Multiple sequence alignment - TraesCS4A01G482500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G482500 chr4A 100.000 3143 0 0 1 3143 737739491 737736349 0.000000e+00 5805.0
1 TraesCS4A01G482500 chr4A 89.351 2695 173 53 47 2673 737943716 737946364 0.000000e+00 3282.0
2 TraesCS4A01G482500 chr4A 86.090 1675 173 32 1027 2673 738670015 738671657 0.000000e+00 1748.0
3 TraesCS4A01G482500 chr4A 82.253 1358 219 14 795 2143 738719560 738718216 0.000000e+00 1153.0
4 TraesCS4A01G482500 chr4A 77.574 1146 210 29 1002 2133 737829363 737828251 0.000000e+00 649.0
5 TraesCS4A01G482500 chr4A 76.851 1067 214 21 1030 2095 738710780 738711814 3.520000e-159 571.0
6 TraesCS4A01G482500 chr4A 95.745 47 1 1 5 50 713877287 713877241 1.210000e-09 75.0
7 TraesCS4A01G482500 chr7A 89.772 1271 114 5 936 2196 4993613 4992349 0.000000e+00 1613.0
8 TraesCS4A01G482500 chr7A 79.882 2028 283 61 174 2143 4975283 4973323 0.000000e+00 1369.0
9 TraesCS4A01G482500 chr7A 87.072 1052 88 14 712 1742 5053085 5052061 0.000000e+00 1146.0
10 TraesCS4A01G482500 chr7A 78.728 1368 210 42 1030 2367 5910706 5912022 0.000000e+00 839.0
11 TraesCS4A01G482500 chr7A 85.616 730 61 27 1751 2448 5051930 5051213 0.000000e+00 726.0
12 TraesCS4A01G482500 chr7A 78.877 1122 168 48 1027 2133 5430050 5428983 0.000000e+00 695.0
13 TraesCS4A01G482500 chr7A 82.895 532 76 8 1055 1580 5750369 5750891 6.140000e-127 464.0
14 TraesCS4A01G482500 chr7A 82.130 554 65 22 2408 2951 4991908 4991379 8.000000e-121 444.0
15 TraesCS4A01G482500 chr7A 79.907 428 69 9 1711 2130 5600296 5600714 6.590000e-77 298.0
16 TraesCS4A01G482500 chr7A 81.351 370 62 3 1762 2130 6277492 6277855 8.520000e-76 294.0
17 TraesCS4A01G482500 chr7A 91.837 196 12 4 2952 3143 611317463 611317658 1.440000e-68 270.0
18 TraesCS4A01G482500 chr7A 94.000 100 6 0 2372 2471 5752260 5752359 5.430000e-33 152.0
19 TraesCS4A01G482500 chr7A 79.149 235 32 12 2189 2409 4992191 4991960 2.530000e-31 147.0
20 TraesCS4A01G482500 chr3B 93.596 203 9 4 2945 3143 13735247 13735449 1.830000e-77 300.0
21 TraesCS4A01G482500 chr3B 92.857 196 8 6 2949 3138 592869804 592869609 2.390000e-71 279.0
22 TraesCS4A01G482500 chrUn 81.351 370 62 3 1762 2130 334640866 334641229 8.520000e-76 294.0
23 TraesCS4A01G482500 chrUn 92.857 196 10 4 2952 3143 8798102 8798297 6.640000e-72 281.0
24 TraesCS4A01G482500 chr1B 94.301 193 9 2 2951 3143 419404765 419404955 8.520000e-76 294.0
25 TraesCS4A01G482500 chr6B 93.069 202 9 5 2947 3143 46663164 46663365 1.100000e-74 291.0
26 TraesCS4A01G482500 chr6B 92.040 201 10 6 2949 3143 687058609 687058809 8.590000e-71 278.0
27 TraesCS4A01G482500 chr5B 92.424 198 11 4 2950 3143 437922170 437922367 2.390000e-71 279.0
28 TraesCS4A01G482500 chr5B 93.878 49 3 0 1 49 534255472 534255520 1.210000e-09 75.0
29 TraesCS4A01G482500 chr2B 92.821 195 9 5 2952 3142 30563908 30564101 8.590000e-71 278.0
30 TraesCS4A01G482500 chr7D 97.917 48 1 0 1 48 514905101 514905148 2.010000e-12 84.2
31 TraesCS4A01G482500 chr1D 96.000 50 2 0 1 50 18148811 18148860 7.220000e-12 82.4
32 TraesCS4A01G482500 chr7B 97.872 47 0 1 7 52 658168882 658168928 2.600000e-11 80.5
33 TraesCS4A01G482500 chr6A 95.745 47 2 0 1 47 569181170 569181216 3.360000e-10 76.8
34 TraesCS4A01G482500 chr1A 97.778 45 0 1 7 50 257621522 257621478 3.360000e-10 76.8
35 TraesCS4A01G482500 chr2D 95.455 44 2 0 7 50 130982255 130982298 1.560000e-08 71.3
36 TraesCS4A01G482500 chr2D 89.091 55 6 0 12 66 379989269 379989215 5.620000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G482500 chr4A 737736349 737739491 3142 True 5805.000000 5805 100.000000 1 3143 1 chr4A.!!$R2 3142
1 TraesCS4A01G482500 chr4A 737943716 737946364 2648 False 3282.000000 3282 89.351000 47 2673 1 chr4A.!!$F1 2626
2 TraesCS4A01G482500 chr4A 738670015 738671657 1642 False 1748.000000 1748 86.090000 1027 2673 1 chr4A.!!$F2 1646
3 TraesCS4A01G482500 chr4A 738718216 738719560 1344 True 1153.000000 1153 82.253000 795 2143 1 chr4A.!!$R4 1348
4 TraesCS4A01G482500 chr4A 737828251 737829363 1112 True 649.000000 649 77.574000 1002 2133 1 chr4A.!!$R3 1131
5 TraesCS4A01G482500 chr4A 738710780 738711814 1034 False 571.000000 571 76.851000 1030 2095 1 chr4A.!!$F3 1065
6 TraesCS4A01G482500 chr7A 4973323 4975283 1960 True 1369.000000 1369 79.882000 174 2143 1 chr7A.!!$R1 1969
7 TraesCS4A01G482500 chr7A 5051213 5053085 1872 True 936.000000 1146 86.344000 712 2448 2 chr7A.!!$R4 1736
8 TraesCS4A01G482500 chr7A 5910706 5912022 1316 False 839.000000 839 78.728000 1030 2367 1 chr7A.!!$F2 1337
9 TraesCS4A01G482500 chr7A 4991379 4993613 2234 True 734.666667 1613 83.683667 936 2951 3 chr7A.!!$R3 2015
10 TraesCS4A01G482500 chr7A 5428983 5430050 1067 True 695.000000 695 78.877000 1027 2133 1 chr7A.!!$R2 1106
11 TraesCS4A01G482500 chr7A 5750369 5752359 1990 False 308.000000 464 88.447500 1055 2471 2 chr7A.!!$F5 1416

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 755 0.107456 ATCATGTCGGAGCATGTCCC 59.893 55.0 15.34 2.84 43.47 4.46 F
773 841 0.396435 ACCGCCAGTTTCAGATCACA 59.604 50.0 0.00 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1823 2833 0.251354 CTCCACTAGCAGCACACCAT 59.749 55.0 0.0 0.0 0.00 3.55 R
2432 3850 0.320421 TTCGGTAGTTCAGTGCTGCC 60.320 55.0 0.0 0.0 35.73 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.624169 TTGAAGAAAAGGACGGGCG 58.376 52.632 0.00 0.00 0.00 6.13
19 20 1.512156 TTGAAGAAAAGGACGGGCGC 61.512 55.000 0.00 0.00 0.00 6.53
20 21 3.023591 GAAGAAAAGGACGGGCGCG 62.024 63.158 22.69 22.69 0.00 6.86
38 39 4.834892 GCAACGCGCGCCATCAAT 62.835 61.111 32.58 5.07 0.00 2.57
39 40 2.945576 CAACGCGCGCCATCAATG 60.946 61.111 32.58 12.27 0.00 2.82
40 41 3.124270 AACGCGCGCCATCAATGA 61.124 55.556 32.58 0.00 0.00 2.57
41 42 2.472059 AACGCGCGCCATCAATGAT 61.472 52.632 32.58 2.28 0.00 2.45
42 43 2.127496 CGCGCGCCATCAATGATC 60.127 61.111 27.72 0.00 0.00 2.92
43 44 2.601398 CGCGCGCCATCAATGATCT 61.601 57.895 27.72 0.00 0.00 2.75
44 45 1.284297 CGCGCGCCATCAATGATCTA 61.284 55.000 27.72 0.00 0.00 1.98
45 46 0.441533 GCGCGCCATCAATGATCTAG 59.558 55.000 23.24 0.00 0.00 2.43
77 78 5.398012 GGAAAAGTTGGCAGATAGATAGGGT 60.398 44.000 0.00 0.00 0.00 4.34
83 84 3.096092 GGCAGATAGATAGGGTCCTCTG 58.904 54.545 0.00 0.00 38.89 3.35
84 85 2.495669 GCAGATAGATAGGGTCCTCTGC 59.504 54.545 10.30 10.30 46.71 4.26
88 89 2.380064 AGATAGGGTCCTCTGCTCAG 57.620 55.000 0.00 0.00 0.00 3.35
113 114 2.047061 GTGGACATGGATGCCTACCTA 58.953 52.381 0.00 0.00 0.00 3.08
157 158 1.206610 CCACACCACCTCATCTCTCTG 59.793 57.143 0.00 0.00 0.00 3.35
209 215 2.839043 TACATCGGCGTTGGGTTCGG 62.839 60.000 20.71 0.00 0.00 4.30
260 266 0.899019 GGAGAGGTTGTCTGGTCTCC 59.101 60.000 1.60 1.60 46.35 3.71
433 474 1.934220 CTTCGAGCTCCCGTGCACTA 61.934 60.000 16.19 0.00 34.99 2.74
441 482 3.254654 CCGTGCACTACATCGCCG 61.255 66.667 16.19 0.00 0.00 6.46
442 483 3.913573 CGTGCACTACATCGCCGC 61.914 66.667 16.19 0.00 0.00 6.53
556 597 5.103301 TCCTCTCCTCTCCATCTACATTTCT 60.103 44.000 0.00 0.00 0.00 2.52
595 641 3.622206 GCCTCTTCTCTCTCTCTCAGTGA 60.622 52.174 0.00 0.00 0.00 3.41
640 687 1.808945 CTGCAGCTGGGTTCTTACTTG 59.191 52.381 17.12 0.00 0.00 3.16
671 720 5.559770 TCTCATCTGATTTGCACCAGTAAA 58.440 37.500 9.05 0.00 33.85 2.01
678 727 6.433716 TCTGATTTGCACCAGTAAATGAATCA 59.566 34.615 9.05 6.44 39.66 2.57
680 729 7.036829 TGATTTGCACCAGTAAATGAATCATG 58.963 34.615 0.00 0.00 39.66 3.07
681 730 5.981088 TTGCACCAGTAAATGAATCATGT 57.019 34.783 0.00 0.00 0.00 3.21
682 731 5.565592 TGCACCAGTAAATGAATCATGTC 57.434 39.130 0.00 0.00 0.00 3.06
683 732 4.094739 TGCACCAGTAAATGAATCATGTCG 59.905 41.667 0.00 0.00 0.00 4.35
687 748 4.024556 CCAGTAAATGAATCATGTCGGAGC 60.025 45.833 0.00 0.00 0.00 4.70
692 753 2.554142 TGAATCATGTCGGAGCATGTC 58.446 47.619 15.34 10.08 44.68 3.06
694 755 0.107456 ATCATGTCGGAGCATGTCCC 59.893 55.000 15.34 2.84 43.47 4.46
696 757 1.995066 ATGTCGGAGCATGTCCCCA 60.995 57.895 8.25 6.38 43.47 4.96
710 771 8.392631 AGCATGTCCCCATTGTAGAATATATA 57.607 34.615 0.00 0.00 0.00 0.86
751 819 7.229581 AGTAGTAGGTTATAATAGGTGCAGC 57.770 40.000 8.11 8.11 0.00 5.25
772 840 2.271800 CTACCGCCAGTTTCAGATCAC 58.728 52.381 0.00 0.00 0.00 3.06
773 841 0.396435 ACCGCCAGTTTCAGATCACA 59.604 50.000 0.00 0.00 0.00 3.58
788 867 8.675705 TTCAGATCACAATTTCAGTAGTTTGA 57.324 30.769 0.00 0.00 0.00 2.69
860 943 7.559590 ACTAATTACAAACATGCATCTCTCC 57.440 36.000 0.00 0.00 0.00 3.71
864 947 8.757982 AATTACAAACATGCATCTCTCCTTAT 57.242 30.769 0.00 0.00 0.00 1.73
966 1061 5.897377 AATAGGTTTGCAGGTTGATACAC 57.103 39.130 0.00 0.00 0.00 2.90
967 1062 2.151202 AGGTTTGCAGGTTGATACACG 58.849 47.619 0.00 0.00 0.00 4.49
987 1092 0.830444 ACCTCTTCACGCACTACCCA 60.830 55.000 0.00 0.00 0.00 4.51
989 1094 0.603569 CTCTTCACGCACTACCCAGT 59.396 55.000 0.00 0.00 34.42 4.00
992 1097 1.457823 TTCACGCACTACCCAGTCGT 61.458 55.000 0.00 0.00 38.32 4.34
1154 1262 5.951747 ACATAATACAGGTTCAAGGCATTGT 59.048 36.000 11.36 0.00 37.68 2.71
1396 1513 4.402851 GGCTGCACCAACAGATGA 57.597 55.556 0.50 0.00 40.25 2.92
1614 1731 1.609555 GACCAACCGTTGCCAATTGTA 59.390 47.619 5.68 0.00 0.00 2.41
1823 2833 5.067413 CGGAGAAGGTAGACATTTACAGCTA 59.933 44.000 0.00 0.00 0.00 3.32
2282 3624 6.265196 TGAGAACATTTTGCTATCCTGTTGTT 59.735 34.615 0.00 0.00 30.63 2.83
2357 3707 3.281727 ACTTGTGAGGACTTGAGCAAA 57.718 42.857 0.00 0.00 0.00 3.68
2400 3765 3.719268 TGTTACATTCTGCAGGGTCAT 57.281 42.857 15.13 0.00 0.00 3.06
2425 3843 7.754625 TGTTTTATATTTACGTTCCTTCTGCC 58.245 34.615 0.00 0.00 0.00 4.85
2432 3850 0.734253 CGTTCCTTCTGCCGACTGAG 60.734 60.000 0.00 0.00 0.00 3.35
2494 3912 8.540388 ACTATATCTGTGTTTAGCTTGGAGAAA 58.460 33.333 0.00 0.00 0.00 2.52
2497 3915 6.560253 TCTGTGTTTAGCTTGGAGAAAATC 57.440 37.500 0.00 0.00 0.00 2.17
2523 3973 6.032956 TCAACGGTCATCACTATTGTTAGT 57.967 37.500 0.00 0.00 39.30 2.24
2526 3976 7.758076 TCAACGGTCATCACTATTGTTAGTTAG 59.242 37.037 0.00 0.00 36.50 2.34
2527 3977 6.570692 ACGGTCATCACTATTGTTAGTTAGG 58.429 40.000 0.00 0.00 36.50 2.69
2534 3984 7.504926 TCACTATTGTTAGTTAGGGGTTCAT 57.495 36.000 0.00 0.00 36.50 2.57
2558 4008 3.694043 TTTTTATGGCCCCTTCTTTGC 57.306 42.857 0.00 0.00 0.00 3.68
2559 4009 2.317371 TTTATGGCCCCTTCTTTGCA 57.683 45.000 0.00 0.00 0.00 4.08
2560 4010 2.317371 TTATGGCCCCTTCTTTGCAA 57.683 45.000 0.00 0.00 0.00 4.08
2561 4011 2.317371 TATGGCCCCTTCTTTGCAAA 57.683 45.000 12.14 12.14 0.00 3.68
2562 4012 1.433121 ATGGCCCCTTCTTTGCAAAA 58.567 45.000 13.84 0.00 0.00 2.44
2565 4015 2.153645 GGCCCCTTCTTTGCAAAATTG 58.846 47.619 13.84 1.77 0.00 2.32
2566 4016 2.487086 GGCCCCTTCTTTGCAAAATTGT 60.487 45.455 13.84 0.00 0.00 2.71
2568 4018 3.003585 GCCCCTTCTTTGCAAAATTGTTG 59.996 43.478 13.84 0.21 0.00 3.33
2569 4019 4.198530 CCCCTTCTTTGCAAAATTGTTGT 58.801 39.130 13.84 0.00 0.00 3.32
2570 4020 5.363939 CCCCTTCTTTGCAAAATTGTTGTA 58.636 37.500 13.84 0.00 0.00 2.41
2571 4021 5.997129 CCCCTTCTTTGCAAAATTGTTGTAT 59.003 36.000 13.84 0.00 0.00 2.29
2572 4022 6.073112 CCCCTTCTTTGCAAAATTGTTGTATG 60.073 38.462 13.84 0.00 0.00 2.39
2573 4023 6.365050 CCTTCTTTGCAAAATTGTTGTATGC 58.635 36.000 13.84 0.00 37.52 3.14
2639 4089 6.127083 CCCATATTGCTTTTTAATCAGGGTGT 60.127 38.462 0.00 0.00 31.86 4.16
2663 4114 2.942376 CTGCCATATCCGTTGCTACAAA 59.058 45.455 0.00 0.00 0.00 2.83
2664 4115 3.550820 TGCCATATCCGTTGCTACAAAT 58.449 40.909 0.00 0.00 0.00 2.32
2665 4116 3.314913 TGCCATATCCGTTGCTACAAATG 59.685 43.478 0.00 0.00 0.00 2.32
2667 4118 3.304659 CCATATCCGTTGCTACAAATGCC 60.305 47.826 0.00 0.00 0.00 4.40
2670 4121 0.451783 CCGTTGCTACAAATGCCTCC 59.548 55.000 0.00 0.00 0.00 4.30
2672 4123 1.812571 CGTTGCTACAAATGCCTCCTT 59.187 47.619 0.00 0.00 0.00 3.36
2673 4124 2.228822 CGTTGCTACAAATGCCTCCTTT 59.771 45.455 0.00 0.00 0.00 3.11
2674 4125 3.670627 CGTTGCTACAAATGCCTCCTTTC 60.671 47.826 0.00 0.00 0.00 2.62
2675 4126 2.083774 TGCTACAAATGCCTCCTTTCG 58.916 47.619 0.00 0.00 0.00 3.46
2676 4127 2.084546 GCTACAAATGCCTCCTTTCGT 58.915 47.619 0.00 0.00 0.00 3.85
2677 4128 2.096013 GCTACAAATGCCTCCTTTCGTC 59.904 50.000 0.00 0.00 0.00 4.20
2678 4129 2.270352 ACAAATGCCTCCTTTCGTCA 57.730 45.000 0.00 0.00 0.00 4.35
2679 4130 2.582052 ACAAATGCCTCCTTTCGTCAA 58.418 42.857 0.00 0.00 0.00 3.18
2680 4131 2.293399 ACAAATGCCTCCTTTCGTCAAC 59.707 45.455 0.00 0.00 0.00 3.18
2681 4132 1.534729 AATGCCTCCTTTCGTCAACC 58.465 50.000 0.00 0.00 0.00 3.77
2683 4134 0.400213 TGCCTCCTTTCGTCAACCAT 59.600 50.000 0.00 0.00 0.00 3.55
2684 4135 0.804989 GCCTCCTTTCGTCAACCATG 59.195 55.000 0.00 0.00 0.00 3.66
2685 4136 1.610624 GCCTCCTTTCGTCAACCATGA 60.611 52.381 0.00 0.00 0.00 3.07
2686 4137 2.941415 GCCTCCTTTCGTCAACCATGAT 60.941 50.000 0.00 0.00 38.01 2.45
2687 4138 2.939103 CCTCCTTTCGTCAACCATGATC 59.061 50.000 0.00 0.00 38.01 2.92
2688 4139 2.939103 CTCCTTTCGTCAACCATGATCC 59.061 50.000 0.00 0.00 38.01 3.36
2689 4140 2.304470 TCCTTTCGTCAACCATGATCCA 59.696 45.455 0.00 0.00 38.01 3.41
2691 4142 2.849294 TTCGTCAACCATGATCCACA 57.151 45.000 0.00 0.00 38.01 4.17
2692 4143 2.849294 TCGTCAACCATGATCCACAA 57.151 45.000 0.00 0.00 38.01 3.33
2693 4144 2.698803 TCGTCAACCATGATCCACAAG 58.301 47.619 0.00 0.00 38.01 3.16
2694 4145 1.131126 CGTCAACCATGATCCACAAGC 59.869 52.381 0.00 0.00 38.01 4.01
2705 4158 8.166061 ACCATGATCCACAAGCACTTATTATAT 58.834 33.333 0.00 0.00 0.00 0.86
2706 4159 8.456471 CCATGATCCACAAGCACTTATTATATG 58.544 37.037 0.00 0.00 0.00 1.78
2714 4167 7.012704 CACAAGCACTTATTATATGGCTGTCTT 59.987 37.037 0.00 0.00 0.00 3.01
2732 4185 7.227512 GGCTGTCTTATAGCTTCATATGTTGTT 59.772 37.037 1.90 0.00 40.92 2.83
2733 4186 8.279103 GCTGTCTTATAGCTTCATATGTTGTTC 58.721 37.037 1.90 0.00 38.14 3.18
2739 4195 9.679661 TTATAGCTTCATATGTTGTTCTTTGGA 57.320 29.630 1.90 0.00 0.00 3.53
2747 4203 8.058235 TCATATGTTGTTCTTTGGATATTCCCA 58.942 33.333 1.90 0.00 35.03 4.37
2759 4215 4.889409 TGGATATTCCCAAAGAACAGATGC 59.111 41.667 0.00 0.00 37.29 3.91
2810 4266 6.097554 AGACTGAACCTGATCGATAATCAACT 59.902 38.462 0.00 0.00 43.78 3.16
2811 4267 6.045318 ACTGAACCTGATCGATAATCAACTG 58.955 40.000 0.00 0.00 43.78 3.16
2816 4272 5.360999 ACCTGATCGATAATCAACTGTCTCA 59.639 40.000 0.00 0.00 43.78 3.27
2818 4274 5.273944 TGATCGATAATCAACTGTCTCACG 58.726 41.667 0.00 0.00 41.49 4.35
2819 4275 3.435566 TCGATAATCAACTGTCTCACGC 58.564 45.455 0.00 0.00 0.00 5.34
2820 4276 3.128764 TCGATAATCAACTGTCTCACGCT 59.871 43.478 0.00 0.00 0.00 5.07
2849 4305 4.811557 CCATTTTGCGGTTTTCCTTAACAA 59.188 37.500 0.00 0.00 37.95 2.83
2853 4309 6.636562 TTTGCGGTTTTCCTTAACAATCTA 57.363 33.333 0.00 0.00 37.95 1.98
2854 4310 6.636562 TTGCGGTTTTCCTTAACAATCTAA 57.363 33.333 0.00 0.00 37.95 2.10
2856 4312 7.925043 TGCGGTTTTCCTTAACAATCTAATA 57.075 32.000 0.00 0.00 37.95 0.98
2887 4343 9.890629 TCTTATATGTATCCCTTGCATGTAATC 57.109 33.333 0.00 0.00 34.93 1.75
2891 4347 5.125356 TGTATCCCTTGCATGTAATCACAG 58.875 41.667 0.00 0.00 38.30 3.66
2917 4373 3.181408 ACTCCATCTGCCTCCTCTGATAT 60.181 47.826 0.00 0.00 0.00 1.63
2920 4376 3.055963 CCATCTGCCTCCTCTGATATGAC 60.056 52.174 0.00 0.00 0.00 3.06
2922 4378 3.854437 TCTGCCTCCTCTGATATGACAT 58.146 45.455 0.00 0.00 0.00 3.06
2923 4379 4.229639 TCTGCCTCCTCTGATATGACATT 58.770 43.478 0.00 0.00 0.00 2.71
2927 4384 4.316645 CCTCCTCTGATATGACATTGCAG 58.683 47.826 9.70 9.70 0.00 4.41
2931 4388 4.689812 CCTCTGATATGACATTGCAGTAGC 59.310 45.833 13.63 0.00 42.57 3.58
2948 4405 1.526917 GCGCCTGCCAAGGTATGAT 60.527 57.895 0.00 0.00 46.43 2.45
2951 4408 1.750778 CGCCTGCCAAGGTATGATTTT 59.249 47.619 0.00 0.00 46.43 1.82
2952 4409 2.166254 CGCCTGCCAAGGTATGATTTTT 59.834 45.455 0.00 0.00 46.43 1.94
2972 4429 2.943449 TTTTTCAACCGGGTTCACAC 57.057 45.000 10.04 0.00 0.00 3.82
2973 4430 1.104630 TTTTCAACCGGGTTCACACC 58.895 50.000 10.04 0.00 43.37 4.16
2982 4439 3.765968 GGTTCACACCCCTTTCCAT 57.234 52.632 0.00 0.00 37.03 3.41
2983 4440 2.009681 GGTTCACACCCCTTTCCATT 57.990 50.000 0.00 0.00 37.03 3.16
2984 4441 3.163616 GGTTCACACCCCTTTCCATTA 57.836 47.619 0.00 0.00 37.03 1.90
2985 4442 3.502356 GGTTCACACCCCTTTCCATTAA 58.498 45.455 0.00 0.00 37.03 1.40
2986 4443 4.093743 GGTTCACACCCCTTTCCATTAAT 58.906 43.478 0.00 0.00 37.03 1.40
2987 4444 4.530553 GGTTCACACCCCTTTCCATTAATT 59.469 41.667 0.00 0.00 37.03 1.40
2988 4445 5.012664 GGTTCACACCCCTTTCCATTAATTT 59.987 40.000 0.00 0.00 37.03 1.82
2989 4446 6.465178 GGTTCACACCCCTTTCCATTAATTTT 60.465 38.462 0.00 0.00 37.03 1.82
2990 4447 6.107901 TCACACCCCTTTCCATTAATTTTG 57.892 37.500 0.00 0.00 0.00 2.44
2991 4448 4.694982 CACACCCCTTTCCATTAATTTTGC 59.305 41.667 0.00 0.00 0.00 3.68
2992 4449 4.349342 ACACCCCTTTCCATTAATTTTGCA 59.651 37.500 0.00 0.00 0.00 4.08
2993 4450 5.163152 ACACCCCTTTCCATTAATTTTGCAA 60.163 36.000 0.00 0.00 0.00 4.08
2994 4451 5.945191 CACCCCTTTCCATTAATTTTGCAAT 59.055 36.000 0.00 0.00 0.00 3.56
2995 4452 6.093909 CACCCCTTTCCATTAATTTTGCAATC 59.906 38.462 0.00 0.00 0.00 2.67
2996 4453 6.179040 CCCCTTTCCATTAATTTTGCAATCA 58.821 36.000 0.00 0.00 0.00 2.57
2997 4454 6.658391 CCCCTTTCCATTAATTTTGCAATCAA 59.342 34.615 0.00 0.00 0.00 2.57
2998 4455 7.361971 CCCCTTTCCATTAATTTTGCAATCAAC 60.362 37.037 0.00 0.00 30.75 3.18
2999 4456 7.235777 CCTTTCCATTAATTTTGCAATCAACG 58.764 34.615 0.00 0.00 30.75 4.10
3000 4457 6.718454 TTCCATTAATTTTGCAATCAACGG 57.282 33.333 0.00 0.00 30.75 4.44
3001 4458 6.030548 TCCATTAATTTTGCAATCAACGGA 57.969 33.333 0.00 0.00 30.75 4.69
3002 4459 6.459066 TCCATTAATTTTGCAATCAACGGAA 58.541 32.000 0.00 0.00 30.75 4.30
3003 4460 6.931281 TCCATTAATTTTGCAATCAACGGAAA 59.069 30.769 0.00 0.00 30.75 3.13
3004 4461 7.605691 TCCATTAATTTTGCAATCAACGGAAAT 59.394 29.630 0.00 0.00 30.75 2.17
3005 4462 8.877779 CCATTAATTTTGCAATCAACGGAAATA 58.122 29.630 0.00 0.00 30.75 1.40
3006 4463 9.687717 CATTAATTTTGCAATCAACGGAAATAC 57.312 29.630 0.00 0.00 30.75 1.89
3007 4464 8.818141 TTAATTTTGCAATCAACGGAAATACA 57.182 26.923 0.00 0.00 30.75 2.29
3008 4465 7.903995 AATTTTGCAATCAACGGAAATACAT 57.096 28.000 0.00 0.00 30.75 2.29
3009 4466 6.942886 TTTTGCAATCAACGGAAATACATC 57.057 33.333 0.00 0.00 30.75 3.06
3010 4467 5.635417 TTGCAATCAACGGAAATACATCA 57.365 34.783 0.00 0.00 0.00 3.07
3011 4468 5.233957 TGCAATCAACGGAAATACATCAG 57.766 39.130 0.00 0.00 0.00 2.90
3012 4469 4.699735 TGCAATCAACGGAAATACATCAGT 59.300 37.500 0.00 0.00 0.00 3.41
3013 4470 5.163764 TGCAATCAACGGAAATACATCAGTC 60.164 40.000 0.00 0.00 0.00 3.51
3014 4471 5.065218 GCAATCAACGGAAATACATCAGTCT 59.935 40.000 0.00 0.00 0.00 3.24
3015 4472 6.481134 CAATCAACGGAAATACATCAGTCTG 58.519 40.000 0.00 0.00 0.00 3.51
3016 4473 5.147330 TCAACGGAAATACATCAGTCTGT 57.853 39.130 0.00 0.00 0.00 3.41
3017 4474 5.547465 TCAACGGAAATACATCAGTCTGTT 58.453 37.500 0.00 0.00 39.58 3.16
3018 4475 5.637810 TCAACGGAAATACATCAGTCTGTTC 59.362 40.000 0.00 0.00 37.46 3.18
3019 4476 5.407407 ACGGAAATACATCAGTCTGTTCT 57.593 39.130 0.00 0.00 0.00 3.01
3020 4477 5.171476 ACGGAAATACATCAGTCTGTTCTG 58.829 41.667 0.00 3.19 36.85 3.02
3021 4478 5.171476 CGGAAATACATCAGTCTGTTCTGT 58.829 41.667 0.00 5.41 36.85 3.41
3022 4479 5.639506 CGGAAATACATCAGTCTGTTCTGTT 59.360 40.000 0.00 0.00 36.85 3.16
3023 4480 6.147821 CGGAAATACATCAGTCTGTTCTGTTT 59.852 38.462 0.00 0.00 36.85 2.83
3024 4481 7.307989 CGGAAATACATCAGTCTGTTCTGTTTT 60.308 37.037 0.00 2.28 36.85 2.43
3025 4482 8.999431 GGAAATACATCAGTCTGTTCTGTTTTA 58.001 33.333 0.00 0.00 36.85 1.52
3031 4488 9.778741 ACATCAGTCTGTTCTGTTTTATAAAGA 57.221 29.630 0.00 0.00 36.85 2.52
3034 4491 9.140286 TCAGTCTGTTCTGTTTTATAAAGATCG 57.860 33.333 0.00 0.00 36.85 3.69
3035 4492 7.900352 CAGTCTGTTCTGTTTTATAAAGATCGC 59.100 37.037 0.00 0.00 0.00 4.58
3036 4493 7.602644 AGTCTGTTCTGTTTTATAAAGATCGCA 59.397 33.333 0.00 0.00 0.00 5.10
3037 4494 8.227791 GTCTGTTCTGTTTTATAAAGATCGCAA 58.772 33.333 0.00 0.00 0.00 4.85
3038 4495 8.779303 TCTGTTCTGTTTTATAAAGATCGCAAA 58.221 29.630 0.00 0.00 0.00 3.68
3039 4496 9.393249 CTGTTCTGTTTTATAAAGATCGCAAAA 57.607 29.630 0.00 0.00 0.00 2.44
3040 4497 9.906660 TGTTCTGTTTTATAAAGATCGCAAAAT 57.093 25.926 0.00 0.00 0.00 1.82
3043 4500 9.773328 TCTGTTTTATAAAGATCGCAAAATGAG 57.227 29.630 0.00 0.00 0.00 2.90
3044 4501 8.393395 TGTTTTATAAAGATCGCAAAATGAGC 57.607 30.769 0.00 0.00 0.00 4.26
3045 4502 8.026026 TGTTTTATAAAGATCGCAAAATGAGCA 58.974 29.630 0.00 0.00 0.00 4.26
3046 4503 9.023967 GTTTTATAAAGATCGCAAAATGAGCAT 57.976 29.630 0.00 0.00 0.00 3.79
3047 4504 8.786937 TTTATAAAGATCGCAAAATGAGCATC 57.213 30.769 0.00 0.00 0.00 3.91
3060 4517 2.826428 TGAGCATCAAGCCGAATAGAC 58.174 47.619 0.00 0.00 45.97 2.59
3061 4518 2.483714 TGAGCATCAAGCCGAATAGACC 60.484 50.000 0.00 0.00 45.97 3.85
3062 4519 1.953559 GCATCAAGCCGAATAGACCA 58.046 50.000 0.00 0.00 37.23 4.02
3063 4520 2.288666 GCATCAAGCCGAATAGACCAA 58.711 47.619 0.00 0.00 37.23 3.67
3064 4521 2.032178 GCATCAAGCCGAATAGACCAAC 59.968 50.000 0.00 0.00 37.23 3.77
3065 4522 3.535561 CATCAAGCCGAATAGACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
3066 4523 4.693283 CATCAAGCCGAATAGACCAACTA 58.307 43.478 0.00 0.00 35.42 2.24
3067 4524 4.119442 TCAAGCCGAATAGACCAACTAC 57.881 45.455 0.00 0.00 33.62 2.73
3068 4525 3.118884 TCAAGCCGAATAGACCAACTACC 60.119 47.826 0.00 0.00 33.62 3.18
3069 4526 2.463752 AGCCGAATAGACCAACTACCA 58.536 47.619 0.00 0.00 33.62 3.25
3070 4527 2.835764 AGCCGAATAGACCAACTACCAA 59.164 45.455 0.00 0.00 33.62 3.67
3071 4528 3.118738 AGCCGAATAGACCAACTACCAAG 60.119 47.826 0.00 0.00 33.62 3.61
3072 4529 3.195661 CCGAATAGACCAACTACCAAGC 58.804 50.000 0.00 0.00 33.62 4.01
3073 4530 3.369052 CCGAATAGACCAACTACCAAGCA 60.369 47.826 0.00 0.00 33.62 3.91
3074 4531 4.250464 CGAATAGACCAACTACCAAGCAA 58.750 43.478 0.00 0.00 33.62 3.91
3075 4532 4.693566 CGAATAGACCAACTACCAAGCAAA 59.306 41.667 0.00 0.00 33.62 3.68
3076 4533 5.163854 CGAATAGACCAACTACCAAGCAAAG 60.164 44.000 0.00 0.00 33.62 2.77
3077 4534 2.863809 AGACCAACTACCAAGCAAAGG 58.136 47.619 0.00 0.00 0.00 3.11
3078 4535 1.886542 GACCAACTACCAAGCAAAGGG 59.113 52.381 0.00 0.00 0.00 3.95
3079 4536 1.256812 CCAACTACCAAGCAAAGGGG 58.743 55.000 0.00 0.00 0.00 4.79
3080 4537 1.203001 CCAACTACCAAGCAAAGGGGA 60.203 52.381 0.00 0.00 0.00 4.81
3081 4538 1.886542 CAACTACCAAGCAAAGGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
3083 4540 1.073923 ACTACCAAGCAAAGGGGACTG 59.926 52.381 0.00 0.00 42.68 3.51
3084 4541 1.351017 CTACCAAGCAAAGGGGACTGA 59.649 52.381 0.00 0.00 42.68 3.41
3085 4542 0.555769 ACCAAGCAAAGGGGACTGAA 59.444 50.000 0.00 0.00 42.68 3.02
3086 4543 1.063266 ACCAAGCAAAGGGGACTGAAA 60.063 47.619 0.00 0.00 42.68 2.69
3087 4544 1.615392 CCAAGCAAAGGGGACTGAAAG 59.385 52.381 0.00 0.00 42.68 2.62
3088 4545 1.615392 CAAGCAAAGGGGACTGAAAGG 59.385 52.381 0.00 0.00 42.68 3.11
3089 4546 0.113190 AGCAAAGGGGACTGAAAGGG 59.887 55.000 0.00 0.00 42.68 3.95
3090 4547 0.900182 GCAAAGGGGACTGAAAGGGG 60.900 60.000 0.00 0.00 42.68 4.79
3091 4548 0.777446 CAAAGGGGACTGAAAGGGGA 59.223 55.000 0.00 0.00 42.68 4.81
3092 4549 1.076438 AAAGGGGACTGAAAGGGGAG 58.924 55.000 0.00 0.00 42.68 4.30
3093 4550 0.196118 AAGGGGACTGAAAGGGGAGA 59.804 55.000 0.00 0.00 42.68 3.71
3094 4551 0.252927 AGGGGACTGAAAGGGGAGAG 60.253 60.000 0.00 0.00 41.13 3.20
3095 4552 1.604915 GGGACTGAAAGGGGAGAGC 59.395 63.158 0.00 0.00 39.30 4.09
3096 4553 1.219393 GGACTGAAAGGGGAGAGCG 59.781 63.158 0.00 0.00 39.30 5.03
3097 4554 1.258445 GGACTGAAAGGGGAGAGCGA 61.258 60.000 0.00 0.00 39.30 4.93
3098 4555 0.174617 GACTGAAAGGGGAGAGCGAG 59.825 60.000 0.00 0.00 39.30 5.03
3099 4556 0.543174 ACTGAAAGGGGAGAGCGAGT 60.543 55.000 0.00 0.00 39.30 4.18
3100 4557 0.610687 CTGAAAGGGGAGAGCGAGTT 59.389 55.000 0.00 0.00 0.00 3.01
3101 4558 0.321671 TGAAAGGGGAGAGCGAGTTG 59.678 55.000 0.00 0.00 0.00 3.16
3102 4559 0.391793 GAAAGGGGAGAGCGAGTTGG 60.392 60.000 0.00 0.00 0.00 3.77
3103 4560 1.128188 AAAGGGGAGAGCGAGTTGGT 61.128 55.000 0.00 0.00 0.00 3.67
3104 4561 1.831652 AAGGGGAGAGCGAGTTGGTG 61.832 60.000 0.00 0.00 0.00 4.17
3105 4562 2.435059 GGGAGAGCGAGTTGGTGC 60.435 66.667 0.00 0.00 0.00 5.01
3106 4563 2.343758 GGAGAGCGAGTTGGTGCA 59.656 61.111 0.00 0.00 0.00 4.57
3107 4564 1.078848 GGAGAGCGAGTTGGTGCAT 60.079 57.895 0.00 0.00 0.00 3.96
3108 4565 1.086634 GGAGAGCGAGTTGGTGCATC 61.087 60.000 0.00 0.00 0.00 3.91
3109 4566 1.416813 GAGAGCGAGTTGGTGCATCG 61.417 60.000 2.33 2.33 39.40 3.84
3112 4569 2.741985 CGAGTTGGTGCATCGCCA 60.742 61.111 0.00 0.00 42.73 5.69
3113 4570 2.743752 CGAGTTGGTGCATCGCCAG 61.744 63.158 0.00 0.00 45.18 4.85
3114 4571 2.360350 AGTTGGTGCATCGCCAGG 60.360 61.111 0.00 0.00 45.18 4.45
3115 4572 2.359850 GTTGGTGCATCGCCAGGA 60.360 61.111 0.00 0.00 45.18 3.86
3116 4573 1.971167 GTTGGTGCATCGCCAGGAA 60.971 57.895 0.00 0.00 45.18 3.36
3117 4574 1.228398 TTGGTGCATCGCCAGGAAA 60.228 52.632 0.00 0.00 45.18 3.13
3118 4575 1.523154 TTGGTGCATCGCCAGGAAAC 61.523 55.000 0.00 0.00 45.18 2.78
3119 4576 2.700773 GGTGCATCGCCAGGAAACC 61.701 63.158 0.00 0.00 33.65 3.27
3120 4577 2.361104 TGCATCGCCAGGAAACCC 60.361 61.111 0.00 0.00 0.00 4.11
3121 4578 2.361104 GCATCGCCAGGAAACCCA 60.361 61.111 0.00 0.00 0.00 4.51
3122 4579 2.700773 GCATCGCCAGGAAACCCAC 61.701 63.158 0.00 0.00 0.00 4.61
3123 4580 1.002134 CATCGCCAGGAAACCCACT 60.002 57.895 0.00 0.00 0.00 4.00
3124 4581 1.002134 ATCGCCAGGAAACCCACTG 60.002 57.895 0.00 0.00 34.54 3.66
3125 4582 3.365265 CGCCAGGAAACCCACTGC 61.365 66.667 0.00 0.00 33.43 4.40
3126 4583 2.203480 GCCAGGAAACCCACTGCA 60.203 61.111 0.00 0.00 33.43 4.41
3127 4584 1.607467 GCCAGGAAACCCACTGCAT 60.607 57.895 0.00 0.00 33.43 3.96
3128 4585 1.880819 GCCAGGAAACCCACTGCATG 61.881 60.000 0.00 0.00 33.43 4.06
3129 4586 0.251297 CCAGGAAACCCACTGCATGA 60.251 55.000 0.00 0.00 33.43 3.07
3130 4587 1.617804 CCAGGAAACCCACTGCATGAT 60.618 52.381 0.00 0.00 33.43 2.45
3131 4588 2.357050 CCAGGAAACCCACTGCATGATA 60.357 50.000 0.00 0.00 33.43 2.15
3132 4589 2.947652 CAGGAAACCCACTGCATGATAG 59.052 50.000 0.00 0.00 0.00 2.08
3133 4590 1.678101 GGAAACCCACTGCATGATAGC 59.322 52.381 0.00 0.00 0.00 2.97
3134 4591 1.678101 GAAACCCACTGCATGATAGCC 59.322 52.381 0.00 0.00 0.00 3.93
3135 4592 0.106519 AACCCACTGCATGATAGCCC 60.107 55.000 0.00 0.00 0.00 5.19
3136 4593 0.990282 ACCCACTGCATGATAGCCCT 60.990 55.000 0.00 0.00 0.00 5.19
3137 4594 0.536687 CCCACTGCATGATAGCCCTG 60.537 60.000 0.00 0.00 0.00 4.45
3138 4595 0.182061 CCACTGCATGATAGCCCTGT 59.818 55.000 0.00 0.00 0.00 4.00
3139 4596 1.417517 CCACTGCATGATAGCCCTGTA 59.582 52.381 0.00 0.00 0.00 2.74
3140 4597 2.158769 CCACTGCATGATAGCCCTGTAA 60.159 50.000 0.00 0.00 0.00 2.41
3141 4598 2.874701 CACTGCATGATAGCCCTGTAAC 59.125 50.000 0.00 0.00 0.00 2.50
3142 4599 2.138320 CTGCATGATAGCCCTGTAACG 58.862 52.381 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.512156 GCGCCCGTCCTTTTCTTCAA 61.512 55.000 0.00 0.00 0.00 2.69
1 2 1.964373 GCGCCCGTCCTTTTCTTCA 60.964 57.895 0.00 0.00 0.00 3.02
2 3 2.868196 GCGCCCGTCCTTTTCTTC 59.132 61.111 0.00 0.00 0.00 2.87
3 4 3.047877 CGCGCCCGTCCTTTTCTT 61.048 61.111 0.00 0.00 0.00 2.52
21 22 4.834892 ATTGATGGCGCGCGTTGC 62.835 61.111 32.35 14.96 41.47 4.17
22 23 2.651367 ATCATTGATGGCGCGCGTTG 62.651 55.000 32.35 15.09 0.00 4.10
23 24 2.378945 GATCATTGATGGCGCGCGTT 62.379 55.000 32.35 15.25 0.00 4.84
24 25 2.885676 GATCATTGATGGCGCGCGT 61.886 57.895 32.35 16.88 0.00 6.01
25 26 1.284297 TAGATCATTGATGGCGCGCG 61.284 55.000 28.44 28.44 0.00 6.86
26 27 0.441533 CTAGATCATTGATGGCGCGC 59.558 55.000 25.94 25.94 0.00 6.86
27 28 1.788258 ACTAGATCATTGATGGCGCG 58.212 50.000 0.00 0.00 0.00 6.86
28 29 4.498241 TCATACTAGATCATTGATGGCGC 58.502 43.478 3.32 0.00 0.00 6.53
29 30 6.091849 CCTTTCATACTAGATCATTGATGGCG 59.908 42.308 3.32 0.00 0.00 5.69
30 31 7.164122 TCCTTTCATACTAGATCATTGATGGC 58.836 38.462 3.32 0.00 0.00 4.40
31 32 9.565090 TTTCCTTTCATACTAGATCATTGATGG 57.435 33.333 3.32 0.00 0.00 3.51
37 38 9.401058 CCAACTTTTCCTTTCATACTAGATCAT 57.599 33.333 0.00 0.00 0.00 2.45
38 39 7.336931 GCCAACTTTTCCTTTCATACTAGATCA 59.663 37.037 0.00 0.00 0.00 2.92
39 40 7.336931 TGCCAACTTTTCCTTTCATACTAGATC 59.663 37.037 0.00 0.00 0.00 2.75
40 41 7.175104 TGCCAACTTTTCCTTTCATACTAGAT 58.825 34.615 0.00 0.00 0.00 1.98
41 42 6.539173 TGCCAACTTTTCCTTTCATACTAGA 58.461 36.000 0.00 0.00 0.00 2.43
42 43 6.655003 TCTGCCAACTTTTCCTTTCATACTAG 59.345 38.462 0.00 0.00 0.00 2.57
43 44 6.539173 TCTGCCAACTTTTCCTTTCATACTA 58.461 36.000 0.00 0.00 0.00 1.82
44 45 5.385198 TCTGCCAACTTTTCCTTTCATACT 58.615 37.500 0.00 0.00 0.00 2.12
45 46 5.705609 TCTGCCAACTTTTCCTTTCATAC 57.294 39.130 0.00 0.00 0.00 2.39
77 78 2.673341 ACGTCGCTGAGCAGAGGA 60.673 61.111 19.72 1.47 0.00 3.71
83 84 2.125912 ATGTCCACGTCGCTGAGC 60.126 61.111 0.00 0.00 0.00 4.26
84 85 1.807165 CCATGTCCACGTCGCTGAG 60.807 63.158 0.00 0.00 0.00 3.35
88 89 2.813179 GCATCCATGTCCACGTCGC 61.813 63.158 0.00 0.00 0.00 5.19
157 158 3.275999 AGAAGAAGGCGTAGAGAGAGTC 58.724 50.000 0.00 0.00 0.00 3.36
260 266 1.393603 TGGACTAGCGGAGATGACAG 58.606 55.000 0.00 0.00 0.00 3.51
310 329 0.385751 GCTTCATCTCGTCCGGATCA 59.614 55.000 7.81 0.00 0.00 2.92
433 474 1.519455 GCTGAAGTAGCGGCGATGT 60.519 57.895 12.98 0.00 43.63 3.06
442 483 4.543590 TGGAGAAGAAAGGCTGAAGTAG 57.456 45.455 0.00 0.00 0.00 2.57
508 549 1.526575 ATGCAGCAAAGGAACGTGGG 61.527 55.000 0.00 0.00 0.00 4.61
510 551 1.464023 CGTATGCAGCAAAGGAACGTG 60.464 52.381 0.00 0.00 0.00 4.49
512 553 0.521242 GCGTATGCAGCAAAGGAACG 60.521 55.000 0.00 6.23 42.15 3.95
556 597 1.004277 AGGCGCCAAATTAGTTGAGGA 59.996 47.619 31.54 0.00 39.87 3.71
595 641 7.781693 AGATCAATTTAATGGAGTGGTGCTTAT 59.218 33.333 0.00 0.00 0.00 1.73
640 687 5.798934 GTGCAAATCAGATGAGAACATTCAC 59.201 40.000 0.00 0.00 36.82 3.18
678 727 1.995066 TGGGGACATGCTCCGACAT 60.995 57.895 0.00 0.00 41.55 3.06
751 819 1.207089 TGATCTGAAACTGGCGGTAGG 59.793 52.381 0.00 0.00 0.00 3.18
761 829 9.173939 CAAACTACTGAAATTGTGATCTGAAAC 57.826 33.333 0.00 0.00 0.00 2.78
788 867 3.071023 CACCACGGTTCCCATACATAGAT 59.929 47.826 0.00 0.00 0.00 1.98
895 978 7.136119 GTCTCCTTCTCGAAAGATGTATACAG 58.864 42.308 11.91 0.00 40.84 2.74
909 992 9.400638 GTATTCAGTATTATTGTCTCCTTCTCG 57.599 37.037 0.00 0.00 0.00 4.04
948 1043 2.095919 GTCGTGTATCAACCTGCAAACC 60.096 50.000 0.00 0.00 0.00 3.27
966 1061 0.456312 GGTAGTGCGTGAAGAGGTCG 60.456 60.000 0.00 0.00 0.00 4.79
967 1062 0.108756 GGGTAGTGCGTGAAGAGGTC 60.109 60.000 0.00 0.00 0.00 3.85
987 1092 1.274728 AGCTGCATTCTCTCAACGACT 59.725 47.619 1.02 0.00 0.00 4.18
989 1094 1.404717 GGAGCTGCATTCTCTCAACGA 60.405 52.381 13.64 0.00 0.00 3.85
992 1097 0.107993 CCGGAGCTGCATTCTCTCAA 60.108 55.000 5.91 0.00 0.00 3.02
1062 1167 8.732746 TCTTATTATTTTCAGTAAGGCTGTCC 57.267 34.615 0.00 0.00 45.23 4.02
1391 1508 1.091771 CGGCCGAACAGCATTCATCT 61.092 55.000 24.07 0.00 0.00 2.90
1396 1513 3.434319 CAGCGGCCGAACAGCATT 61.434 61.111 33.48 0.00 42.62 3.56
1490 1607 5.819991 AGTTGATGTTGTGGTGGATAATCT 58.180 37.500 0.00 0.00 0.00 2.40
1823 2833 0.251354 CTCCACTAGCAGCACACCAT 59.749 55.000 0.00 0.00 0.00 3.55
1836 2846 3.374402 CCCGTGACGAGCTCCACT 61.374 66.667 17.54 0.00 0.00 4.00
1837 2847 4.436998 CCCCGTGACGAGCTCCAC 62.437 72.222 6.54 10.47 0.00 4.02
1868 3014 0.760567 ATGACCATCCGCTCCAGCTA 60.761 55.000 0.00 0.00 39.32 3.32
2400 3765 7.413219 CGGCAGAAGGAACGTAAATATAAAACA 60.413 37.037 0.00 0.00 0.00 2.83
2425 3843 1.005748 TTCAGTGCTGCCTCAGTCG 60.006 57.895 0.00 0.00 33.43 4.18
2432 3850 0.320421 TTCGGTAGTTCAGTGCTGCC 60.320 55.000 0.00 0.00 35.73 4.85
2473 3891 6.151817 GGATTTTCTCCAAGCTAAACACAGAT 59.848 38.462 0.00 0.00 44.26 2.90
2494 3912 3.634397 AGTGATGACCGTTGATGGATT 57.366 42.857 0.00 0.00 0.00 3.01
2497 3915 4.191544 ACAATAGTGATGACCGTTGATGG 58.808 43.478 0.00 0.00 0.00 3.51
2501 3919 6.721571 AACTAACAATAGTGATGACCGTTG 57.278 37.500 0.00 0.00 41.57 4.10
2505 3923 6.126854 ACCCCTAACTAACAATAGTGATGACC 60.127 42.308 0.00 0.00 41.57 4.02
2600 4050 4.618227 GCAATATGGGTGTCAGGAACAAAC 60.618 45.833 0.00 0.00 40.31 2.93
2639 4089 1.148273 GCAACGGATATGGCAGGGA 59.852 57.895 0.00 0.00 0.00 4.20
2663 4114 0.400213 TGGTTGACGAAAGGAGGCAT 59.600 50.000 0.00 0.00 0.00 4.40
2664 4115 0.400213 ATGGTTGACGAAAGGAGGCA 59.600 50.000 0.00 0.00 0.00 4.75
2665 4116 0.804989 CATGGTTGACGAAAGGAGGC 59.195 55.000 0.00 0.00 0.00 4.70
2667 4118 2.939103 GGATCATGGTTGACGAAAGGAG 59.061 50.000 0.00 0.00 33.85 3.69
2670 4121 3.073678 TGTGGATCATGGTTGACGAAAG 58.926 45.455 0.00 0.00 33.85 2.62
2672 4123 2.849294 TGTGGATCATGGTTGACGAA 57.151 45.000 0.00 0.00 33.85 3.85
2673 4124 2.698803 CTTGTGGATCATGGTTGACGA 58.301 47.619 0.00 0.00 33.85 4.20
2674 4125 1.131126 GCTTGTGGATCATGGTTGACG 59.869 52.381 0.00 0.00 33.85 4.35
2675 4126 2.095059 GTGCTTGTGGATCATGGTTGAC 60.095 50.000 0.00 0.00 33.85 3.18
2676 4127 2.161855 GTGCTTGTGGATCATGGTTGA 58.838 47.619 0.00 0.00 36.00 3.18
2677 4128 2.165167 AGTGCTTGTGGATCATGGTTG 58.835 47.619 0.00 0.00 0.00 3.77
2678 4129 2.592102 AGTGCTTGTGGATCATGGTT 57.408 45.000 0.00 0.00 0.00 3.67
2679 4130 2.592102 AAGTGCTTGTGGATCATGGT 57.408 45.000 0.00 0.00 0.00 3.55
2680 4131 6.889301 ATAATAAGTGCTTGTGGATCATGG 57.111 37.500 0.00 0.00 0.00 3.66
2681 4132 8.456471 CCATATAATAAGTGCTTGTGGATCATG 58.544 37.037 0.00 0.00 0.00 3.07
2683 4134 6.430925 GCCATATAATAAGTGCTTGTGGATCA 59.569 38.462 0.00 0.00 0.00 2.92
2684 4135 6.656693 AGCCATATAATAAGTGCTTGTGGATC 59.343 38.462 0.00 0.00 0.00 3.36
2685 4136 6.432162 CAGCCATATAATAAGTGCTTGTGGAT 59.568 38.462 0.00 0.00 0.00 3.41
2686 4137 5.764686 CAGCCATATAATAAGTGCTTGTGGA 59.235 40.000 0.00 0.00 0.00 4.02
2687 4138 5.532406 ACAGCCATATAATAAGTGCTTGTGG 59.468 40.000 0.00 0.00 0.00 4.17
2688 4139 6.484643 AGACAGCCATATAATAAGTGCTTGTG 59.515 38.462 0.00 0.00 0.00 3.33
2689 4140 6.595682 AGACAGCCATATAATAAGTGCTTGT 58.404 36.000 0.00 0.00 0.00 3.16
2693 4144 8.821894 GCTATAAGACAGCCATATAATAAGTGC 58.178 37.037 0.00 0.00 32.68 4.40
2705 4158 6.425210 ACATATGAAGCTATAAGACAGCCA 57.575 37.500 10.38 0.00 39.99 4.75
2706 4159 6.708054 ACAACATATGAAGCTATAAGACAGCC 59.292 38.462 10.38 0.00 39.99 4.85
2714 4167 9.851686 ATCCAAAGAACAACATATGAAGCTATA 57.148 29.630 10.38 0.00 0.00 1.31
2739 4195 5.263599 TGTGCATCTGTTCTTTGGGAATAT 58.736 37.500 0.00 0.00 36.24 1.28
2747 4203 3.887716 AGCTTTCTGTGCATCTGTTCTTT 59.112 39.130 0.00 0.00 0.00 2.52
2750 4206 3.911661 AAGCTTTCTGTGCATCTGTTC 57.088 42.857 0.00 0.00 0.00 3.18
2783 4239 5.594317 TGATTATCGATCAGGTTCAGTCTGA 59.406 40.000 0.00 0.00 44.19 3.27
2801 4257 4.400884 AGAGAGCGTGAGACAGTTGATTAT 59.599 41.667 0.00 0.00 0.00 1.28
2818 4274 1.138247 CCGCAAAATGGCAGAGAGC 59.862 57.895 0.00 0.00 44.65 4.09
2819 4275 0.883833 AACCGCAAAATGGCAGAGAG 59.116 50.000 0.00 0.00 0.00 3.20
2820 4276 1.327303 AAACCGCAAAATGGCAGAGA 58.673 45.000 0.00 0.00 0.00 3.10
2861 4317 9.890629 GATTACATGCAAGGGATACATATAAGA 57.109 33.333 0.00 0.00 39.74 2.10
2862 4318 9.671279 TGATTACATGCAAGGGATACATATAAG 57.329 33.333 0.00 0.00 39.74 1.73
2863 4319 9.448438 GTGATTACATGCAAGGGATACATATAA 57.552 33.333 0.00 0.00 39.74 0.98
2864 4320 8.601546 TGTGATTACATGCAAGGGATACATATA 58.398 33.333 0.00 0.00 39.74 0.86
2867 4323 5.693961 TGTGATTACATGCAAGGGATACAT 58.306 37.500 0.00 0.00 39.74 2.29
2868 4324 5.104569 TCTGTGATTACATGCAAGGGATACA 60.105 40.000 0.00 0.00 35.97 2.29
2869 4325 5.237344 GTCTGTGATTACATGCAAGGGATAC 59.763 44.000 0.00 0.00 35.97 2.24
2870 4326 5.368145 GTCTGTGATTACATGCAAGGGATA 58.632 41.667 0.00 0.00 35.97 2.59
2871 4327 4.202441 GTCTGTGATTACATGCAAGGGAT 58.798 43.478 0.00 0.00 35.97 3.85
2872 4328 3.609853 GTCTGTGATTACATGCAAGGGA 58.390 45.455 0.00 0.00 35.97 4.20
2873 4329 2.684881 GGTCTGTGATTACATGCAAGGG 59.315 50.000 0.00 0.00 35.97 3.95
2874 4330 3.127548 GTGGTCTGTGATTACATGCAAGG 59.872 47.826 0.00 0.00 35.97 3.61
2887 4343 0.392193 GGCAGATGGAGTGGTCTGTG 60.392 60.000 4.53 0.00 42.91 3.66
2891 4347 0.980231 AGGAGGCAGATGGAGTGGTC 60.980 60.000 0.00 0.00 0.00 4.02
2917 4373 1.020861 CAGGCGCTACTGCAATGTCA 61.021 55.000 7.64 0.00 39.64 3.58
2927 4384 1.146263 ATACCTTGGCAGGCGCTAC 59.854 57.895 7.64 0.00 45.56 3.58
2931 4388 1.392589 AAATCATACCTTGGCAGGCG 58.607 50.000 3.31 0.00 45.56 5.52
2953 4410 1.477295 GGTGTGAACCCGGTTGAAAAA 59.523 47.619 7.78 0.00 0.00 1.94
2954 4411 1.104630 GGTGTGAACCCGGTTGAAAA 58.895 50.000 7.78 0.00 0.00 2.29
2955 4412 0.752376 GGGTGTGAACCCGGTTGAAA 60.752 55.000 7.78 0.00 40.59 2.69
2956 4413 1.152922 GGGTGTGAACCCGGTTGAA 60.153 57.895 7.78 0.00 40.59 2.69
2957 4414 2.511900 GGGTGTGAACCCGGTTGA 59.488 61.111 7.78 0.00 40.59 3.18
2964 4421 2.009681 AATGGAAAGGGGTGTGAACC 57.990 50.000 0.00 0.00 0.00 3.62
2965 4422 5.738619 AATTAATGGAAAGGGGTGTGAAC 57.261 39.130 0.00 0.00 0.00 3.18
2966 4423 6.529220 CAAAATTAATGGAAAGGGGTGTGAA 58.471 36.000 0.00 0.00 0.00 3.18
2967 4424 5.512232 GCAAAATTAATGGAAAGGGGTGTGA 60.512 40.000 0.00 0.00 0.00 3.58
2968 4425 4.694982 GCAAAATTAATGGAAAGGGGTGTG 59.305 41.667 0.00 0.00 0.00 3.82
2969 4426 4.349342 TGCAAAATTAATGGAAAGGGGTGT 59.651 37.500 0.00 0.00 0.00 4.16
2970 4427 4.904241 TGCAAAATTAATGGAAAGGGGTG 58.096 39.130 0.00 0.00 0.00 4.61
2971 4428 5.574970 TTGCAAAATTAATGGAAAGGGGT 57.425 34.783 0.00 0.00 0.00 4.95
2972 4429 6.179040 TGATTGCAAAATTAATGGAAAGGGG 58.821 36.000 1.71 0.00 31.75 4.79
2973 4430 7.529158 GTTGATTGCAAAATTAATGGAAAGGG 58.471 34.615 1.71 0.00 35.42 3.95
2974 4431 7.235777 CGTTGATTGCAAAATTAATGGAAAGG 58.764 34.615 1.71 0.00 35.42 3.11
2975 4432 7.117523 TCCGTTGATTGCAAAATTAATGGAAAG 59.882 33.333 18.78 3.09 39.43 2.62
2976 4433 6.931281 TCCGTTGATTGCAAAATTAATGGAAA 59.069 30.769 18.78 5.81 39.43 3.13
2977 4434 6.459066 TCCGTTGATTGCAAAATTAATGGAA 58.541 32.000 18.78 1.52 39.43 3.53
2978 4435 6.030548 TCCGTTGATTGCAAAATTAATGGA 57.969 33.333 17.86 17.86 39.82 3.41
2979 4436 6.718454 TTCCGTTGATTGCAAAATTAATGG 57.282 33.333 1.71 11.07 36.62 3.16
2980 4437 9.687717 GTATTTCCGTTGATTGCAAAATTAATG 57.312 29.630 1.71 2.20 35.42 1.90
2981 4438 9.429359 TGTATTTCCGTTGATTGCAAAATTAAT 57.571 25.926 1.71 0.00 35.42 1.40
2982 4439 8.818141 TGTATTTCCGTTGATTGCAAAATTAA 57.182 26.923 1.71 0.00 35.42 1.40
2983 4440 8.994429 ATGTATTTCCGTTGATTGCAAAATTA 57.006 26.923 1.71 0.00 35.42 1.40
2984 4441 7.601886 TGATGTATTTCCGTTGATTGCAAAATT 59.398 29.630 1.71 0.00 35.42 1.82
2985 4442 7.095910 TGATGTATTTCCGTTGATTGCAAAAT 58.904 30.769 1.71 0.00 35.42 1.82
2986 4443 6.450545 TGATGTATTTCCGTTGATTGCAAAA 58.549 32.000 1.71 0.00 35.42 2.44
2987 4444 6.018589 TGATGTATTTCCGTTGATTGCAAA 57.981 33.333 1.71 0.00 35.42 3.68
2988 4445 5.182950 ACTGATGTATTTCCGTTGATTGCAA 59.817 36.000 0.00 0.00 0.00 4.08
2989 4446 4.699735 ACTGATGTATTTCCGTTGATTGCA 59.300 37.500 0.00 0.00 0.00 4.08
2990 4447 5.065218 AGACTGATGTATTTCCGTTGATTGC 59.935 40.000 0.00 0.00 0.00 3.56
2991 4448 6.092670 ACAGACTGATGTATTTCCGTTGATTG 59.907 38.462 10.08 0.00 0.00 2.67
2992 4449 6.173339 ACAGACTGATGTATTTCCGTTGATT 58.827 36.000 10.08 0.00 0.00 2.57
2993 4450 5.734720 ACAGACTGATGTATTTCCGTTGAT 58.265 37.500 10.08 0.00 0.00 2.57
2994 4451 5.147330 ACAGACTGATGTATTTCCGTTGA 57.853 39.130 10.08 0.00 0.00 3.18
2995 4452 5.639506 AGAACAGACTGATGTATTTCCGTTG 59.360 40.000 10.08 0.00 31.70 4.10
2996 4453 5.639506 CAGAACAGACTGATGTATTTCCGTT 59.360 40.000 10.08 0.00 39.94 4.44
2997 4454 5.171476 CAGAACAGACTGATGTATTTCCGT 58.829 41.667 10.08 0.00 39.94 4.69
2998 4455 5.171476 ACAGAACAGACTGATGTATTTCCG 58.829 41.667 10.08 0.00 40.63 4.30
2999 4456 7.440523 AAACAGAACAGACTGATGTATTTCC 57.559 36.000 10.08 0.00 40.63 3.13
3005 4462 9.778741 TCTTTATAAAACAGAACAGACTGATGT 57.221 29.630 10.08 8.06 40.63 3.06
3008 4465 9.140286 CGATCTTTATAAAACAGAACAGACTGA 57.860 33.333 10.08 0.00 40.63 3.41
3009 4466 7.900352 GCGATCTTTATAAAACAGAACAGACTG 59.100 37.037 0.00 0.00 42.78 3.51
3010 4467 7.602644 TGCGATCTTTATAAAACAGAACAGACT 59.397 33.333 0.00 0.00 0.00 3.24
3011 4468 7.739295 TGCGATCTTTATAAAACAGAACAGAC 58.261 34.615 0.00 0.00 0.00 3.51
3012 4469 7.899178 TGCGATCTTTATAAAACAGAACAGA 57.101 32.000 0.00 0.00 0.00 3.41
3013 4470 8.948853 TTTGCGATCTTTATAAAACAGAACAG 57.051 30.769 0.00 0.00 0.00 3.16
3014 4471 9.906660 ATTTTGCGATCTTTATAAAACAGAACA 57.093 25.926 0.00 0.00 0.00 3.18
3017 4474 9.773328 CTCATTTTGCGATCTTTATAAAACAGA 57.227 29.630 0.00 0.00 0.00 3.41
3018 4475 8.526681 GCTCATTTTGCGATCTTTATAAAACAG 58.473 33.333 0.00 0.00 0.00 3.16
3019 4476 8.026026 TGCTCATTTTGCGATCTTTATAAAACA 58.974 29.630 0.00 0.00 0.00 2.83
3020 4477 8.393395 TGCTCATTTTGCGATCTTTATAAAAC 57.607 30.769 0.00 0.00 0.00 2.43
3021 4478 9.236691 GATGCTCATTTTGCGATCTTTATAAAA 57.763 29.630 0.00 0.00 0.00 1.52
3022 4479 8.404765 TGATGCTCATTTTGCGATCTTTATAAA 58.595 29.630 0.00 0.00 0.00 1.40
3023 4480 7.929159 TGATGCTCATTTTGCGATCTTTATAA 58.071 30.769 0.00 0.00 0.00 0.98
3024 4481 7.495135 TGATGCTCATTTTGCGATCTTTATA 57.505 32.000 0.00 0.00 0.00 0.98
3025 4482 6.381481 TGATGCTCATTTTGCGATCTTTAT 57.619 33.333 0.00 0.00 0.00 1.40
3026 4483 5.816449 TGATGCTCATTTTGCGATCTTTA 57.184 34.783 0.00 0.00 0.00 1.85
3027 4484 4.707030 TGATGCTCATTTTGCGATCTTT 57.293 36.364 0.00 0.00 0.00 2.52
3028 4485 4.669318 CTTGATGCTCATTTTGCGATCTT 58.331 39.130 0.00 0.00 0.00 2.40
3029 4486 3.488721 GCTTGATGCTCATTTTGCGATCT 60.489 43.478 0.00 0.00 38.95 2.75
3030 4487 2.787680 GCTTGATGCTCATTTTGCGATC 59.212 45.455 0.00 0.00 38.95 3.69
3031 4488 2.480759 GGCTTGATGCTCATTTTGCGAT 60.481 45.455 0.00 0.00 42.39 4.58
3032 4489 1.135315 GGCTTGATGCTCATTTTGCGA 60.135 47.619 0.00 0.00 42.39 5.10
3033 4490 1.274596 GGCTTGATGCTCATTTTGCG 58.725 50.000 0.00 0.00 42.39 4.85
3034 4491 1.135315 TCGGCTTGATGCTCATTTTGC 60.135 47.619 0.00 0.00 42.39 3.68
3035 4492 2.925578 TCGGCTTGATGCTCATTTTG 57.074 45.000 0.00 0.00 42.39 2.44
3036 4493 4.883585 TCTATTCGGCTTGATGCTCATTTT 59.116 37.500 0.00 0.00 42.39 1.82
3037 4494 4.274459 GTCTATTCGGCTTGATGCTCATTT 59.726 41.667 0.00 0.00 42.39 2.32
3038 4495 3.812053 GTCTATTCGGCTTGATGCTCATT 59.188 43.478 0.00 0.00 42.39 2.57
3039 4496 3.397482 GTCTATTCGGCTTGATGCTCAT 58.603 45.455 0.00 0.00 42.39 2.90
3040 4497 2.483714 GGTCTATTCGGCTTGATGCTCA 60.484 50.000 0.00 0.00 42.39 4.26
3041 4498 2.139118 GGTCTATTCGGCTTGATGCTC 58.861 52.381 0.00 0.00 42.39 4.26
3042 4499 1.486310 TGGTCTATTCGGCTTGATGCT 59.514 47.619 0.00 0.00 42.39 3.79
3043 4500 1.953559 TGGTCTATTCGGCTTGATGC 58.046 50.000 0.00 0.00 41.94 3.91
3044 4501 3.535561 AGTTGGTCTATTCGGCTTGATG 58.464 45.455 0.00 0.00 0.00 3.07
3045 4502 3.914426 AGTTGGTCTATTCGGCTTGAT 57.086 42.857 0.00 0.00 0.00 2.57
3046 4503 3.118884 GGTAGTTGGTCTATTCGGCTTGA 60.119 47.826 0.00 0.00 0.00 3.02
3047 4504 3.195661 GGTAGTTGGTCTATTCGGCTTG 58.804 50.000 0.00 0.00 0.00 4.01
3048 4505 2.835764 TGGTAGTTGGTCTATTCGGCTT 59.164 45.455 0.00 0.00 0.00 4.35
3049 4506 2.463752 TGGTAGTTGGTCTATTCGGCT 58.536 47.619 0.00 0.00 0.00 5.52
3050 4507 2.973694 TGGTAGTTGGTCTATTCGGC 57.026 50.000 0.00 0.00 0.00 5.54
3051 4508 3.195661 GCTTGGTAGTTGGTCTATTCGG 58.804 50.000 0.00 0.00 0.00 4.30
3052 4509 3.857052 TGCTTGGTAGTTGGTCTATTCG 58.143 45.455 0.00 0.00 0.00 3.34
3053 4510 5.123979 CCTTTGCTTGGTAGTTGGTCTATTC 59.876 44.000 0.00 0.00 0.00 1.75
3054 4511 5.010282 CCTTTGCTTGGTAGTTGGTCTATT 58.990 41.667 0.00 0.00 0.00 1.73
3055 4512 4.567747 CCCTTTGCTTGGTAGTTGGTCTAT 60.568 45.833 0.00 0.00 0.00 1.98
3056 4513 3.244770 CCCTTTGCTTGGTAGTTGGTCTA 60.245 47.826 0.00 0.00 0.00 2.59
3057 4514 2.489073 CCCTTTGCTTGGTAGTTGGTCT 60.489 50.000 0.00 0.00 0.00 3.85
3058 4515 1.886542 CCCTTTGCTTGGTAGTTGGTC 59.113 52.381 0.00 0.00 0.00 4.02
3059 4516 1.480498 CCCCTTTGCTTGGTAGTTGGT 60.480 52.381 0.00 0.00 0.00 3.67
3060 4517 1.203001 TCCCCTTTGCTTGGTAGTTGG 60.203 52.381 0.00 0.00 0.00 3.77
3061 4518 1.886542 GTCCCCTTTGCTTGGTAGTTG 59.113 52.381 0.00 0.00 0.00 3.16
3062 4519 1.780919 AGTCCCCTTTGCTTGGTAGTT 59.219 47.619 0.00 0.00 0.00 2.24
3063 4520 1.073923 CAGTCCCCTTTGCTTGGTAGT 59.926 52.381 0.00 0.00 0.00 2.73
3064 4521 1.351017 TCAGTCCCCTTTGCTTGGTAG 59.649 52.381 0.00 0.00 0.00 3.18
3065 4522 1.440618 TCAGTCCCCTTTGCTTGGTA 58.559 50.000 0.00 0.00 0.00 3.25
3066 4523 0.555769 TTCAGTCCCCTTTGCTTGGT 59.444 50.000 0.00 0.00 0.00 3.67
3067 4524 1.615392 CTTTCAGTCCCCTTTGCTTGG 59.385 52.381 0.00 0.00 0.00 3.61
3068 4525 1.615392 CCTTTCAGTCCCCTTTGCTTG 59.385 52.381 0.00 0.00 0.00 4.01
3069 4526 1.481242 CCCTTTCAGTCCCCTTTGCTT 60.481 52.381 0.00 0.00 0.00 3.91
3070 4527 0.113190 CCCTTTCAGTCCCCTTTGCT 59.887 55.000 0.00 0.00 0.00 3.91
3071 4528 0.900182 CCCCTTTCAGTCCCCTTTGC 60.900 60.000 0.00 0.00 0.00 3.68
3072 4529 0.777446 TCCCCTTTCAGTCCCCTTTG 59.223 55.000 0.00 0.00 0.00 2.77
3073 4530 1.076438 CTCCCCTTTCAGTCCCCTTT 58.924 55.000 0.00 0.00 0.00 3.11
3074 4531 0.196118 TCTCCCCTTTCAGTCCCCTT 59.804 55.000 0.00 0.00 0.00 3.95
3075 4532 0.252927 CTCTCCCCTTTCAGTCCCCT 60.253 60.000 0.00 0.00 0.00 4.79
3076 4533 1.916206 GCTCTCCCCTTTCAGTCCCC 61.916 65.000 0.00 0.00 0.00 4.81
3077 4534 1.604915 GCTCTCCCCTTTCAGTCCC 59.395 63.158 0.00 0.00 0.00 4.46
3078 4535 1.219393 CGCTCTCCCCTTTCAGTCC 59.781 63.158 0.00 0.00 0.00 3.85
3079 4536 0.174617 CTCGCTCTCCCCTTTCAGTC 59.825 60.000 0.00 0.00 0.00 3.51
3080 4537 0.543174 ACTCGCTCTCCCCTTTCAGT 60.543 55.000 0.00 0.00 0.00 3.41
3081 4538 0.610687 AACTCGCTCTCCCCTTTCAG 59.389 55.000 0.00 0.00 0.00 3.02
3082 4539 0.321671 CAACTCGCTCTCCCCTTTCA 59.678 55.000 0.00 0.00 0.00 2.69
3083 4540 0.391793 CCAACTCGCTCTCCCCTTTC 60.392 60.000 0.00 0.00 0.00 2.62
3084 4541 1.128188 ACCAACTCGCTCTCCCCTTT 61.128 55.000 0.00 0.00 0.00 3.11
3085 4542 1.536662 ACCAACTCGCTCTCCCCTT 60.537 57.895 0.00 0.00 0.00 3.95
3086 4543 2.120718 ACCAACTCGCTCTCCCCT 59.879 61.111 0.00 0.00 0.00 4.79
3087 4544 2.266055 CACCAACTCGCTCTCCCC 59.734 66.667 0.00 0.00 0.00 4.81
3088 4545 2.435059 GCACCAACTCGCTCTCCC 60.435 66.667 0.00 0.00 0.00 4.30
3089 4546 1.078848 ATGCACCAACTCGCTCTCC 60.079 57.895 0.00 0.00 0.00 3.71
3090 4547 1.416813 CGATGCACCAACTCGCTCTC 61.417 60.000 0.00 0.00 0.00 3.20
3091 4548 1.446792 CGATGCACCAACTCGCTCT 60.447 57.895 0.00 0.00 0.00 4.09
3092 4549 3.084579 CGATGCACCAACTCGCTC 58.915 61.111 0.00 0.00 0.00 5.03
3095 4552 2.741985 TGGCGATGCACCAACTCG 60.742 61.111 2.33 2.33 33.12 4.18
3096 4553 2.401766 CCTGGCGATGCACCAACTC 61.402 63.158 0.00 0.00 36.56 3.01
3097 4554 2.360350 CCTGGCGATGCACCAACT 60.360 61.111 0.00 0.00 36.56 3.16
3098 4555 1.523154 TTTCCTGGCGATGCACCAAC 61.523 55.000 0.00 0.00 36.56 3.77
3099 4556 1.228398 TTTCCTGGCGATGCACCAA 60.228 52.632 0.00 0.00 36.56 3.67
3100 4557 1.971167 GTTTCCTGGCGATGCACCA 60.971 57.895 0.00 0.00 35.40 4.17
3101 4558 2.700773 GGTTTCCTGGCGATGCACC 61.701 63.158 0.00 0.00 0.00 5.01
3102 4559 2.700773 GGGTTTCCTGGCGATGCAC 61.701 63.158 0.00 0.00 0.00 4.57
3103 4560 2.361104 GGGTTTCCTGGCGATGCA 60.361 61.111 0.00 0.00 0.00 3.96
3104 4561 2.361104 TGGGTTTCCTGGCGATGC 60.361 61.111 0.00 0.00 0.00 3.91
3105 4562 1.002134 AGTGGGTTTCCTGGCGATG 60.002 57.895 0.00 0.00 0.00 3.84
3106 4563 1.002134 CAGTGGGTTTCCTGGCGAT 60.002 57.895 0.00 0.00 0.00 4.58
3107 4564 2.429930 CAGTGGGTTTCCTGGCGA 59.570 61.111 0.00 0.00 0.00 5.54
3108 4565 3.365265 GCAGTGGGTTTCCTGGCG 61.365 66.667 0.00 0.00 0.00 5.69
3109 4566 1.607467 ATGCAGTGGGTTTCCTGGC 60.607 57.895 0.00 0.00 0.00 4.85
3110 4567 0.251297 TCATGCAGTGGGTTTCCTGG 60.251 55.000 0.00 0.00 0.00 4.45
3111 4568 1.843368 ATCATGCAGTGGGTTTCCTG 58.157 50.000 0.00 0.00 0.00 3.86
3112 4569 2.684927 GCTATCATGCAGTGGGTTTCCT 60.685 50.000 0.00 0.00 0.00 3.36
3113 4570 1.678101 GCTATCATGCAGTGGGTTTCC 59.322 52.381 0.00 0.00 0.00 3.13
3114 4571 1.678101 GGCTATCATGCAGTGGGTTTC 59.322 52.381 0.00 0.00 34.04 2.78
3115 4572 1.686115 GGGCTATCATGCAGTGGGTTT 60.686 52.381 0.00 0.00 34.04 3.27
3116 4573 0.106519 GGGCTATCATGCAGTGGGTT 60.107 55.000 0.00 0.00 34.04 4.11
3117 4574 0.990282 AGGGCTATCATGCAGTGGGT 60.990 55.000 0.00 0.00 34.04 4.51
3118 4575 0.536687 CAGGGCTATCATGCAGTGGG 60.537 60.000 0.00 0.00 34.04 4.61
3119 4576 0.182061 ACAGGGCTATCATGCAGTGG 59.818 55.000 0.00 0.00 34.04 4.00
3120 4577 2.874701 GTTACAGGGCTATCATGCAGTG 59.125 50.000 0.00 0.00 34.04 3.66
3121 4578 2.483714 CGTTACAGGGCTATCATGCAGT 60.484 50.000 0.00 0.00 34.04 4.40
3122 4579 2.138320 CGTTACAGGGCTATCATGCAG 58.862 52.381 0.00 0.00 34.04 4.41
3123 4580 2.238942 CGTTACAGGGCTATCATGCA 57.761 50.000 0.00 0.00 34.04 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.