Multiple sequence alignment - TraesCS4A01G482000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G482000 chr4A 100.000 2168 0 0 617 2784 737479238 737481405 0.000000e+00 4004.0
1 TraesCS4A01G482000 chr4A 100.000 562 0 0 3071 3632 737481692 737482253 0.000000e+00 1038.0
2 TraesCS4A01G482000 chr4A 100.000 300 0 0 1 300 737478622 737478921 4.100000e-154 555.0
3 TraesCS4A01G482000 chr4A 83.396 265 17 10 1508 1772 624737984 624738221 1.700000e-53 220.0
4 TraesCS4A01G482000 chr4A 95.918 49 2 0 1068 1116 624737906 624737954 3.010000e-11 80.5
5 TraesCS4A01G482000 chr7D 90.266 2219 99 46 619 2782 5093688 5091532 0.000000e+00 2793.0
6 TraesCS4A01G482000 chr7D 88.488 582 34 17 3071 3632 5091499 5090931 0.000000e+00 673.0
7 TraesCS4A01G482000 chr7D 83.333 324 28 7 1 300 5094146 5093825 3.570000e-70 276.0
8 TraesCS4A01G482000 chr7A 89.761 2256 106 60 619 2782 6338285 6336063 0.000000e+00 2771.0
9 TraesCS4A01G482000 chr7A 88.285 589 33 16 3071 3632 6336030 6335451 0.000000e+00 673.0
10 TraesCS4A01G482000 chr6D 88.973 263 20 2 1510 1772 205119454 205119707 2.100000e-82 316.0
11 TraesCS4A01G482000 chr3D 80.227 440 30 22 1336 1772 14127930 14127545 9.930000e-71 278.0
12 TraesCS4A01G482000 chr3D 95.918 49 2 0 1068 1116 387312521 387312473 3.010000e-11 80.5
13 TraesCS4A01G482000 chr6B 82.943 299 48 3 2027 2325 68013545 68013840 2.150000e-67 267.0
14 TraesCS4A01G482000 chr1A 83.860 285 16 13 1508 1790 569372604 569372348 1.010000e-60 244.0
15 TraesCS4A01G482000 chr1A 91.837 49 4 0 1068 1116 569372682 569372634 6.510000e-08 69.4
16 TraesCS4A01G482000 chr4B 83.898 118 17 2 2201 2316 425290436 425290553 1.070000e-20 111.0
17 TraesCS4A01G482000 chr5D 91.071 56 5 0 2263 2318 304745865 304745810 3.890000e-10 76.8
18 TraesCS4A01G482000 chr2D 93.878 49 3 0 1068 1116 8148418 8148370 1.400000e-09 75.0
19 TraesCS4A01G482000 chr4D 96.875 32 1 0 1176 1207 143564335 143564304 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G482000 chr4A 737478622 737482253 3631 False 1865.666667 4004 100.000000 1 3632 3 chr4A.!!$F2 3631
1 TraesCS4A01G482000 chr7D 5090931 5094146 3215 True 1247.333333 2793 87.362333 1 3632 3 chr7D.!!$R1 3631
2 TraesCS4A01G482000 chr7A 6335451 6338285 2834 True 1722.000000 2771 89.023000 619 3632 2 chr7A.!!$R1 3013

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 116 0.032403 TTATAATCGGGTCGTGCCGG 59.968 55.0 0.0 0.0 38.44 6.13 F
883 927 0.535780 CATGGTGATGGTGGGATCGG 60.536 60.0 0.0 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 1599 0.758685 CTGGGGCTCGAGATCTCCTT 60.759 60.000 18.75 0.0 0.0 3.36 R
2632 2738 1.895707 CGCAAGGGGATGGATCAGC 60.896 63.158 0.00 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 4.326826 TGACTATTCTCAAGCAAAGGTGG 58.673 43.478 0.00 0.00 0.00 4.61
35 37 3.084786 ACTATTCTCAAGCAAAGGTGGC 58.915 45.455 0.00 0.00 0.00 5.01
40 42 1.138661 CTCAAGCAAAGGTGGCCAAAA 59.861 47.619 7.24 0.00 0.00 2.44
63 78 2.364973 TGGTCCTGATAGCCCGCA 60.365 61.111 0.00 0.00 0.00 5.69
70 85 4.314440 GATAGCCCGCATGCCCGA 62.314 66.667 13.15 0.00 0.00 5.14
78 93 2.877691 GCATGCCCGACCAGAAAC 59.122 61.111 6.36 0.00 0.00 2.78
79 94 1.971167 GCATGCCCGACCAGAAACA 60.971 57.895 6.36 0.00 0.00 2.83
92 107 5.526111 CGACCAGAAACATTTATAATCGGGT 59.474 40.000 7.34 7.34 40.52 5.28
93 108 6.292703 CGACCAGAAACATTTATAATCGGGTC 60.293 42.308 18.12 18.12 45.76 4.46
94 109 5.526111 ACCAGAAACATTTATAATCGGGTCG 59.474 40.000 2.99 0.00 34.17 4.79
100 116 0.032403 TTATAATCGGGTCGTGCCGG 59.968 55.000 0.00 0.00 38.44 6.13
101 117 1.108727 TATAATCGGGTCGTGCCGGT 61.109 55.000 1.90 0.00 38.56 5.28
140 156 2.124736 GCATGGGCCGCAAGACTA 60.125 61.111 0.00 0.00 43.02 2.59
141 157 1.748879 GCATGGGCCGCAAGACTAA 60.749 57.895 0.00 0.00 43.02 2.24
238 254 6.543735 CCCCCAAAACAACCCAAATAAAATA 58.456 36.000 0.00 0.00 0.00 1.40
253 269 8.458052 CCAAATAAAATAAACCCAAAATCAGGC 58.542 33.333 0.00 0.00 0.00 4.85
282 306 1.282570 GTGCCGATGGTGTTGTGTG 59.717 57.895 0.00 0.00 0.00 3.82
288 312 1.805428 GATGGTGTTGTGTGGTGCCC 61.805 60.000 0.00 0.00 0.00 5.36
695 722 4.001618 TGCACAATCAGCACTAACACTA 57.998 40.909 0.00 0.00 37.02 2.74
696 723 3.996363 TGCACAATCAGCACTAACACTAG 59.004 43.478 0.00 0.00 37.02 2.57
697 724 4.245660 GCACAATCAGCACTAACACTAGA 58.754 43.478 0.00 0.00 0.00 2.43
705 732 4.020543 AGCACTAACACTAGAGGAGGAAG 58.979 47.826 0.00 0.00 0.00 3.46
736 763 8.311395 AGGATGAAAAGGAAAGAAAGAAAAGT 57.689 30.769 0.00 0.00 0.00 2.66
774 801 1.548582 CCTTCCAACAGGGCATTCACT 60.549 52.381 0.00 0.00 36.21 3.41
788 815 3.527533 CATTCACTGGCCCATTCATTTG 58.472 45.455 0.00 0.00 0.00 2.32
881 925 3.426903 CCATGGTGATGGTGGGATC 57.573 57.895 2.57 0.00 43.98 3.36
883 927 0.535780 CATGGTGATGGTGGGATCGG 60.536 60.000 0.00 0.00 0.00 4.18
884 928 1.708993 ATGGTGATGGTGGGATCGGG 61.709 60.000 0.00 0.00 0.00 5.14
885 929 2.070039 GGTGATGGTGGGATCGGGA 61.070 63.158 0.00 0.00 0.00 5.14
937 986 4.769345 AATGGTGGCCAAGAAAGAAAAA 57.231 36.364 7.24 0.00 36.95 1.94
939 988 2.433970 TGGTGGCCAAGAAAGAAAAAGG 59.566 45.455 7.24 0.00 0.00 3.11
940 989 2.483876 GTGGCCAAGAAAGAAAAAGGC 58.516 47.619 7.24 0.00 41.29 4.35
987 1059 2.032634 CCACATACACGCGCACCTT 61.033 57.895 5.73 0.00 0.00 3.50
1110 1186 2.267961 CTGTACAACCGGAGCCCC 59.732 66.667 9.46 0.00 0.00 5.80
1260 1336 1.274712 AGGACAGCTCCTTTCTGAGG 58.725 55.000 0.00 0.00 45.77 3.86
1275 1351 1.227674 GAGGTGGATCATGGACGCC 60.228 63.158 0.00 0.00 35.06 5.68
1471 1571 1.272554 GGTCCATTTCCCCGTCTCCT 61.273 60.000 0.00 0.00 0.00 3.69
2110 2216 4.148825 CCTTCGACCCCTCCAGCG 62.149 72.222 0.00 0.00 0.00 5.18
2178 2284 3.118454 CACATCACGGTCGGCACC 61.118 66.667 0.00 0.00 39.69 5.01
2219 2325 4.180946 CTCCCTCCGCGTCGTGAG 62.181 72.222 7.51 4.03 0.00 3.51
2499 2605 2.100410 CTGCAGCTCAGCAATGCG 59.900 61.111 0.00 0.00 45.13 4.73
2610 2716 3.733960 CGGTCGGAGCTCGTGTCA 61.734 66.667 7.83 0.00 40.32 3.58
2635 2741 3.506096 CATGGCGGTGCTGAGCTG 61.506 66.667 5.83 0.00 0.00 4.24
2636 2742 3.709633 ATGGCGGTGCTGAGCTGA 61.710 61.111 5.83 0.00 0.00 4.26
2650 2756 1.895707 GCTGATCCATCCCCTTGCG 60.896 63.158 0.00 0.00 0.00 4.85
2658 2782 3.675619 ATCCCCTTGCGCGGTACAC 62.676 63.158 8.83 0.00 0.00 2.90
2691 2818 6.702723 TCATCTTGCCAAAACTTGAATCTTTG 59.297 34.615 0.00 0.00 0.00 2.77
2709 2836 2.060326 TGTCAAGCACGTACTACTGC 57.940 50.000 0.00 0.00 0.00 4.40
2766 2896 5.587844 ACTTACTAGCAATTTGAGGCATGAG 59.412 40.000 0.00 0.00 0.00 2.90
2782 2912 4.038402 GGCATGAGGAATGGAAATTCGAAT 59.962 41.667 4.39 4.39 36.71 3.34
2783 2913 4.980434 GCATGAGGAATGGAAATTCGAATG 59.020 41.667 12.25 0.00 36.71 2.67
3109 3239 5.282055 TGTAATCCTCCAGTGTGATCATC 57.718 43.478 0.00 0.00 0.00 2.92
3155 3285 8.856490 TTTCAGACTGATTCAAGTTTTTAAGC 57.144 30.769 5.87 0.00 0.00 3.09
3224 3354 5.620206 GGAAACCAACAAGGATTTTCCAAT 58.380 37.500 9.94 0.00 45.40 3.16
3229 3359 6.840527 ACCAACAAGGATTTTCCAATCAAAT 58.159 32.000 0.00 0.00 40.77 2.32
3230 3360 7.972301 ACCAACAAGGATTTTCCAATCAAATA 58.028 30.769 0.00 0.00 40.77 1.40
3232 3362 9.101655 CCAACAAGGATTTTCCAATCAAATATC 57.898 33.333 0.00 0.00 40.77 1.63
3233 3363 9.656040 CAACAAGGATTTTCCAATCAAATATCA 57.344 29.630 0.00 0.00 40.77 2.15
3245 3375 8.843262 TCCAATCAAATATCATCAGATCAACAC 58.157 33.333 0.00 0.00 35.67 3.32
3255 3385 8.659925 ATCATCAGATCAACACTAATTCAGTC 57.340 34.615 0.00 0.00 34.26 3.51
3266 3396 5.639506 ACACTAATTCAGTCGAATCCTGTTG 59.360 40.000 1.91 0.00 41.12 3.33
3274 3404 6.227522 TCAGTCGAATCCTGTTGTAATTTGA 58.772 36.000 1.91 0.00 0.00 2.69
3276 3406 6.797033 CAGTCGAATCCTGTTGTAATTTGAAC 59.203 38.462 0.00 0.00 0.00 3.18
3280 3410 7.876068 TCGAATCCTGTTGTAATTTGAACTAGT 59.124 33.333 0.00 0.00 0.00 2.57
3283 3413 7.900782 TCCTGTTGTAATTTGAACTAGTAGC 57.099 36.000 0.00 0.00 0.00 3.58
3284 3414 7.446769 TCCTGTTGTAATTTGAACTAGTAGCA 58.553 34.615 0.00 0.00 0.00 3.49
3285 3415 7.602644 TCCTGTTGTAATTTGAACTAGTAGCAG 59.397 37.037 0.00 0.00 0.00 4.24
3287 3417 8.534333 TGTTGTAATTTGAACTAGTAGCAGAG 57.466 34.615 0.00 0.00 0.00 3.35
3309 3452 9.264719 CAGAGTATGTATGCAACTGATTGATTA 57.735 33.333 0.00 0.00 38.15 1.75
3345 3488 9.004231 ACAGATCCCTAATTAAACCAGAGTATT 57.996 33.333 0.00 0.00 0.00 1.89
3395 3543 6.318648 CCTGCAACTAAGGTTTTATGCTGATA 59.681 38.462 0.00 0.00 32.73 2.15
3509 3657 5.708948 TGTGATGTGCCTTTATTTACAAGC 58.291 37.500 0.00 0.00 0.00 4.01
3540 3688 4.062677 TGTACCAGTACCTTTCACACAC 57.937 45.455 5.53 0.00 35.26 3.82
3585 3735 8.139989 CACATATTTTCCTTTCCTCCATGAATC 58.860 37.037 0.00 0.00 0.00 2.52
3617 3780 6.723298 TTTCCTCAGCTTGGAAATTACAAA 57.277 33.333 20.70 3.89 45.39 2.83
3618 3781 6.723298 TTCCTCAGCTTGGAAATTACAAAA 57.277 33.333 13.80 0.00 40.25 2.44
3619 3782 6.723298 TCCTCAGCTTGGAAATTACAAAAA 57.277 33.333 2.90 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 0.251742 TCAGGACCAGCCCATTTTGG 60.252 55.000 0.00 0.00 40.38 3.28
40 42 2.149530 GCTATCAGGACCAGCCCAT 58.850 57.895 0.00 0.00 37.37 4.00
63 78 1.923356 AAATGTTTCTGGTCGGGCAT 58.077 45.000 0.00 0.00 0.00 4.40
70 85 5.526111 CGACCCGATTATAAATGTTTCTGGT 59.474 40.000 0.33 0.33 0.00 4.00
78 93 3.806316 GGCACGACCCGATTATAAATG 57.194 47.619 0.00 0.00 0.00 2.32
134 150 1.512926 CGGCACTTGTGCTTAGTCTT 58.487 50.000 22.55 0.00 34.73 3.01
140 156 1.959226 CGTACCGGCACTTGTGCTT 60.959 57.895 22.55 11.56 34.73 3.91
141 157 2.357034 CGTACCGGCACTTGTGCT 60.357 61.111 22.55 8.20 34.73 4.40
194 210 4.201657 GGGGGCTAATTCGTAAAAAGCTA 58.798 43.478 0.00 0.00 33.67 3.32
230 246 6.821160 CCGCCTGATTTTGGGTTTATTTTATT 59.179 34.615 0.00 0.00 0.00 1.40
238 254 1.191489 CCCCGCCTGATTTTGGGTTT 61.191 55.000 0.00 0.00 40.20 3.27
616 640 3.127376 GCAATTTGCATTGGTGAATTCCC 59.873 43.478 16.35 4.57 44.26 3.97
617 641 4.345271 GCAATTTGCATTGGTGAATTCC 57.655 40.909 16.35 0.00 44.26 3.01
684 711 4.017808 TCTTCCTCCTCTAGTGTTAGTGC 58.982 47.826 0.00 0.00 0.00 4.40
695 722 3.206412 TCATCCTAGCTTCTTCCTCCTCT 59.794 47.826 0.00 0.00 0.00 3.69
696 723 3.571590 TCATCCTAGCTTCTTCCTCCTC 58.428 50.000 0.00 0.00 0.00 3.71
697 724 3.697190 TCATCCTAGCTTCTTCCTCCT 57.303 47.619 0.00 0.00 0.00 3.69
705 732 7.391833 TCTTTCTTTCCTTTTCATCCTAGCTTC 59.608 37.037 0.00 0.00 0.00 3.86
774 801 4.081531 GTGAAATCTCAAATGAATGGGCCA 60.082 41.667 9.61 9.61 31.88 5.36
788 815 5.048083 ACTGAGTGAGAGTGAGTGAAATCTC 60.048 44.000 0.00 0.00 38.91 2.75
880 924 1.266160 TTTTATGCCCTCCGTCCCGA 61.266 55.000 0.00 0.00 0.00 5.14
881 925 0.814010 CTTTTATGCCCTCCGTCCCG 60.814 60.000 0.00 0.00 0.00 5.14
883 927 1.485066 TCTCTTTTATGCCCTCCGTCC 59.515 52.381 0.00 0.00 0.00 4.79
884 928 2.431057 TCTCTCTTTTATGCCCTCCGTC 59.569 50.000 0.00 0.00 0.00 4.79
885 929 2.168728 GTCTCTCTTTTATGCCCTCCGT 59.831 50.000 0.00 0.00 0.00 4.69
892 936 7.985634 TTGTTTTTGTGTCTCTCTTTTATGC 57.014 32.000 0.00 0.00 0.00 3.14
937 986 4.758251 TGCGCGTGTATGCTGCCT 62.758 61.111 8.43 0.00 34.86 4.75
939 988 3.787676 TGTGCGCGTGTATGCTGC 61.788 61.111 8.43 0.00 35.80 5.25
940 989 2.096406 GTGTGCGCGTGTATGCTG 59.904 61.111 8.43 0.00 0.00 4.41
987 1059 3.309296 GGTGATCATAAGTGGAGAGGGA 58.691 50.000 0.00 0.00 0.00 4.20
1254 1330 1.114627 CGTCCATGATCCACCTCAGA 58.885 55.000 0.00 0.00 0.00 3.27
1257 1333 1.227674 GGCGTCCATGATCCACCTC 60.228 63.158 0.00 0.00 0.00 3.85
1258 1334 2.911143 GGCGTCCATGATCCACCT 59.089 61.111 0.00 0.00 0.00 4.00
1260 1336 2.588877 CCGGCGTCCATGATCCAC 60.589 66.667 6.01 0.00 0.00 4.02
1336 1412 3.083997 CGGGGTCAGGAAGGAGGG 61.084 72.222 0.00 0.00 0.00 4.30
1337 1413 3.787001 GCGGGGTCAGGAAGGAGG 61.787 72.222 0.00 0.00 0.00 4.30
1338 1414 3.787001 GGCGGGGTCAGGAAGGAG 61.787 72.222 0.00 0.00 0.00 3.69
1484 1587 4.856607 CTCCTTCTCGGACGGCGC 62.857 72.222 6.90 0.00 36.69 6.53
1496 1599 0.758685 CTGGGGCTCGAGATCTCCTT 60.759 60.000 18.75 0.00 0.00 3.36
1716 1822 4.200283 GAGAGGACGGAGCCTGCG 62.200 72.222 3.36 3.36 38.73 5.18
1717 1823 4.200283 CGAGAGGACGGAGCCTGC 62.200 72.222 0.00 0.00 38.73 4.85
1718 1824 4.200283 GCGAGAGGACGGAGCCTG 62.200 72.222 0.00 0.00 38.73 4.85
2058 2164 4.115199 AACGGGATGCCCAGCTCC 62.115 66.667 0.00 0.00 45.83 4.70
2202 2308 4.180946 CTCACGACGCGGAGGGAG 62.181 72.222 18.30 18.30 46.37 4.30
2236 2342 3.392440 GTCCACGCACACGACGAC 61.392 66.667 0.00 0.00 43.93 4.34
2325 2431 2.126424 GTGTCCAGCGACTCGACC 60.126 66.667 1.63 0.00 39.94 4.79
2632 2738 1.895707 CGCAAGGGGATGGATCAGC 60.896 63.158 0.00 0.00 0.00 4.26
2633 2739 1.895707 GCGCAAGGGGATGGATCAG 60.896 63.158 0.30 0.00 38.28 2.90
2634 2740 2.192979 GCGCAAGGGGATGGATCA 59.807 61.111 0.30 0.00 38.28 2.92
2650 2756 3.846360 AGATGAACTACAAGTGTACCGC 58.154 45.455 0.00 0.00 0.00 5.68
2658 2782 6.076981 AGTTTTGGCAAGATGAACTACAAG 57.923 37.500 12.13 0.00 0.00 3.16
2691 2818 1.986378 CTGCAGTAGTACGTGCTTGAC 59.014 52.381 12.53 4.85 40.54 3.18
2736 2863 9.109393 TGCCTCAAATTGCTAGTAAGTAATAAG 57.891 33.333 0.00 0.00 37.08 1.73
2737 2864 9.627123 ATGCCTCAAATTGCTAGTAAGTAATAA 57.373 29.630 0.00 0.00 37.08 1.40
2738 2865 9.056005 CATGCCTCAAATTGCTAGTAAGTAATA 57.944 33.333 0.00 0.00 37.08 0.98
2739 2866 7.775093 TCATGCCTCAAATTGCTAGTAAGTAAT 59.225 33.333 0.00 0.00 39.43 1.89
3085 3215 5.497464 TGATCACACTGGAGGATTACAAA 57.503 39.130 0.00 0.00 0.00 2.83
3109 3239 7.860613 TGAAAATATGACTGGCATAATACACG 58.139 34.615 7.40 0.00 42.45 4.49
3143 3273 8.039603 AGAAACAAAAAGGGCTTAAAAACTTG 57.960 30.769 0.00 0.00 0.00 3.16
3149 3279 5.897250 AGGAGAGAAACAAAAAGGGCTTAAA 59.103 36.000 0.00 0.00 0.00 1.52
3150 3280 5.454966 AGGAGAGAAACAAAAAGGGCTTAA 58.545 37.500 0.00 0.00 0.00 1.85
3151 3281 5.061721 AGGAGAGAAACAAAAAGGGCTTA 57.938 39.130 0.00 0.00 0.00 3.09
3155 3285 5.360999 ACAAAGAGGAGAGAAACAAAAAGGG 59.639 40.000 0.00 0.00 0.00 3.95
3199 3329 5.029807 GGAAAATCCTTGTTGGTTTCCAA 57.970 39.130 8.28 0.00 44.28 3.53
3206 3336 9.101655 GATATTTGATTGGAAAATCCTTGTTGG 57.898 33.333 0.00 0.00 37.46 3.77
3229 3359 9.755804 GACTGAATTAGTGTTGATCTGATGATA 57.244 33.333 0.00 0.00 40.53 2.15
3230 3360 7.437565 CGACTGAATTAGTGTTGATCTGATGAT 59.562 37.037 0.00 0.00 40.53 2.45
3232 3362 6.753744 TCGACTGAATTAGTGTTGATCTGATG 59.246 38.462 0.00 0.00 40.53 3.07
3233 3363 6.867550 TCGACTGAATTAGTGTTGATCTGAT 58.132 36.000 0.00 0.00 40.53 2.90
3234 3364 6.267496 TCGACTGAATTAGTGTTGATCTGA 57.733 37.500 0.00 0.00 40.53 3.27
3235 3365 6.951256 TTCGACTGAATTAGTGTTGATCTG 57.049 37.500 0.00 0.00 40.53 2.90
3236 3366 6.758886 GGATTCGACTGAATTAGTGTTGATCT 59.241 38.462 0.00 0.00 44.79 2.75
3237 3367 6.758886 AGGATTCGACTGAATTAGTGTTGATC 59.241 38.462 0.00 0.00 44.79 2.92
3239 3369 5.869344 CAGGATTCGACTGAATTAGTGTTGA 59.131 40.000 0.00 0.00 44.79 3.18
3240 3370 5.639506 ACAGGATTCGACTGAATTAGTGTTG 59.360 40.000 8.38 0.00 44.79 3.33
3245 3375 7.827819 TTACAACAGGATTCGACTGAATTAG 57.172 36.000 8.38 0.00 44.79 1.73
3255 3385 8.029642 ACTAGTTCAAATTACAACAGGATTCG 57.970 34.615 0.00 0.00 0.00 3.34
3266 3396 9.804758 ACATACTCTGCTACTAGTTCAAATTAC 57.195 33.333 0.00 0.00 0.00 1.89
3274 3404 6.961360 TGCATACATACTCTGCTACTAGTT 57.039 37.500 0.00 0.00 36.84 2.24
3276 3406 6.860539 CAGTTGCATACATACTCTGCTACTAG 59.139 42.308 9.76 0.00 45.59 2.57
3280 3410 5.852282 TCAGTTGCATACATACTCTGCTA 57.148 39.130 0.00 0.00 36.84 3.49
3283 3413 7.725818 ATCAATCAGTTGCATACATACTCTG 57.274 36.000 0.00 0.00 35.26 3.35
3284 3414 9.836864 TTAATCAATCAGTTGCATACATACTCT 57.163 29.630 0.00 0.00 35.26 3.24
3309 3452 8.934023 TTAATTAGGGATCTGTTGAACACTTT 57.066 30.769 0.00 0.00 31.06 2.66
3345 3488 9.599866 GGCTGATTTATGCATACATACATAGTA 57.400 33.333 5.74 0.00 38.50 1.82
3346 3489 8.324306 AGGCTGATTTATGCATACATACATAGT 58.676 33.333 5.74 0.00 38.50 2.12
3347 3490 8.610035 CAGGCTGATTTATGCATACATACATAG 58.390 37.037 9.42 4.20 38.50 2.23
3363 3511 3.160679 ACCTTAGTTGCAGGCTGATTT 57.839 42.857 20.86 2.50 34.32 2.17
3509 3657 2.093128 GGTACTGGTACAATGGACCTGG 60.093 54.545 22.90 14.66 39.54 4.45
3562 3710 9.086758 GATGATTCATGGAGGAAAGGAAAATAT 57.913 33.333 3.32 0.00 0.00 1.28
3564 3712 6.325804 GGATGATTCATGGAGGAAAGGAAAAT 59.674 38.462 3.32 0.00 0.00 1.82
3570 3720 4.789807 ACAGGATGATTCATGGAGGAAAG 58.210 43.478 3.32 0.00 39.69 2.62
3585 3735 3.057033 CCAAGCTGAGGAAAAACAGGATG 60.057 47.826 0.00 0.00 46.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.