Multiple sequence alignment - TraesCS4A01G482900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G482900 | chr4A | 100.000 | 3285 | 0 | 0 | 1 | 3285 | 737943611 | 737946895 | 0.000000e+00 | 6067.0 |
1 | TraesCS4A01G482900 | chr4A | 89.300 | 2701 | 175 | 52 | 106 | 2760 | 737739445 | 737736813 | 0.000000e+00 | 3282.0 |
2 | TraesCS4A01G482900 | chr4A | 84.074 | 2047 | 234 | 48 | 1002 | 2998 | 738669906 | 738671910 | 0.000000e+00 | 1890.0 |
3 | TraesCS4A01G482900 | chr4A | 80.452 | 1417 | 225 | 30 | 824 | 2221 | 738719599 | 738718216 | 0.000000e+00 | 1035.0 |
4 | TraesCS4A01G482900 | chr4A | 76.969 | 1168 | 220 | 29 | 1062 | 2211 | 737829387 | 737828251 | 3.600000e-174 | 621.0 |
5 | TraesCS4A01G482900 | chr4A | 76.901 | 1065 | 215 | 17 | 1109 | 2173 | 738710781 | 738711814 | 2.840000e-160 | 575.0 |
6 | TraesCS4A01G482900 | chr4A | 83.415 | 205 | 32 | 1 | 2088 | 2292 | 738533322 | 738533120 | 4.330000e-44 | 189.0 |
7 | TraesCS4A01G482900 | chr4A | 94.737 | 38 | 2 | 0 | 28 | 65 | 296323180 | 296323217 | 3.540000e-05 | 60.2 |
8 | TraesCS4A01G482900 | chr7A | 91.304 | 1265 | 104 | 2 | 1010 | 2274 | 4993607 | 4992349 | 0.000000e+00 | 1722.0 |
9 | TraesCS4A01G482900 | chr7A | 85.714 | 1512 | 118 | 37 | 346 | 1831 | 5053492 | 5052053 | 0.000000e+00 | 1506.0 |
10 | TraesCS4A01G482900 | chr7A | 80.418 | 1435 | 216 | 40 | 800 | 2221 | 4974705 | 4973323 | 0.000000e+00 | 1033.0 |
11 | TraesCS4A01G482900 | chr7A | 77.717 | 1472 | 238 | 49 | 1012 | 2446 | 5910604 | 5912022 | 0.000000e+00 | 819.0 |
12 | TraesCS4A01G482900 | chr7A | 85.160 | 721 | 64 | 28 | 1826 | 2515 | 5051933 | 5051225 | 0.000000e+00 | 699.0 |
13 | TraesCS4A01G482900 | chr7A | 78.591 | 1121 | 173 | 41 | 1105 | 2211 | 5430050 | 5428983 | 0.000000e+00 | 678.0 |
14 | TraesCS4A01G482900 | chr7A | 92.908 | 282 | 16 | 4 | 3004 | 3285 | 5233307 | 5233584 | 1.100000e-109 | 407.0 |
15 | TraesCS4A01G482900 | chr7A | 92.553 | 282 | 16 | 4 | 3004 | 3285 | 5263306 | 5263582 | 1.840000e-107 | 399.0 |
16 | TraesCS4A01G482900 | chr7A | 92.199 | 282 | 16 | 4 | 3004 | 3285 | 5250506 | 5250781 | 8.540000e-106 | 394.0 |
17 | TraesCS4A01G482900 | chr7A | 87.857 | 280 | 33 | 1 | 1983 | 2262 | 5440836 | 5441114 | 8.790000e-86 | 327.0 |
18 | TraesCS4A01G482900 | chr7A | 84.472 | 161 | 14 | 9 | 2339 | 2491 | 4992113 | 4991956 | 7.340000e-32 | 148.0 |
19 | TraesCS4A01G482900 | chr7A | 91.935 | 62 | 5 | 0 | 2517 | 2578 | 4991856 | 4991795 | 1.620000e-13 | 87.9 |
20 | TraesCS4A01G482900 | chr1D | 78.182 | 275 | 16 | 22 | 763 | 1037 | 394703011 | 394703241 | 5.720000e-28 | 135.0 |
21 | TraesCS4A01G482900 | chr2B | 75.636 | 275 | 19 | 24 | 763 | 1032 | 235073445 | 235073214 | 3.490000e-15 | 93.5 |
22 | TraesCS4A01G482900 | chr6D | 100.000 | 34 | 0 | 0 | 28 | 61 | 136722364 | 136722331 | 2.740000e-06 | 63.9 |
23 | TraesCS4A01G482900 | chr3D | 91.667 | 48 | 1 | 2 | 15 | 61 | 611580795 | 611580750 | 2.740000e-06 | 63.9 |
24 | TraesCS4A01G482900 | chr2A | 97.143 | 35 | 1 | 0 | 28 | 62 | 34674927 | 34674961 | 3.540000e-05 | 60.2 |
25 | TraesCS4A01G482900 | chr5A | 94.118 | 34 | 2 | 0 | 28 | 61 | 337827684 | 337827717 | 6.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G482900 | chr4A | 737943611 | 737946895 | 3284 | False | 6067.000000 | 6067 | 100.000 | 1 | 3285 | 1 | chr4A.!!$F2 | 3284 |
1 | TraesCS4A01G482900 | chr4A | 737736813 | 737739445 | 2632 | True | 3282.000000 | 3282 | 89.300 | 106 | 2760 | 1 | chr4A.!!$R1 | 2654 |
2 | TraesCS4A01G482900 | chr4A | 738669906 | 738671910 | 2004 | False | 1890.000000 | 1890 | 84.074 | 1002 | 2998 | 1 | chr4A.!!$F3 | 1996 |
3 | TraesCS4A01G482900 | chr4A | 738718216 | 738719599 | 1383 | True | 1035.000000 | 1035 | 80.452 | 824 | 2221 | 1 | chr4A.!!$R4 | 1397 |
4 | TraesCS4A01G482900 | chr4A | 737828251 | 737829387 | 1136 | True | 621.000000 | 621 | 76.969 | 1062 | 2211 | 1 | chr4A.!!$R2 | 1149 |
5 | TraesCS4A01G482900 | chr4A | 738710781 | 738711814 | 1033 | False | 575.000000 | 575 | 76.901 | 1109 | 2173 | 1 | chr4A.!!$F4 | 1064 |
6 | TraesCS4A01G482900 | chr7A | 5051225 | 5053492 | 2267 | True | 1102.500000 | 1506 | 85.437 | 346 | 2515 | 2 | chr7A.!!$R4 | 2169 |
7 | TraesCS4A01G482900 | chr7A | 4973323 | 4974705 | 1382 | True | 1033.000000 | 1033 | 80.418 | 800 | 2221 | 1 | chr7A.!!$R1 | 1421 |
8 | TraesCS4A01G482900 | chr7A | 5910604 | 5912022 | 1418 | False | 819.000000 | 819 | 77.717 | 1012 | 2446 | 1 | chr7A.!!$F5 | 1434 |
9 | TraesCS4A01G482900 | chr7A | 5428983 | 5430050 | 1067 | True | 678.000000 | 678 | 78.591 | 1105 | 2211 | 1 | chr7A.!!$R2 | 1106 |
10 | TraesCS4A01G482900 | chr7A | 4991795 | 4993607 | 1812 | True | 652.633333 | 1722 | 89.237 | 1010 | 2578 | 3 | chr7A.!!$R3 | 1568 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
885 | 968 | 0.30776 | CGCTGTGTTTCCTGTCAACC | 59.692 | 55.0 | 0.0 | 0.0 | 0.0 | 3.77 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2490 | 3043 | 1.143305 | CAGTCAGCAGAAGGAACGTG | 58.857 | 55.0 | 0.0 | 0.0 | 0.0 | 4.49 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 9.992910 | CCGTAAAGGAATATAAAAAGTGTTACC | 57.007 | 33.333 | 0.00 | 0.00 | 45.00 | 2.85 |
67 | 68 | 8.843885 | TTTCTTTAAAGAGGGAGTAGTTTAGC | 57.156 | 34.615 | 17.05 | 0.00 | 36.22 | 3.09 |
68 | 69 | 7.549147 | TCTTTAAAGAGGGAGTAGTTTAGCA | 57.451 | 36.000 | 13.99 | 0.00 | 0.00 | 3.49 |
69 | 70 | 7.612677 | TCTTTAAAGAGGGAGTAGTTTAGCAG | 58.387 | 38.462 | 13.99 | 0.00 | 0.00 | 4.24 |
70 | 71 | 6.930068 | TTAAAGAGGGAGTAGTTTAGCAGT | 57.070 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
71 | 72 | 8.426569 | TTTAAAGAGGGAGTAGTTTAGCAGTA | 57.573 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
72 | 73 | 6.930068 | AAAGAGGGAGTAGTTTAGCAGTAA | 57.070 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
73 | 74 | 5.918426 | AGAGGGAGTAGTTTAGCAGTAAC | 57.082 | 43.478 | 0.00 | 0.00 | 0.00 | 2.50 |
74 | 75 | 5.331069 | AGAGGGAGTAGTTTAGCAGTAACA | 58.669 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
75 | 76 | 5.958987 | AGAGGGAGTAGTTTAGCAGTAACAT | 59.041 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
76 | 77 | 6.440965 | AGAGGGAGTAGTTTAGCAGTAACATT | 59.559 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
77 | 78 | 7.017319 | AGGGAGTAGTTTAGCAGTAACATTT | 57.983 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
78 | 79 | 8.142485 | AGGGAGTAGTTTAGCAGTAACATTTA | 57.858 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
79 | 80 | 8.769359 | AGGGAGTAGTTTAGCAGTAACATTTAT | 58.231 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
80 | 81 | 8.827677 | GGGAGTAGTTTAGCAGTAACATTTATG | 58.172 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
81 | 82 | 9.595823 | GGAGTAGTTTAGCAGTAACATTTATGA | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
89 | 90 | 7.158099 | AGCAGTAACATTTATGAAAGTTCCC | 57.842 | 36.000 | 0.00 | 0.00 | 0.00 | 3.97 |
90 | 91 | 6.027749 | GCAGTAACATTTATGAAAGTTCCCG | 58.972 | 40.000 | 0.00 | 0.00 | 0.00 | 5.14 |
91 | 92 | 6.027749 | CAGTAACATTTATGAAAGTTCCCGC | 58.972 | 40.000 | 0.00 | 0.00 | 0.00 | 6.13 |
92 | 93 | 5.708230 | AGTAACATTTATGAAAGTTCCCGCA | 59.292 | 36.000 | 0.00 | 0.00 | 0.00 | 5.69 |
93 | 94 | 5.461032 | AACATTTATGAAAGTTCCCGCAA | 57.539 | 34.783 | 0.00 | 0.00 | 0.00 | 4.85 |
94 | 95 | 5.461032 | ACATTTATGAAAGTTCCCGCAAA | 57.539 | 34.783 | 0.00 | 0.00 | 0.00 | 3.68 |
95 | 96 | 5.848406 | ACATTTATGAAAGTTCCCGCAAAA | 58.152 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
96 | 97 | 6.284459 | ACATTTATGAAAGTTCCCGCAAAAA | 58.716 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
136 | 137 | 5.163195 | GGAAAAGTTGGCAGATAGATAGGGA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 4.20 |
142 | 143 | 3.245443 | TGGCAGATAGATAGGGACCTCTC | 60.245 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
143 | 144 | 3.013921 | GCAGATAGATAGGGACCTCTCG | 58.986 | 54.545 | 0.00 | 0.00 | 0.00 | 4.04 |
147 | 148 | 4.538490 | AGATAGATAGGGACCTCTCGTCAT | 59.462 | 45.833 | 0.00 | 0.00 | 43.95 | 3.06 |
172 | 173 | 0.839277 | TGGACATGGATGCCTACCTG | 59.161 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
216 | 217 | 2.624293 | CCCACACCACCTCATCTCTCTA | 60.624 | 54.545 | 0.00 | 0.00 | 0.00 | 2.43 |
253 | 254 | 3.366396 | TCTTCTCCTCTCCACCATACAC | 58.634 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
294 | 295 | 1.758514 | GATCAGGCCGGAGACAGGA | 60.759 | 63.158 | 12.27 | 0.00 | 0.00 | 3.86 |
319 | 320 | 0.528470 | GGAGAGGTTGTCTGGTCTCG | 59.472 | 60.000 | 0.00 | 0.00 | 37.00 | 4.04 |
348 | 349 | 1.683385 | CCGCTAGTCCATGATCTGTCA | 59.317 | 52.381 | 0.00 | 0.00 | 39.04 | 3.58 |
389 | 390 | 0.385751 | GATCCGGACGAGATGAAGCA | 59.614 | 55.000 | 6.12 | 0.00 | 0.00 | 3.91 |
455 | 456 | 4.309950 | GAGGCCAACCGTCGGTGT | 62.310 | 66.667 | 19.67 | 5.45 | 42.76 | 4.16 |
741 | 776 | 8.632906 | ACTTCTGAATGTTCTCATCTGATTTT | 57.367 | 30.769 | 0.00 | 0.00 | 32.56 | 1.82 |
742 | 777 | 9.075678 | ACTTCTGAATGTTCTCATCTGATTTTT | 57.924 | 29.630 | 0.00 | 0.00 | 32.56 | 1.94 |
768 | 834 | 8.486210 | TGCACTAGTAACTGAATCCTTATCAAT | 58.514 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
885 | 968 | 0.307760 | CGCTGTGTTTCCTGTCAACC | 59.692 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
890 | 973 | 4.672409 | CTGTGTTTCCTGTCAACCTTTTC | 58.328 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
891 | 974 | 4.082845 | TGTGTTTCCTGTCAACCTTTTCA | 58.917 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
897 | 980 | 4.728772 | TCCTGTCAACCTTTTCATGTCAT | 58.271 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
903 | 990 | 8.094798 | TGTCAACCTTTTCATGTCATACTAAC | 57.905 | 34.615 | 0.00 | 0.00 | 0.00 | 2.34 |
909 | 996 | 9.436957 | ACCTTTTCATGTCATACTAACTACAAG | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
972 | 1085 | 8.758829 | TGTATGTGTATACATCTTTGGAGAAGT | 58.241 | 33.333 | 9.18 | 0.00 | 44.00 | 3.01 |
978 | 1094 | 8.687242 | TGTATACATCTTTGGAGAAGTAGACAG | 58.313 | 37.037 | 12.44 | 0.00 | 45.61 | 3.51 |
988 | 1104 | 9.750783 | TTTGGAGAAGTAGACAGTAATACTACT | 57.249 | 33.333 | 0.00 | 0.00 | 45.47 | 2.57 |
989 | 1105 | 8.961294 | TGGAGAAGTAGACAGTAATACTACTC | 57.039 | 38.462 | 0.00 | 0.00 | 43.65 | 2.59 |
990 | 1106 | 7.992033 | TGGAGAAGTAGACAGTAATACTACTCC | 59.008 | 40.741 | 0.00 | 0.00 | 43.65 | 3.85 |
991 | 1107 | 8.212995 | GGAGAAGTAGACAGTAATACTACTCCT | 58.787 | 40.741 | 0.00 | 0.00 | 43.65 | 3.69 |
995 | 1111 | 9.835389 | AAGTAGACAGTAATACTACTCCTACTG | 57.165 | 37.037 | 17.00 | 6.55 | 43.03 | 2.74 |
996 | 1112 | 9.211410 | AGTAGACAGTAATACTACTCCTACTGA | 57.789 | 37.037 | 16.16 | 0.00 | 42.70 | 3.41 |
997 | 1113 | 9.829507 | GTAGACAGTAATACTACTCCTACTGAA | 57.170 | 37.037 | 13.47 | 0.00 | 42.47 | 3.02 |
1064 | 1180 | 0.038526 | AACCTCTTCACGCACTACCG | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1485 | 1619 | 3.499737 | CCGGTGGATGCTGTTCGC | 61.500 | 66.667 | 0.00 | 0.00 | 39.77 | 4.70 |
1595 | 1729 | 1.881973 | CCACCACAACATCAACTCCAG | 59.118 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1745 | 1883 | 0.535102 | CCAGGTATGTTGGGCGATCC | 60.535 | 60.000 | 0.00 | 0.00 | 31.87 | 3.36 |
2001 | 2289 | 3.672511 | CGCGGAAGAACTTCACTAAGCTA | 60.673 | 47.826 | 15.02 | 0.00 | 41.20 | 3.32 |
2063 | 2351 | 0.462581 | GACATCCCAGATCAAGCGCA | 60.463 | 55.000 | 11.47 | 0.00 | 0.00 | 6.09 |
2332 | 2804 | 2.226330 | ACATTTTGCTGTCGTGCCTTA | 58.774 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
2490 | 3043 | 5.348986 | TCTGCAGAGTCACGTTTTATATCC | 58.651 | 41.667 | 13.74 | 0.00 | 0.00 | 2.59 |
2512 | 3065 | 2.037772 | ACGTTCCTTCTGCTGACTGAAT | 59.962 | 45.455 | 7.09 | 0.00 | 33.81 | 2.57 |
2515 | 3068 | 4.067896 | GTTCCTTCTGCTGACTGAATCAA | 58.932 | 43.478 | 7.09 | 0.00 | 36.69 | 2.57 |
2523 | 3099 | 4.644498 | TGCTGACTGAATCAAGAACATGA | 58.356 | 39.130 | 0.00 | 0.00 | 36.69 | 3.07 |
2525 | 3101 | 5.532032 | TGCTGACTGAATCAAGAACATGAAA | 59.468 | 36.000 | 0.00 | 0.00 | 36.69 | 2.69 |
2567 | 3143 | 6.573434 | TGGAGAGCATGTACTAACAGTTATG | 58.427 | 40.000 | 0.00 | 0.00 | 39.49 | 1.90 |
2573 | 3149 | 9.400638 | GAGCATGTACTAACAGTTATGACTATC | 57.599 | 37.037 | 0.00 | 0.00 | 39.49 | 2.08 |
2580 | 3156 | 7.710896 | ACTAACAGTTATGACTATCGTTACCC | 58.289 | 38.462 | 0.00 | 0.00 | 33.90 | 3.69 |
2581 | 3157 | 5.179045 | ACAGTTATGACTATCGTTACCCG | 57.821 | 43.478 | 0.00 | 0.00 | 33.90 | 5.28 |
2582 | 3158 | 3.979495 | CAGTTATGACTATCGTTACCCGC | 59.021 | 47.826 | 0.00 | 0.00 | 33.90 | 6.13 |
2583 | 3159 | 3.005155 | AGTTATGACTATCGTTACCCGCC | 59.995 | 47.826 | 0.00 | 0.00 | 33.32 | 6.13 |
2584 | 3160 | 1.405872 | ATGACTATCGTTACCCGCCA | 58.594 | 50.000 | 0.00 | 0.00 | 36.19 | 5.69 |
2585 | 3161 | 1.184431 | TGACTATCGTTACCCGCCAA | 58.816 | 50.000 | 0.00 | 0.00 | 36.19 | 4.52 |
2586 | 3162 | 1.549620 | TGACTATCGTTACCCGCCAAA | 59.450 | 47.619 | 0.00 | 0.00 | 36.19 | 3.28 |
2587 | 3163 | 2.028294 | TGACTATCGTTACCCGCCAAAA | 60.028 | 45.455 | 0.00 | 0.00 | 36.19 | 2.44 |
2588 | 3164 | 3.002102 | GACTATCGTTACCCGCCAAAAA | 58.998 | 45.455 | 0.00 | 0.00 | 36.19 | 1.94 |
2618 | 3194 | 8.004087 | AGTTATGACTATCGTTAGCTTGGTTA | 57.996 | 34.615 | 0.00 | 0.00 | 33.32 | 2.85 |
2619 | 3195 | 8.136165 | AGTTATGACTATCGTTAGCTTGGTTAG | 58.864 | 37.037 | 0.00 | 0.00 | 33.32 | 2.34 |
2656 | 3232 | 9.974980 | TGATCCTTTCTTTGTTGTTTTTATACC | 57.025 | 29.630 | 0.00 | 0.00 | 0.00 | 2.73 |
2657 | 3233 | 9.974980 | GATCCTTTCTTTGTTGTTTTTATACCA | 57.025 | 29.630 | 0.00 | 0.00 | 0.00 | 3.25 |
2721 | 3301 | 5.754890 | CCATATTGCTTTTTAATCAGGGTGC | 59.245 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2765 | 3346 | 0.755686 | GCCTCCTTCCATCACGAGAT | 59.244 | 55.000 | 0.00 | 0.00 | 33.87 | 2.75 |
2783 | 3364 | 7.226918 | TCACGAGATAGTGATCTTAGGTACTTG | 59.773 | 40.741 | 0.00 | 0.00 | 45.18 | 3.16 |
2786 | 3367 | 8.233868 | CGAGATAGTGATCTTAGGTACTTGATG | 58.766 | 40.741 | 0.00 | 0.00 | 42.80 | 3.07 |
2800 | 3381 | 2.821969 | ACTTGATGCCAGTCAAACCATC | 59.178 | 45.455 | 0.00 | 0.00 | 37.63 | 3.51 |
2804 | 3385 | 3.833650 | TGATGCCAGTCAAACCATCATTT | 59.166 | 39.130 | 0.00 | 0.00 | 39.14 | 2.32 |
2812 | 3393 | 6.392354 | CAGTCAAACCATCATTTACAAGCAT | 58.608 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2857 | 3438 | 7.986085 | ACTAGCTTCATATGTTGTGTTTTCT | 57.014 | 32.000 | 1.90 | 0.00 | 0.00 | 2.52 |
2859 | 3440 | 9.502091 | ACTAGCTTCATATGTTGTGTTTTCTTA | 57.498 | 29.630 | 1.90 | 0.00 | 0.00 | 2.10 |
2895 | 3486 | 4.002316 | CAGAAGGCTTTCTTTCAGGAGAG | 58.998 | 47.826 | 8.60 | 0.00 | 41.71 | 3.20 |
2903 | 3494 | 2.603021 | TCTTTCAGGAGAGCAGACTGT | 58.397 | 47.619 | 3.99 | 0.00 | 34.02 | 3.55 |
2912 | 3503 | 2.483583 | GAGCAGACTGTACCTGATCG | 57.516 | 55.000 | 3.99 | 0.00 | 37.33 | 3.69 |
2942 | 3533 | 2.967929 | ATCTCGCGTGCTCTGCCATC | 62.968 | 60.000 | 5.77 | 0.00 | 0.00 | 3.51 |
2947 | 3538 | 2.758089 | CGTGCTCTGCCATCTTGCC | 61.758 | 63.158 | 0.00 | 0.00 | 0.00 | 4.52 |
2953 | 3544 | 0.881118 | TCTGCCATCTTGCCGTTTTC | 59.119 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2962 | 3553 | 4.561735 | TCTTGCCGTTTTCCTTAACAAG | 57.438 | 40.909 | 0.00 | 0.00 | 35.51 | 3.16 |
2984 | 3575 | 9.274206 | ACAAGGAAATACTCTTCTTTTCTGTAC | 57.726 | 33.333 | 0.00 | 0.00 | 31.57 | 2.90 |
2992 | 3583 | 5.406780 | ACTCTTCTTTTCTGTACATCTTGCG | 59.593 | 40.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2994 | 3585 | 6.452242 | TCTTCTTTTCTGTACATCTTGCGTA | 58.548 | 36.000 | 0.00 | 0.00 | 0.00 | 4.42 |
2995 | 3586 | 6.926826 | TCTTCTTTTCTGTACATCTTGCGTAA | 59.073 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2996 | 3587 | 7.602644 | TCTTCTTTTCTGTACATCTTGCGTAAT | 59.397 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
2997 | 3588 | 7.667043 | TCTTTTCTGTACATCTTGCGTAATT | 57.333 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2998 | 3589 | 7.739295 | TCTTTTCTGTACATCTTGCGTAATTC | 58.261 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
3000 | 3591 | 6.647212 | TTCTGTACATCTTGCGTAATTCTG | 57.353 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
3001 | 3592 | 5.720202 | TCTGTACATCTTGCGTAATTCTGT | 58.280 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
3002 | 3593 | 6.163476 | TCTGTACATCTTGCGTAATTCTGTT | 58.837 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3003 | 3594 | 6.649141 | TCTGTACATCTTGCGTAATTCTGTTT | 59.351 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
3004 | 3595 | 7.172532 | TCTGTACATCTTGCGTAATTCTGTTTT | 59.827 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
3005 | 3596 | 8.312896 | TGTACATCTTGCGTAATTCTGTTTTA | 57.687 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
3006 | 3597 | 8.225107 | TGTACATCTTGCGTAATTCTGTTTTAC | 58.775 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
3015 | 3606 | 7.329294 | CGTAATTCTGTTTTACGCGTAATTC | 57.671 | 36.000 | 30.36 | 24.14 | 43.50 | 2.17 |
3016 | 3607 | 7.168796 | CGTAATTCTGTTTTACGCGTAATTCT | 58.831 | 34.615 | 30.36 | 13.04 | 43.50 | 2.40 |
3017 | 3608 | 7.159818 | CGTAATTCTGTTTTACGCGTAATTCTG | 59.840 | 37.037 | 30.36 | 25.22 | 43.50 | 3.02 |
3018 | 3609 | 4.316375 | TCTGTTTTACGCGTAATTCTGC | 57.684 | 40.909 | 30.36 | 18.36 | 0.00 | 4.26 |
3019 | 3610 | 3.991773 | TCTGTTTTACGCGTAATTCTGCT | 59.008 | 39.130 | 30.36 | 0.00 | 0.00 | 4.24 |
3020 | 3611 | 4.060288 | TGTTTTACGCGTAATTCTGCTG | 57.940 | 40.909 | 30.36 | 0.00 | 0.00 | 4.41 |
3021 | 3612 | 2.798834 | TTTACGCGTAATTCTGCTGC | 57.201 | 45.000 | 30.36 | 0.00 | 0.00 | 5.25 |
3022 | 3613 | 1.003851 | TTACGCGTAATTCTGCTGCC | 58.996 | 50.000 | 26.87 | 0.00 | 0.00 | 4.85 |
3023 | 3614 | 0.174845 | TACGCGTAATTCTGCTGCCT | 59.825 | 50.000 | 18.22 | 0.00 | 0.00 | 4.75 |
3024 | 3615 | 1.349627 | CGCGTAATTCTGCTGCCTG | 59.650 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
3025 | 3616 | 1.361668 | CGCGTAATTCTGCTGCCTGT | 61.362 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3026 | 3617 | 0.804989 | GCGTAATTCTGCTGCCTGTT | 59.195 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3027 | 3618 | 1.200020 | GCGTAATTCTGCTGCCTGTTT | 59.800 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
3028 | 3619 | 2.351738 | GCGTAATTCTGCTGCCTGTTTT | 60.352 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
3029 | 3620 | 3.857010 | GCGTAATTCTGCTGCCTGTTTTT | 60.857 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
3052 | 3643 | 3.552604 | TTTGGACGAAATGCAGTTAGC | 57.447 | 42.857 | 6.92 | 0.57 | 45.96 | 3.09 |
3069 | 3660 | 2.918571 | GCACTTAGCACTGCTGTCA | 58.081 | 52.632 | 14.15 | 0.00 | 44.79 | 3.58 |
3070 | 3661 | 1.446907 | GCACTTAGCACTGCTGTCAT | 58.553 | 50.000 | 14.15 | 0.00 | 44.79 | 3.06 |
3071 | 3662 | 1.808945 | GCACTTAGCACTGCTGTCATT | 59.191 | 47.619 | 14.15 | 0.00 | 44.79 | 2.57 |
3072 | 3663 | 2.413765 | GCACTTAGCACTGCTGTCATTG | 60.414 | 50.000 | 14.15 | 4.96 | 44.79 | 2.82 |
3073 | 3664 | 1.808945 | ACTTAGCACTGCTGTCATTGC | 59.191 | 47.619 | 14.15 | 6.39 | 45.74 | 3.56 |
3074 | 3665 | 1.131883 | CTTAGCACTGCTGTCATTGCC | 59.868 | 52.381 | 14.15 | 0.00 | 46.32 | 4.52 |
3075 | 3666 | 0.677731 | TAGCACTGCTGTCATTGCCC | 60.678 | 55.000 | 14.15 | 0.00 | 46.32 | 5.36 |
3076 | 3667 | 1.975407 | GCACTGCTGTCATTGCCCT | 60.975 | 57.895 | 0.00 | 0.00 | 41.38 | 5.19 |
3077 | 3668 | 0.677731 | GCACTGCTGTCATTGCCCTA | 60.678 | 55.000 | 0.00 | 0.00 | 41.38 | 3.53 |
3078 | 3669 | 1.825090 | CACTGCTGTCATTGCCCTAA | 58.175 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3079 | 3670 | 1.741706 | CACTGCTGTCATTGCCCTAAG | 59.258 | 52.381 | 0.00 | 0.00 | 0.00 | 2.18 |
3080 | 3671 | 1.630369 | ACTGCTGTCATTGCCCTAAGA | 59.370 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
3081 | 3672 | 2.040278 | ACTGCTGTCATTGCCCTAAGAA | 59.960 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
3082 | 3673 | 2.681848 | CTGCTGTCATTGCCCTAAGAAG | 59.318 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3083 | 3674 | 2.019984 | GCTGTCATTGCCCTAAGAAGG | 58.980 | 52.381 | 0.00 | 0.00 | 43.25 | 3.46 |
3105 | 3696 | 4.893424 | GTTCTTCAACCAAAGTACAGCA | 57.107 | 40.909 | 0.00 | 0.00 | 0.00 | 4.41 |
3106 | 3697 | 5.438761 | GTTCTTCAACCAAAGTACAGCAT | 57.561 | 39.130 | 0.00 | 0.00 | 0.00 | 3.79 |
3107 | 3698 | 6.554334 | GTTCTTCAACCAAAGTACAGCATA | 57.446 | 37.500 | 0.00 | 0.00 | 0.00 | 3.14 |
3108 | 3699 | 6.966021 | GTTCTTCAACCAAAGTACAGCATAA | 58.034 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
3109 | 3700 | 7.593825 | GTTCTTCAACCAAAGTACAGCATAAT | 58.406 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
3110 | 3701 | 7.377766 | TCTTCAACCAAAGTACAGCATAATC | 57.622 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
3111 | 3702 | 5.794687 | TCAACCAAAGTACAGCATAATCG | 57.205 | 39.130 | 0.00 | 0.00 | 0.00 | 3.34 |
3112 | 3703 | 5.483811 | TCAACCAAAGTACAGCATAATCGA | 58.516 | 37.500 | 0.00 | 0.00 | 0.00 | 3.59 |
3113 | 3704 | 6.112734 | TCAACCAAAGTACAGCATAATCGAT | 58.887 | 36.000 | 0.00 | 0.00 | 0.00 | 3.59 |
3114 | 3705 | 7.269316 | TCAACCAAAGTACAGCATAATCGATA | 58.731 | 34.615 | 0.00 | 0.00 | 0.00 | 2.92 |
3115 | 3706 | 7.766738 | TCAACCAAAGTACAGCATAATCGATAA | 59.233 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3116 | 3707 | 8.559536 | CAACCAAAGTACAGCATAATCGATAAT | 58.440 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
3117 | 3708 | 8.311650 | ACCAAAGTACAGCATAATCGATAATC | 57.688 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
3118 | 3709 | 7.931407 | ACCAAAGTACAGCATAATCGATAATCA | 59.069 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3119 | 3710 | 8.438513 | CCAAAGTACAGCATAATCGATAATCAG | 58.561 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
3120 | 3711 | 8.982685 | CAAAGTACAGCATAATCGATAATCAGT | 58.017 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3121 | 3712 | 8.749841 | AAGTACAGCATAATCGATAATCAGTC | 57.250 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
3122 | 3713 | 7.024171 | AGTACAGCATAATCGATAATCAGTCG | 58.976 | 38.462 | 0.00 | 0.00 | 40.30 | 4.18 |
3123 | 3714 | 5.164233 | ACAGCATAATCGATAATCAGTCGG | 58.836 | 41.667 | 0.00 | 0.00 | 39.45 | 4.79 |
3124 | 3715 | 4.564372 | CAGCATAATCGATAATCAGTCGGG | 59.436 | 45.833 | 0.00 | 0.00 | 39.45 | 5.14 |
3125 | 3716 | 3.307242 | GCATAATCGATAATCAGTCGGGC | 59.693 | 47.826 | 0.00 | 0.00 | 39.45 | 6.13 |
3126 | 3717 | 4.748892 | CATAATCGATAATCAGTCGGGCT | 58.251 | 43.478 | 0.00 | 0.00 | 39.45 | 5.19 |
3127 | 3718 | 2.732412 | ATCGATAATCAGTCGGGCTG | 57.268 | 50.000 | 2.46 | 2.46 | 46.34 | 4.85 |
3128 | 3719 | 0.673985 | TCGATAATCAGTCGGGCTGG | 59.326 | 55.000 | 10.12 | 0.00 | 45.08 | 4.85 |
3129 | 3720 | 0.389391 | CGATAATCAGTCGGGCTGGT | 59.611 | 55.000 | 10.12 | 0.00 | 45.08 | 4.00 |
3130 | 3721 | 1.869754 | CGATAATCAGTCGGGCTGGTG | 60.870 | 57.143 | 10.12 | 0.00 | 45.08 | 4.17 |
3131 | 3722 | 1.139058 | GATAATCAGTCGGGCTGGTGT | 59.861 | 52.381 | 10.12 | 0.00 | 45.08 | 4.16 |
3132 | 3723 | 0.535335 | TAATCAGTCGGGCTGGTGTC | 59.465 | 55.000 | 10.12 | 0.00 | 45.08 | 3.67 |
3133 | 3724 | 2.507110 | AATCAGTCGGGCTGGTGTCG | 62.507 | 60.000 | 10.12 | 0.00 | 45.08 | 4.35 |
3134 | 3725 | 4.742201 | CAGTCGGGCTGGTGTCGG | 62.742 | 72.222 | 0.55 | 0.00 | 41.42 | 4.79 |
3151 | 3742 | 2.671070 | GCCAAGGCCTGCACTCTA | 59.329 | 61.111 | 5.69 | 0.00 | 34.56 | 2.43 |
3152 | 3743 | 1.451028 | GCCAAGGCCTGCACTCTAG | 60.451 | 63.158 | 5.69 | 0.00 | 34.56 | 2.43 |
3153 | 3744 | 1.986413 | CCAAGGCCTGCACTCTAGT | 59.014 | 57.895 | 5.69 | 0.00 | 0.00 | 2.57 |
3162 | 3753 | 4.198625 | CACTCTAGTGCTGCCAGC | 57.801 | 61.111 | 10.45 | 10.45 | 42.82 | 4.85 |
3172 | 3763 | 2.123854 | CTGCCAGCATCAGCCCAT | 60.124 | 61.111 | 0.00 | 0.00 | 43.56 | 4.00 |
3173 | 3764 | 1.756950 | CTGCCAGCATCAGCCCATT | 60.757 | 57.895 | 0.00 | 0.00 | 43.56 | 3.16 |
3174 | 3765 | 2.016393 | CTGCCAGCATCAGCCCATTG | 62.016 | 60.000 | 0.00 | 0.00 | 43.56 | 2.82 |
3175 | 3766 | 1.755395 | GCCAGCATCAGCCCATTGA | 60.755 | 57.895 | 0.00 | 0.00 | 43.56 | 2.57 |
3176 | 3767 | 2.012902 | GCCAGCATCAGCCCATTGAC | 62.013 | 60.000 | 0.00 | 0.00 | 43.56 | 3.18 |
3177 | 3768 | 1.721664 | CCAGCATCAGCCCATTGACG | 61.722 | 60.000 | 0.00 | 0.00 | 43.56 | 4.35 |
3178 | 3769 | 0.745486 | CAGCATCAGCCCATTGACGA | 60.745 | 55.000 | 0.00 | 0.00 | 43.56 | 4.20 |
3179 | 3770 | 0.463295 | AGCATCAGCCCATTGACGAG | 60.463 | 55.000 | 0.00 | 0.00 | 43.56 | 4.18 |
3180 | 3771 | 2.020131 | CATCAGCCCATTGACGAGC | 58.980 | 57.895 | 0.00 | 0.00 | 0.00 | 5.03 |
3181 | 3772 | 0.463295 | CATCAGCCCATTGACGAGCT | 60.463 | 55.000 | 0.00 | 0.00 | 35.52 | 4.09 |
3182 | 3773 | 0.254178 | ATCAGCCCATTGACGAGCTT | 59.746 | 50.000 | 0.00 | 0.00 | 31.93 | 3.74 |
3183 | 3774 | 0.391661 | TCAGCCCATTGACGAGCTTC | 60.392 | 55.000 | 0.00 | 0.00 | 31.93 | 3.86 |
3184 | 3775 | 1.448540 | AGCCCATTGACGAGCTTCG | 60.449 | 57.895 | 0.00 | 0.00 | 46.93 | 3.79 |
3185 | 3776 | 1.447838 | GCCCATTGACGAGCTTCGA | 60.448 | 57.895 | 11.64 | 0.00 | 43.74 | 3.71 |
3186 | 3777 | 1.424493 | GCCCATTGACGAGCTTCGAG | 61.424 | 60.000 | 11.64 | 0.00 | 43.74 | 4.04 |
3187 | 3778 | 1.424493 | CCCATTGACGAGCTTCGAGC | 61.424 | 60.000 | 11.64 | 0.00 | 43.74 | 5.03 |
3203 | 3794 | 4.855596 | GCTGAAGCTTTGCGGAAG | 57.144 | 55.556 | 0.00 | 0.00 | 38.21 | 3.46 |
3204 | 3795 | 2.247790 | GCTGAAGCTTTGCGGAAGA | 58.752 | 52.632 | 0.00 | 0.00 | 37.57 | 2.87 |
3205 | 3796 | 0.110010 | GCTGAAGCTTTGCGGAAGAC | 60.110 | 55.000 | 0.00 | 0.00 | 37.57 | 3.01 |
3206 | 3797 | 3.686635 | GCTGAAGCTTTGCGGAAGACG | 62.687 | 57.143 | 0.00 | 0.00 | 41.27 | 4.18 |
3217 | 3808 | 3.806591 | GGAAGACGATCGTGACCAA | 57.193 | 52.632 | 28.12 | 0.00 | 0.00 | 3.67 |
3218 | 3809 | 1.630148 | GGAAGACGATCGTGACCAAG | 58.370 | 55.000 | 28.12 | 0.00 | 0.00 | 3.61 |
3219 | 3810 | 1.630148 | GAAGACGATCGTGACCAAGG | 58.370 | 55.000 | 28.12 | 0.00 | 0.00 | 3.61 |
3220 | 3811 | 0.389948 | AAGACGATCGTGACCAAGGC | 60.390 | 55.000 | 28.12 | 8.43 | 0.00 | 4.35 |
3221 | 3812 | 1.080093 | GACGATCGTGACCAAGGCA | 60.080 | 57.895 | 28.12 | 0.00 | 0.00 | 4.75 |
3222 | 3813 | 0.460284 | GACGATCGTGACCAAGGCAT | 60.460 | 55.000 | 28.12 | 0.00 | 0.00 | 4.40 |
3223 | 3814 | 0.821517 | ACGATCGTGACCAAGGCATA | 59.178 | 50.000 | 22.06 | 0.00 | 0.00 | 3.14 |
3224 | 3815 | 1.202417 | ACGATCGTGACCAAGGCATAG | 60.202 | 52.381 | 22.06 | 0.00 | 0.00 | 2.23 |
3225 | 3816 | 1.202417 | CGATCGTGACCAAGGCATAGT | 60.202 | 52.381 | 7.03 | 0.00 | 0.00 | 2.12 |
3226 | 3817 | 2.205074 | GATCGTGACCAAGGCATAGTG | 58.795 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
3227 | 3818 | 0.391130 | TCGTGACCAAGGCATAGTGC | 60.391 | 55.000 | 0.00 | 0.00 | 44.08 | 4.40 |
3228 | 3819 | 0.391661 | CGTGACCAAGGCATAGTGCT | 60.392 | 55.000 | 1.64 | 0.00 | 44.28 | 4.40 |
3229 | 3820 | 1.826385 | GTGACCAAGGCATAGTGCTT | 58.174 | 50.000 | 1.64 | 0.00 | 44.28 | 3.91 |
3230 | 3821 | 1.470098 | GTGACCAAGGCATAGTGCTTG | 59.530 | 52.381 | 1.64 | 4.92 | 44.28 | 4.01 |
3231 | 3822 | 0.453390 | GACCAAGGCATAGTGCTTGC | 59.547 | 55.000 | 1.64 | 0.00 | 44.28 | 4.01 |
3238 | 3829 | 2.730550 | GCATAGTGCTTGCCTGTTTT | 57.269 | 45.000 | 0.00 | 0.00 | 40.96 | 2.43 |
3239 | 3830 | 3.030668 | GCATAGTGCTTGCCTGTTTTT | 57.969 | 42.857 | 0.00 | 0.00 | 40.96 | 1.94 |
3240 | 3831 | 4.173036 | GCATAGTGCTTGCCTGTTTTTA | 57.827 | 40.909 | 0.00 | 0.00 | 40.96 | 1.52 |
3241 | 3832 | 4.747810 | GCATAGTGCTTGCCTGTTTTTAT | 58.252 | 39.130 | 0.00 | 0.00 | 40.96 | 1.40 |
3242 | 3833 | 5.890334 | GCATAGTGCTTGCCTGTTTTTATA | 58.110 | 37.500 | 0.00 | 0.00 | 40.96 | 0.98 |
3243 | 3834 | 5.973565 | GCATAGTGCTTGCCTGTTTTTATAG | 59.026 | 40.000 | 0.00 | 0.00 | 40.96 | 1.31 |
3244 | 3835 | 6.404734 | GCATAGTGCTTGCCTGTTTTTATAGT | 60.405 | 38.462 | 0.00 | 0.00 | 40.96 | 2.12 |
3245 | 3836 | 7.538575 | CATAGTGCTTGCCTGTTTTTATAGTT | 58.461 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
3246 | 3837 | 6.013842 | AGTGCTTGCCTGTTTTTATAGTTC | 57.986 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
3247 | 3838 | 5.770162 | AGTGCTTGCCTGTTTTTATAGTTCT | 59.230 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3248 | 3839 | 6.072452 | AGTGCTTGCCTGTTTTTATAGTTCTC | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
3249 | 3840 | 5.106712 | TGCTTGCCTGTTTTTATAGTTCTCG | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
3250 | 3841 | 5.106673 | GCTTGCCTGTTTTTATAGTTCTCGT | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3251 | 3842 | 5.856126 | TGCCTGTTTTTATAGTTCTCGTG | 57.144 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
3252 | 3843 | 4.693566 | TGCCTGTTTTTATAGTTCTCGTGG | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 4.94 |
3253 | 3844 | 4.694037 | GCCTGTTTTTATAGTTCTCGTGGT | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
3254 | 3845 | 5.180680 | GCCTGTTTTTATAGTTCTCGTGGTT | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
3255 | 3846 | 6.599437 | CCTGTTTTTATAGTTCTCGTGGTTG | 58.401 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3256 | 3847 | 6.204108 | CCTGTTTTTATAGTTCTCGTGGTTGT | 59.796 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
3257 | 3848 | 6.950545 | TGTTTTTATAGTTCTCGTGGTTGTG | 58.049 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
3258 | 3849 | 6.017770 | TGTTTTTATAGTTCTCGTGGTTGTGG | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
3259 | 3850 | 2.094762 | ATAGTTCTCGTGGTTGTGGC | 57.905 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3260 | 3851 | 0.034337 | TAGTTCTCGTGGTTGTGGCC | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
3261 | 3852 | 2.280524 | TTCTCGTGGTTGTGGCCG | 60.281 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
3262 | 3853 | 3.818121 | TTCTCGTGGTTGTGGCCGG | 62.818 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
3263 | 3854 | 4.308458 | CTCGTGGTTGTGGCCGGA | 62.308 | 66.667 | 5.05 | 0.00 | 0.00 | 5.14 |
3264 | 3855 | 3.605749 | CTCGTGGTTGTGGCCGGAT | 62.606 | 63.158 | 5.05 | 0.00 | 0.00 | 4.18 |
3265 | 3856 | 2.671619 | CGTGGTTGTGGCCGGATT | 60.672 | 61.111 | 5.05 | 0.00 | 0.00 | 3.01 |
3266 | 3857 | 2.961768 | GTGGTTGTGGCCGGATTG | 59.038 | 61.111 | 5.05 | 0.00 | 0.00 | 2.67 |
3267 | 3858 | 1.901464 | GTGGTTGTGGCCGGATTGT | 60.901 | 57.895 | 5.05 | 0.00 | 0.00 | 2.71 |
3268 | 3859 | 1.152652 | TGGTTGTGGCCGGATTGTT | 60.153 | 52.632 | 5.05 | 0.00 | 0.00 | 2.83 |
3269 | 3860 | 0.110678 | TGGTTGTGGCCGGATTGTTA | 59.889 | 50.000 | 5.05 | 0.00 | 0.00 | 2.41 |
3270 | 3861 | 0.524414 | GGTTGTGGCCGGATTGTTAC | 59.476 | 55.000 | 5.05 | 0.00 | 0.00 | 2.50 |
3271 | 3862 | 1.240256 | GTTGTGGCCGGATTGTTACA | 58.760 | 50.000 | 5.05 | 0.00 | 0.00 | 2.41 |
3272 | 3863 | 1.816224 | GTTGTGGCCGGATTGTTACAT | 59.184 | 47.619 | 5.05 | 0.00 | 0.00 | 2.29 |
3273 | 3864 | 2.208132 | TGTGGCCGGATTGTTACATT | 57.792 | 45.000 | 5.05 | 0.00 | 0.00 | 2.71 |
3274 | 3865 | 2.088423 | TGTGGCCGGATTGTTACATTC | 58.912 | 47.619 | 5.05 | 0.00 | 0.00 | 2.67 |
3275 | 3866 | 2.290641 | TGTGGCCGGATTGTTACATTCT | 60.291 | 45.455 | 5.05 | 0.00 | 0.00 | 2.40 |
3276 | 3867 | 2.097466 | GTGGCCGGATTGTTACATTCTG | 59.903 | 50.000 | 5.05 | 8.60 | 0.00 | 3.02 |
3277 | 3868 | 1.065551 | GGCCGGATTGTTACATTCTGC | 59.934 | 52.381 | 5.05 | 10.50 | 0.00 | 4.26 |
3278 | 3869 | 2.017049 | GCCGGATTGTTACATTCTGCT | 58.983 | 47.619 | 5.05 | 0.00 | 0.00 | 4.24 |
3279 | 3870 | 2.223340 | GCCGGATTGTTACATTCTGCTG | 60.223 | 50.000 | 5.05 | 0.94 | 0.00 | 4.41 |
3280 | 3871 | 2.355756 | CCGGATTGTTACATTCTGCTGG | 59.644 | 50.000 | 0.00 | 3.47 | 0.00 | 4.85 |
3281 | 3872 | 2.355756 | CGGATTGTTACATTCTGCTGGG | 59.644 | 50.000 | 7.11 | 0.00 | 0.00 | 4.45 |
3282 | 3873 | 3.356290 | GGATTGTTACATTCTGCTGGGT | 58.644 | 45.455 | 7.11 | 0.00 | 0.00 | 4.51 |
3283 | 3874 | 3.378427 | GGATTGTTACATTCTGCTGGGTC | 59.622 | 47.826 | 7.11 | 0.00 | 0.00 | 4.46 |
3284 | 3875 | 3.500448 | TTGTTACATTCTGCTGGGTCA | 57.500 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1 | 2 | 9.992910 | GGTAACACTTTTTATATTCCTTTACGG | 57.007 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
41 | 42 | 9.451002 | GCTAAACTACTCCCTCTTTAAAGAAAT | 57.549 | 33.333 | 18.25 | 5.69 | 34.03 | 2.17 |
42 | 43 | 8.434392 | TGCTAAACTACTCCCTCTTTAAAGAAA | 58.566 | 33.333 | 18.25 | 6.85 | 34.03 | 2.52 |
43 | 44 | 7.970102 | TGCTAAACTACTCCCTCTTTAAAGAA | 58.030 | 34.615 | 18.25 | 3.85 | 34.03 | 2.52 |
44 | 45 | 7.234988 | ACTGCTAAACTACTCCCTCTTTAAAGA | 59.765 | 37.037 | 16.85 | 16.85 | 0.00 | 2.52 |
45 | 46 | 7.387643 | ACTGCTAAACTACTCCCTCTTTAAAG | 58.612 | 38.462 | 9.04 | 9.04 | 0.00 | 1.85 |
46 | 47 | 7.312415 | ACTGCTAAACTACTCCCTCTTTAAA | 57.688 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
47 | 48 | 6.930068 | ACTGCTAAACTACTCCCTCTTTAA | 57.070 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
48 | 49 | 7.452501 | TGTTACTGCTAAACTACTCCCTCTTTA | 59.547 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
49 | 50 | 6.269307 | TGTTACTGCTAAACTACTCCCTCTTT | 59.731 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
50 | 51 | 5.778750 | TGTTACTGCTAAACTACTCCCTCTT | 59.221 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
51 | 52 | 5.331069 | TGTTACTGCTAAACTACTCCCTCT | 58.669 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
52 | 53 | 5.656213 | TGTTACTGCTAAACTACTCCCTC | 57.344 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
53 | 54 | 6.622427 | AATGTTACTGCTAAACTACTCCCT | 57.378 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
54 | 55 | 8.827677 | CATAAATGTTACTGCTAAACTACTCCC | 58.172 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
55 | 56 | 9.595823 | TCATAAATGTTACTGCTAAACTACTCC | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
63 | 64 | 8.736244 | GGGAACTTTCATAAATGTTACTGCTAA | 58.264 | 33.333 | 0.00 | 0.00 | 35.00 | 3.09 |
64 | 65 | 7.065324 | CGGGAACTTTCATAAATGTTACTGCTA | 59.935 | 37.037 | 0.00 | 0.00 | 34.66 | 3.49 |
65 | 66 | 6.128007 | CGGGAACTTTCATAAATGTTACTGCT | 60.128 | 38.462 | 0.00 | 0.00 | 34.66 | 4.24 |
66 | 67 | 6.027749 | CGGGAACTTTCATAAATGTTACTGC | 58.972 | 40.000 | 0.00 | 0.00 | 34.66 | 4.40 |
67 | 68 | 6.027749 | GCGGGAACTTTCATAAATGTTACTG | 58.972 | 40.000 | 0.00 | 0.00 | 40.37 | 2.74 |
68 | 69 | 5.708230 | TGCGGGAACTTTCATAAATGTTACT | 59.292 | 36.000 | 0.00 | 0.00 | 35.00 | 2.24 |
69 | 70 | 5.945155 | TGCGGGAACTTTCATAAATGTTAC | 58.055 | 37.500 | 0.00 | 0.00 | 34.07 | 2.50 |
70 | 71 | 6.576662 | TTGCGGGAACTTTCATAAATGTTA | 57.423 | 33.333 | 0.00 | 0.00 | 34.07 | 2.41 |
71 | 72 | 5.461032 | TTGCGGGAACTTTCATAAATGTT | 57.539 | 34.783 | 0.00 | 0.00 | 35.96 | 2.71 |
72 | 73 | 5.461032 | TTTGCGGGAACTTTCATAAATGT | 57.539 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
73 | 74 | 6.777526 | TTTTTGCGGGAACTTTCATAAATG | 57.222 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
97 | 98 | 8.620416 | GCCAACTTTTCCTTTCATAAATGTTTT | 58.380 | 29.630 | 0.00 | 0.00 | 33.32 | 2.43 |
98 | 99 | 7.772757 | TGCCAACTTTTCCTTTCATAAATGTTT | 59.227 | 29.630 | 0.00 | 0.00 | 33.32 | 2.83 |
99 | 100 | 7.278875 | TGCCAACTTTTCCTTTCATAAATGTT | 58.721 | 30.769 | 0.00 | 0.00 | 34.91 | 2.71 |
100 | 101 | 6.825610 | TGCCAACTTTTCCTTTCATAAATGT | 58.174 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
101 | 102 | 7.153985 | TCTGCCAACTTTTCCTTTCATAAATG | 58.846 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
102 | 103 | 7.301868 | TCTGCCAACTTTTCCTTTCATAAAT | 57.698 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
103 | 104 | 6.723298 | TCTGCCAACTTTTCCTTTCATAAA | 57.277 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
104 | 105 | 6.916360 | ATCTGCCAACTTTTCCTTTCATAA | 57.084 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
143 | 144 | 0.172578 | TCCATGTCCACGTCGATGAC | 59.827 | 55.000 | 12.58 | 5.61 | 0.00 | 3.06 |
147 | 148 | 1.153647 | GCATCCATGTCCACGTCGA | 60.154 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
216 | 217 | 3.692593 | GAGAAGAAGGCGTAGAGAGAGTT | 59.307 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
274 | 275 | 3.781770 | CTGTCTCCGGCCTGATCGC | 62.782 | 68.421 | 0.00 | 0.00 | 0.00 | 4.58 |
280 | 281 | 2.043450 | CTCTCCTGTCTCCGGCCT | 60.043 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
294 | 295 | 1.077625 | AGACAACCTCTCCGGCTCT | 59.922 | 57.895 | 0.00 | 0.00 | 35.61 | 4.09 |
319 | 320 | 1.103803 | TGGACTAGCGGAGATGACAC | 58.896 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
438 | 439 | 4.309950 | ACACCGACGGTTGGCCTC | 62.310 | 66.667 | 19.02 | 0.00 | 31.02 | 4.70 |
439 | 440 | 4.619227 | CACACCGACGGTTGGCCT | 62.619 | 66.667 | 19.02 | 0.00 | 31.02 | 5.19 |
522 | 541 | 3.904339 | TGGAGAAGAAAGGCTGAAGTACT | 59.096 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
589 | 613 | 2.419673 | CGTATGCAGCAAAGGAACATGA | 59.580 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
591 | 615 | 1.133025 | GCGTATGCAGCAAAGGAACAT | 59.867 | 47.619 | 0.00 | 0.00 | 42.15 | 2.71 |
592 | 616 | 0.521291 | GCGTATGCAGCAAAGGAACA | 59.479 | 50.000 | 0.00 | 0.00 | 42.15 | 3.18 |
741 | 776 | 7.847096 | TGATAAGGATTCAGTTACTAGTGCAA | 58.153 | 34.615 | 5.39 | 0.00 | 0.00 | 4.08 |
742 | 777 | 7.418337 | TGATAAGGATTCAGTTACTAGTGCA | 57.582 | 36.000 | 5.39 | 0.00 | 0.00 | 4.57 |
795 | 861 | 1.816074 | CGGTAGCCTGCACCTAAAAA | 58.184 | 50.000 | 8.43 | 0.00 | 33.62 | 1.94 |
796 | 862 | 0.675522 | GCGGTAGCCTGCACCTAAAA | 60.676 | 55.000 | 8.43 | 0.00 | 37.42 | 1.52 |
797 | 863 | 1.078708 | GCGGTAGCCTGCACCTAAA | 60.079 | 57.895 | 8.43 | 0.00 | 37.42 | 1.85 |
798 | 864 | 2.582436 | GCGGTAGCCTGCACCTAA | 59.418 | 61.111 | 8.43 | 0.00 | 37.42 | 2.69 |
868 | 951 | 4.157656 | TGAAAAGGTTGACAGGAAACACAG | 59.842 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
869 | 952 | 4.082845 | TGAAAAGGTTGACAGGAAACACA | 58.917 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
885 | 968 | 8.935844 | TGCTTGTAGTTAGTATGACATGAAAAG | 58.064 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
890 | 973 | 6.258507 | TGCATGCTTGTAGTTAGTATGACATG | 59.741 | 38.462 | 20.33 | 0.00 | 37.77 | 3.21 |
891 | 974 | 6.348498 | TGCATGCTTGTAGTTAGTATGACAT | 58.652 | 36.000 | 20.33 | 0.00 | 37.77 | 3.06 |
897 | 980 | 6.322456 | AGAGAGATGCATGCTTGTAGTTAGTA | 59.678 | 38.462 | 20.33 | 0.00 | 0.00 | 1.82 |
903 | 990 | 5.814764 | AAAAGAGAGATGCATGCTTGTAG | 57.185 | 39.130 | 20.33 | 0.00 | 0.00 | 2.74 |
909 | 996 | 6.864360 | AGAGATAAAAAGAGAGATGCATGC | 57.136 | 37.500 | 11.82 | 11.82 | 0.00 | 4.06 |
1064 | 1180 | 2.899339 | GCATTCTCTCAGCGGCCC | 60.899 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
1191 | 1313 | 1.681538 | TGTAGAGCTCGTCATCCCTC | 58.318 | 55.000 | 8.37 | 0.00 | 0.00 | 4.30 |
1485 | 1619 | 4.641645 | TGTGGCCAGCTCAACGGG | 62.642 | 66.667 | 5.11 | 0.00 | 36.56 | 5.28 |
1556 | 1690 | 2.361757 | TGGATAATCGGCCTTTTGCATG | 59.638 | 45.455 | 0.00 | 0.00 | 43.89 | 4.06 |
1707 | 1841 | 4.137543 | CTGGAGCTGAGTAACCAAAGTTT | 58.862 | 43.478 | 0.00 | 0.00 | 37.42 | 2.66 |
1745 | 1883 | 2.190161 | CAGAATTCCATTGCGTGCATG | 58.810 | 47.619 | 0.09 | 0.09 | 0.00 | 4.06 |
1948 | 2236 | 1.818060 | CAAATGACCATCCGCTCCAAA | 59.182 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
1949 | 2237 | 1.462616 | CAAATGACCATCCGCTCCAA | 58.537 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2001 | 2289 | 3.136260 | ACATTTCCTGTTGGTTTGCCATT | 59.864 | 39.130 | 0.00 | 0.00 | 45.56 | 3.16 |
2063 | 2351 | 3.521126 | AGTTGCCATCTCCTTCATGTACT | 59.479 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
2300 | 2759 | 5.068636 | ACAGCAAAATGTTCTCAGAGATGT | 58.931 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
2332 | 2804 | 6.888632 | ACAGGATAGCAAAATGTTCTCAGAAT | 59.111 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
2490 | 3043 | 1.143305 | CAGTCAGCAGAAGGAACGTG | 58.857 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2512 | 3065 | 5.589855 | ACACAGACATGTTTCATGTTCTTGA | 59.410 | 36.000 | 15.02 | 0.00 | 37.65 | 3.02 |
2525 | 3101 | 4.067896 | CTCCAAGCTAAACACAGACATGT | 58.932 | 43.478 | 0.00 | 0.00 | 41.57 | 3.21 |
2601 | 3177 | 5.517322 | AGACCTAACCAAGCTAACGATAG | 57.483 | 43.478 | 0.00 | 0.00 | 46.19 | 2.08 |
2602 | 3178 | 5.927281 | AAGACCTAACCAAGCTAACGATA | 57.073 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
2603 | 3179 | 4.820894 | AAGACCTAACCAAGCTAACGAT | 57.179 | 40.909 | 0.00 | 0.00 | 0.00 | 3.73 |
2604 | 3180 | 4.612264 | AAAGACCTAACCAAGCTAACGA | 57.388 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
2605 | 3181 | 5.684550 | AAAAAGACCTAACCAAGCTAACG | 57.315 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
2730 | 3310 | 2.049248 | GCATTGTGGCAACGGGTG | 60.049 | 61.111 | 0.00 | 0.00 | 42.51 | 4.61 |
2732 | 3312 | 2.990967 | AGGCATTGTGGCAACGGG | 60.991 | 61.111 | 6.28 | 0.00 | 46.46 | 5.28 |
2765 | 3346 | 5.897250 | TGGCATCAAGTACCTAAGATCACTA | 59.103 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2783 | 3364 | 4.460948 | AAATGATGGTTTGACTGGCATC | 57.539 | 40.909 | 0.00 | 0.00 | 0.00 | 3.91 |
2786 | 3367 | 4.782019 | TGTAAATGATGGTTTGACTGGC | 57.218 | 40.909 | 0.00 | 0.00 | 0.00 | 4.85 |
2818 | 3399 | 7.825331 | TGAAGCTAGTATTAGACAGCAGTAT | 57.175 | 36.000 | 0.00 | 0.00 | 35.72 | 2.12 |
2832 | 3413 | 9.502091 | AAGAAAACACAACATATGAAGCTAGTA | 57.498 | 29.630 | 10.38 | 0.00 | 0.00 | 1.82 |
2833 | 3414 | 7.986085 | AGAAAACACAACATATGAAGCTAGT | 57.014 | 32.000 | 10.38 | 0.00 | 0.00 | 2.57 |
2855 | 3436 | 9.368416 | AGCCTTCTGTACATCTGTATAATAAGA | 57.632 | 33.333 | 0.00 | 0.00 | 32.54 | 2.10 |
2859 | 3440 | 8.709308 | AGAAAGCCTTCTGTACATCTGTATAAT | 58.291 | 33.333 | 0.00 | 0.00 | 40.54 | 1.28 |
2860 | 3441 | 8.079211 | AGAAAGCCTTCTGTACATCTGTATAA | 57.921 | 34.615 | 0.00 | 0.00 | 40.54 | 0.98 |
2861 | 3442 | 7.661536 | AGAAAGCCTTCTGTACATCTGTATA | 57.338 | 36.000 | 0.00 | 0.00 | 40.54 | 1.47 |
2862 | 3443 | 6.552445 | AGAAAGCCTTCTGTACATCTGTAT | 57.448 | 37.500 | 0.00 | 0.00 | 40.54 | 2.29 |
2863 | 3444 | 6.360370 | AAGAAAGCCTTCTGTACATCTGTA | 57.640 | 37.500 | 0.00 | 0.00 | 41.23 | 2.74 |
2878 | 3469 | 2.083002 | CTGCTCTCCTGAAAGAAAGCC | 58.917 | 52.381 | 0.00 | 0.00 | 34.07 | 4.35 |
2895 | 3486 | 3.650409 | CCGATCAGGTACAGTCTGC | 57.350 | 57.895 | 0.00 | 0.00 | 34.51 | 4.26 |
2914 | 3505 | 1.134818 | AGCACGCGAGATGGTTGATTA | 60.135 | 47.619 | 15.93 | 0.00 | 0.00 | 1.75 |
2930 | 3521 | 2.758089 | CGGCAAGATGGCAGAGCAC | 61.758 | 63.158 | 4.75 | 0.00 | 43.94 | 4.40 |
2962 | 3553 | 9.660180 | AGATGTACAGAAAAGAAGAGTATTTCC | 57.340 | 33.333 | 0.33 | 0.00 | 34.39 | 3.13 |
2969 | 3560 | 5.406780 | ACGCAAGATGTACAGAAAAGAAGAG | 59.593 | 40.000 | 0.33 | 0.00 | 43.62 | 2.85 |
2984 | 3575 | 6.759261 | CGTAAAACAGAATTACGCAAGATG | 57.241 | 37.500 | 5.98 | 0.00 | 45.96 | 2.90 |
2992 | 3583 | 7.045804 | GCAGAATTACGCGTAAAACAGAATTAC | 60.046 | 37.037 | 32.89 | 15.75 | 0.00 | 1.89 |
2994 | 3585 | 5.793457 | GCAGAATTACGCGTAAAACAGAATT | 59.207 | 36.000 | 32.89 | 22.09 | 0.00 | 2.17 |
2995 | 3586 | 5.121768 | AGCAGAATTACGCGTAAAACAGAAT | 59.878 | 36.000 | 32.89 | 15.02 | 0.00 | 2.40 |
2996 | 3587 | 4.449743 | AGCAGAATTACGCGTAAAACAGAA | 59.550 | 37.500 | 32.89 | 13.26 | 0.00 | 3.02 |
2997 | 3588 | 3.991773 | AGCAGAATTACGCGTAAAACAGA | 59.008 | 39.130 | 32.89 | 12.16 | 0.00 | 3.41 |
2998 | 3589 | 4.081761 | CAGCAGAATTACGCGTAAAACAG | 58.918 | 43.478 | 32.89 | 24.50 | 0.00 | 3.16 |
3000 | 3591 | 2.838452 | GCAGCAGAATTACGCGTAAAAC | 59.162 | 45.455 | 32.89 | 26.70 | 0.00 | 2.43 |
3001 | 3592 | 2.159626 | GGCAGCAGAATTACGCGTAAAA | 60.160 | 45.455 | 32.89 | 16.39 | 0.00 | 1.52 |
3002 | 3593 | 1.395608 | GGCAGCAGAATTACGCGTAAA | 59.604 | 47.619 | 32.89 | 17.89 | 0.00 | 2.01 |
3003 | 3594 | 1.003851 | GGCAGCAGAATTACGCGTAA | 58.996 | 50.000 | 31.64 | 31.64 | 0.00 | 3.18 |
3004 | 3595 | 0.174845 | AGGCAGCAGAATTACGCGTA | 59.825 | 50.000 | 16.41 | 16.41 | 0.00 | 4.42 |
3005 | 3596 | 1.079127 | AGGCAGCAGAATTACGCGT | 60.079 | 52.632 | 19.17 | 19.17 | 0.00 | 6.01 |
3006 | 3597 | 1.349627 | CAGGCAGCAGAATTACGCG | 59.650 | 57.895 | 3.53 | 3.53 | 0.00 | 6.01 |
3007 | 3598 | 0.804989 | AACAGGCAGCAGAATTACGC | 59.195 | 50.000 | 0.00 | 0.00 | 0.00 | 4.42 |
3008 | 3599 | 3.559238 | AAAACAGGCAGCAGAATTACG | 57.441 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
3030 | 3621 | 4.295051 | GCTAACTGCATTTCGTCCAAAAA | 58.705 | 39.130 | 0.00 | 0.00 | 42.31 | 1.94 |
3031 | 3622 | 3.896122 | GCTAACTGCATTTCGTCCAAAA | 58.104 | 40.909 | 0.00 | 0.00 | 42.31 | 2.44 |
3032 | 3623 | 3.552604 | GCTAACTGCATTTCGTCCAAA | 57.447 | 42.857 | 0.00 | 0.00 | 42.31 | 3.28 |
3052 | 3643 | 3.466712 | CAATGACAGCAGTGCTAAGTG | 57.533 | 47.619 | 19.26 | 12.06 | 36.40 | 3.16 |
3059 | 3650 | 1.741706 | CTTAGGGCAATGACAGCAGTG | 59.258 | 52.381 | 0.00 | 0.00 | 42.66 | 3.66 |
3060 | 3651 | 1.630369 | TCTTAGGGCAATGACAGCAGT | 59.370 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
3061 | 3652 | 2.408271 | TCTTAGGGCAATGACAGCAG | 57.592 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3062 | 3653 | 2.618816 | CCTTCTTAGGGCAATGACAGCA | 60.619 | 50.000 | 0.00 | 0.00 | 37.94 | 4.41 |
3063 | 3654 | 2.019984 | CCTTCTTAGGGCAATGACAGC | 58.980 | 52.381 | 0.00 | 0.00 | 37.94 | 4.40 |
3084 | 3675 | 4.893424 | TGCTGTACTTTGGTTGAAGAAC | 57.107 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
3085 | 3676 | 7.360861 | CGATTATGCTGTACTTTGGTTGAAGAA | 60.361 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
3086 | 3677 | 6.092122 | CGATTATGCTGTACTTTGGTTGAAGA | 59.908 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
3087 | 3678 | 6.092122 | TCGATTATGCTGTACTTTGGTTGAAG | 59.908 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
3088 | 3679 | 5.935206 | TCGATTATGCTGTACTTTGGTTGAA | 59.065 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3089 | 3680 | 5.483811 | TCGATTATGCTGTACTTTGGTTGA | 58.516 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
3090 | 3681 | 5.794687 | TCGATTATGCTGTACTTTGGTTG | 57.205 | 39.130 | 0.00 | 0.00 | 0.00 | 3.77 |
3091 | 3682 | 8.677148 | ATTATCGATTATGCTGTACTTTGGTT | 57.323 | 30.769 | 1.71 | 0.00 | 0.00 | 3.67 |
3092 | 3683 | 7.931407 | TGATTATCGATTATGCTGTACTTTGGT | 59.069 | 33.333 | 1.71 | 0.00 | 0.00 | 3.67 |
3093 | 3684 | 8.310406 | TGATTATCGATTATGCTGTACTTTGG | 57.690 | 34.615 | 1.71 | 0.00 | 0.00 | 3.28 |
3094 | 3685 | 8.982685 | ACTGATTATCGATTATGCTGTACTTTG | 58.017 | 33.333 | 1.71 | 0.00 | 0.00 | 2.77 |
3095 | 3686 | 9.197694 | GACTGATTATCGATTATGCTGTACTTT | 57.802 | 33.333 | 1.71 | 0.00 | 0.00 | 2.66 |
3096 | 3687 | 7.539022 | CGACTGATTATCGATTATGCTGTACTT | 59.461 | 37.037 | 1.71 | 0.00 | 42.25 | 2.24 |
3097 | 3688 | 7.024171 | CGACTGATTATCGATTATGCTGTACT | 58.976 | 38.462 | 1.71 | 0.00 | 42.25 | 2.73 |
3098 | 3689 | 6.251589 | CCGACTGATTATCGATTATGCTGTAC | 59.748 | 42.308 | 1.71 | 0.00 | 42.25 | 2.90 |
3099 | 3690 | 6.322491 | CCGACTGATTATCGATTATGCTGTA | 58.678 | 40.000 | 1.71 | 0.00 | 42.25 | 2.74 |
3100 | 3691 | 5.164233 | CCGACTGATTATCGATTATGCTGT | 58.836 | 41.667 | 1.71 | 4.91 | 42.25 | 4.40 |
3101 | 3692 | 4.564372 | CCCGACTGATTATCGATTATGCTG | 59.436 | 45.833 | 1.71 | 1.89 | 42.25 | 4.41 |
3102 | 3693 | 4.748892 | CCCGACTGATTATCGATTATGCT | 58.251 | 43.478 | 1.71 | 0.00 | 42.25 | 3.79 |
3103 | 3694 | 3.307242 | GCCCGACTGATTATCGATTATGC | 59.693 | 47.826 | 1.71 | 0.00 | 42.25 | 3.14 |
3104 | 3695 | 4.748892 | AGCCCGACTGATTATCGATTATG | 58.251 | 43.478 | 1.71 | 0.00 | 42.25 | 1.90 |
3117 | 3708 | 4.742201 | CCGACACCAGCCCGACTG | 62.742 | 72.222 | 0.00 | 0.00 | 46.77 | 3.51 |
3133 | 3724 | 2.883267 | CTAGAGTGCAGGCCTTGGCC | 62.883 | 65.000 | 22.29 | 22.29 | 0.00 | 5.36 |
3134 | 3725 | 1.451028 | CTAGAGTGCAGGCCTTGGC | 60.451 | 63.158 | 0.00 | 5.00 | 0.00 | 4.52 |
3135 | 3726 | 0.392193 | CACTAGAGTGCAGGCCTTGG | 60.392 | 60.000 | 0.00 | 0.00 | 39.39 | 3.61 |
3136 | 3727 | 3.149899 | CACTAGAGTGCAGGCCTTG | 57.850 | 57.895 | 0.00 | 0.00 | 39.39 | 3.61 |
3155 | 3746 | 1.756950 | AATGGGCTGATGCTGGCAG | 60.757 | 57.895 | 10.94 | 10.94 | 39.59 | 4.85 |
3156 | 3747 | 2.055633 | CAATGGGCTGATGCTGGCA | 61.056 | 57.895 | 0.00 | 0.00 | 39.59 | 4.92 |
3157 | 3748 | 1.755395 | TCAATGGGCTGATGCTGGC | 60.755 | 57.895 | 0.00 | 0.00 | 39.59 | 4.85 |
3158 | 3749 | 1.721664 | CGTCAATGGGCTGATGCTGG | 61.722 | 60.000 | 0.00 | 0.00 | 39.59 | 4.85 |
3159 | 3750 | 0.745486 | TCGTCAATGGGCTGATGCTG | 60.745 | 55.000 | 0.00 | 0.00 | 39.59 | 4.41 |
3160 | 3751 | 0.463295 | CTCGTCAATGGGCTGATGCT | 60.463 | 55.000 | 0.00 | 0.00 | 39.59 | 3.79 |
3161 | 3752 | 2.020131 | CTCGTCAATGGGCTGATGC | 58.980 | 57.895 | 0.00 | 0.00 | 33.16 | 3.91 |
3162 | 3753 | 0.463295 | AGCTCGTCAATGGGCTGATG | 60.463 | 55.000 | 0.00 | 0.00 | 33.50 | 3.07 |
3163 | 3754 | 0.254178 | AAGCTCGTCAATGGGCTGAT | 59.746 | 50.000 | 0.00 | 0.00 | 35.08 | 2.90 |
3164 | 3755 | 0.391661 | GAAGCTCGTCAATGGGCTGA | 60.392 | 55.000 | 0.00 | 0.00 | 35.08 | 4.26 |
3165 | 3756 | 1.699656 | CGAAGCTCGTCAATGGGCTG | 61.700 | 60.000 | 0.00 | 0.00 | 34.72 | 4.85 |
3166 | 3757 | 1.448540 | CGAAGCTCGTCAATGGGCT | 60.449 | 57.895 | 0.00 | 0.00 | 34.72 | 5.19 |
3167 | 3758 | 1.424493 | CTCGAAGCTCGTCAATGGGC | 61.424 | 60.000 | 0.00 | 0.00 | 41.35 | 5.36 |
3168 | 3759 | 1.424493 | GCTCGAAGCTCGTCAATGGG | 61.424 | 60.000 | 0.00 | 0.00 | 41.35 | 4.00 |
3169 | 3760 | 2.002127 | GCTCGAAGCTCGTCAATGG | 58.998 | 57.895 | 0.00 | 0.00 | 41.35 | 3.16 |
3186 | 3777 | 0.110010 | GTCTTCCGCAAAGCTTCAGC | 60.110 | 55.000 | 12.46 | 12.46 | 42.49 | 4.26 |
3187 | 3778 | 0.164647 | CGTCTTCCGCAAAGCTTCAG | 59.835 | 55.000 | 0.00 | 0.00 | 34.76 | 3.02 |
3188 | 3779 | 0.249699 | TCGTCTTCCGCAAAGCTTCA | 60.250 | 50.000 | 0.00 | 0.00 | 34.76 | 3.02 |
3189 | 3780 | 1.061276 | GATCGTCTTCCGCAAAGCTTC | 59.939 | 52.381 | 0.00 | 0.00 | 34.76 | 3.86 |
3190 | 3781 | 1.079503 | GATCGTCTTCCGCAAAGCTT | 58.920 | 50.000 | 0.00 | 0.00 | 34.76 | 3.74 |
3191 | 3782 | 1.078759 | CGATCGTCTTCCGCAAAGCT | 61.079 | 55.000 | 7.03 | 0.00 | 34.76 | 3.74 |
3192 | 3783 | 1.345176 | CGATCGTCTTCCGCAAAGC | 59.655 | 57.895 | 7.03 | 0.00 | 34.76 | 3.51 |
3193 | 3784 | 0.366871 | CACGATCGTCTTCCGCAAAG | 59.633 | 55.000 | 19.84 | 0.00 | 36.19 | 2.77 |
3194 | 3785 | 0.038983 | TCACGATCGTCTTCCGCAAA | 60.039 | 50.000 | 19.84 | 0.00 | 36.19 | 3.68 |
3195 | 3786 | 0.731514 | GTCACGATCGTCTTCCGCAA | 60.732 | 55.000 | 19.84 | 0.00 | 36.19 | 4.85 |
3196 | 3787 | 1.154093 | GTCACGATCGTCTTCCGCA | 60.154 | 57.895 | 19.84 | 0.00 | 36.19 | 5.69 |
3197 | 3788 | 1.872679 | GGTCACGATCGTCTTCCGC | 60.873 | 63.158 | 19.84 | 4.86 | 36.19 | 5.54 |
3198 | 3789 | 0.109458 | TTGGTCACGATCGTCTTCCG | 60.109 | 55.000 | 19.84 | 7.01 | 38.13 | 4.30 |
3199 | 3790 | 1.630148 | CTTGGTCACGATCGTCTTCC | 58.370 | 55.000 | 19.84 | 19.64 | 0.00 | 3.46 |
3200 | 3791 | 1.630148 | CCTTGGTCACGATCGTCTTC | 58.370 | 55.000 | 19.84 | 11.21 | 0.00 | 2.87 |
3201 | 3792 | 0.389948 | GCCTTGGTCACGATCGTCTT | 60.390 | 55.000 | 19.84 | 0.00 | 0.00 | 3.01 |
3202 | 3793 | 1.215647 | GCCTTGGTCACGATCGTCT | 59.784 | 57.895 | 19.84 | 0.00 | 0.00 | 4.18 |
3203 | 3794 | 0.460284 | ATGCCTTGGTCACGATCGTC | 60.460 | 55.000 | 19.84 | 8.21 | 0.00 | 4.20 |
3204 | 3795 | 0.821517 | TATGCCTTGGTCACGATCGT | 59.178 | 50.000 | 16.60 | 16.60 | 0.00 | 3.73 |
3205 | 3796 | 1.202417 | ACTATGCCTTGGTCACGATCG | 60.202 | 52.381 | 14.88 | 14.88 | 0.00 | 3.69 |
3206 | 3797 | 2.205074 | CACTATGCCTTGGTCACGATC | 58.795 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
3207 | 3798 | 1.743772 | GCACTATGCCTTGGTCACGAT | 60.744 | 52.381 | 0.00 | 0.00 | 37.42 | 3.73 |
3208 | 3799 | 0.391130 | GCACTATGCCTTGGTCACGA | 60.391 | 55.000 | 0.00 | 0.00 | 37.42 | 4.35 |
3209 | 3800 | 0.391661 | AGCACTATGCCTTGGTCACG | 60.392 | 55.000 | 0.00 | 0.00 | 46.52 | 4.35 |
3210 | 3801 | 1.470098 | CAAGCACTATGCCTTGGTCAC | 59.530 | 52.381 | 0.00 | 0.00 | 46.52 | 3.67 |
3211 | 3802 | 1.825090 | CAAGCACTATGCCTTGGTCA | 58.175 | 50.000 | 0.00 | 0.00 | 46.52 | 4.02 |
3212 | 3803 | 0.453390 | GCAAGCACTATGCCTTGGTC | 59.547 | 55.000 | 11.99 | 0.00 | 46.52 | 4.02 |
3213 | 3804 | 2.571548 | GCAAGCACTATGCCTTGGT | 58.428 | 52.632 | 11.99 | 0.00 | 46.52 | 3.67 |
3219 | 3810 | 2.730550 | AAAACAGGCAAGCACTATGC | 57.269 | 45.000 | 0.00 | 0.00 | 45.46 | 3.14 |
3220 | 3811 | 7.088589 | ACTATAAAAACAGGCAAGCACTATG | 57.911 | 36.000 | 0.00 | 0.00 | 0.00 | 2.23 |
3221 | 3812 | 7.611855 | AGAACTATAAAAACAGGCAAGCACTAT | 59.388 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
3222 | 3813 | 6.940298 | AGAACTATAAAAACAGGCAAGCACTA | 59.060 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
3223 | 3814 | 5.770162 | AGAACTATAAAAACAGGCAAGCACT | 59.230 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3224 | 3815 | 6.013842 | AGAACTATAAAAACAGGCAAGCAC | 57.986 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
3225 | 3816 | 5.106712 | CGAGAACTATAAAAACAGGCAAGCA | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
3226 | 3817 | 5.106673 | ACGAGAACTATAAAAACAGGCAAGC | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
3227 | 3818 | 6.307155 | CACGAGAACTATAAAAACAGGCAAG | 58.693 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
3228 | 3819 | 5.180492 | CCACGAGAACTATAAAAACAGGCAA | 59.820 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
3229 | 3820 | 4.693566 | CCACGAGAACTATAAAAACAGGCA | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 4.75 |
3230 | 3821 | 4.694037 | ACCACGAGAACTATAAAAACAGGC | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
3231 | 3822 | 6.204108 | ACAACCACGAGAACTATAAAAACAGG | 59.796 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
3232 | 3823 | 7.069569 | CACAACCACGAGAACTATAAAAACAG | 58.930 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
3233 | 3824 | 6.017770 | CCACAACCACGAGAACTATAAAAACA | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
3234 | 3825 | 6.368213 | CCACAACCACGAGAACTATAAAAAC | 58.632 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3235 | 3826 | 5.049267 | GCCACAACCACGAGAACTATAAAAA | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3236 | 3827 | 4.453136 | GCCACAACCACGAGAACTATAAAA | 59.547 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
3237 | 3828 | 3.998341 | GCCACAACCACGAGAACTATAAA | 59.002 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
3238 | 3829 | 3.592059 | GCCACAACCACGAGAACTATAA | 58.408 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
3239 | 3830 | 2.093869 | GGCCACAACCACGAGAACTATA | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 1.31 |
3240 | 3831 | 1.338769 | GGCCACAACCACGAGAACTAT | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 2.12 |
3241 | 3832 | 0.034337 | GGCCACAACCACGAGAACTA | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3242 | 3833 | 1.227853 | GGCCACAACCACGAGAACT | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
3243 | 3834 | 2.604174 | CGGCCACAACCACGAGAAC | 61.604 | 63.158 | 2.24 | 0.00 | 0.00 | 3.01 |
3244 | 3835 | 2.280524 | CGGCCACAACCACGAGAA | 60.281 | 61.111 | 2.24 | 0.00 | 0.00 | 2.87 |
3245 | 3836 | 4.308458 | CCGGCCACAACCACGAGA | 62.308 | 66.667 | 2.24 | 0.00 | 0.00 | 4.04 |
3246 | 3837 | 3.605749 | ATCCGGCCACAACCACGAG | 62.606 | 63.158 | 2.24 | 0.00 | 0.00 | 4.18 |
3247 | 3838 | 3.185299 | AATCCGGCCACAACCACGA | 62.185 | 57.895 | 2.24 | 0.00 | 0.00 | 4.35 |
3248 | 3839 | 2.671619 | AATCCGGCCACAACCACG | 60.672 | 61.111 | 2.24 | 0.00 | 0.00 | 4.94 |
3249 | 3840 | 1.460273 | AACAATCCGGCCACAACCAC | 61.460 | 55.000 | 2.24 | 0.00 | 0.00 | 4.16 |
3250 | 3841 | 0.110678 | TAACAATCCGGCCACAACCA | 59.889 | 50.000 | 2.24 | 0.00 | 0.00 | 3.67 |
3251 | 3842 | 0.524414 | GTAACAATCCGGCCACAACC | 59.476 | 55.000 | 2.24 | 0.00 | 0.00 | 3.77 |
3252 | 3843 | 1.240256 | TGTAACAATCCGGCCACAAC | 58.760 | 50.000 | 2.24 | 0.00 | 0.00 | 3.32 |
3253 | 3844 | 2.208132 | ATGTAACAATCCGGCCACAA | 57.792 | 45.000 | 2.24 | 0.00 | 0.00 | 3.33 |
3254 | 3845 | 2.088423 | GAATGTAACAATCCGGCCACA | 58.912 | 47.619 | 2.24 | 0.00 | 0.00 | 4.17 |
3255 | 3846 | 2.097466 | CAGAATGTAACAATCCGGCCAC | 59.903 | 50.000 | 2.24 | 0.00 | 0.00 | 5.01 |
3256 | 3847 | 2.364632 | CAGAATGTAACAATCCGGCCA | 58.635 | 47.619 | 2.24 | 0.00 | 0.00 | 5.36 |
3257 | 3848 | 1.065551 | GCAGAATGTAACAATCCGGCC | 59.934 | 52.381 | 0.00 | 0.00 | 39.31 | 6.13 |
3258 | 3849 | 2.017049 | AGCAGAATGTAACAATCCGGC | 58.983 | 47.619 | 0.00 | 0.00 | 39.31 | 6.13 |
3259 | 3850 | 2.355756 | CCAGCAGAATGTAACAATCCGG | 59.644 | 50.000 | 0.00 | 0.00 | 39.31 | 5.14 |
3260 | 3851 | 2.355756 | CCCAGCAGAATGTAACAATCCG | 59.644 | 50.000 | 0.00 | 0.00 | 39.31 | 4.18 |
3261 | 3852 | 3.356290 | ACCCAGCAGAATGTAACAATCC | 58.644 | 45.455 | 0.00 | 0.00 | 39.31 | 3.01 |
3262 | 3853 | 4.009675 | TGACCCAGCAGAATGTAACAATC | 58.990 | 43.478 | 0.00 | 0.00 | 39.31 | 2.67 |
3263 | 3854 | 4.032960 | TGACCCAGCAGAATGTAACAAT | 57.967 | 40.909 | 0.00 | 0.00 | 39.31 | 2.71 |
3264 | 3855 | 3.500448 | TGACCCAGCAGAATGTAACAA | 57.500 | 42.857 | 0.00 | 0.00 | 39.31 | 2.83 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.