0
1 TraesCS4A01G483200 chr4A 86.477 2529 258 33 625 3147 737847210 737844760 0.000000e+00 2699.0
2 TraesCS4A01G483200 chr4A 86.426 2490 299 27 1819 4295 738523995 738521532 0.000000e+00 2689.0
3 TraesCS4A01G483200 chr4A 89.431 2091 191 18 2219 4295 737854196 737852122 0.000000e+00 2610.0
4 TraesCS4A01G483200 chr4A 86.203 1841 236 11 2219 4057 738391479 738389655 0.000000e+00 1977.0
5 TraesCS4A01G483200 chr4A 87.052 1591 177 17 721 2293 738393056 738391477 0.000000e+00 1770.0
6 TraesCS4A01G483200 chr4A 89.962 797 77 2 1301 2097 737855039 737854246 0.000000e+00 1026.0
7 TraesCS4A01G483200 chr4A 87.250 651 68 11 806 1449 737647868 737647226 0.000000e+00 728.0
8 TraesCS4A01G483200 chr4A 87.360 625 51 10 584 1193 738070332 738070943 0.000000e+00 691.0
9 TraesCS4A01G483200 chr4A 88.147 464 34 10 584 1039 737855741 737855291 2.270000e-147 532.0
10 TraesCS4A01G483200 chr4A 82.986 576 71 21 3737 4295 738385109 738384544 2.980000e-136 496.0
11 TraesCS4A01G483200 chr4A 91.935 124 9 1 627 750 737858829 737858707 5.710000e-39 172.0
12 TraesCS4A01G483200 chr4A 96.923 65 2 0 683 747 738059360 738059424 4.540000e-20 110.0
13 TraesCS4A01G483200 chr4A 100.000 57 0 0 1 57 738349674 738349730 5.870000e-19 106.0
14 TraesCS4A01G483200 chr4A 100.000 30 0 0 4091 4120 738389683 738389654 6.000000e-04 56.5
15 TraesCS4A01G483200 chr7A 87.110 3530 373 37 584 4092 5354585 5351117 0.000000e+00 3923.0
16 TraesCS4A01G483200 chr7A 85.792 3688 401 61 640 4281 4999161 5002771 0.000000e+00 3794.0
17 TraesCS4A01G483200 chr7A 86.293 3531 394 45 585 4092 5609565 5613028 0.000000e+00 3757.0
18 TraesCS4A01G483200 chr7A 86.129 3482 369 58 640 4092 5749250 5745854 0.000000e+00 3650.0
19 TraesCS4A01G483200 chr7A 87.622 1640 195 6 1301 2936 5777708 5776073 0.000000e+00 1897.0
20 TraesCS4A01G483200 chr7A 87.560 1656 183 14 2448 4089 5023345 5024991 0.000000e+00 1895.0
21 TraesCS4A01G483200 chr7A 87.170 1138 126 13 2930 4057 5772858 5771731 0.000000e+00 1275.0
22 TraesCS4A01G483200 chr7A 88.278 964 106 5 1452 2415 5022399 5023355 0.000000e+00 1147.0
23 TraesCS4A01G483200 chr7A 85.578 735 55 18 616 1341 5014510 5015202 0.000000e+00 723.0
24 TraesCS4A01G483200 chr7A 77.560 713 68 37 584 1283 5778389 5777756 3.180000e-91 346.0
25 TraesCS4A01G483200 chr7A 84.177 158 21 4 4092 4246 5350849 5350693 2.680000e-32 150.0
26 TraesCS4A01G483200 chr7A 100.000 29 0 0 4092 4120 5771758 5771730 2.000000e-03 54.7
27 TraesCS4A01G483200 chr7D 87.422 1598 159 22 697 2283 5024244 5025810 0.000000e+00 1799.0
28 TraesCS4A01G483200 chr7D 85.447 962 120 14 2437 3387 5031634 5032586 0.000000e+00 983.0
29 TraesCS4A01G483200 chr7D 94.737 57 1 2 414 468 124517505 124517561 2.130000e-13 87.9
30 TraesCS4A01G483200 chrUn 86.995 1138 128 13 2930 4057 228698046 228696919 0.000000e+00 1264.0
31 TraesCS4A01G483200 chrUn 89.168 757 76 4 1301 2054 382627870 382628623 0.000000e+00 939.0
32 TraesCS4A01G483200 chrUn 77.461 701 66 34 584 1271 382627189 382627810 6.880000e-88 335.0
33 TraesCS4A01G483200 chrUn 78.717 343 33 17 584 925 474005605 474005302 4.380000e-45 193.0
34 TraesCS4A01G483200 chrUn 91.379 58 3 2 530 586 344773588 344773532 1.280000e-10 78.7
35 TraesCS4A01G483200 chrUn 91.379 58 3 2 530 586 364811101 364811045 1.280000e-10 78.7
36 TraesCS4A01G483200 chrUn 100.000 29 0 0 4092 4120 228696946 228696918 2.000000e-03 54.7
37 TraesCS4A01G483200 chrUn 100.000 29 0 0 4092 4120 435278310 435278282 2.000000e-03 54.7
38 TraesCS4A01G483200 chr2D 85.955 1068 130 12 3036 4092 614368090 614369148 0.000000e+00 1123.0
39 TraesCS4A01G483200 chr2D 84.341 645 69 17 696 1327 614347449 614348074 1.710000e-168 603.0
40 TraesCS4A01G483200 chr2D 89.423 104 8 3 586 689 614328635 614328735 1.250000e-25 128.0
41 TraesCS4A01G483200 chr2D 79.464 112 17 5 475 583 347800843 347800951 1.660000e-09 75.0
42 TraesCS4A01G483200 chr2D 88.462 52 6 0 3 54 576406064 576406115 3.590000e-06 63.9
43 TraesCS4A01G483200 chr2D 88.462 52 6 0 3 54 576423975 576424026 3.590000e-06 63.9
44 TraesCS4A01G483200 chr2D 88.462 52 6 0 3 54 576441691 576441742 3.590000e-06 63.9
45 TraesCS4A01G483200 chr2B 90.909 110 7 3 365 471 118314526 118314417 1.240000e-30 145.0
46 TraesCS4A01G483200 chr2B 90.769 65 2 2 407 467 666627118 666627182 2.750000e-12 84.2
47 TraesCS4A01G483200 chr6D 83.721 86 12 2 509 593 433677393 433677477 3.560000e-11 80.5
48 TraesCS4A01G483200 chr6D 92.727 55 2 2 530 583 15169726 15169673 1.280000e-10 78.7
49 TraesCS4A01G483200 chr3B 91.667 60 1 2 410 465 710918596 710918537 3.560000e-11 80.5
50 TraesCS4A01G483200 chr3B 90.698 43 2 2 17 57 344271950 344271992 6.000000e-04 56.5
51 TraesCS4A01G483200 chr7B 92.727 55 2 2 530 583 693681404 693681457 1.280000e-10 78.7
52 TraesCS4A01G483200 chr5B 84.810 79 11 1 512 589 647905489 647905411 1.280000e-10 78.7
53 TraesCS4A01G483200 chr4D 79.825 114 13 9 475 583 15420930 15421038 1.660000e-09 75.0
54 TraesCS4A01G483200 chr5D 84.932 73 9 2 512 583 465029413 465029484 5.960000e-09 73.1
55 TraesCS4A01G483200 chr6A 89.474 57 4 2 414 468 201366238 201366294 2.140000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G483200 chr4A 738349674 738353968 4294 False 3771.500000 7437 100.00000 1 4295 2 chr4A.!!$F3 4294
1 TraesCS4A01G483200 chr4A 737844760 737847210 2450 True 2699.000000 2699 86.47700 625 3147 1 chr4A.!!$R2 2522
2 TraesCS4A01G483200 chr4A 738521532 738523995 2463 True 2689.000000 2689 86.42600 1819 4295 1 chr4A.!!$R4 2476
3 TraesCS4A01G483200 chr4A 738389654 738393056 3402 True 1267.833333 1977 91.08500 721 4120 3 chr4A.!!$R6 3399
4 TraesCS4A01G483200 chr4A 737852122 737858829 6707 True 1085.000000 2610 89.86875 584 4295 4 chr4A.!!$R5 3711
5 TraesCS4A01G483200 chr4A 737647226 737647868 642 True 728.000000 728 87.25000 806 1449 1 chr4A.!!$R1 643
6 TraesCS4A01G483200 chr4A 738070332 738070943 611 False 691.000000 691 87.36000 584 1193 1 chr4A.!!$F2 609
7 TraesCS4A01G483200 chr4A 738384544 738385109 565 True 496.000000 496 82.98600 3737 4295 1 chr4A.!!$R3 558
8 TraesCS4A01G483200 chr7A 4999161 5002771 3610 False 3794.000000 3794 85.79200 640 4281 1 chr7A.!!$F1 3641
9 TraesCS4A01G483200 chr7A 5609565 5613028 3463 False 3757.000000 3757 86.29300 585 4092 1 chr7A.!!$F3 3507
10 TraesCS4A01G483200 chr7A 5745854 5749250 3396 True 3650.000000 3650 86.12900 640 4092 1 chr7A.!!$R1 3452
11 TraesCS4A01G483200 chr7A 5350693 5354585 3892 True 2036.500000 3923 85.64350 584 4246 2 chr7A.!!$R2 3662
12 TraesCS4A01G483200 chr7A 5022399 5024991 2592 False 1521.000000 1895 87.91900 1452 4089 2 chr7A.!!$F4 2637
13 TraesCS4A01G483200 chr7A 5771730 5778389 6659 True 893.175000 1897 88.08800 584 4120 4 chr7A.!!$R3 3536
14 TraesCS4A01G483200 chr7A 5014510 5015202 692 False 723.000000 723 85.57800 616 1341 1 chr7A.!!$F2 725
15 TraesCS4A01G483200 chr7D 5024244 5025810 1566 False 1799.000000 1799 87.42200 697 2283 1 chr7D.!!$F1 1586
16 TraesCS4A01G483200 chr7D 5031634 5032586 952 False 983.000000 983 85.44700 2437 3387 1 chr7D.!!$F2 950
17 TraesCS4A01G483200 chrUn 228696918 228698046 1128 True 659.350000 1264 93.49750 2930 4120 2 chrUn.!!$R5 1190
18 TraesCS4A01G483200 chrUn 382627189 382628623 1434 False 637.000000 939 83.31450 584 2054 2 chrUn.!!$F1 1470
19 TraesCS4A01G483200 chr2D 614368090 614369148 1058 False 1123.000000 1123 85.95500 3036 4092 1 chr2D.!!$F7 1056
20 TraesCS4A01G483200 chr2D 614347449 614348074 625 False 603.000000 603 84.34100 696 1327 1 chr2D.!!$F6 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 460 0.043940 AGAGGCCTCCCTGTTCATCT 59.956 55.000 29.54 3.28 43.12 2.90 F
514 515 0.167908 GCCGCAATCATCACAACGAA 59.832 50.000 0.00 0.00 0.00 3.85 F
1081 3644 0.179092 CTCCGATGCACATCAGCTCA 60.179 55.000 11.00 0.00 37.69 4.26 F
1843 4465 0.885196 GCATCTCTACCTAGGCGGAG 59.115 60.000 19.74 19.74 36.31 4.63 F
2217 4842 1.209990 AGCAGCCTTGATCTCTCTTGG 59.790 52.381 0.00 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1838 4460 0.384669 ACCGTATAACTGAGCTCCGC 59.615 55.000 12.15 0.00 0.00 5.54 R
2420 5117 0.729690 GCAAGAGCCAAGATCCGTTC 59.270 55.000 0.00 0.00 33.58 3.95 R
2817 5515 1.363443 CAAGGCTTCCGCTTTGCAA 59.637 52.632 0.00 0.00 44.54 4.08 R
3135 9057 1.395635 CTGATAAGCCATTGCCTGCA 58.604 50.000 0.00 0.00 38.69 4.41 R
3931 9864 1.135915 TCATGCTTCTTCGGAGCTCTC 59.864 52.381 14.64 2.76 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.990543 GGCAAAGTCAAAATAAACAGCC 57.009 40.909 0.00 0.00 0.00 4.85
22 23 3.745975 GGCAAAGTCAAAATAAACAGCCC 59.254 43.478 0.00 0.00 32.50 5.19
23 24 3.428534 GCAAAGTCAAAATAAACAGCCCG 59.571 43.478 0.00 0.00 0.00 6.13
24 25 3.934457 AAGTCAAAATAAACAGCCCGG 57.066 42.857 0.00 0.00 0.00 5.73
25 26 2.871453 AGTCAAAATAAACAGCCCGGT 58.129 42.857 0.00 0.00 0.00 5.28
26 27 2.556622 AGTCAAAATAAACAGCCCGGTG 59.443 45.455 0.00 0.00 0.00 4.94
28 29 2.554893 TCAAAATAAACAGCCCGGTGTC 59.445 45.455 0.00 0.00 0.00 3.67
29 30 1.541379 AAATAAACAGCCCGGTGTCC 58.459 50.000 0.00 0.00 0.00 4.02
31 32 0.322187 ATAAACAGCCCGGTGTCCAC 60.322 55.000 0.00 0.00 0.00 4.02
40 41 3.771160 GGTGTCCACCCTCGCGAT 61.771 66.667 10.36 0.00 45.68 4.58
41 42 2.202756 GTGTCCACCCTCGCGATC 60.203 66.667 10.36 0.00 0.00 3.69
42 43 2.362503 TGTCCACCCTCGCGATCT 60.363 61.111 10.36 0.00 0.00 2.75
43 44 2.105128 GTCCACCCTCGCGATCTG 59.895 66.667 10.36 4.97 0.00 2.90
44 45 3.838271 TCCACCCTCGCGATCTGC 61.838 66.667 10.36 0.00 41.47 4.26
45 46 3.842923 CCACCCTCGCGATCTGCT 61.843 66.667 10.36 0.00 43.27 4.24
47 48 3.842923 ACCCTCGCGATCTGCTGG 61.843 66.667 10.36 5.97 43.27 4.85
49 50 2.279120 CCTCGCGATCTGCTGGTC 60.279 66.667 10.36 0.00 43.27 4.02
50 51 2.653448 CTCGCGATCTGCTGGTCG 60.653 66.667 20.59 20.59 43.27 4.79
288 289 2.746550 CGTTTGTGATGTGATTCGTCG 58.253 47.619 0.00 0.00 35.01 5.12
289 290 2.154963 CGTTTGTGATGTGATTCGTCGT 59.845 45.455 0.00 0.00 35.01 4.34
290 291 3.362534 CGTTTGTGATGTGATTCGTCGTA 59.637 43.478 0.00 0.00 35.01 3.43
291 292 4.625135 GTTTGTGATGTGATTCGTCGTAC 58.375 43.478 0.00 0.00 35.01 3.67
292 293 3.842732 TGTGATGTGATTCGTCGTACT 57.157 42.857 0.00 0.00 35.01 2.73
293 294 3.498082 TGTGATGTGATTCGTCGTACTG 58.502 45.455 0.00 0.00 35.01 2.74
295 296 3.542704 GTGATGTGATTCGTCGTACTGTC 59.457 47.826 0.00 0.00 35.01 3.51
298 299 3.072211 TGTGATTCGTCGTACTGTCTCT 58.928 45.455 0.00 0.00 0.00 3.10
299 300 3.120304 TGTGATTCGTCGTACTGTCTCTG 60.120 47.826 0.00 0.00 0.00 3.35
300 301 3.072211 TGATTCGTCGTACTGTCTCTGT 58.928 45.455 0.00 0.00 0.00 3.41
301 302 3.124806 TGATTCGTCGTACTGTCTCTGTC 59.875 47.826 0.00 0.00 0.00 3.51
302 303 2.159327 TCGTCGTACTGTCTCTGTCA 57.841 50.000 0.00 0.00 0.00 3.58
303 304 2.696506 TCGTCGTACTGTCTCTGTCAT 58.303 47.619 0.00 0.00 0.00 3.06
304 305 3.072211 TCGTCGTACTGTCTCTGTCATT 58.928 45.455 0.00 0.00 0.00 2.57
305 306 3.501062 TCGTCGTACTGTCTCTGTCATTT 59.499 43.478 0.00 0.00 0.00 2.32
306 307 3.846896 CGTCGTACTGTCTCTGTCATTTC 59.153 47.826 0.00 0.00 0.00 2.17
307 308 3.846896 GTCGTACTGTCTCTGTCATTTCG 59.153 47.826 0.00 0.00 0.00 3.46
308 309 3.749609 TCGTACTGTCTCTGTCATTTCGA 59.250 43.478 0.00 0.00 0.00 3.71
309 310 4.092120 CGTACTGTCTCTGTCATTTCGAG 58.908 47.826 0.00 0.00 0.00 4.04
310 311 2.953020 ACTGTCTCTGTCATTTCGAGC 58.047 47.619 0.00 0.00 0.00 5.03
311 312 2.560542 ACTGTCTCTGTCATTTCGAGCT 59.439 45.455 0.00 0.00 0.00 4.09
312 313 3.006323 ACTGTCTCTGTCATTTCGAGCTT 59.994 43.478 0.00 0.00 0.00 3.74
314 315 4.738124 TGTCTCTGTCATTTCGAGCTTAG 58.262 43.478 0.00 0.00 0.00 2.18
316 317 4.017126 TCTCTGTCATTTCGAGCTTAGGA 58.983 43.478 0.00 0.00 0.00 2.94
317 318 4.097135 TCTCTGTCATTTCGAGCTTAGGAG 59.903 45.833 0.00 0.00 0.00 3.69
318 319 4.017126 TCTGTCATTTCGAGCTTAGGAGA 58.983 43.478 0.00 0.00 0.00 3.71
320 321 5.127845 TCTGTCATTTCGAGCTTAGGAGATT 59.872 40.000 0.00 0.00 0.00 2.40
321 322 6.321435 TCTGTCATTTCGAGCTTAGGAGATTA 59.679 38.462 0.00 0.00 0.00 1.75
322 323 6.507900 TGTCATTTCGAGCTTAGGAGATTAG 58.492 40.000 0.00 0.00 0.00 1.73
324 325 3.627732 TTCGAGCTTAGGAGATTAGCG 57.372 47.619 0.00 0.00 39.82 4.26
325 326 1.267261 TCGAGCTTAGGAGATTAGCGC 59.733 52.381 0.00 0.00 39.82 5.92
326 327 1.001268 CGAGCTTAGGAGATTAGCGCA 60.001 52.381 11.47 0.00 39.82 6.09
328 329 3.249917 GAGCTTAGGAGATTAGCGCATC 58.750 50.000 11.47 4.62 39.82 3.91
329 330 2.896685 AGCTTAGGAGATTAGCGCATCT 59.103 45.455 11.47 10.49 39.82 2.90
332 333 5.011125 AGCTTAGGAGATTAGCGCATCTTTA 59.989 40.000 11.47 4.69 39.82 1.85
333 334 5.696724 GCTTAGGAGATTAGCGCATCTTTAA 59.303 40.000 11.47 11.56 33.36 1.52
335 336 5.993106 AGGAGATTAGCGCATCTTTAAAC 57.007 39.130 11.47 0.00 33.36 2.01
337 338 6.116126 AGGAGATTAGCGCATCTTTAAACTT 58.884 36.000 11.47 0.00 33.36 2.66
338 339 6.599638 AGGAGATTAGCGCATCTTTAAACTTT 59.400 34.615 11.47 0.00 33.36 2.66
339 340 7.769044 AGGAGATTAGCGCATCTTTAAACTTTA 59.231 33.333 11.47 0.00 33.36 1.85
341 342 9.587461 GAGATTAGCGCATCTTTAAACTTTATC 57.413 33.333 11.47 0.00 33.36 1.75
342 343 9.331282 AGATTAGCGCATCTTTAAACTTTATCT 57.669 29.630 11.47 0.00 28.19 1.98
344 345 8.718102 TTAGCGCATCTTTAAACTTTATCTCT 57.282 30.769 11.47 0.00 0.00 3.10
345 346 9.811995 TTAGCGCATCTTTAAACTTTATCTCTA 57.188 29.630 11.47 0.00 0.00 2.43
346 347 8.718102 AGCGCATCTTTAAACTTTATCTCTAA 57.282 30.769 11.47 0.00 0.00 2.10
347 348 9.162764 AGCGCATCTTTAAACTTTATCTCTAAA 57.837 29.630 11.47 0.00 0.00 1.85
358 359 7.706281 ACTTTATCTCTAAATGTGCTGATCG 57.294 36.000 0.00 0.00 0.00 3.69
359 360 7.492524 ACTTTATCTCTAAATGTGCTGATCGA 58.507 34.615 0.00 0.00 0.00 3.59
360 361 7.981789 ACTTTATCTCTAAATGTGCTGATCGAA 59.018 33.333 0.00 0.00 0.00 3.71
361 362 8.893219 TTTATCTCTAAATGTGCTGATCGAAT 57.107 30.769 0.00 0.00 0.00 3.34
362 363 6.782298 ATCTCTAAATGTGCTGATCGAATG 57.218 37.500 0.00 0.00 0.00 2.67
363 364 5.052481 TCTCTAAATGTGCTGATCGAATGG 58.948 41.667 0.00 0.00 0.00 3.16
365 366 5.185454 TCTAAATGTGCTGATCGAATGGTT 58.815 37.500 0.00 0.00 0.00 3.67
366 367 3.770263 AATGTGCTGATCGAATGGTTG 57.230 42.857 0.00 0.00 0.00 3.77
367 368 2.183478 TGTGCTGATCGAATGGTTGT 57.817 45.000 0.00 0.00 0.00 3.32
368 369 3.326836 TGTGCTGATCGAATGGTTGTA 57.673 42.857 0.00 0.00 0.00 2.41
369 370 3.669536 TGTGCTGATCGAATGGTTGTAA 58.330 40.909 0.00 0.00 0.00 2.41
372 373 5.877564 TGTGCTGATCGAATGGTTGTAATAA 59.122 36.000 0.00 0.00 0.00 1.40
373 374 6.037062 TGTGCTGATCGAATGGTTGTAATAAG 59.963 38.462 0.00 0.00 0.00 1.73
374 375 6.037172 GTGCTGATCGAATGGTTGTAATAAGT 59.963 38.462 0.00 0.00 0.00 2.24
375 376 6.597672 TGCTGATCGAATGGTTGTAATAAGTT 59.402 34.615 0.00 0.00 0.00 2.66
377 378 7.429340 GCTGATCGAATGGTTGTAATAAGTTTG 59.571 37.037 0.00 0.00 0.00 2.93
378 379 8.554835 TGATCGAATGGTTGTAATAAGTTTGA 57.445 30.769 0.00 0.00 0.00 2.69
379 380 9.004717 TGATCGAATGGTTGTAATAAGTTTGAA 57.995 29.630 0.00 0.00 0.00 2.69
380 381 9.274065 GATCGAATGGTTGTAATAAGTTTGAAC 57.726 33.333 0.00 0.00 0.00 3.18
381 382 7.586747 TCGAATGGTTGTAATAAGTTTGAACC 58.413 34.615 0.00 0.00 34.62 3.62
382 383 6.804783 CGAATGGTTGTAATAAGTTTGAACCC 59.195 38.462 0.00 0.00 33.33 4.11
383 384 7.308951 CGAATGGTTGTAATAAGTTTGAACCCT 60.309 37.037 0.00 0.00 33.33 4.34
387 388 9.198475 TGGTTGTAATAAGTTTGAACCCTTTTA 57.802 29.630 0.00 0.00 33.33 1.52
388 389 9.687210 GGTTGTAATAAGTTTGAACCCTTTTAG 57.313 33.333 0.00 0.00 0.00 1.85
400 401 3.662759 CCCTTTTAGATGGGGCTGTAA 57.337 47.619 0.00 0.00 39.76 2.41
401 402 3.976015 CCCTTTTAGATGGGGCTGTAAA 58.024 45.455 0.00 0.00 39.76 2.01
403 404 4.584743 CCCTTTTAGATGGGGCTGTAAATC 59.415 45.833 0.00 0.00 39.76 2.17
404 405 5.449553 CCTTTTAGATGGGGCTGTAAATCT 58.550 41.667 0.00 0.00 33.96 2.40
405 406 5.300286 CCTTTTAGATGGGGCTGTAAATCTG 59.700 44.000 0.00 0.00 31.90 2.90
406 407 5.708736 TTTAGATGGGGCTGTAAATCTGA 57.291 39.130 0.00 0.00 31.90 3.27
407 408 3.567478 AGATGGGGCTGTAAATCTGAC 57.433 47.619 0.00 0.00 0.00 3.51
409 410 3.135530 AGATGGGGCTGTAAATCTGACTC 59.864 47.826 0.00 0.00 0.00 3.36
411 412 2.237143 TGGGGCTGTAAATCTGACTCTG 59.763 50.000 0.00 0.00 0.00 3.35
412 413 2.501723 GGGGCTGTAAATCTGACTCTGA 59.498 50.000 0.00 0.00 0.00 3.27
413 414 3.135530 GGGGCTGTAAATCTGACTCTGAT 59.864 47.826 0.00 0.00 0.00 2.90
414 415 4.125703 GGGCTGTAAATCTGACTCTGATG 58.874 47.826 0.00 0.00 0.00 3.07
415 416 4.125703 GGCTGTAAATCTGACTCTGATGG 58.874 47.826 0.00 0.00 0.00 3.51
416 417 4.383552 GGCTGTAAATCTGACTCTGATGGT 60.384 45.833 0.00 0.00 0.00 3.55
417 418 5.181748 GCTGTAAATCTGACTCTGATGGTT 58.818 41.667 0.00 0.00 0.00 3.67
418 419 5.645497 GCTGTAAATCTGACTCTGATGGTTT 59.355 40.000 0.00 0.00 0.00 3.27
419 420 6.183360 GCTGTAAATCTGACTCTGATGGTTTC 60.183 42.308 0.00 0.00 0.00 2.78
420 421 6.768483 TGTAAATCTGACTCTGATGGTTTCA 58.232 36.000 0.00 0.00 0.00 2.69
421 422 7.397221 TGTAAATCTGACTCTGATGGTTTCAT 58.603 34.615 0.00 0.00 32.72 2.57
422 423 7.884877 TGTAAATCTGACTCTGATGGTTTCATT 59.115 33.333 0.00 0.00 32.72 2.57
423 424 6.998968 AATCTGACTCTGATGGTTTCATTC 57.001 37.500 0.00 0.00 32.72 2.67
424 425 4.498241 TCTGACTCTGATGGTTTCATTCG 58.502 43.478 0.00 0.00 32.72 3.34
425 426 4.021104 TCTGACTCTGATGGTTTCATTCGT 60.021 41.667 0.00 0.00 32.72 3.85
427 428 5.789521 TGACTCTGATGGTTTCATTCGTTA 58.210 37.500 0.00 0.00 32.72 3.18
428 429 6.227522 TGACTCTGATGGTTTCATTCGTTAA 58.772 36.000 0.00 0.00 32.72 2.01
429 430 6.878923 TGACTCTGATGGTTTCATTCGTTAAT 59.121 34.615 0.00 0.00 32.72 1.40
430 431 7.076842 ACTCTGATGGTTTCATTCGTTAATG 57.923 36.000 0.00 0.00 43.32 1.90
431 432 6.094048 ACTCTGATGGTTTCATTCGTTAATGG 59.906 38.462 0.00 0.00 42.40 3.16
432 433 6.176896 TCTGATGGTTTCATTCGTTAATGGA 58.823 36.000 0.00 0.00 42.40 3.41
434 435 4.695217 TGGTTTCATTCGTTAATGGAGC 57.305 40.909 0.00 0.00 42.40 4.70
435 436 3.442273 TGGTTTCATTCGTTAATGGAGCC 59.558 43.478 5.56 5.56 46.96 4.70
437 438 1.948104 TCATTCGTTAATGGAGCCGG 58.052 50.000 0.00 0.00 42.40 6.13
438 439 0.944386 CATTCGTTAATGGAGCCGGG 59.056 55.000 2.18 0.00 39.10 5.73
439 440 0.179029 ATTCGTTAATGGAGCCGGGG 60.179 55.000 2.18 0.00 0.00 5.73
440 441 1.266160 TTCGTTAATGGAGCCGGGGA 61.266 55.000 2.18 0.00 0.00 4.81
441 442 1.227556 CGTTAATGGAGCCGGGGAG 60.228 63.158 2.18 0.00 0.00 4.30
442 443 1.682451 CGTTAATGGAGCCGGGGAGA 61.682 60.000 2.18 0.00 0.00 3.71
443 444 0.106894 GTTAATGGAGCCGGGGAGAG 59.893 60.000 2.18 0.00 0.00 3.20
444 445 1.054406 TTAATGGAGCCGGGGAGAGG 61.054 60.000 2.18 0.00 0.00 3.69
456 457 4.136978 GAGAGGCCTCCCTGTTCA 57.863 61.111 29.54 0.00 43.12 3.18
457 458 2.614001 GAGAGGCCTCCCTGTTCAT 58.386 57.895 29.54 7.98 43.12 2.57
459 460 0.043940 AGAGGCCTCCCTGTTCATCT 59.956 55.000 29.54 3.28 43.12 2.90
460 461 1.292242 AGAGGCCTCCCTGTTCATCTA 59.708 52.381 29.54 0.00 43.12 1.98
463 464 2.919602 AGGCCTCCCTGTTCATCTAAAA 59.080 45.455 0.00 0.00 40.94 1.52
464 465 3.333680 AGGCCTCCCTGTTCATCTAAAAA 59.666 43.478 0.00 0.00 40.94 1.94
487 488 6.590656 AAATATTTCTATGTGGACCCTGGA 57.409 37.500 0.00 0.00 0.00 3.86
489 490 1.580059 TTCTATGTGGACCCTGGACC 58.420 55.000 0.00 0.00 0.00 4.46
490 491 0.716591 TCTATGTGGACCCTGGACCT 59.283 55.000 6.27 0.00 0.00 3.85
491 492 0.833287 CTATGTGGACCCTGGACCTG 59.167 60.000 6.27 0.00 0.00 4.00
492 493 1.271840 TATGTGGACCCTGGACCTGC 61.272 60.000 6.27 0.68 0.00 4.85
493 494 4.035102 GTGGACCCTGGACCTGCC 62.035 72.222 6.27 0.00 37.10 4.85
494 495 4.590553 TGGACCCTGGACCTGCCA 62.591 66.667 6.27 0.00 46.96 4.92
509 510 2.409055 GCCAGCCGCAATCATCACA 61.409 57.895 0.00 0.00 37.47 3.58
510 511 1.936436 GCCAGCCGCAATCATCACAA 61.936 55.000 0.00 0.00 37.47 3.33
511 512 0.179156 CCAGCCGCAATCATCACAAC 60.179 55.000 0.00 0.00 0.00 3.32
512 513 0.521867 CAGCCGCAATCATCACAACG 60.522 55.000 0.00 0.00 0.00 4.10
513 514 0.673333 AGCCGCAATCATCACAACGA 60.673 50.000 0.00 0.00 0.00 3.85
514 515 0.167908 GCCGCAATCATCACAACGAA 59.832 50.000 0.00 0.00 0.00 3.85
516 517 2.708514 CCGCAATCATCACAACGAATC 58.291 47.619 0.00 0.00 0.00 2.52
517 518 2.356892 CGCAATCATCACAACGAATCG 58.643 47.619 0.00 0.00 0.00 3.34
518 519 2.104144 GCAATCATCACAACGAATCGC 58.896 47.619 1.15 0.00 0.00 4.58
520 521 3.746089 CAATCATCACAACGAATCGCAA 58.254 40.909 1.15 0.00 0.00 4.85
521 522 4.157649 CAATCATCACAACGAATCGCAAA 58.842 39.130 1.15 0.00 0.00 3.68
522 523 3.454042 TCATCACAACGAATCGCAAAG 57.546 42.857 1.15 0.00 0.00 2.77
524 525 3.684305 TCATCACAACGAATCGCAAAGAT 59.316 39.130 1.15 0.00 42.43 2.40
525 526 3.454042 TCACAACGAATCGCAAAGATG 57.546 42.857 1.15 0.00 40.02 2.90
527 528 3.991121 TCACAACGAATCGCAAAGATGTA 59.009 39.130 1.15 0.00 40.02 2.29
528 529 4.081761 CACAACGAATCGCAAAGATGTAC 58.918 43.478 1.15 0.00 40.02 2.90
529 530 3.994392 ACAACGAATCGCAAAGATGTACT 59.006 39.130 1.15 0.00 40.02 2.73
530 531 4.143115 ACAACGAATCGCAAAGATGTACTG 60.143 41.667 1.15 0.00 40.02 2.74
531 532 2.930040 ACGAATCGCAAAGATGTACTGG 59.070 45.455 1.15 0.00 40.02 4.00
533 534 3.000322 CGAATCGCAAAGATGTACTGGAC 60.000 47.826 0.00 0.00 40.02 4.02
534 535 1.990799 TCGCAAAGATGTACTGGACG 58.009 50.000 0.00 0.00 0.00 4.79
535 536 0.999406 CGCAAAGATGTACTGGACGG 59.001 55.000 0.00 0.00 0.00 4.79
536 537 1.369625 GCAAAGATGTACTGGACGGG 58.630 55.000 0.00 0.00 0.00 5.28
537 538 2.012051 GCAAAGATGTACTGGACGGGG 61.012 57.143 0.00 0.00 0.00 5.73
538 539 1.278127 CAAAGATGTACTGGACGGGGT 59.722 52.381 0.00 0.00 0.00 4.95
540 541 2.068834 AGATGTACTGGACGGGGTAG 57.931 55.000 0.00 0.00 0.00 3.18
541 542 1.567649 AGATGTACTGGACGGGGTAGA 59.432 52.381 0.00 0.00 0.00 2.59
542 543 2.177233 AGATGTACTGGACGGGGTAGAT 59.823 50.000 0.00 0.00 0.00 1.98
543 544 2.537633 TGTACTGGACGGGGTAGATT 57.462 50.000 0.00 0.00 0.00 2.40
545 546 2.762327 TGTACTGGACGGGGTAGATTTC 59.238 50.000 0.00 0.00 0.00 2.17
546 547 0.822164 ACTGGACGGGGTAGATTTCG 59.178 55.000 0.00 0.00 0.00 3.46
547 548 1.108776 CTGGACGGGGTAGATTTCGA 58.891 55.000 0.00 0.00 0.00 3.71
548 549 1.067212 CTGGACGGGGTAGATTTCGAG 59.933 57.143 0.00 0.00 0.00 4.04
549 550 0.249363 GGACGGGGTAGATTTCGAGC 60.249 60.000 0.00 0.00 0.00 5.03
550 551 0.745468 GACGGGGTAGATTTCGAGCT 59.255 55.000 0.00 0.00 0.00 4.09
551 552 0.745468 ACGGGGTAGATTTCGAGCTC 59.255 55.000 2.73 2.73 0.00 4.09
553 554 1.415200 GGGGTAGATTTCGAGCTCCT 58.585 55.000 8.47 1.06 0.00 3.69
554 555 1.069358 GGGGTAGATTTCGAGCTCCTG 59.931 57.143 8.47 0.00 0.00 3.86
555 556 1.757699 GGGTAGATTTCGAGCTCCTGT 59.242 52.381 8.47 0.00 0.00 4.00
556 557 2.482142 GGGTAGATTTCGAGCTCCTGTG 60.482 54.545 8.47 0.00 0.00 3.66
558 559 2.957491 AGATTTCGAGCTCCTGTGAG 57.043 50.000 8.47 0.00 41.84 3.51
575 576 3.699779 TGAGCTCGTGATCACATACTC 57.300 47.619 24.93 23.59 33.24 2.59
578 579 2.099921 AGCTCGTGATCACATACTCCAC 59.900 50.000 24.93 5.72 0.00 4.02
580 581 2.561733 CGTGATCACATACTCCACGT 57.438 50.000 24.93 0.00 43.62 4.49
581 582 2.451132 CGTGATCACATACTCCACGTC 58.549 52.381 24.93 0.00 43.62 4.34
592 3098 1.248486 CTCCACGTCCACTTCTCAGA 58.752 55.000 0.00 0.00 0.00 3.27
600 3106 3.502595 CGTCCACTTCTCAGAGACAACTA 59.497 47.826 0.00 0.00 31.19 2.24
763 3281 1.459592 CGTCCGTCAAATTCACTGGTC 59.540 52.381 0.00 0.00 0.00 4.02
790 3308 5.455056 ACTGTCACAAGTAGACGAATTCT 57.545 39.130 3.52 0.00 38.83 2.40
875 3413 2.949106 CTTGCTCACAGGGTTGCG 59.051 61.111 0.00 0.00 0.00 4.85
881 3419 2.669569 CACAGGGTTGCGGTCAGG 60.670 66.667 0.00 0.00 0.00 3.86
937 3491 8.321353 TCAGAAACATGGACTCACTAATATTGT 58.679 33.333 0.00 0.00 0.00 2.71
1073 3636 4.783621 GCTGGCCTCCGATGCACA 62.784 66.667 3.32 0.00 0.00 4.57
1081 3644 0.179092 CTCCGATGCACATCAGCTCA 60.179 55.000 11.00 0.00 37.69 4.26
1283 3869 4.338400 TGATCTTCGTAGTCTGTATGTGGG 59.662 45.833 0.00 0.00 0.00 4.61
1287 3873 2.764010 TCGTAGTCTGTATGTGGGCATT 59.236 45.455 0.00 0.00 36.58 3.56
1327 3946 2.094545 GCTTTGGTTGGCCAGATAAGTG 60.095 50.000 5.11 0.00 46.91 3.16
1519 4141 2.950975 TCAAACTTGCAGCATCTTGACA 59.049 40.909 0.00 0.00 0.00 3.58
1544 4166 7.149569 TCTCATGTCAATTTGATGGAGAAAC 57.850 36.000 17.76 1.26 31.52 2.78
1545 4167 6.151648 TCTCATGTCAATTTGATGGAGAAACC 59.848 38.462 17.76 0.00 31.52 3.27
1624 4246 5.174037 TGGAATGAATTCGGTAAACCTCT 57.826 39.130 0.04 0.00 37.67 3.69
1632 4254 2.422597 TCGGTAAACCTCTGCACAATG 58.577 47.619 0.00 0.00 0.00 2.82
1643 4265 1.274167 CTGCACAATGGTTGATTGGCT 59.726 47.619 0.00 0.00 45.20 4.75
1653 4275 4.880759 TGGTTGATTGGCTTTATGTTGTG 58.119 39.130 0.00 0.00 0.00 3.33
1705 4327 2.276732 TGGGTTTTGCTCTCTTCCAG 57.723 50.000 0.00 0.00 0.00 3.86
1708 4330 1.609208 GTTTTGCTCTCTTCCAGCCA 58.391 50.000 0.00 0.00 35.89 4.75
1709 4331 2.165998 GTTTTGCTCTCTTCCAGCCAT 58.834 47.619 0.00 0.00 35.89 4.40
1711 4333 2.996249 TTGCTCTCTTCCAGCCATAG 57.004 50.000 0.00 0.00 35.89 2.23
1723 4345 4.229639 TCCAGCCATAGATCATTCACTCT 58.770 43.478 0.00 0.00 0.00 3.24
1751 4373 8.483758 ACATATTAACCTTACCAAACTCGAGAT 58.516 33.333 21.68 3.75 0.00 2.75
1836 4458 1.481428 GGCCTCCAGCATCTCTACCTA 60.481 57.143 0.00 0.00 46.50 3.08
1838 4460 2.524306 CCTCCAGCATCTCTACCTAGG 58.476 57.143 7.41 7.41 0.00 3.02
1843 4465 0.885196 GCATCTCTACCTAGGCGGAG 59.115 60.000 19.74 19.74 36.31 4.63
1965 4590 7.391554 ACAAGCTTCAGAAAACTATGCAATCTA 59.608 33.333 0.00 0.00 0.00 1.98
1975 4600 8.814038 AAAACTATGCAATCTAAGAATCCTGT 57.186 30.769 0.00 0.00 0.00 4.00
2084 4709 7.255942 GCTGTATTTGGGCTCCAACAATATTAT 60.256 37.037 6.19 0.00 43.82 1.28
2216 4841 2.695127 AGCAGCCTTGATCTCTCTTG 57.305 50.000 0.00 0.00 0.00 3.02
2217 4842 1.209990 AGCAGCCTTGATCTCTCTTGG 59.790 52.381 0.00 0.00 0.00 3.61
2234 4859 4.416516 TCTTGGAACTATCTCAGTGGACA 58.583 43.478 0.00 0.00 37.63 4.02
2251 4876 2.158856 GGACATGTGCCATCTGAGATCA 60.159 50.000 1.15 0.00 0.00 2.92
2271 4968 1.345089 AGCATGCTTGGCAATTTGACA 59.655 42.857 16.30 0.00 43.62 3.58
2272 4969 1.730064 GCATGCTTGGCAATTTGACAG 59.270 47.619 11.37 1.60 43.62 3.51
2293 4990 2.725221 AATGGATCTCAGAGGCAACC 57.275 50.000 0.00 0.00 37.17 3.77
2298 4995 2.626840 GATCTCAGAGGCAACCACTTC 58.373 52.381 0.00 0.00 37.17 3.01
2354 5051 2.165319 ACGAGGTTAAAGGTGCTGTC 57.835 50.000 0.00 0.00 0.00 3.51
2363 5060 5.529800 GGTTAAAGGTGCTGTCTTTAAGTGA 59.470 40.000 14.82 0.00 43.21 3.41
2368 5065 5.241662 AGGTGCTGTCTTTAAGTGAGAATC 58.758 41.667 0.00 0.00 0.00 2.52
2389 5086 3.655777 TCCCTTGAGGATTACAGTTGGTT 59.344 43.478 0.00 0.00 40.93 3.67
2506 5204 6.094603 GGACATTTGCTGGATGGATATATCAC 59.905 42.308 14.60 4.90 0.00 3.06
2599 5297 2.562298 TCCAACAATGAAATCAGTGGCC 59.438 45.455 14.48 0.00 45.21 5.36
2640 5338 5.697633 GGAATTCATGTCACTGCAATTGTTT 59.302 36.000 7.93 0.00 0.00 2.83
2643 5341 4.619973 TCATGTCACTGCAATTGTTTTCC 58.380 39.130 7.40 0.00 0.00 3.13
2644 5342 3.077229 TGTCACTGCAATTGTTTTCCG 57.923 42.857 7.40 0.00 0.00 4.30
2690 5388 6.447162 GTGAAATCCCAAACTTACCAAGAAG 58.553 40.000 0.00 0.00 0.00 2.85
2732 5430 8.954350 CATGTCTGAAAACTCTTTATCTGGAAT 58.046 33.333 0.00 0.00 0.00 3.01
2760 5458 3.874383 TCAAACATTGGGACTCCAGAA 57.126 42.857 0.00 0.00 45.04 3.02
2781 5479 8.415553 CCAGAATTGATTTCATTATTGCTGGTA 58.584 33.333 0.00 0.00 36.75 3.25
2790 5488 7.514784 TTCATTATTGCTGGTATCCAATCAG 57.485 36.000 0.00 0.00 33.93 2.90
2800 5498 5.928976 TGGTATCCAATCAGATAACTGGTG 58.071 41.667 0.00 0.00 43.60 4.17
2802 5500 3.281727 TCCAATCAGATAACTGGTGGC 57.718 47.619 14.79 0.00 43.20 5.01
2850 5548 3.690460 AGCCTTGGTTCTATTGGACTTG 58.310 45.455 0.00 0.00 0.00 3.16
2851 5549 2.164422 GCCTTGGTTCTATTGGACTTGC 59.836 50.000 0.00 0.00 0.00 4.01
2962 8884 4.988540 GCAACTTCCCACCATTTCTAAAAC 59.011 41.667 0.00 0.00 0.00 2.43
3002 8924 6.943146 AGGTCTCTAGATCTATCACGCAATAA 59.057 38.462 2.11 0.00 32.86 1.40
3027 8949 2.872408 CGGAAGGTTGCCATCATGT 58.128 52.632 0.00 0.00 0.00 3.21
3093 9015 1.816074 TGTTTTCCGGAGAAATCCCG 58.184 50.000 9.32 0.00 41.55 5.14
3132 9054 5.485353 TCTTAGTCACCTTCACCATCTGAAT 59.515 40.000 0.00 0.00 38.26 2.57
3135 9057 4.288105 AGTCACCTTCACCATCTGAATCTT 59.712 41.667 0.00 0.00 38.26 2.40
3199 9121 7.701539 TCAAATGTGACTGCCATTAAAGTAT 57.298 32.000 0.00 0.00 32.40 2.12
3200 9122 7.537715 TCAAATGTGACTGCCATTAAAGTATG 58.462 34.615 0.00 0.00 32.40 2.39
3201 9123 7.176515 TCAAATGTGACTGCCATTAAAGTATGT 59.823 33.333 0.00 0.00 32.40 2.29
3202 9124 8.458052 CAAATGTGACTGCCATTAAAGTATGTA 58.542 33.333 0.00 0.00 32.40 2.29
3208 9138 8.682710 TGACTGCCATTAAAGTATGTAAATTCC 58.317 33.333 0.00 0.00 0.00 3.01
3215 9145 9.849166 CATTAAAGTATGTAAATTCCACGGTTT 57.151 29.630 0.00 0.00 0.00 3.27
3222 9152 5.856156 TGTAAATTCCACGGTTTACTCAGA 58.144 37.500 9.47 0.00 40.01 3.27
3224 9154 6.938030 TGTAAATTCCACGGTTTACTCAGAAT 59.062 34.615 9.47 0.00 40.01 2.40
3248 9178 4.223144 ACCTTTTGGCAGTTACTTGGATT 58.777 39.130 0.00 0.00 45.59 3.01
3289 9219 1.472662 CCTCTGTGGTCGTCAAGGGT 61.473 60.000 0.00 0.00 0.00 4.34
3313 9243 9.052759 GGTCGTGAACTTAATTATGGTATTGAT 57.947 33.333 3.66 0.00 0.00 2.57
3390 9320 3.626670 CCAGAAGAAATAGCTGCTCTTGG 59.373 47.826 4.91 0.00 29.59 3.61
3687 9620 0.675633 CCAAACAGTTGCCCTGGAAG 59.324 55.000 0.00 0.00 46.06 3.46
3789 9722 3.481453 GATTTATTCTGGGTCTCTGGGC 58.519 50.000 0.00 0.00 0.00 5.36
3908 9841 0.613012 ATGGAAAAGCTGGGCCAGAC 60.613 55.000 37.07 25.92 32.44 3.51
3931 9864 6.238648 ACAGGGAACTACAAATTGAGTAAGG 58.761 40.000 0.00 0.00 40.21 2.69
4256 10504 2.693267 AAGAGGAAACCCATACGCTC 57.307 50.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.745975 GGGCTGTTTATTTTGACTTTGCC 59.254 43.478 0.00 0.00 36.27 4.52
1 2 3.428534 CGGGCTGTTTATTTTGACTTTGC 59.571 43.478 0.00 0.00 0.00 3.68
2 3 3.987220 CCGGGCTGTTTATTTTGACTTTG 59.013 43.478 0.00 0.00 0.00 2.77
5 6 2.556622 CACCGGGCTGTTTATTTTGACT 59.443 45.455 6.32 0.00 0.00 3.41
6 7 2.295070 ACACCGGGCTGTTTATTTTGAC 59.705 45.455 6.32 0.00 0.00 3.18
7 8 2.554893 GACACCGGGCTGTTTATTTTGA 59.445 45.455 6.32 0.00 0.00 2.69
9 10 1.890489 GGACACCGGGCTGTTTATTTT 59.110 47.619 6.32 0.00 0.00 1.82
10 11 1.202952 TGGACACCGGGCTGTTTATTT 60.203 47.619 6.32 0.00 0.00 1.40
11 12 0.402504 TGGACACCGGGCTGTTTATT 59.597 50.000 6.32 0.00 0.00 1.40
12 13 0.322187 GTGGACACCGGGCTGTTTAT 60.322 55.000 6.32 0.00 0.00 1.40
13 14 1.071814 GTGGACACCGGGCTGTTTA 59.928 57.895 6.32 0.00 0.00 2.01
24 25 2.202756 GATCGCGAGGGTGGACAC 60.203 66.667 16.66 0.00 0.00 3.67
25 26 2.362503 AGATCGCGAGGGTGGACA 60.363 61.111 16.66 0.00 0.00 4.02
26 27 2.105128 CAGATCGCGAGGGTGGAC 59.895 66.667 16.66 0.00 0.00 4.02
268 269 2.154963 ACGACGAATCACATCACAAACG 59.845 45.455 0.00 0.00 0.00 3.60
269 270 3.788434 ACGACGAATCACATCACAAAC 57.212 42.857 0.00 0.00 0.00 2.93
272 273 3.057806 ACAGTACGACGAATCACATCACA 60.058 43.478 0.00 0.00 0.00 3.58
273 274 3.499048 ACAGTACGACGAATCACATCAC 58.501 45.455 0.00 0.00 0.00 3.06
275 276 4.017380 AGACAGTACGACGAATCACATC 57.983 45.455 0.00 0.00 0.00 3.06
277 278 3.072211 AGAGACAGTACGACGAATCACA 58.928 45.455 0.00 0.00 0.00 3.58
278 279 3.120269 ACAGAGACAGTACGACGAATCAC 60.120 47.826 0.00 0.00 0.00 3.06
280 281 3.124806 TGACAGAGACAGTACGACGAATC 59.875 47.826 0.00 0.00 0.00 2.52
281 282 3.072211 TGACAGAGACAGTACGACGAAT 58.928 45.455 0.00 0.00 0.00 3.34
283 284 2.159327 TGACAGAGACAGTACGACGA 57.841 50.000 0.00 0.00 0.00 4.20
285 286 3.846896 CGAAATGACAGAGACAGTACGAC 59.153 47.826 0.00 0.00 0.00 4.34
287 288 4.079665 TCGAAATGACAGAGACAGTACG 57.920 45.455 0.00 0.00 0.00 3.67
288 289 3.854809 GCTCGAAATGACAGAGACAGTAC 59.145 47.826 0.00 0.00 34.13 2.73
289 290 3.759086 AGCTCGAAATGACAGAGACAGTA 59.241 43.478 0.00 0.00 34.13 2.74
290 291 2.560542 AGCTCGAAATGACAGAGACAGT 59.439 45.455 0.00 0.00 34.13 3.55
291 292 3.229276 AGCTCGAAATGACAGAGACAG 57.771 47.619 0.00 0.00 34.13 3.51
292 293 3.667497 AAGCTCGAAATGACAGAGACA 57.333 42.857 0.00 0.00 34.13 3.41
293 294 4.109050 CCTAAGCTCGAAATGACAGAGAC 58.891 47.826 0.00 0.00 34.13 3.36
295 296 4.097135 TCTCCTAAGCTCGAAATGACAGAG 59.903 45.833 0.00 0.00 35.28 3.35
298 299 5.344743 AATCTCCTAAGCTCGAAATGACA 57.655 39.130 0.00 0.00 0.00 3.58
299 300 5.404066 GCTAATCTCCTAAGCTCGAAATGAC 59.596 44.000 0.00 0.00 33.40 3.06
300 301 5.533482 GCTAATCTCCTAAGCTCGAAATGA 58.467 41.667 0.00 0.00 33.40 2.57
301 302 4.384247 CGCTAATCTCCTAAGCTCGAAATG 59.616 45.833 0.00 0.00 34.03 2.32
302 303 4.551388 CGCTAATCTCCTAAGCTCGAAAT 58.449 43.478 0.00 0.00 34.03 2.17
303 304 3.795826 GCGCTAATCTCCTAAGCTCGAAA 60.796 47.826 0.00 0.00 34.03 3.46
304 305 2.287668 GCGCTAATCTCCTAAGCTCGAA 60.288 50.000 0.00 0.00 34.03 3.71
305 306 1.267261 GCGCTAATCTCCTAAGCTCGA 59.733 52.381 0.00 0.00 34.03 4.04
306 307 1.001268 TGCGCTAATCTCCTAAGCTCG 60.001 52.381 9.73 0.00 34.03 5.03
307 308 2.802787 TGCGCTAATCTCCTAAGCTC 57.197 50.000 9.73 0.00 34.03 4.09
308 309 2.896685 AGATGCGCTAATCTCCTAAGCT 59.103 45.455 9.73 0.00 30.91 3.74
309 310 3.311486 AGATGCGCTAATCTCCTAAGC 57.689 47.619 9.73 0.00 30.91 3.09
310 311 7.439655 AGTTTAAAGATGCGCTAATCTCCTAAG 59.560 37.037 9.73 0.00 35.83 2.18
311 312 7.272978 AGTTTAAAGATGCGCTAATCTCCTAA 58.727 34.615 9.73 8.26 35.83 2.69
312 313 6.817184 AGTTTAAAGATGCGCTAATCTCCTA 58.183 36.000 9.73 2.52 35.83 2.94
314 315 5.993106 AGTTTAAAGATGCGCTAATCTCC 57.007 39.130 9.73 0.00 35.83 3.71
316 317 9.331282 AGATAAAGTTTAAAGATGCGCTAATCT 57.669 29.630 9.73 6.70 38.59 2.40
317 318 9.587461 GAGATAAAGTTTAAAGATGCGCTAATC 57.413 33.333 9.73 3.94 0.00 1.75
318 319 9.331282 AGAGATAAAGTTTAAAGATGCGCTAAT 57.669 29.630 9.73 0.00 0.00 1.73
320 321 9.811995 TTAGAGATAAAGTTTAAAGATGCGCTA 57.188 29.630 9.73 0.00 0.00 4.26
321 322 8.718102 TTAGAGATAAAGTTTAAAGATGCGCT 57.282 30.769 9.73 0.00 0.00 5.92
322 323 9.937175 ATTTAGAGATAAAGTTTAAAGATGCGC 57.063 29.630 0.00 0.00 0.00 6.09
332 333 8.607459 CGATCAGCACATTTAGAGATAAAGTTT 58.393 33.333 0.00 0.00 0.00 2.66
333 334 7.981789 TCGATCAGCACATTTAGAGATAAAGTT 59.018 33.333 0.00 0.00 0.00 2.66
335 336 7.936950 TCGATCAGCACATTTAGAGATAAAG 57.063 36.000 0.00 0.00 0.00 1.85
337 338 7.386025 CCATTCGATCAGCACATTTAGAGATAA 59.614 37.037 0.00 0.00 0.00 1.75
338 339 6.870439 CCATTCGATCAGCACATTTAGAGATA 59.130 38.462 0.00 0.00 0.00 1.98
339 340 5.699915 CCATTCGATCAGCACATTTAGAGAT 59.300 40.000 0.00 0.00 0.00 2.75
341 342 4.813161 ACCATTCGATCAGCACATTTAGAG 59.187 41.667 0.00 0.00 0.00 2.43
342 343 4.769688 ACCATTCGATCAGCACATTTAGA 58.230 39.130 0.00 0.00 0.00 2.10
344 345 4.699735 ACAACCATTCGATCAGCACATTTA 59.300 37.500 0.00 0.00 0.00 1.40
345 346 3.507233 ACAACCATTCGATCAGCACATTT 59.493 39.130 0.00 0.00 0.00 2.32
346 347 3.084039 ACAACCATTCGATCAGCACATT 58.916 40.909 0.00 0.00 0.00 2.71
347 348 2.715046 ACAACCATTCGATCAGCACAT 58.285 42.857 0.00 0.00 0.00 3.21
350 351 6.112734 ACTTATTACAACCATTCGATCAGCA 58.887 36.000 0.00 0.00 0.00 4.41
351 352 6.604735 ACTTATTACAACCATTCGATCAGC 57.395 37.500 0.00 0.00 0.00 4.26
355 356 8.241367 GGTTCAAACTTATTACAACCATTCGAT 58.759 33.333 0.00 0.00 32.94 3.59
356 357 7.308710 GGGTTCAAACTTATTACAACCATTCGA 60.309 37.037 0.00 0.00 33.78 3.71
357 358 6.804783 GGGTTCAAACTTATTACAACCATTCG 59.195 38.462 0.00 0.00 33.78 3.34
358 359 7.892609 AGGGTTCAAACTTATTACAACCATTC 58.107 34.615 0.00 0.00 33.78 2.67
359 360 7.849322 AGGGTTCAAACTTATTACAACCATT 57.151 32.000 0.00 0.00 33.78 3.16
360 361 7.849322 AAGGGTTCAAACTTATTACAACCAT 57.151 32.000 0.00 0.00 33.78 3.55
361 362 7.663043 AAAGGGTTCAAACTTATTACAACCA 57.337 32.000 0.00 0.00 33.78 3.67
362 363 9.687210 CTAAAAGGGTTCAAACTTATTACAACC 57.313 33.333 0.00 0.00 32.33 3.77
367 368 9.250246 CCCATCTAAAAGGGTTCAAACTTATTA 57.750 33.333 0.00 0.00 40.34 0.98
368 369 7.180229 CCCCATCTAAAAGGGTTCAAACTTATT 59.820 37.037 0.00 0.00 43.89 1.40
369 370 6.667848 CCCCATCTAAAAGGGTTCAAACTTAT 59.332 38.462 0.00 0.00 43.89 1.73
372 373 4.416516 CCCCATCTAAAAGGGTTCAAACT 58.583 43.478 0.00 0.00 43.89 2.66
373 374 3.056107 GCCCCATCTAAAAGGGTTCAAAC 60.056 47.826 0.00 0.00 43.89 2.93
374 375 3.169908 GCCCCATCTAAAAGGGTTCAAA 58.830 45.455 0.00 0.00 43.89 2.69
375 376 2.381961 AGCCCCATCTAAAAGGGTTCAA 59.618 45.455 0.00 0.00 43.89 2.69
377 378 2.291605 ACAGCCCCATCTAAAAGGGTTC 60.292 50.000 0.00 0.00 43.89 3.62
378 379 1.716503 ACAGCCCCATCTAAAAGGGTT 59.283 47.619 0.00 0.00 43.89 4.11
379 380 1.382914 ACAGCCCCATCTAAAAGGGT 58.617 50.000 0.00 0.00 43.89 4.34
380 381 3.662759 TTACAGCCCCATCTAAAAGGG 57.337 47.619 0.00 0.00 45.04 3.95
381 382 5.300286 CAGATTTACAGCCCCATCTAAAAGG 59.700 44.000 0.00 0.00 0.00 3.11
382 383 6.038714 GTCAGATTTACAGCCCCATCTAAAAG 59.961 42.308 0.00 0.00 0.00 2.27
383 384 5.885912 GTCAGATTTACAGCCCCATCTAAAA 59.114 40.000 0.00 0.00 0.00 1.52
387 388 3.118531 AGTCAGATTTACAGCCCCATCT 58.881 45.455 0.00 0.00 0.00 2.90
388 389 3.135530 AGAGTCAGATTTACAGCCCCATC 59.864 47.826 0.00 0.00 0.00 3.51
389 390 3.118112 CAGAGTCAGATTTACAGCCCCAT 60.118 47.826 0.00 0.00 0.00 4.00
396 397 6.768483 TGAAACCATCAGAGTCAGATTTACA 58.232 36.000 0.00 0.00 33.04 2.41
397 398 7.856145 ATGAAACCATCAGAGTCAGATTTAC 57.144 36.000 0.00 0.00 42.53 2.01
399 400 6.093219 CGAATGAAACCATCAGAGTCAGATTT 59.907 38.462 0.00 0.00 42.53 2.17
400 401 5.583854 CGAATGAAACCATCAGAGTCAGATT 59.416 40.000 0.00 0.00 42.53 2.40
401 402 5.114780 CGAATGAAACCATCAGAGTCAGAT 58.885 41.667 0.00 0.00 42.53 2.90
403 404 4.248859 ACGAATGAAACCATCAGAGTCAG 58.751 43.478 0.00 0.00 42.53 3.51
404 405 4.271696 ACGAATGAAACCATCAGAGTCA 57.728 40.909 0.00 0.00 42.53 3.41
405 406 6.721571 TTAACGAATGAAACCATCAGAGTC 57.278 37.500 0.00 0.00 42.53 3.36
406 407 6.094048 CCATTAACGAATGAAACCATCAGAGT 59.906 38.462 0.00 0.00 44.59 3.24
407 408 6.316140 TCCATTAACGAATGAAACCATCAGAG 59.684 38.462 0.00 0.00 44.59 3.35
409 410 6.435430 TCCATTAACGAATGAAACCATCAG 57.565 37.500 0.00 0.00 44.59 2.90
411 412 5.273944 GCTCCATTAACGAATGAAACCATC 58.726 41.667 0.00 0.00 44.59 3.51
412 413 4.097892 GGCTCCATTAACGAATGAAACCAT 59.902 41.667 0.00 0.00 44.59 3.55
413 414 3.442273 GGCTCCATTAACGAATGAAACCA 59.558 43.478 0.00 0.00 44.59 3.67
414 415 3.486875 CGGCTCCATTAACGAATGAAACC 60.487 47.826 0.00 0.00 44.59 3.27
415 416 3.486875 CCGGCTCCATTAACGAATGAAAC 60.487 47.826 0.00 0.00 44.59 2.78
416 417 2.680841 CCGGCTCCATTAACGAATGAAA 59.319 45.455 0.00 0.00 44.59 2.69
417 418 2.285083 CCGGCTCCATTAACGAATGAA 58.715 47.619 0.00 0.00 44.59 2.57
418 419 1.474320 CCCGGCTCCATTAACGAATGA 60.474 52.381 0.00 0.00 44.59 2.57
419 420 0.944386 CCCGGCTCCATTAACGAATG 59.056 55.000 0.00 0.00 41.94 2.67
420 421 0.179029 CCCCGGCTCCATTAACGAAT 60.179 55.000 0.00 0.00 0.00 3.34
421 422 1.222387 CCCCGGCTCCATTAACGAA 59.778 57.895 0.00 0.00 0.00 3.85
422 423 1.682451 CTCCCCGGCTCCATTAACGA 61.682 60.000 0.00 0.00 0.00 3.85
423 424 1.227556 CTCCCCGGCTCCATTAACG 60.228 63.158 0.00 0.00 0.00 3.18
424 425 0.106894 CTCTCCCCGGCTCCATTAAC 59.893 60.000 0.00 0.00 0.00 2.01
425 426 1.054406 CCTCTCCCCGGCTCCATTAA 61.054 60.000 0.00 0.00 0.00 1.40
427 428 2.770048 CCTCTCCCCGGCTCCATT 60.770 66.667 0.00 0.00 0.00 3.16
439 440 0.467804 GATGAACAGGGAGGCCTCTC 59.532 60.000 31.36 29.07 39.25 3.20
440 441 0.043940 AGATGAACAGGGAGGCCTCT 59.956 55.000 31.36 12.27 0.00 3.69
441 442 1.794714 TAGATGAACAGGGAGGCCTC 58.205 55.000 25.59 25.59 0.00 4.70
442 443 2.270434 TTAGATGAACAGGGAGGCCT 57.730 50.000 3.86 3.86 0.00 5.19
443 444 3.366052 TTTTAGATGAACAGGGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
463 464 6.833933 GTCCAGGGTCCACATAGAAATATTTT 59.166 38.462 1.43 0.00 0.00 1.82
464 465 6.365520 GTCCAGGGTCCACATAGAAATATTT 58.634 40.000 0.00 0.00 0.00 1.40
465 466 5.163088 GGTCCAGGGTCCACATAGAAATATT 60.163 44.000 0.00 0.00 0.00 1.28
466 467 4.351111 GGTCCAGGGTCCACATAGAAATAT 59.649 45.833 0.00 0.00 0.00 1.28
467 468 3.714798 GGTCCAGGGTCCACATAGAAATA 59.285 47.826 0.00 0.00 0.00 1.40
468 469 2.509964 GGTCCAGGGTCCACATAGAAAT 59.490 50.000 0.00 0.00 0.00 2.17
471 472 0.716591 AGGTCCAGGGTCCACATAGA 59.283 55.000 4.44 0.00 0.00 1.98
472 473 0.833287 CAGGTCCAGGGTCCACATAG 59.167 60.000 4.44 0.00 0.00 2.23
473 474 1.271840 GCAGGTCCAGGGTCCACATA 61.272 60.000 4.44 0.00 0.00 2.29
474 475 2.606587 GCAGGTCCAGGGTCCACAT 61.607 63.158 4.44 0.00 0.00 3.21
475 476 3.249189 GCAGGTCCAGGGTCCACA 61.249 66.667 4.44 0.00 0.00 4.17
476 477 4.035102 GGCAGGTCCAGGGTCCAC 62.035 72.222 4.44 0.00 34.01 4.02
491 492 1.936436 TTGTGATGATTGCGGCTGGC 61.936 55.000 0.00 0.00 43.96 4.85
492 493 0.179156 GTTGTGATGATTGCGGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
493 494 0.521867 CGTTGTGATGATTGCGGCTG 60.522 55.000 0.00 0.00 0.00 4.85
494 495 0.673333 TCGTTGTGATGATTGCGGCT 60.673 50.000 0.00 0.00 0.00 5.52
496 497 2.708514 GATTCGTTGTGATGATTGCGG 58.291 47.619 0.00 0.00 0.00 5.69
498 499 2.104144 GCGATTCGTTGTGATGATTGC 58.896 47.619 8.03 0.00 0.00 3.56
499 500 3.388149 TGCGATTCGTTGTGATGATTG 57.612 42.857 8.03 0.00 0.00 2.67
500 501 4.154015 TCTTTGCGATTCGTTGTGATGATT 59.846 37.500 8.03 0.00 0.00 2.57
501 502 3.684305 TCTTTGCGATTCGTTGTGATGAT 59.316 39.130 8.03 0.00 0.00 2.45
503 504 3.454042 TCTTTGCGATTCGTTGTGATG 57.546 42.857 8.03 0.00 0.00 3.07
504 505 3.436704 ACATCTTTGCGATTCGTTGTGAT 59.563 39.130 8.03 4.77 0.00 3.06
505 506 2.805671 ACATCTTTGCGATTCGTTGTGA 59.194 40.909 8.03 2.67 0.00 3.58
507 508 3.994392 AGTACATCTTTGCGATTCGTTGT 59.006 39.130 8.03 5.35 0.00 3.32
509 510 3.370978 CCAGTACATCTTTGCGATTCGTT 59.629 43.478 8.03 0.00 0.00 3.85
510 511 2.930040 CCAGTACATCTTTGCGATTCGT 59.070 45.455 8.03 0.00 0.00 3.85
511 512 3.000322 GTCCAGTACATCTTTGCGATTCG 60.000 47.826 0.62 0.62 0.00 3.34
512 513 3.000322 CGTCCAGTACATCTTTGCGATTC 60.000 47.826 0.00 0.00 0.00 2.52
513 514 2.930040 CGTCCAGTACATCTTTGCGATT 59.070 45.455 0.00 0.00 0.00 3.34
514 515 2.540515 CGTCCAGTACATCTTTGCGAT 58.459 47.619 0.00 0.00 0.00 4.58
516 517 0.999406 CCGTCCAGTACATCTTTGCG 59.001 55.000 0.00 0.00 0.00 4.85
517 518 1.369625 CCCGTCCAGTACATCTTTGC 58.630 55.000 0.00 0.00 0.00 3.68
518 519 1.278127 ACCCCGTCCAGTACATCTTTG 59.722 52.381 0.00 0.00 0.00 2.77
520 521 2.024655 TCTACCCCGTCCAGTACATCTT 60.025 50.000 0.00 0.00 0.00 2.40
521 522 1.567649 TCTACCCCGTCCAGTACATCT 59.432 52.381 0.00 0.00 0.00 2.90
522 523 2.062971 TCTACCCCGTCCAGTACATC 57.937 55.000 0.00 0.00 0.00 3.06
524 525 2.537633 AATCTACCCCGTCCAGTACA 57.462 50.000 0.00 0.00 0.00 2.90
525 526 2.223665 CGAAATCTACCCCGTCCAGTAC 60.224 54.545 0.00 0.00 0.00 2.73
527 528 0.822164 CGAAATCTACCCCGTCCAGT 59.178 55.000 0.00 0.00 0.00 4.00
528 529 1.067212 CTCGAAATCTACCCCGTCCAG 59.933 57.143 0.00 0.00 0.00 3.86
529 530 1.108776 CTCGAAATCTACCCCGTCCA 58.891 55.000 0.00 0.00 0.00 4.02
530 531 0.249363 GCTCGAAATCTACCCCGTCC 60.249 60.000 0.00 0.00 0.00 4.79
531 532 0.745468 AGCTCGAAATCTACCCCGTC 59.255 55.000 0.00 0.00 0.00 4.79
533 534 0.032267 GGAGCTCGAAATCTACCCCG 59.968 60.000 7.83 0.00 0.00 5.73
534 535 1.069358 CAGGAGCTCGAAATCTACCCC 59.931 57.143 7.83 0.00 0.00 4.95
535 536 1.757699 ACAGGAGCTCGAAATCTACCC 59.242 52.381 7.83 0.00 0.00 3.69
536 537 2.427453 TCACAGGAGCTCGAAATCTACC 59.573 50.000 7.83 0.00 0.00 3.18
537 538 3.701241 CTCACAGGAGCTCGAAATCTAC 58.299 50.000 7.83 0.00 33.67 2.59
549 550 0.813821 TGATCACGAGCTCACAGGAG 59.186 55.000 15.40 0.00 44.33 3.69
550 551 0.528017 GTGATCACGAGCTCACAGGA 59.472 55.000 15.40 5.33 39.91 3.86
551 552 0.244721 TGTGATCACGAGCTCACAGG 59.755 55.000 20.54 0.00 43.68 4.00
554 555 3.367607 GAGTATGTGATCACGAGCTCAC 58.632 50.000 25.26 9.49 40.42 3.51
555 556 2.359214 GGAGTATGTGATCACGAGCTCA 59.641 50.000 28.30 12.66 31.30 4.26
556 557 2.359214 TGGAGTATGTGATCACGAGCTC 59.641 50.000 23.58 23.58 0.00 4.09
558 559 2.464865 GTGGAGTATGTGATCACGAGC 58.535 52.381 20.54 12.34 0.00 5.03
562 563 2.165641 TGGACGTGGAGTATGTGATCAC 59.834 50.000 19.27 19.27 0.00 3.06
564 565 2.427453 AGTGGACGTGGAGTATGTGATC 59.573 50.000 0.00 0.00 0.00 2.92
565 566 2.457598 AGTGGACGTGGAGTATGTGAT 58.542 47.619 0.00 0.00 0.00 3.06
566 567 1.919240 AGTGGACGTGGAGTATGTGA 58.081 50.000 0.00 0.00 0.00 3.58
569 570 2.492088 TGAGAAGTGGACGTGGAGTATG 59.508 50.000 0.00 0.00 0.00 2.39
571 572 2.160205 CTGAGAAGTGGACGTGGAGTA 58.840 52.381 0.00 0.00 0.00 2.59
572 573 0.962489 CTGAGAAGTGGACGTGGAGT 59.038 55.000 0.00 0.00 0.00 3.85
573 574 1.201181 CTCTGAGAAGTGGACGTGGAG 59.799 57.143 0.00 0.00 0.00 3.86
575 576 1.068194 GTCTCTGAGAAGTGGACGTGG 60.068 57.143 9.31 0.00 0.00 4.94
578 579 2.294791 AGTTGTCTCTGAGAAGTGGACG 59.705 50.000 9.31 0.00 0.00 4.79
579 580 4.278669 TGTAGTTGTCTCTGAGAAGTGGAC 59.721 45.833 9.31 6.20 0.00 4.02
580 581 4.470602 TGTAGTTGTCTCTGAGAAGTGGA 58.529 43.478 9.31 0.00 0.00 4.02
581 582 4.804108 CTGTAGTTGTCTCTGAGAAGTGG 58.196 47.826 9.31 0.00 0.00 4.00
592 3098 3.134804 AGTCCTTGTTGCTGTAGTTGTCT 59.865 43.478 0.00 0.00 0.00 3.41
600 3106 5.652452 AGTTTCTTTTAGTCCTTGTTGCTGT 59.348 36.000 0.00 0.00 0.00 4.40
763 3281 1.067776 GTCTACTTGTGACAGTCCCCG 60.068 57.143 0.00 0.00 34.80 5.73
790 3308 0.754957 CCACACAAACTCCAAGGCCA 60.755 55.000 5.01 0.00 0.00 5.36
821 3339 2.617274 GGGCAAGTTCACGTCAGGC 61.617 63.158 0.00 0.00 0.00 4.85
875 3413 1.968540 GCAGACTGGCAACCTGACC 60.969 63.158 16.89 0.46 0.00 4.02
937 3491 6.909550 AGTGGAGTTTATGGCAATTGTAAA 57.090 33.333 7.40 1.70 0.00 2.01
1141 3707 2.039974 TGATGCCGCGCTTGAATGT 61.040 52.632 5.56 0.00 0.00 2.71
1143 3709 2.764314 GGTGATGCCGCGCTTGAAT 61.764 57.895 5.56 0.00 0.00 2.57
1256 3842 5.358442 ACATACAGACTACGAAGATCAAGCT 59.642 40.000 0.00 0.00 0.00 3.74
1283 3869 3.366724 TGTGTCGTACTCATCGAAAATGC 59.633 43.478 0.00 0.00 39.01 3.56
1287 3873 2.228103 AGCTGTGTCGTACTCATCGAAA 59.772 45.455 0.00 0.00 39.01 3.46
1327 3946 3.497640 CGATCCATGGAGAGCAAAGAATC 59.502 47.826 21.33 7.55 0.00 2.52
1450 4072 0.385390 CCAGAAAATGGTATGCCGGC 59.615 55.000 22.73 22.73 44.91 6.13
1481 4103 0.976641 TGAGAGGTTGCCGAGTTGAT 59.023 50.000 0.00 0.00 0.00 2.57
1519 4141 7.147949 GGTTTCTCCATCAAATTGACATGAGAT 60.148 37.037 16.44 0.00 31.86 2.75
1527 4149 8.365060 ACATATTGGTTTCTCCATCAAATTGA 57.635 30.769 0.00 0.00 46.60 2.57
1537 4159 8.831550 GTCTCTTGAATACATATTGGTTTCTCC 58.168 37.037 0.00 0.00 0.00 3.71
1538 4160 9.383519 TGTCTCTTGAATACATATTGGTTTCTC 57.616 33.333 0.00 0.00 0.00 2.87
1624 4246 1.340088 AGCCAATCAACCATTGTGCA 58.660 45.000 9.16 0.00 40.51 4.57
1632 4254 5.132897 TCACAACATAAAGCCAATCAACC 57.867 39.130 0.00 0.00 0.00 3.77
1653 4275 5.405797 GCCTTCAAAGAAGGAATCATGTTC 58.594 41.667 25.64 4.66 39.81 3.18
1705 4327 4.953667 TGTGAGAGTGAATGATCTATGGC 58.046 43.478 0.00 0.00 0.00 4.40
1711 4333 9.553064 AAGGTTAATATGTGAGAGTGAATGATC 57.447 33.333 0.00 0.00 0.00 2.92
1723 4345 7.613585 TCGAGTTTGGTAAGGTTAATATGTGA 58.386 34.615 0.00 0.00 0.00 3.58
1751 4373 0.391661 GTTGCCGGAGAGATCAAGCA 60.392 55.000 5.05 0.00 0.00 3.91
1836 4458 0.669077 CGTATAACTGAGCTCCGCCT 59.331 55.000 12.15 0.00 0.00 5.52
1838 4460 0.384669 ACCGTATAACTGAGCTCCGC 59.615 55.000 12.15 0.00 0.00 5.54
1843 4465 3.445857 GAGGTTGACCGTATAACTGAGC 58.554 50.000 0.00 0.00 42.08 4.26
1849 4471 3.181469 GCATCAGGAGGTTGACCGTATAA 60.181 47.826 0.00 0.00 42.08 0.98
1965 4590 6.842676 ACAAGAAGAAAGGTACAGGATTCTT 58.157 36.000 11.71 11.71 42.95 2.52
1975 4600 7.723616 TCCATCAATTTGACAAGAAGAAAGGTA 59.276 33.333 0.15 0.00 0.00 3.08
2175 4800 3.392228 CTAGTGAGCAGCCCCACA 58.608 61.111 15.50 3.93 35.84 4.17
2193 4818 4.405116 AGAGAGATCAAGGCTGCTTAAG 57.595 45.455 0.00 0.00 0.00 1.85
2216 4841 4.437239 CACATGTCCACTGAGATAGTTCC 58.563 47.826 0.00 0.00 37.60 3.62
2217 4842 3.868077 GCACATGTCCACTGAGATAGTTC 59.132 47.826 0.00 0.00 37.60 3.01
2234 4859 1.489230 TGCTGATCTCAGATGGCACAT 59.511 47.619 11.34 0.00 46.59 3.21
2251 4876 1.345089 TGTCAAATTGCCAAGCATGCT 59.655 42.857 16.30 16.30 38.76 3.79
2271 4968 3.135530 GGTTGCCTCTGAGATCCATTACT 59.864 47.826 6.17 0.00 0.00 2.24
2272 4969 3.118261 TGGTTGCCTCTGAGATCCATTAC 60.118 47.826 6.17 0.00 0.00 1.89
2293 4990 5.694231 TCAGTCAAATCACCATTGAAGTG 57.306 39.130 0.00 0.00 38.44 3.16
2298 4995 6.075762 TGTTCTTCAGTCAAATCACCATTG 57.924 37.500 0.00 0.00 0.00 2.82
2310 5007 9.865484 GTTAGACTTGTAAAATGTTCTTCAGTC 57.135 33.333 0.00 0.00 0.00 3.51
2354 5051 6.054860 TCCTCAAGGGATTCTCACTTAAAG 57.945 41.667 0.00 0.00 38.22 1.85
2368 5065 3.721087 ACCAACTGTAATCCTCAAGGG 57.279 47.619 0.00 0.00 35.41 3.95
2420 5117 0.729690 GCAAGAGCCAAGATCCGTTC 59.270 55.000 0.00 0.00 33.58 3.95
2506 5204 3.005897 AGCCTATCAACTATACCTGTGCG 59.994 47.826 0.00 0.00 0.00 5.34
2599 5297 3.574284 TTCCATGTTTCTTGGCAATCG 57.426 42.857 0.00 0.00 34.06 3.34
2640 5338 7.299586 CGGTTAGTTTATTTGAATTGACGGAA 58.700 34.615 0.00 0.00 0.00 4.30
2643 5341 6.521821 CACCGGTTAGTTTATTTGAATTGACG 59.478 38.462 2.97 0.00 0.00 4.35
2644 5342 7.586747 TCACCGGTTAGTTTATTTGAATTGAC 58.413 34.615 2.97 0.00 0.00 3.18
2690 5388 5.128827 TCAGACATGTCCAGGAAGGTAATAC 59.871 44.000 22.21 0.00 39.02 1.89
2732 5430 3.390639 AGTCCCAATGTTTGATGGCAAAA 59.609 39.130 0.00 0.00 44.91 2.44
2760 5458 8.481492 TGGATACCAGCAATAATGAAATCAAT 57.519 30.769 0.00 0.00 0.00 2.57
2781 5479 3.202818 TGCCACCAGTTATCTGATTGGAT 59.797 43.478 18.65 0.00 42.32 3.41
2790 5488 2.435372 TGGGAATGCCACCAGTTATC 57.565 50.000 0.00 0.00 35.15 1.75
2800 5498 2.234414 TGCAAAGAGATTTGGGAATGCC 59.766 45.455 3.17 0.00 32.78 4.40
2802 5500 4.390909 GCTTTGCAAAGAGATTTGGGAATG 59.609 41.667 37.14 11.50 38.28 2.67
2817 5515 1.363443 CAAGGCTTCCGCTTTGCAA 59.637 52.632 0.00 0.00 44.54 4.08
2850 5548 1.606606 CCTCGAAAAGATTGTTGCGC 58.393 50.000 0.00 0.00 0.00 6.09
2851 5549 1.804151 TCCCTCGAAAAGATTGTTGCG 59.196 47.619 0.00 0.00 0.00 4.85
2978 8900 5.637006 ATTGCGTGATAGATCTAGAGACC 57.363 43.478 8.70 0.00 0.00 3.85
3002 8924 1.710816 TGGCAACCTTCCGGAAAAAT 58.289 45.000 19.39 3.36 0.00 1.82
3023 8945 9.520204 GTAATTCAACCAAATCTCCAATACATG 57.480 33.333 0.00 0.00 0.00 3.21
3024 8946 8.405531 CGTAATTCAACCAAATCTCCAATACAT 58.594 33.333 0.00 0.00 0.00 2.29
3027 8949 8.746052 ATCGTAATTCAACCAAATCTCCAATA 57.254 30.769 0.00 0.00 0.00 1.90
3093 9015 3.879892 GACTAAGATTTGAGATGGTGCCC 59.120 47.826 0.00 0.00 0.00 5.36
3132 9054 2.026641 GATAAGCCATTGCCTGCAAGA 58.973 47.619 10.64 0.00 39.47 3.02
3135 9057 1.395635 CTGATAAGCCATTGCCTGCA 58.604 50.000 0.00 0.00 38.69 4.41
3186 9108 7.415765 CCGTGGAATTTACATACTTTAATGGCA 60.416 37.037 0.00 0.00 0.00 4.92
3192 9114 9.723601 AGTAAACCGTGGAATTTACATACTTTA 57.276 29.630 12.15 0.00 41.65 1.85
3194 9116 7.879160 TGAGTAAACCGTGGAATTTACATACTT 59.121 33.333 12.15 0.00 41.65 2.24
3197 9119 7.613585 TCTGAGTAAACCGTGGAATTTACATA 58.386 34.615 12.15 3.36 41.65 2.29
3199 9121 5.856156 TCTGAGTAAACCGTGGAATTTACA 58.144 37.500 12.15 0.00 41.65 2.41
3200 9122 6.790285 TTCTGAGTAAACCGTGGAATTTAC 57.210 37.500 0.00 0.00 40.21 2.01
3201 9123 7.989416 AATTCTGAGTAAACCGTGGAATTTA 57.011 32.000 0.00 0.00 30.86 1.40
3202 9124 6.894339 AATTCTGAGTAAACCGTGGAATTT 57.106 33.333 0.00 0.00 30.86 1.82
3208 9138 6.796705 AAAGGTAATTCTGAGTAAACCGTG 57.203 37.500 0.00 0.00 32.18 4.94
3215 9145 5.876357 ACTGCCAAAAGGTAATTCTGAGTA 58.124 37.500 0.00 0.00 0.00 2.59
3222 9152 5.836358 TCCAAGTAACTGCCAAAAGGTAATT 59.164 36.000 0.00 0.00 28.04 1.40
3224 9154 4.794334 TCCAAGTAACTGCCAAAAGGTAA 58.206 39.130 0.00 0.00 0.00 2.85
3257 9187 6.086222 CGACCACAGAGGAAAAATAATGTTG 58.914 40.000 0.00 0.00 41.22 3.33
3258 9188 5.768164 ACGACCACAGAGGAAAAATAATGTT 59.232 36.000 0.00 0.00 41.22 2.71
3313 9243 7.062322 AGTCAATGCTCACCATATCCAAAATA 58.938 34.615 0.00 0.00 32.67 1.40
3357 9287 6.158695 AGCTATTTCTTCTGGTATTCTCCCAA 59.841 38.462 0.00 0.00 0.00 4.12
3390 9320 6.841286 CGATAGATTCAAGTTTATCAACGCAC 59.159 38.462 0.00 0.00 36.57 5.34
3687 9620 4.678509 TCGTCTTGCATTGTTACATTCC 57.321 40.909 0.00 0.00 0.00 3.01
3789 9722 2.542907 AACAAGGCGCAGAACACCG 61.543 57.895 10.83 0.00 0.00 4.94
3908 9841 6.472887 TCCTTACTCAATTTGTAGTTCCCTG 58.527 40.000 6.76 0.00 0.00 4.45
3931 9864 1.135915 TCATGCTTCTTCGGAGCTCTC 59.864 52.381 14.64 2.76 0.00 3.20
4026 9964 9.309516 GGAGTTCAAAAGTATTATCATACACGA 57.690 33.333 0.11 0.00 38.24 4.35
4205 10453 9.214957 CATCCAGTACTCTACTAGATAACAGAG 57.785 40.741 0.00 2.98 35.44 3.35
4256 10504 8.461222 TGAAACTAATGAGCATATTCCAAAGTG 58.539 33.333 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.