Multiple sequence alignment - TraesCS4A01G481600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G481600 chr4A 100.000 4621 0 0 1 4621 737366262 737370882 0.000000e+00 8534.0
1 TraesCS4A01G481600 chr4A 82.961 2465 332 51 463 2901 737289552 737287150 0.000000e+00 2145.0
2 TraesCS4A01G481600 chr4A 84.621 1424 188 21 644 2056 737296833 737295430 0.000000e+00 1387.0
3 TraesCS4A01G481600 chr4A 86.219 1161 144 10 439 1594 737158407 737157258 0.000000e+00 1243.0
4 TraesCS4A01G481600 chr4A 84.939 1142 160 8 438 1576 737200348 737199216 0.000000e+00 1146.0
5 TraesCS4A01G481600 chr4A 83.190 928 128 17 2350 3255 737156566 737155645 0.000000e+00 824.0
6 TraesCS4A01G481600 chr4A 82.309 927 132 21 2238 3155 737198682 737197779 0.000000e+00 774.0
7 TraesCS4A01G481600 chr4A 83.111 450 67 7 1627 2068 737199207 737198759 7.200000e-108 401.0
8 TraesCS4A01G481600 chr4A 86.631 187 21 4 464 647 737297220 737297035 2.180000e-48 204.0
9 TraesCS4A01G481600 chr4A 89.474 133 14 0 1 133 163869694 163869562 7.950000e-38 169.0
10 TraesCS4A01G481600 chr7D 94.203 3243 134 22 297 3492 5182753 5179518 0.000000e+00 4898.0
11 TraesCS4A01G481600 chr7D 85.055 1646 211 25 463 2090 5331843 5333471 0.000000e+00 1644.0
12 TraesCS4A01G481600 chr7D 85.541 823 99 13 2350 3155 5333792 5334611 0.000000e+00 843.0
13 TraesCS4A01G481600 chr7D 94.141 256 15 0 3987 4242 575661400 575661145 1.560000e-104 390.0
14 TraesCS4A01G481600 chr7D 90.299 268 21 4 3507 3772 5179534 5179270 3.420000e-91 346.0
15 TraesCS4A01G481600 chr7D 88.085 235 27 1 2922 3156 5334645 5334878 1.270000e-70 278.0
16 TraesCS4A01G481600 chr7D 93.878 49 3 0 3162 3210 5334903 5334951 1.780000e-09 75.0
17 TraesCS4A01G481600 chr7A 91.853 1031 70 5 1079 2104 6525806 6524785 0.000000e+00 1426.0
18 TraesCS4A01G481600 chr7A 84.839 1273 165 22 463 1723 6653215 6654471 0.000000e+00 1256.0
19 TraesCS4A01G481600 chr7A 81.491 1556 240 29 1621 3150 6769210 6770743 0.000000e+00 1234.0
20 TraesCS4A01G481600 chr7A 90.046 864 71 13 2636 3492 6511199 6510344 0.000000e+00 1105.0
21 TraesCS4A01G481600 chr7A 84.764 932 120 16 444 1364 6664465 6665385 0.000000e+00 915.0
22 TraesCS4A01G481600 chr7A 91.304 621 47 3 372 985 6526429 6525809 0.000000e+00 841.0
23 TraesCS4A01G481600 chr7A 85.486 813 100 11 2350 3145 6655462 6656273 0.000000e+00 832.0
24 TraesCS4A01G481600 chr7A 85.181 803 107 11 1364 2158 6665422 6666220 0.000000e+00 813.0
25 TraesCS4A01G481600 chr7A 83.352 907 116 20 2368 3251 6666233 6667127 0.000000e+00 806.0
26 TraesCS4A01G481600 chr7A 87.234 376 31 11 2268 2642 6524486 6524127 3.330000e-111 412.0
27 TraesCS4A01G481600 chr7A 84.881 377 49 3 1720 2090 6654773 6655147 1.570000e-99 374.0
28 TraesCS4A01G481600 chr7A 89.333 225 24 0 2922 3146 6656316 6656540 2.720000e-72 283.0
29 TraesCS4A01G481600 chr7A 87.273 55 7 0 3156 3210 6656568 6656622 3.860000e-06 63.9
30 TraesCS4A01G481600 chr1B 97.372 647 14 3 3976 4621 461905404 461904760 0.000000e+00 1098.0
31 TraesCS4A01G481600 chr1B 86.628 344 30 9 4237 4566 647467493 647467152 2.630000e-97 366.0
32 TraesCS4A01G481600 chr7B 96.094 256 10 0 3987 4242 693337138 693336883 7.150000e-113 418.0
33 TraesCS4A01G481600 chrUn 95.703 256 11 0 3987 4242 289849867 289849612 3.330000e-111 412.0
34 TraesCS4A01G481600 chr5D 94.531 256 14 0 3987 4242 90296725 90296470 3.350000e-106 396.0
35 TraesCS4A01G481600 chr5D 94.163 257 15 0 3986 4242 564880001 564879745 4.330000e-105 392.0
36 TraesCS4A01G481600 chr5D 90.625 128 12 0 1 128 377354089 377354216 2.210000e-38 171.0
37 TraesCS4A01G481600 chr5D 94.872 39 2 0 2414 2452 526428417 526428379 1.390000e-05 62.1
38 TraesCS4A01G481600 chr4B 94.531 256 14 0 3987 4242 322753917 322753662 3.350000e-106 396.0
39 TraesCS4A01G481600 chr4B 87.324 284 27 5 4237 4514 302741751 302741471 2.680000e-82 316.0
40 TraesCS4A01G481600 chr3D 93.893 262 16 0 3978 4239 355107120 355107381 3.350000e-106 396.0
41 TraesCS4A01G481600 chr3D 94.488 254 14 0 3986 4239 419619619 419619872 4.330000e-105 392.0
42 TraesCS4A01G481600 chr5B 87.500 344 27 5 4237 4566 589436035 589435694 2.610000e-102 383.0
43 TraesCS4A01G481600 chr5B 87.500 344 27 5 4237 4566 589447200 589446859 2.610000e-102 383.0
44 TraesCS4A01G481600 chr4D 87.172 343 30 7 4237 4566 465895746 465895405 1.210000e-100 377.0
45 TraesCS4A01G481600 chr4D 88.489 139 16 0 2 140 72089167 72089305 7.950000e-38 169.0
46 TraesCS4A01G481600 chr4D 88.372 129 11 3 4237 4361 500525819 500525691 8.010000e-33 152.0
47 TraesCS4A01G481600 chr3B 86.919 344 29 5 4237 4566 355507914 355508255 5.650000e-99 372.0
48 TraesCS4A01G481600 chr3B 84.570 337 38 7 4237 4566 153618046 153618375 5.770000e-84 322.0
49 TraesCS4A01G481600 chr5A 84.570 337 31 9 4237 4566 325194279 325194601 9.650000e-82 315.0
50 TraesCS4A01G481600 chr6D 90.769 130 12 0 1 130 94757317 94757446 1.710000e-39 174.0
51 TraesCS4A01G481600 chr6D 87.770 139 17 0 2 140 397209698 397209836 3.700000e-36 163.0
52 TraesCS4A01G481600 chr2D 89.130 138 15 0 3 140 76064148 76064285 6.150000e-39 172.0
53 TraesCS4A01G481600 chr2D 87.770 139 17 0 2 140 191678492 191678630 3.700000e-36 163.0
54 TraesCS4A01G481600 chr2D 87.368 95 12 0 4237 4331 588506890 588506984 4.890000e-20 110.0
55 TraesCS4A01G481600 chr1D 90.625 128 12 0 1 128 105944263 105944136 2.210000e-38 171.0
56 TraesCS4A01G481600 chr1D 90.076 131 13 0 1 131 110982717 110982587 2.210000e-38 171.0
57 TraesCS4A01G481600 chr2B 85.714 98 14 0 4249 4346 249527037 249527134 2.270000e-18 104.0
58 TraesCS4A01G481600 chr6B 93.478 46 3 0 4237 4282 320517352 320517307 8.300000e-08 69.4
59 TraesCS4A01G481600 chr6B 100.000 28 0 0 4237 4264 123019540 123019567 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G481600 chr4A 737366262 737370882 4620 False 8534.000000 8534 100.000000 1 4621 1 chr4A.!!$F1 4620
1 TraesCS4A01G481600 chr4A 737287150 737289552 2402 True 2145.000000 2145 82.961000 463 2901 1 chr4A.!!$R2 2438
2 TraesCS4A01G481600 chr4A 737155645 737158407 2762 True 1033.500000 1243 84.704500 439 3255 2 chr4A.!!$R3 2816
3 TraesCS4A01G481600 chr4A 737295430 737297220 1790 True 795.500000 1387 85.626000 464 2056 2 chr4A.!!$R5 1592
4 TraesCS4A01G481600 chr4A 737197779 737200348 2569 True 773.666667 1146 83.453000 438 3155 3 chr4A.!!$R4 2717
5 TraesCS4A01G481600 chr7D 5179270 5182753 3483 True 2622.000000 4898 92.251000 297 3772 2 chr7D.!!$R2 3475
6 TraesCS4A01G481600 chr7D 5331843 5334951 3108 False 710.000000 1644 88.139750 463 3210 4 chr7D.!!$F1 2747
7 TraesCS4A01G481600 chr7A 6769210 6770743 1533 False 1234.000000 1234 81.491000 1621 3150 1 chr7A.!!$F1 1529
8 TraesCS4A01G481600 chr7A 6510344 6511199 855 True 1105.000000 1105 90.046000 2636 3492 1 chr7A.!!$R1 856
9 TraesCS4A01G481600 chr7A 6524127 6526429 2302 True 893.000000 1426 90.130333 372 2642 3 chr7A.!!$R2 2270
10 TraesCS4A01G481600 chr7A 6664465 6667127 2662 False 844.666667 915 84.432333 444 3251 3 chr7A.!!$F3 2807
11 TraesCS4A01G481600 chr7A 6653215 6656622 3407 False 561.780000 1256 86.362400 463 3210 5 chr7A.!!$F2 2747
12 TraesCS4A01G481600 chr1B 461904760 461905404 644 True 1098.000000 1098 97.372000 3976 4621 1 chr1B.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.033306 AGGACGGAGGGAGTAGGTTC 60.033 60.0 0.00 0.0 0.00 3.62 F
140 141 0.034380 GGGAGTAGGTTCCAAAGGCC 60.034 60.0 0.00 0.0 39.09 5.19 F
355 356 0.321653 GACTTCCCAACCACAGCGAT 60.322 55.0 0.00 0.0 0.00 4.58 F
1180 1423 1.284982 GCAGAGTATACATGCCGCCG 61.285 60.0 17.77 0.0 33.81 6.46 F
2791 3627 1.681229 TAATGGCAGGAAAGGAGGGT 58.319 50.0 0.00 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 2390 0.988145 CCATCCTTCAGCACCCCCTA 60.988 60.000 0.00 0.0 0.00 3.53 R
2168 2832 4.016444 ACCCAACCATGAATCATGTGTAC 58.984 43.478 20.39 0.0 39.94 2.90 R
2207 2873 4.175962 ACCCTATCTCCTTTCTTGTTGGA 58.824 43.478 0.00 0.0 0.00 3.53 R
2888 3727 0.395724 GGGAACAGGGGTAAGGCATG 60.396 60.000 0.00 0.0 0.00 4.06 R
3944 5360 0.110056 CAAATCGTCAGCACACAGGC 60.110 55.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.406828 CATGAACCTAATGCTGATAATTTGATG 57.593 33.333 0.00 0.00 0.00 3.07
27 28 7.944061 TGAACCTAATGCTGATAATTTGATGG 58.056 34.615 0.00 0.00 0.00 3.51
28 29 6.336842 ACCTAATGCTGATAATTTGATGGC 57.663 37.500 0.00 0.00 0.00 4.40
29 30 5.834742 ACCTAATGCTGATAATTTGATGGCA 59.165 36.000 0.00 0.00 0.00 4.92
30 31 6.495872 ACCTAATGCTGATAATTTGATGGCAT 59.504 34.615 0.00 0.00 40.04 4.40
31 32 7.670979 ACCTAATGCTGATAATTTGATGGCATA 59.329 33.333 0.00 0.00 37.85 3.14
32 33 8.525316 CCTAATGCTGATAATTTGATGGCATAA 58.475 33.333 0.00 0.00 37.85 1.90
33 34 9.917129 CTAATGCTGATAATTTGATGGCATAAA 57.083 29.630 0.00 0.00 37.85 1.40
35 36 8.771920 ATGCTGATAATTTGATGGCATAAATG 57.228 30.769 0.00 0.00 37.20 2.32
36 37 7.728148 TGCTGATAATTTGATGGCATAAATGT 58.272 30.769 0.00 0.00 0.00 2.71
37 38 8.205512 TGCTGATAATTTGATGGCATAAATGTT 58.794 29.630 0.00 0.57 0.00 2.71
38 39 8.492748 GCTGATAATTTGATGGCATAAATGTTG 58.507 33.333 0.00 0.48 0.00 3.33
39 40 8.890124 TGATAATTTGATGGCATAAATGTTGG 57.110 30.769 0.00 0.00 0.00 3.77
40 41 8.484575 TGATAATTTGATGGCATAAATGTTGGT 58.515 29.630 0.00 0.00 0.00 3.67
41 42 6.988622 AATTTGATGGCATAAATGTTGGTG 57.011 33.333 0.00 0.00 0.00 4.17
42 43 5.480642 TTTGATGGCATAAATGTTGGTGT 57.519 34.783 0.00 0.00 0.00 4.16
43 44 6.596309 TTTGATGGCATAAATGTTGGTGTA 57.404 33.333 0.00 0.00 0.00 2.90
44 45 6.788598 TTGATGGCATAAATGTTGGTGTAT 57.211 33.333 0.00 0.00 0.00 2.29
45 46 7.888250 TTGATGGCATAAATGTTGGTGTATA 57.112 32.000 0.00 0.00 0.00 1.47
46 47 7.888250 TGATGGCATAAATGTTGGTGTATAA 57.112 32.000 0.00 0.00 0.00 0.98
47 48 8.476064 TGATGGCATAAATGTTGGTGTATAAT 57.524 30.769 0.00 0.00 0.00 1.28
48 49 8.922237 TGATGGCATAAATGTTGGTGTATAATT 58.078 29.630 0.00 0.00 0.00 1.40
49 50 9.195411 GATGGCATAAATGTTGGTGTATAATTG 57.805 33.333 0.00 0.00 0.00 2.32
50 51 8.072321 TGGCATAAATGTTGGTGTATAATTGT 57.928 30.769 0.00 0.00 0.00 2.71
51 52 9.190317 TGGCATAAATGTTGGTGTATAATTGTA 57.810 29.630 0.00 0.00 0.00 2.41
97 98 7.420184 AAGTTTGACTTTTCAACAAAGTTGG 57.580 32.000 9.72 0.00 41.64 3.77
98 99 6.754193 AGTTTGACTTTTCAACAAAGTTGGA 58.246 32.000 9.72 0.00 41.64 3.53
99 100 7.213678 AGTTTGACTTTTCAACAAAGTTGGAA 58.786 30.769 9.72 4.88 41.64 3.53
100 101 7.384932 AGTTTGACTTTTCAACAAAGTTGGAAG 59.615 33.333 17.28 17.28 41.64 3.46
101 102 5.167845 TGACTTTTCAACAAAGTTGGAAGC 58.832 37.500 18.10 13.96 40.27 3.86
102 103 5.146010 ACTTTTCAACAAAGTTGGAAGCA 57.854 34.783 18.10 2.66 37.18 3.91
103 104 4.929211 ACTTTTCAACAAAGTTGGAAGCAC 59.071 37.500 18.10 0.00 37.18 4.40
104 105 4.527509 TTTCAACAAAGTTGGAAGCACA 57.472 36.364 9.72 0.00 0.00 4.57
105 106 3.502191 TCAACAAAGTTGGAAGCACAC 57.498 42.857 9.72 0.00 0.00 3.82
106 107 3.088532 TCAACAAAGTTGGAAGCACACT 58.911 40.909 9.72 0.00 0.00 3.55
107 108 3.509575 TCAACAAAGTTGGAAGCACACTT 59.490 39.130 9.72 0.00 39.43 3.16
108 109 4.021544 TCAACAAAGTTGGAAGCACACTTT 60.022 37.500 9.72 0.00 35.82 2.66
109 110 4.535526 ACAAAGTTGGAAGCACACTTTT 57.464 36.364 0.00 0.00 35.82 2.27
110 111 4.893608 ACAAAGTTGGAAGCACACTTTTT 58.106 34.783 0.00 0.00 35.82 1.94
128 129 4.813750 TTTTTAAGGACGGAGGGAGTAG 57.186 45.455 0.00 0.00 0.00 2.57
129 130 2.449137 TTAAGGACGGAGGGAGTAGG 57.551 55.000 0.00 0.00 0.00 3.18
130 131 1.302907 TAAGGACGGAGGGAGTAGGT 58.697 55.000 0.00 0.00 0.00 3.08
131 132 0.412640 AAGGACGGAGGGAGTAGGTT 59.587 55.000 0.00 0.00 0.00 3.50
132 133 0.033306 AGGACGGAGGGAGTAGGTTC 60.033 60.000 0.00 0.00 0.00 3.62
133 134 1.042003 GGACGGAGGGAGTAGGTTCC 61.042 65.000 0.00 0.00 36.46 3.62
134 135 0.324091 GACGGAGGGAGTAGGTTCCA 60.324 60.000 0.00 0.00 39.09 3.53
135 136 0.115745 ACGGAGGGAGTAGGTTCCAA 59.884 55.000 0.00 0.00 39.09 3.53
136 137 1.272807 CGGAGGGAGTAGGTTCCAAA 58.727 55.000 0.00 0.00 39.09 3.28
137 138 1.207329 CGGAGGGAGTAGGTTCCAAAG 59.793 57.143 0.00 0.00 39.09 2.77
138 139 1.560146 GGAGGGAGTAGGTTCCAAAGG 59.440 57.143 0.00 0.00 39.09 3.11
139 140 0.992695 AGGGAGTAGGTTCCAAAGGC 59.007 55.000 0.00 0.00 39.09 4.35
140 141 0.034380 GGGAGTAGGTTCCAAAGGCC 60.034 60.000 0.00 0.00 39.09 5.19
141 142 0.696501 GGAGTAGGTTCCAAAGGCCA 59.303 55.000 5.01 0.00 37.20 5.36
142 143 1.074889 GGAGTAGGTTCCAAAGGCCAA 59.925 52.381 5.01 0.00 37.20 4.52
143 144 2.490168 GGAGTAGGTTCCAAAGGCCAAA 60.490 50.000 5.01 0.00 37.20 3.28
144 145 3.431415 GAGTAGGTTCCAAAGGCCAAAT 58.569 45.455 5.01 0.00 0.00 2.32
145 146 4.569015 GGAGTAGGTTCCAAAGGCCAAATA 60.569 45.833 5.01 0.00 37.20 1.40
146 147 5.005628 AGTAGGTTCCAAAGGCCAAATAA 57.994 39.130 5.01 0.00 0.00 1.40
147 148 5.399113 AGTAGGTTCCAAAGGCCAAATAAA 58.601 37.500 5.01 0.00 0.00 1.40
148 149 5.841783 AGTAGGTTCCAAAGGCCAAATAAAA 59.158 36.000 5.01 0.00 0.00 1.52
149 150 5.638530 AGGTTCCAAAGGCCAAATAAAAA 57.361 34.783 5.01 0.00 0.00 1.94
150 151 5.620206 AGGTTCCAAAGGCCAAATAAAAAG 58.380 37.500 5.01 0.00 0.00 2.27
151 152 4.215399 GGTTCCAAAGGCCAAATAAAAAGC 59.785 41.667 5.01 0.00 0.00 3.51
152 153 4.014569 TCCAAAGGCCAAATAAAAAGCC 57.985 40.909 5.01 0.00 46.13 4.35
162 163 8.593492 GGCCAAATAAAAAGCCATCTAATTAG 57.407 34.615 6.11 6.11 45.07 1.73
163 164 8.421002 GGCCAAATAAAAAGCCATCTAATTAGA 58.579 33.333 17.32 17.32 45.07 2.10
164 165 9.987272 GCCAAATAAAAAGCCATCTAATTAGAT 57.013 29.630 20.20 20.20 43.51 1.98
193 194 9.638239 TTAATAGACTTCAATTCATGCCAAAAC 57.362 29.630 0.00 0.00 0.00 2.43
194 195 5.796424 AGACTTCAATTCATGCCAAAACT 57.204 34.783 0.00 0.00 0.00 2.66
195 196 5.535333 AGACTTCAATTCATGCCAAAACTG 58.465 37.500 0.00 0.00 0.00 3.16
196 197 5.302568 AGACTTCAATTCATGCCAAAACTGA 59.697 36.000 0.00 0.00 0.00 3.41
197 198 5.916318 ACTTCAATTCATGCCAAAACTGAA 58.084 33.333 0.00 0.00 33.75 3.02
198 199 6.347696 ACTTCAATTCATGCCAAAACTGAAA 58.652 32.000 0.00 0.00 33.03 2.69
199 200 6.822676 ACTTCAATTCATGCCAAAACTGAAAA 59.177 30.769 0.00 0.00 33.03 2.29
200 201 7.499895 ACTTCAATTCATGCCAAAACTGAAAAT 59.500 29.630 0.00 0.00 33.03 1.82
201 202 8.899427 TTCAATTCATGCCAAAACTGAAAATA 57.101 26.923 0.00 0.00 33.03 1.40
202 203 8.309163 TCAATTCATGCCAAAACTGAAAATAC 57.691 30.769 0.00 0.00 33.03 1.89
203 204 7.930325 TCAATTCATGCCAAAACTGAAAATACA 59.070 29.630 0.00 0.00 33.03 2.29
204 205 8.723311 CAATTCATGCCAAAACTGAAAATACAT 58.277 29.630 0.00 0.00 33.03 2.29
205 206 8.851541 ATTCATGCCAAAACTGAAAATACATT 57.148 26.923 0.00 0.00 33.03 2.71
206 207 8.674263 TTCATGCCAAAACTGAAAATACATTT 57.326 26.923 0.00 0.00 0.00 2.32
207 208 8.309163 TCATGCCAAAACTGAAAATACATTTC 57.691 30.769 0.00 0.00 46.30 2.17
208 209 8.149647 TCATGCCAAAACTGAAAATACATTTCT 58.850 29.630 2.98 0.00 46.27 2.52
209 210 8.776470 CATGCCAAAACTGAAAATACATTTCTT 58.224 29.630 2.98 0.00 46.27 2.52
210 211 8.729805 TGCCAAAACTGAAAATACATTTCTTT 57.270 26.923 2.98 0.00 46.27 2.52
211 212 9.823647 TGCCAAAACTGAAAATACATTTCTTTA 57.176 25.926 2.98 0.00 46.27 1.85
218 219 9.802039 ACTGAAAATACATTTCTTTACTACCCA 57.198 29.630 2.98 0.00 46.27 4.51
221 222 9.569167 GAAAATACATTTCTTTACTACCCAAGC 57.431 33.333 0.00 0.00 43.40 4.01
222 223 8.644374 AAATACATTTCTTTACTACCCAAGCA 57.356 30.769 0.00 0.00 0.00 3.91
223 224 8.823220 AATACATTTCTTTACTACCCAAGCAT 57.177 30.769 0.00 0.00 0.00 3.79
224 225 9.914834 AATACATTTCTTTACTACCCAAGCATA 57.085 29.630 0.00 0.00 0.00 3.14
225 226 7.625828 ACATTTCTTTACTACCCAAGCATAC 57.374 36.000 0.00 0.00 0.00 2.39
226 227 6.602009 ACATTTCTTTACTACCCAAGCATACC 59.398 38.462 0.00 0.00 0.00 2.73
227 228 4.765813 TCTTTACTACCCAAGCATACCC 57.234 45.455 0.00 0.00 0.00 3.69
228 229 4.368067 TCTTTACTACCCAAGCATACCCT 58.632 43.478 0.00 0.00 0.00 4.34
229 230 5.531198 TCTTTACTACCCAAGCATACCCTA 58.469 41.667 0.00 0.00 0.00 3.53
230 231 5.364735 TCTTTACTACCCAAGCATACCCTAC 59.635 44.000 0.00 0.00 0.00 3.18
231 232 3.416414 ACTACCCAAGCATACCCTACT 57.584 47.619 0.00 0.00 0.00 2.57
232 233 4.547886 ACTACCCAAGCATACCCTACTA 57.452 45.455 0.00 0.00 0.00 1.82
233 234 4.221530 ACTACCCAAGCATACCCTACTAC 58.778 47.826 0.00 0.00 0.00 2.73
234 235 3.416414 ACCCAAGCATACCCTACTACT 57.584 47.619 0.00 0.00 0.00 2.57
235 236 4.547886 ACCCAAGCATACCCTACTACTA 57.452 45.455 0.00 0.00 0.00 1.82
236 237 4.221530 ACCCAAGCATACCCTACTACTAC 58.778 47.826 0.00 0.00 0.00 2.73
237 238 4.078747 ACCCAAGCATACCCTACTACTACT 60.079 45.833 0.00 0.00 0.00 2.57
238 239 5.135020 ACCCAAGCATACCCTACTACTACTA 59.865 44.000 0.00 0.00 0.00 1.82
239 240 5.476254 CCCAAGCATACCCTACTACTACTAC 59.524 48.000 0.00 0.00 0.00 2.73
240 241 6.305411 CCAAGCATACCCTACTACTACTACT 58.695 44.000 0.00 0.00 0.00 2.57
241 242 7.456725 CCAAGCATACCCTACTACTACTACTA 58.543 42.308 0.00 0.00 0.00 1.82
242 243 7.390162 CCAAGCATACCCTACTACTACTACTAC 59.610 44.444 0.00 0.00 0.00 2.73
243 244 7.870426 AGCATACCCTACTACTACTACTACT 57.130 40.000 0.00 0.00 0.00 2.57
244 245 8.964533 AGCATACCCTACTACTACTACTACTA 57.035 38.462 0.00 0.00 0.00 1.82
245 246 8.811994 AGCATACCCTACTACTACTACTACTAC 58.188 40.741 0.00 0.00 0.00 2.73
246 247 8.811994 GCATACCCTACTACTACTACTACTACT 58.188 40.741 0.00 0.00 0.00 2.57
336 337 7.094463 GGCAAAGAACCATCTTGATCCATATAG 60.094 40.741 0.00 0.00 45.19 1.31
351 352 4.408921 TCCATATAGACTTCCCAACCACAG 59.591 45.833 0.00 0.00 0.00 3.66
355 356 0.321653 GACTTCCCAACCACAGCGAT 60.322 55.000 0.00 0.00 0.00 4.58
431 433 9.169468 GTATTAAATGCTTAATCAACATCCGTG 57.831 33.333 0.00 0.00 38.44 4.94
433 435 2.431454 TGCTTAATCAACATCCGTGCA 58.569 42.857 0.00 0.00 0.00 4.57
434 436 2.816672 TGCTTAATCAACATCCGTGCAA 59.183 40.909 0.00 0.00 0.00 4.08
435 437 3.254411 TGCTTAATCAACATCCGTGCAAA 59.746 39.130 0.00 0.00 0.00 3.68
436 438 4.233789 GCTTAATCAACATCCGTGCAAAA 58.766 39.130 0.00 0.00 0.00 2.44
529 542 5.416952 CAGGACAATGGGGAATATATTGCTC 59.583 44.000 15.55 12.82 35.71 4.26
551 564 5.737860 TCTGAAGAAGCTTAATCTCATGCA 58.262 37.500 0.00 0.00 0.00 3.96
655 875 5.390613 GTTACAGCCATCATACAACACAAC 58.609 41.667 0.00 0.00 0.00 3.32
726 947 9.187455 GAAAGATCTCTATGTTCCGAATACTTC 57.813 37.037 0.00 0.00 0.00 3.01
891 1123 3.402110 TCTTGTCTGGCACACATGTTAG 58.598 45.455 0.00 0.00 33.41 2.34
1180 1423 1.284982 GCAGAGTATACATGCCGCCG 61.285 60.000 17.77 0.00 33.81 6.46
1204 1447 6.018588 CGGAATACATCAGTAAACGGCAAATA 60.019 38.462 0.00 0.00 33.13 1.40
1377 1660 8.370266 TCACTAATATTAGGTTGTACCACACT 57.630 34.615 23.24 0.00 41.95 3.55
1407 1691 4.389890 TGCATGCCAAGGAATTATGTTC 57.610 40.909 16.68 0.00 0.00 3.18
1425 1709 8.621532 TTATGTTCCAATTCTGCAGGTATATC 57.378 34.615 15.13 0.00 0.00 1.63
1435 1719 3.754965 TGCAGGTATATCAATTCTGGGC 58.245 45.455 0.00 0.00 0.00 5.36
1778 2370 9.776158 CGTTAACTACAAAAATAATGTGCCATA 57.224 29.630 3.71 0.00 32.27 2.74
1933 2538 7.171337 ACACAAAAATATCGTACGGTTAGTTGT 59.829 33.333 16.52 15.01 0.00 3.32
2168 2832 5.011125 ACTCATCCTTGTATCCATAGTTCCG 59.989 44.000 0.00 0.00 0.00 4.30
2198 2862 1.748732 TCATGGTTGGGTTAGGTGGA 58.251 50.000 0.00 0.00 0.00 4.02
2207 2873 2.292918 TGGGTTAGGTGGAGAGTAGCAT 60.293 50.000 0.00 0.00 0.00 3.79
2719 3555 5.188434 CCACCAGAATACATCAACAGACAT 58.812 41.667 0.00 0.00 0.00 3.06
2791 3627 1.681229 TAATGGCAGGAAAGGAGGGT 58.319 50.000 0.00 0.00 0.00 4.34
2809 3645 5.061721 AGGGTTACTTCAGTTTTCCACAT 57.938 39.130 0.00 0.00 0.00 3.21
2927 3780 6.395780 TCCCCTCTTTTGGTGTTATTATGA 57.604 37.500 0.00 0.00 0.00 2.15
3039 4428 5.446143 AAATAGCGTTGAAATGTGTGGAA 57.554 34.783 0.00 0.00 0.00 3.53
3150 4539 1.414181 CATATTCTCTGCTCCCACGGT 59.586 52.381 0.00 0.00 0.00 4.83
3247 4656 2.159517 CGCTTGCACAGGTAGGAATTTC 60.160 50.000 0.00 0.00 0.00 2.17
3355 4766 1.148273 AGTGGGCGAACAAGCTGAA 59.852 52.632 0.00 0.00 37.29 3.02
3358 4769 0.537143 TGGGCGAACAAGCTGAATGT 60.537 50.000 0.00 0.00 37.29 2.71
3376 4787 7.202016 TGAATGTGTTGAAGACCTTGTTATC 57.798 36.000 0.00 0.00 0.00 1.75
3380 4791 6.533730 TGTGTTGAAGACCTTGTTATCATCT 58.466 36.000 0.00 0.00 0.00 2.90
3387 4798 7.397476 TGAAGACCTTGTTATCATCTACTCACT 59.603 37.037 0.00 0.00 0.00 3.41
3388 4799 7.726033 AGACCTTGTTATCATCTACTCACTT 57.274 36.000 0.00 0.00 0.00 3.16
3389 4800 7.777095 AGACCTTGTTATCATCTACTCACTTC 58.223 38.462 0.00 0.00 0.00 3.01
3390 4801 7.397476 AGACCTTGTTATCATCTACTCACTTCA 59.603 37.037 0.00 0.00 0.00 3.02
3391 4802 7.907389 ACCTTGTTATCATCTACTCACTTCAA 58.093 34.615 0.00 0.00 0.00 2.69
3392 4803 8.037758 ACCTTGTTATCATCTACTCACTTCAAG 58.962 37.037 0.00 0.00 0.00 3.02
3405 4816 7.823745 ACTCACTTCAAGTTCAAATATTGGT 57.176 32.000 0.00 0.00 0.00 3.67
3424 4835 1.940613 GTTGTTCCTCTTTGTCGCAGT 59.059 47.619 0.00 0.00 0.00 4.40
3466 4877 2.007608 GGCGAAATTCTGTCCAGGTAC 58.992 52.381 0.00 0.00 0.00 3.34
3481 4896 1.762957 AGGTACTGGCGCATTGTAGAT 59.237 47.619 10.83 0.00 37.18 1.98
3489 4904 2.355756 GGCGCATTGTAGATGAACATGT 59.644 45.455 10.83 0.00 0.00 3.21
3492 4907 4.858692 GCGCATTGTAGATGAACATGTTTT 59.141 37.500 13.36 3.50 0.00 2.43
3493 4908 5.345741 GCGCATTGTAGATGAACATGTTTTT 59.654 36.000 13.36 3.11 0.00 1.94
3564 4979 7.042456 CGAGTCTGTTGGATTCTATTAATGTGG 60.042 40.741 0.00 0.00 0.00 4.17
3565 4980 6.543831 AGTCTGTTGGATTCTATTAATGTGGC 59.456 38.462 0.00 0.00 0.00 5.01
3571 4986 9.034544 GTTGGATTCTATTAATGTGGCAAAATC 57.965 33.333 0.00 0.00 0.00 2.17
3614 5029 1.106285 GGCAAGGCATTACAAGGAGG 58.894 55.000 0.00 0.00 0.00 4.30
3624 5039 4.571919 CATTACAAGGAGGACGTAAACCA 58.428 43.478 0.00 0.00 0.00 3.67
3627 5042 2.171027 ACAAGGAGGACGTAAACCACAA 59.829 45.455 0.00 0.00 0.00 3.33
3631 5046 1.869132 GAGGACGTAAACCACAACACC 59.131 52.381 0.00 0.00 0.00 4.16
3633 5048 1.600485 GGACGTAAACCACAACACCTG 59.400 52.381 0.00 0.00 0.00 4.00
3652 5067 1.839354 TGCTGGATGCCTTCATCTACA 59.161 47.619 5.41 0.11 46.41 2.74
3657 5072 0.541392 ATGCCTTCATCTACACGCCA 59.459 50.000 0.00 0.00 0.00 5.69
3658 5073 0.323302 TGCCTTCATCTACACGCCAA 59.677 50.000 0.00 0.00 0.00 4.52
3688 5103 4.698575 GGTAGCAGGGAGAATAGTTTCTG 58.301 47.826 0.00 0.00 42.34 3.02
3692 5107 4.777896 AGCAGGGAGAATAGTTTCTGTACA 59.222 41.667 0.00 0.00 42.34 2.90
3694 5109 5.582665 GCAGGGAGAATAGTTTCTGTACAAG 59.417 44.000 0.00 0.00 42.34 3.16
3695 5110 6.574465 GCAGGGAGAATAGTTTCTGTACAAGA 60.574 42.308 0.00 0.00 42.34 3.02
3697 5112 6.726764 AGGGAGAATAGTTTCTGTACAAGAGT 59.273 38.462 0.00 0.00 42.34 3.24
3744 5159 7.495055 AGTTTCTTCTGTCAATCAAGCAAATT 58.505 30.769 0.00 0.00 0.00 1.82
3757 5172 2.652941 GCAAATTGCGATCTTGGGAA 57.347 45.000 0.90 0.00 31.71 3.97
3758 5173 3.169355 GCAAATTGCGATCTTGGGAAT 57.831 42.857 0.90 0.00 31.71 3.01
3759 5174 3.118542 GCAAATTGCGATCTTGGGAATC 58.881 45.455 0.90 0.00 31.71 2.52
3772 5188 1.273838 TGGGAATCAGAGTGCTAGGGT 60.274 52.381 0.00 0.00 0.00 4.34
3773 5189 2.023404 TGGGAATCAGAGTGCTAGGGTA 60.023 50.000 0.00 0.00 0.00 3.69
3774 5190 3.243724 GGGAATCAGAGTGCTAGGGTAT 58.756 50.000 0.00 0.00 0.00 2.73
3775 5191 3.259625 GGGAATCAGAGTGCTAGGGTATC 59.740 52.174 0.00 0.00 0.00 2.24
3776 5192 4.156477 GGAATCAGAGTGCTAGGGTATCT 58.844 47.826 0.00 0.00 0.00 1.98
3777 5193 5.326069 GGAATCAGAGTGCTAGGGTATCTA 58.674 45.833 0.00 0.00 0.00 1.98
3778 5194 5.955355 GGAATCAGAGTGCTAGGGTATCTAT 59.045 44.000 0.00 0.00 0.00 1.98
3779 5195 7.120051 GGAATCAGAGTGCTAGGGTATCTATA 58.880 42.308 0.00 0.00 0.00 1.31
3780 5196 7.782644 GGAATCAGAGTGCTAGGGTATCTATAT 59.217 40.741 0.00 0.00 0.00 0.86
3781 5197 9.854668 GAATCAGAGTGCTAGGGTATCTATATA 57.145 37.037 0.00 0.00 0.00 0.86
3783 5199 9.806448 ATCAGAGTGCTAGGGTATCTATATATG 57.194 37.037 0.00 0.00 0.00 1.78
3784 5200 8.782927 TCAGAGTGCTAGGGTATCTATATATGT 58.217 37.037 0.00 0.00 0.00 2.29
3785 5201 9.415008 CAGAGTGCTAGGGTATCTATATATGTT 57.585 37.037 0.00 0.00 0.00 2.71
3786 5202 9.998752 AGAGTGCTAGGGTATCTATATATGTTT 57.001 33.333 0.00 0.00 0.00 2.83
3788 5204 9.203163 AGTGCTAGGGTATCTATATATGTTTCC 57.797 37.037 0.00 0.00 0.00 3.13
3789 5205 8.978472 GTGCTAGGGTATCTATATATGTTTCCA 58.022 37.037 0.00 0.00 0.00 3.53
3790 5206 9.555411 TGCTAGGGTATCTATATATGTTTCCAA 57.445 33.333 0.00 0.00 0.00 3.53
3794 5210 9.740710 AGGGTATCTATATATGTTTCCAAAAGC 57.259 33.333 0.00 0.00 0.00 3.51
3795 5211 9.740710 GGGTATCTATATATGTTTCCAAAAGCT 57.259 33.333 0.00 0.00 0.00 3.74
3804 5220 4.432712 TGTTTCCAAAAGCTCAAGAAAGC 58.567 39.130 0.00 0.00 42.82 3.51
3805 5221 4.081752 TGTTTCCAAAAGCTCAAGAAAGCA 60.082 37.500 0.00 0.00 45.00 3.91
3806 5222 3.715628 TCCAAAAGCTCAAGAAAGCAC 57.284 42.857 0.00 0.00 45.00 4.40
3807 5223 3.290710 TCCAAAAGCTCAAGAAAGCACT 58.709 40.909 0.00 0.00 45.00 4.40
3808 5224 3.316308 TCCAAAAGCTCAAGAAAGCACTC 59.684 43.478 0.00 0.00 45.00 3.51
3809 5225 3.294943 CAAAAGCTCAAGAAAGCACTCG 58.705 45.455 0.00 0.00 45.00 4.18
3810 5226 2.533266 AAGCTCAAGAAAGCACTCGA 57.467 45.000 0.00 0.00 45.00 4.04
3811 5227 2.758736 AGCTCAAGAAAGCACTCGAT 57.241 45.000 0.00 0.00 45.00 3.59
3812 5228 2.615869 AGCTCAAGAAAGCACTCGATC 58.384 47.619 0.00 0.00 45.00 3.69
3813 5229 2.028658 AGCTCAAGAAAGCACTCGATCA 60.029 45.455 0.00 0.00 45.00 2.92
3814 5230 2.348059 GCTCAAGAAAGCACTCGATCAG 59.652 50.000 0.00 0.00 42.05 2.90
3815 5231 3.583806 CTCAAGAAAGCACTCGATCAGT 58.416 45.455 0.00 0.00 34.67 3.41
3821 5237 2.887568 CACTCGATCAGTGCGGCC 60.888 66.667 10.89 0.00 46.30 6.13
3822 5238 3.381983 ACTCGATCAGTGCGGCCA 61.382 61.111 2.24 0.00 32.26 5.36
3823 5239 2.107750 CTCGATCAGTGCGGCCAT 59.892 61.111 2.24 0.00 0.00 4.40
3824 5240 2.202919 TCGATCAGTGCGGCCATG 60.203 61.111 2.24 0.00 0.00 3.66
3825 5241 3.945434 CGATCAGTGCGGCCATGC 61.945 66.667 2.24 0.00 0.00 4.06
3826 5242 3.589881 GATCAGTGCGGCCATGCC 61.590 66.667 2.24 0.00 46.75 4.40
3838 5254 2.129823 GCCATGCCAATCATCTTTCG 57.870 50.000 0.00 0.00 31.79 3.46
3839 5255 1.866880 GCCATGCCAATCATCTTTCGC 60.867 52.381 0.00 0.00 31.79 4.70
3840 5256 1.269413 CCATGCCAATCATCTTTCGCC 60.269 52.381 0.00 0.00 31.79 5.54
3841 5257 1.406180 CATGCCAATCATCTTTCGCCA 59.594 47.619 0.00 0.00 31.79 5.69
3842 5258 0.810648 TGCCAATCATCTTTCGCCAC 59.189 50.000 0.00 0.00 0.00 5.01
3843 5259 1.098050 GCCAATCATCTTTCGCCACT 58.902 50.000 0.00 0.00 0.00 4.00
3844 5260 2.288666 GCCAATCATCTTTCGCCACTA 58.711 47.619 0.00 0.00 0.00 2.74
3845 5261 2.289002 GCCAATCATCTTTCGCCACTAG 59.711 50.000 0.00 0.00 0.00 2.57
3846 5262 2.874701 CCAATCATCTTTCGCCACTAGG 59.125 50.000 0.00 0.00 38.23 3.02
3847 5263 3.432186 CCAATCATCTTTCGCCACTAGGA 60.432 47.826 0.00 0.00 36.89 2.94
3848 5264 3.742433 ATCATCTTTCGCCACTAGGAG 57.258 47.619 0.00 0.00 36.89 3.69
3849 5265 1.137086 TCATCTTTCGCCACTAGGAGC 59.863 52.381 0.00 0.00 36.89 4.70
3850 5266 0.466124 ATCTTTCGCCACTAGGAGCC 59.534 55.000 0.00 0.00 36.89 4.70
3851 5267 1.153349 CTTTCGCCACTAGGAGCCC 60.153 63.158 0.00 0.00 36.89 5.19
3852 5268 1.612442 TTTCGCCACTAGGAGCCCT 60.612 57.895 0.00 0.00 36.89 5.19
3853 5269 1.899437 TTTCGCCACTAGGAGCCCTG 61.899 60.000 4.16 0.00 36.89 4.45
3854 5270 3.077556 CGCCACTAGGAGCCCTGT 61.078 66.667 4.16 0.00 36.89 4.00
3855 5271 2.660064 CGCCACTAGGAGCCCTGTT 61.660 63.158 4.16 0.00 36.89 3.16
3856 5272 1.685820 GCCACTAGGAGCCCTGTTT 59.314 57.895 4.16 0.00 36.89 2.83
3857 5273 0.909623 GCCACTAGGAGCCCTGTTTA 59.090 55.000 4.16 0.00 36.89 2.01
3858 5274 1.280998 GCCACTAGGAGCCCTGTTTAA 59.719 52.381 4.16 0.00 36.89 1.52
3859 5275 2.290705 GCCACTAGGAGCCCTGTTTAAA 60.291 50.000 4.16 0.00 36.89 1.52
3860 5276 3.610911 CCACTAGGAGCCCTGTTTAAAG 58.389 50.000 4.16 0.00 36.89 1.85
3861 5277 3.263425 CCACTAGGAGCCCTGTTTAAAGA 59.737 47.826 4.16 0.00 36.89 2.52
3862 5278 4.263331 CCACTAGGAGCCCTGTTTAAAGAA 60.263 45.833 4.16 0.00 36.89 2.52
3863 5279 5.313712 CACTAGGAGCCCTGTTTAAAGAAA 58.686 41.667 4.16 0.00 34.61 2.52
3864 5280 5.181433 CACTAGGAGCCCTGTTTAAAGAAAC 59.819 44.000 4.16 0.00 44.48 2.78
3865 5281 4.455070 AGGAGCCCTGTTTAAAGAAACT 57.545 40.909 2.56 0.00 44.52 2.66
3866 5282 5.578157 AGGAGCCCTGTTTAAAGAAACTA 57.422 39.130 2.56 0.00 44.52 2.24
3867 5283 5.948842 AGGAGCCCTGTTTAAAGAAACTAA 58.051 37.500 2.56 0.00 44.52 2.24
3868 5284 6.370453 AGGAGCCCTGTTTAAAGAAACTAAA 58.630 36.000 2.56 0.00 44.52 1.85
3869 5285 6.264744 AGGAGCCCTGTTTAAAGAAACTAAAC 59.735 38.462 2.56 0.00 44.52 2.01
3870 5286 6.401047 AGCCCTGTTTAAAGAAACTAAACC 57.599 37.500 2.56 0.00 44.52 3.27
3871 5287 6.134055 AGCCCTGTTTAAAGAAACTAAACCT 58.866 36.000 2.56 0.00 44.52 3.50
3872 5288 6.610020 AGCCCTGTTTAAAGAAACTAAACCTT 59.390 34.615 2.56 0.00 44.52 3.50
3873 5289 7.125204 AGCCCTGTTTAAAGAAACTAAACCTTT 59.875 33.333 2.56 0.00 44.52 3.11
3874 5290 7.223971 GCCCTGTTTAAAGAAACTAAACCTTTG 59.776 37.037 0.00 0.00 44.52 2.77
3875 5291 7.223971 CCCTGTTTAAAGAAACTAAACCTTTGC 59.776 37.037 0.00 0.00 44.52 3.68
3876 5292 7.043656 CCTGTTTAAAGAAACTAAACCTTTGCG 60.044 37.037 0.00 0.00 44.52 4.85
3877 5293 6.253942 TGTTTAAAGAAACTAAACCTTTGCGC 59.746 34.615 0.00 0.00 44.52 6.09
3878 5294 4.379339 AAAGAAACTAAACCTTTGCGCA 57.621 36.364 5.66 5.66 0.00 6.09
3879 5295 3.626028 AGAAACTAAACCTTTGCGCAG 57.374 42.857 11.31 0.87 0.00 5.18
3912 5328 7.181143 GCATATGGCAATGTAAAATTTCCTG 57.819 36.000 4.56 0.00 43.97 3.86
3913 5329 6.203338 GCATATGGCAATGTAAAATTTCCTGG 59.797 38.462 4.56 0.00 43.97 4.45
3914 5330 3.936564 TGGCAATGTAAAATTTCCTGGC 58.063 40.909 0.00 0.00 0.00 4.85
3915 5331 3.270027 GGCAATGTAAAATTTCCTGGCC 58.730 45.455 0.00 0.00 0.00 5.36
3916 5332 3.307339 GGCAATGTAAAATTTCCTGGCCA 60.307 43.478 4.71 4.71 37.62 5.36
3917 5333 4.516323 GCAATGTAAAATTTCCTGGCCAT 58.484 39.130 5.51 0.00 0.00 4.40
3918 5334 4.571984 GCAATGTAAAATTTCCTGGCCATC 59.428 41.667 5.51 0.00 0.00 3.51
3919 5335 5.627503 GCAATGTAAAATTTCCTGGCCATCT 60.628 40.000 5.51 0.00 0.00 2.90
3920 5336 5.603170 ATGTAAAATTTCCTGGCCATCTG 57.397 39.130 5.51 0.00 0.00 2.90
3921 5337 3.195396 TGTAAAATTTCCTGGCCATCTGC 59.805 43.478 5.51 0.00 40.16 4.26
3930 5346 3.190878 GCCATCTGCCTCGGTTTG 58.809 61.111 0.00 0.00 0.00 2.93
3931 5347 1.675641 GCCATCTGCCTCGGTTTGT 60.676 57.895 0.00 0.00 0.00 2.83
3932 5348 0.392461 GCCATCTGCCTCGGTTTGTA 60.392 55.000 0.00 0.00 0.00 2.41
3933 5349 1.369625 CCATCTGCCTCGGTTTGTAC 58.630 55.000 0.00 0.00 0.00 2.90
3934 5350 1.066143 CCATCTGCCTCGGTTTGTACT 60.066 52.381 0.00 0.00 0.00 2.73
3935 5351 2.615493 CCATCTGCCTCGGTTTGTACTT 60.615 50.000 0.00 0.00 0.00 2.24
3936 5352 2.922740 TCTGCCTCGGTTTGTACTTT 57.077 45.000 0.00 0.00 0.00 2.66
3937 5353 2.489971 TCTGCCTCGGTTTGTACTTTG 58.510 47.619 0.00 0.00 0.00 2.77
3938 5354 2.158871 TCTGCCTCGGTTTGTACTTTGT 60.159 45.455 0.00 0.00 0.00 2.83
3939 5355 3.069872 TCTGCCTCGGTTTGTACTTTGTA 59.930 43.478 0.00 0.00 0.00 2.41
3940 5356 4.000988 CTGCCTCGGTTTGTACTTTGTAT 58.999 43.478 0.00 0.00 0.00 2.29
3941 5357 5.047164 TCTGCCTCGGTTTGTACTTTGTATA 60.047 40.000 0.00 0.00 0.00 1.47
3942 5358 5.172934 TGCCTCGGTTTGTACTTTGTATAG 58.827 41.667 0.00 0.00 0.00 1.31
3943 5359 5.047164 TGCCTCGGTTTGTACTTTGTATAGA 60.047 40.000 0.00 0.00 0.00 1.98
3944 5360 5.519206 GCCTCGGTTTGTACTTTGTATAGAG 59.481 44.000 0.00 0.00 0.00 2.43
3945 5361 5.519206 CCTCGGTTTGTACTTTGTATAGAGC 59.481 44.000 0.00 0.00 0.00 4.09
3946 5362 5.413499 TCGGTTTGTACTTTGTATAGAGCC 58.587 41.667 0.00 0.00 0.00 4.70
3947 5363 5.186409 TCGGTTTGTACTTTGTATAGAGCCT 59.814 40.000 0.00 0.00 0.00 4.58
3948 5364 5.291128 CGGTTTGTACTTTGTATAGAGCCTG 59.709 44.000 0.00 0.00 0.00 4.85
3949 5365 6.171213 GGTTTGTACTTTGTATAGAGCCTGT 58.829 40.000 0.00 0.00 0.00 4.00
3950 5366 6.092259 GGTTTGTACTTTGTATAGAGCCTGTG 59.908 42.308 0.00 0.00 0.00 3.66
3951 5367 5.995565 TGTACTTTGTATAGAGCCTGTGT 57.004 39.130 0.00 0.00 0.00 3.72
3952 5368 5.720202 TGTACTTTGTATAGAGCCTGTGTG 58.280 41.667 0.00 0.00 0.00 3.82
3953 5369 3.600388 ACTTTGTATAGAGCCTGTGTGC 58.400 45.455 0.00 0.00 0.00 4.57
3954 5370 3.261897 ACTTTGTATAGAGCCTGTGTGCT 59.738 43.478 0.00 0.00 46.37 4.40
3955 5371 2.967599 TGTATAGAGCCTGTGTGCTG 57.032 50.000 0.00 0.00 42.95 4.41
3956 5372 2.456577 TGTATAGAGCCTGTGTGCTGA 58.543 47.619 0.00 0.00 42.95 4.26
3957 5373 2.166459 TGTATAGAGCCTGTGTGCTGAC 59.834 50.000 0.00 0.00 42.95 3.51
3958 5374 0.174389 ATAGAGCCTGTGTGCTGACG 59.826 55.000 0.00 0.00 42.95 4.35
3959 5375 0.893727 TAGAGCCTGTGTGCTGACGA 60.894 55.000 0.00 0.00 42.95 4.20
3960 5376 1.079543 GAGCCTGTGTGCTGACGAT 60.080 57.895 0.00 0.00 42.95 3.73
3961 5377 0.671781 GAGCCTGTGTGCTGACGATT 60.672 55.000 0.00 0.00 42.95 3.34
3962 5378 0.250467 AGCCTGTGTGCTGACGATTT 60.250 50.000 0.00 0.00 40.90 2.17
3963 5379 0.110056 GCCTGTGTGCTGACGATTTG 60.110 55.000 0.00 0.00 0.00 2.32
3964 5380 1.229428 CCTGTGTGCTGACGATTTGT 58.771 50.000 0.00 0.00 0.00 2.83
3972 5388 4.278956 GACGATTTGTCCACCGCT 57.721 55.556 0.00 0.00 42.04 5.52
3973 5389 3.429043 GACGATTTGTCCACCGCTA 57.571 52.632 0.00 0.00 42.04 4.26
3974 5390 1.717194 GACGATTTGTCCACCGCTAA 58.283 50.000 0.00 0.00 42.04 3.09
3975 5391 2.277084 GACGATTTGTCCACCGCTAAT 58.723 47.619 0.00 0.00 42.04 1.73
3976 5392 2.006888 ACGATTTGTCCACCGCTAATG 58.993 47.619 0.00 0.00 0.00 1.90
3977 5393 2.006888 CGATTTGTCCACCGCTAATGT 58.993 47.619 0.00 0.00 0.00 2.71
3978 5394 2.418628 CGATTTGTCCACCGCTAATGTT 59.581 45.455 0.00 0.00 0.00 2.71
3979 5395 3.119990 CGATTTGTCCACCGCTAATGTTT 60.120 43.478 0.00 0.00 0.00 2.83
3980 5396 4.093703 CGATTTGTCCACCGCTAATGTTTA 59.906 41.667 0.00 0.00 0.00 2.01
3981 5397 5.391097 CGATTTGTCCACCGCTAATGTTTAA 60.391 40.000 0.00 0.00 0.00 1.52
3982 5398 5.968528 TTTGTCCACCGCTAATGTTTAAT 57.031 34.783 0.00 0.00 0.00 1.40
3983 5399 4.955925 TGTCCACCGCTAATGTTTAATG 57.044 40.909 0.00 0.00 0.00 1.90
3984 5400 3.692101 TGTCCACCGCTAATGTTTAATGG 59.308 43.478 0.00 0.00 0.00 3.16
4250 5666 2.809446 TCTGTAAGATGATCCGTTGCG 58.191 47.619 0.00 0.00 38.67 4.85
4300 5716 4.595762 AAGCATTGAAAGAGTGTGCATT 57.404 36.364 0.00 0.00 38.23 3.56
4304 5720 6.514947 AGCATTGAAAGAGTGTGCATTAAAA 58.485 32.000 0.00 0.00 38.23 1.52
4305 5721 7.156673 AGCATTGAAAGAGTGTGCATTAAAAT 58.843 30.769 0.00 0.00 38.23 1.82
4537 5953 6.927294 ACAACTTGCTTATATTGAGTAGGC 57.073 37.500 0.00 0.00 0.00 3.93
4545 5961 5.336849 GCTTATATTGAGTAGGCGACCAGAT 60.337 44.000 0.00 0.00 0.00 2.90
4546 5962 6.127703 GCTTATATTGAGTAGGCGACCAGATA 60.128 42.308 0.00 0.00 0.00 1.98
4549 5965 2.730382 TGAGTAGGCGACCAGATACAA 58.270 47.619 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.406828 CATCAAATTATCAGCATTAGGTTCATG 57.593 33.333 0.00 0.00 0.00 3.07
3 4 6.865205 GCCATCAAATTATCAGCATTAGGTTC 59.135 38.462 0.00 0.00 0.00 3.62
4 5 6.324512 TGCCATCAAATTATCAGCATTAGGTT 59.675 34.615 0.00 0.00 0.00 3.50
10 11 8.372459 ACATTTATGCCATCAAATTATCAGCAT 58.628 29.630 0.00 0.00 41.89 3.79
11 12 7.728148 ACATTTATGCCATCAAATTATCAGCA 58.272 30.769 0.00 0.00 0.00 4.41
12 13 8.492748 CAACATTTATGCCATCAAATTATCAGC 58.507 33.333 0.00 0.00 0.00 4.26
13 14 8.984764 CCAACATTTATGCCATCAAATTATCAG 58.015 33.333 0.00 0.00 0.00 2.90
14 15 8.484575 ACCAACATTTATGCCATCAAATTATCA 58.515 29.630 0.00 0.00 0.00 2.15
15 16 8.767085 CACCAACATTTATGCCATCAAATTATC 58.233 33.333 0.00 0.00 0.00 1.75
16 17 8.266473 ACACCAACATTTATGCCATCAAATTAT 58.734 29.630 0.00 0.00 0.00 1.28
17 18 7.619050 ACACCAACATTTATGCCATCAAATTA 58.381 30.769 0.00 0.00 0.00 1.40
18 19 6.474630 ACACCAACATTTATGCCATCAAATT 58.525 32.000 0.00 0.00 0.00 1.82
19 20 6.052405 ACACCAACATTTATGCCATCAAAT 57.948 33.333 0.00 0.00 0.00 2.32
20 21 5.480642 ACACCAACATTTATGCCATCAAA 57.519 34.783 0.00 0.00 0.00 2.69
21 22 6.788598 ATACACCAACATTTATGCCATCAA 57.211 33.333 0.00 0.00 0.00 2.57
22 23 7.888250 TTATACACCAACATTTATGCCATCA 57.112 32.000 0.00 0.00 0.00 3.07
23 24 9.195411 CAATTATACACCAACATTTATGCCATC 57.805 33.333 0.00 0.00 0.00 3.51
24 25 8.703743 ACAATTATACACCAACATTTATGCCAT 58.296 29.630 0.00 0.00 0.00 4.40
25 26 8.072321 ACAATTATACACCAACATTTATGCCA 57.928 30.769 0.00 0.00 0.00 4.92
71 72 9.150348 CCAACTTTGTTGAAAAGTCAAACTTAT 57.850 29.630 11.47 0.00 45.29 1.73
72 73 8.361139 TCCAACTTTGTTGAAAAGTCAAACTTA 58.639 29.630 11.47 0.00 45.29 2.24
73 74 7.213678 TCCAACTTTGTTGAAAAGTCAAACTT 58.786 30.769 11.47 0.00 45.29 2.66
74 75 6.754193 TCCAACTTTGTTGAAAAGTCAAACT 58.246 32.000 11.47 0.00 45.29 2.66
75 76 7.414814 TTCCAACTTTGTTGAAAAGTCAAAC 57.585 32.000 11.47 0.00 45.29 2.93
76 77 6.147000 GCTTCCAACTTTGTTGAAAAGTCAAA 59.853 34.615 11.47 0.00 45.29 2.69
77 78 5.637387 GCTTCCAACTTTGTTGAAAAGTCAA 59.363 36.000 11.47 0.00 41.57 3.18
78 79 5.167845 GCTTCCAACTTTGTTGAAAAGTCA 58.832 37.500 11.47 0.00 39.36 3.41
79 80 5.062183 GTGCTTCCAACTTTGTTGAAAAGTC 59.938 40.000 11.47 10.33 39.36 3.01
80 81 4.929211 GTGCTTCCAACTTTGTTGAAAAGT 59.071 37.500 11.47 0.00 41.82 2.66
81 82 4.928615 TGTGCTTCCAACTTTGTTGAAAAG 59.071 37.500 11.47 13.60 0.00 2.27
82 83 4.688413 GTGTGCTTCCAACTTTGTTGAAAA 59.312 37.500 11.47 5.40 0.00 2.29
83 84 4.021544 AGTGTGCTTCCAACTTTGTTGAAA 60.022 37.500 11.47 0.00 0.00 2.69
84 85 3.509575 AGTGTGCTTCCAACTTTGTTGAA 59.490 39.130 11.47 4.30 0.00 2.69
85 86 3.088532 AGTGTGCTTCCAACTTTGTTGA 58.911 40.909 11.47 0.00 0.00 3.18
86 87 3.508744 AGTGTGCTTCCAACTTTGTTG 57.491 42.857 3.69 3.69 0.00 3.33
87 88 4.535526 AAAGTGTGCTTCCAACTTTGTT 57.464 36.364 0.00 0.00 41.38 2.83
88 89 4.535526 AAAAGTGTGCTTCCAACTTTGT 57.464 36.364 1.15 0.00 41.93 2.83
107 108 3.516700 CCTACTCCCTCCGTCCTTAAAAA 59.483 47.826 0.00 0.00 0.00 1.94
108 109 3.102204 CCTACTCCCTCCGTCCTTAAAA 58.898 50.000 0.00 0.00 0.00 1.52
109 110 2.043526 ACCTACTCCCTCCGTCCTTAAA 59.956 50.000 0.00 0.00 0.00 1.52
110 111 1.642762 ACCTACTCCCTCCGTCCTTAA 59.357 52.381 0.00 0.00 0.00 1.85
111 112 1.302907 ACCTACTCCCTCCGTCCTTA 58.697 55.000 0.00 0.00 0.00 2.69
112 113 0.412640 AACCTACTCCCTCCGTCCTT 59.587 55.000 0.00 0.00 0.00 3.36
113 114 0.033306 GAACCTACTCCCTCCGTCCT 60.033 60.000 0.00 0.00 0.00 3.85
114 115 1.042003 GGAACCTACTCCCTCCGTCC 61.042 65.000 0.00 0.00 0.00 4.79
115 116 0.324091 TGGAACCTACTCCCTCCGTC 60.324 60.000 0.00 0.00 34.22 4.79
116 117 0.115745 TTGGAACCTACTCCCTCCGT 59.884 55.000 0.00 0.00 34.22 4.69
117 118 1.207329 CTTTGGAACCTACTCCCTCCG 59.793 57.143 0.00 0.00 34.22 4.63
118 119 1.560146 CCTTTGGAACCTACTCCCTCC 59.440 57.143 0.00 0.00 34.22 4.30
119 120 1.065345 GCCTTTGGAACCTACTCCCTC 60.065 57.143 0.00 0.00 34.22 4.30
120 121 0.992695 GCCTTTGGAACCTACTCCCT 59.007 55.000 0.00 0.00 34.22 4.20
121 122 0.034380 GGCCTTTGGAACCTACTCCC 60.034 60.000 0.00 0.00 34.22 4.30
122 123 0.696501 TGGCCTTTGGAACCTACTCC 59.303 55.000 3.32 0.00 35.88 3.85
123 124 2.579410 TTGGCCTTTGGAACCTACTC 57.421 50.000 3.32 0.00 0.00 2.59
124 125 3.542969 ATTTGGCCTTTGGAACCTACT 57.457 42.857 3.32 0.00 0.00 2.57
125 126 5.731957 TTTATTTGGCCTTTGGAACCTAC 57.268 39.130 3.32 0.00 0.00 3.18
126 127 6.742926 GCTTTTTATTTGGCCTTTGGAACCTA 60.743 38.462 3.32 0.00 0.00 3.08
127 128 5.620206 CTTTTTATTTGGCCTTTGGAACCT 58.380 37.500 3.32 0.00 0.00 3.50
128 129 4.215399 GCTTTTTATTTGGCCTTTGGAACC 59.785 41.667 3.32 0.00 0.00 3.62
129 130 4.215399 GGCTTTTTATTTGGCCTTTGGAAC 59.785 41.667 3.32 0.00 41.20 3.62
130 131 4.141390 TGGCTTTTTATTTGGCCTTTGGAA 60.141 37.500 3.32 0.00 44.36 3.53
131 132 3.392616 TGGCTTTTTATTTGGCCTTTGGA 59.607 39.130 3.32 0.00 44.36 3.53
132 133 3.749226 TGGCTTTTTATTTGGCCTTTGG 58.251 40.909 3.32 0.00 44.36 3.28
133 134 5.247862 AGATGGCTTTTTATTTGGCCTTTG 58.752 37.500 3.32 0.00 44.36 2.77
134 135 5.503634 AGATGGCTTTTTATTTGGCCTTT 57.496 34.783 3.32 0.00 44.36 3.11
135 136 6.619329 TTAGATGGCTTTTTATTTGGCCTT 57.381 33.333 3.32 0.00 44.36 4.35
136 137 6.813293 ATTAGATGGCTTTTTATTTGGCCT 57.187 33.333 3.32 0.00 44.36 5.19
137 138 8.421002 TCTAATTAGATGGCTTTTTATTTGGCC 58.579 33.333 11.24 0.00 44.31 5.36
138 139 9.987272 ATCTAATTAGATGGCTTTTTATTTGGC 57.013 29.630 24.13 0.00 41.28 4.52
167 168 9.638239 GTTTTGGCATGAATTGAAGTCTATTAA 57.362 29.630 0.00 0.00 0.00 1.40
168 169 9.023962 AGTTTTGGCATGAATTGAAGTCTATTA 57.976 29.630 0.00 0.00 0.00 0.98
169 170 7.816031 CAGTTTTGGCATGAATTGAAGTCTATT 59.184 33.333 0.00 0.00 0.00 1.73
170 171 7.177216 TCAGTTTTGGCATGAATTGAAGTCTAT 59.823 33.333 0.00 0.00 0.00 1.98
171 172 6.489700 TCAGTTTTGGCATGAATTGAAGTCTA 59.510 34.615 0.00 0.00 0.00 2.59
172 173 5.302568 TCAGTTTTGGCATGAATTGAAGTCT 59.697 36.000 0.00 0.00 0.00 3.24
173 174 5.531634 TCAGTTTTGGCATGAATTGAAGTC 58.468 37.500 0.00 0.00 0.00 3.01
174 175 5.534207 TCAGTTTTGGCATGAATTGAAGT 57.466 34.783 0.00 0.00 0.00 3.01
175 176 6.847956 TTTCAGTTTTGGCATGAATTGAAG 57.152 33.333 16.00 0.00 34.45 3.02
176 177 7.804843 ATTTTCAGTTTTGGCATGAATTGAA 57.195 28.000 13.98 13.98 33.26 2.69
177 178 7.930325 TGTATTTTCAGTTTTGGCATGAATTGA 59.070 29.630 0.00 4.16 33.26 2.57
178 179 8.085720 TGTATTTTCAGTTTTGGCATGAATTG 57.914 30.769 0.00 2.04 33.26 2.32
179 180 8.851541 ATGTATTTTCAGTTTTGGCATGAATT 57.148 26.923 0.00 0.00 33.26 2.17
180 181 8.851541 AATGTATTTTCAGTTTTGGCATGAAT 57.148 26.923 0.00 0.00 33.26 2.57
181 182 8.674263 AAATGTATTTTCAGTTTTGGCATGAA 57.326 26.923 0.00 0.00 0.00 2.57
182 183 8.149647 AGAAATGTATTTTCAGTTTTGGCATGA 58.850 29.630 0.00 0.00 45.19 3.07
183 184 8.314143 AGAAATGTATTTTCAGTTTTGGCATG 57.686 30.769 0.00 0.00 45.19 4.06
184 185 8.907222 AAGAAATGTATTTTCAGTTTTGGCAT 57.093 26.923 0.00 0.00 45.19 4.40
185 186 8.729805 AAAGAAATGTATTTTCAGTTTTGGCA 57.270 26.923 1.41 0.00 45.19 4.92
192 193 9.802039 TGGGTAGTAAAGAAATGTATTTTCAGT 57.198 29.630 1.41 0.00 45.19 3.41
195 196 9.569167 GCTTGGGTAGTAAAGAAATGTATTTTC 57.431 33.333 0.00 0.00 43.45 2.29
196 197 9.084533 TGCTTGGGTAGTAAAGAAATGTATTTT 57.915 29.630 0.00 0.00 0.00 1.82
197 198 8.644374 TGCTTGGGTAGTAAAGAAATGTATTT 57.356 30.769 0.00 0.00 0.00 1.40
198 199 8.823220 ATGCTTGGGTAGTAAAGAAATGTATT 57.177 30.769 0.00 0.00 0.00 1.89
199 200 9.338622 GTATGCTTGGGTAGTAAAGAAATGTAT 57.661 33.333 0.00 0.00 0.00 2.29
200 201 7.771826 GGTATGCTTGGGTAGTAAAGAAATGTA 59.228 37.037 0.00 0.00 0.00 2.29
201 202 6.602009 GGTATGCTTGGGTAGTAAAGAAATGT 59.398 38.462 0.00 0.00 0.00 2.71
202 203 6.039382 GGGTATGCTTGGGTAGTAAAGAAATG 59.961 42.308 0.00 0.00 0.00 2.32
203 204 6.069029 AGGGTATGCTTGGGTAGTAAAGAAAT 60.069 38.462 0.00 0.00 0.00 2.17
204 205 5.252164 AGGGTATGCTTGGGTAGTAAAGAAA 59.748 40.000 0.00 0.00 0.00 2.52
205 206 4.786454 AGGGTATGCTTGGGTAGTAAAGAA 59.214 41.667 0.00 0.00 0.00 2.52
206 207 4.368067 AGGGTATGCTTGGGTAGTAAAGA 58.632 43.478 0.00 0.00 0.00 2.52
207 208 4.772886 AGGGTATGCTTGGGTAGTAAAG 57.227 45.455 0.00 0.00 0.00 1.85
208 209 5.282946 AGTAGGGTATGCTTGGGTAGTAAA 58.717 41.667 0.00 0.00 0.00 2.01
209 210 4.887367 AGTAGGGTATGCTTGGGTAGTAA 58.113 43.478 0.00 0.00 0.00 2.24
210 211 4.547886 AGTAGGGTATGCTTGGGTAGTA 57.452 45.455 0.00 0.00 0.00 1.82
211 212 3.416414 AGTAGGGTATGCTTGGGTAGT 57.584 47.619 0.00 0.00 0.00 2.73
212 213 4.481072 AGTAGTAGGGTATGCTTGGGTAG 58.519 47.826 0.00 0.00 0.00 3.18
213 214 4.547886 AGTAGTAGGGTATGCTTGGGTA 57.452 45.455 0.00 0.00 0.00 3.69
214 215 3.416414 AGTAGTAGGGTATGCTTGGGT 57.584 47.619 0.00 0.00 0.00 4.51
215 216 4.481072 AGTAGTAGTAGGGTATGCTTGGG 58.519 47.826 0.00 0.00 0.00 4.12
216 217 6.305411 AGTAGTAGTAGTAGGGTATGCTTGG 58.695 44.000 0.00 0.00 0.00 3.61
217 218 8.156165 AGTAGTAGTAGTAGTAGGGTATGCTTG 58.844 40.741 0.00 0.00 0.00 4.01
218 219 8.273923 AGTAGTAGTAGTAGTAGGGTATGCTT 57.726 38.462 0.00 0.00 0.00 3.91
219 220 7.870426 AGTAGTAGTAGTAGTAGGGTATGCT 57.130 40.000 0.00 0.00 0.00 3.79
220 221 8.811994 AGTAGTAGTAGTAGTAGTAGGGTATGC 58.188 40.741 0.49 0.00 0.00 3.14
286 287 8.856103 GCCTGTAGTAGTAGTAGTAGTAGTAGT 58.144 40.741 10.69 10.69 0.00 2.73
287 288 8.855110 TGCCTGTAGTAGTAGTAGTAGTAGTAG 58.145 40.741 7.10 3.24 0.00 2.57
288 289 8.768501 TGCCTGTAGTAGTAGTAGTAGTAGTA 57.231 38.462 3.69 3.69 0.00 1.82
289 290 7.667575 TGCCTGTAGTAGTAGTAGTAGTAGT 57.332 40.000 5.34 5.34 0.00 2.73
290 291 8.954950 TTTGCCTGTAGTAGTAGTAGTAGTAG 57.045 38.462 0.49 0.00 0.00 2.57
291 292 8.762645 TCTTTGCCTGTAGTAGTAGTAGTAGTA 58.237 37.037 0.00 0.00 0.00 1.82
292 293 7.628234 TCTTTGCCTGTAGTAGTAGTAGTAGT 58.372 38.462 0.00 0.00 0.00 2.73
293 294 8.397148 GTTCTTTGCCTGTAGTAGTAGTAGTAG 58.603 40.741 0.00 0.00 0.00 2.57
294 295 7.337942 GGTTCTTTGCCTGTAGTAGTAGTAGTA 59.662 40.741 0.00 0.00 0.00 1.82
295 296 6.152492 GGTTCTTTGCCTGTAGTAGTAGTAGT 59.848 42.308 0.00 0.00 0.00 2.73
299 300 5.401531 TGGTTCTTTGCCTGTAGTAGTAG 57.598 43.478 0.00 0.00 0.00 2.57
336 337 0.321653 ATCGCTGTGGTTGGGAAGTC 60.322 55.000 0.00 0.00 0.00 3.01
351 352 0.449388 CTTTGCCTCTTCCACATCGC 59.551 55.000 0.00 0.00 0.00 4.58
355 356 2.224523 ACGATTCTTTGCCTCTTCCACA 60.225 45.455 0.00 0.00 0.00 4.17
492 505 0.904865 TGTCCTGTACTCCCTGGCAG 60.905 60.000 7.75 7.75 0.00 4.85
495 508 1.210478 CCATTGTCCTGTACTCCCTGG 59.790 57.143 0.00 0.00 0.00 4.45
529 542 6.432607 TTGCATGAGATTAAGCTTCTTCAG 57.567 37.500 0.00 0.00 0.00 3.02
551 564 1.469335 TTCCTCGTCGTCAAGCCCTT 61.469 55.000 0.00 0.00 0.00 3.95
726 947 1.219393 GTCAAGGCTTCCTCCCTCG 59.781 63.158 0.00 0.00 30.89 4.63
865 1097 3.248029 GTGCCAGACAAGAGCACG 58.752 61.111 0.00 0.00 46.43 5.34
891 1123 6.318900 CCTCACACAGTCCCTTAATTATTTCC 59.681 42.308 0.00 0.00 0.00 3.13
1180 1423 5.554822 TTTGCCGTTTACTGATGTATTCC 57.445 39.130 0.00 0.00 0.00 3.01
1295 1538 8.255206 TCTTACAAGCTCAATAAATACTTCGGA 58.745 33.333 0.00 0.00 0.00 4.55
1407 1691 7.309012 CCAGAATTGATATACCTGCAGAATTGG 60.309 40.741 17.39 6.81 0.00 3.16
1425 1709 2.675889 GCATCCTGTTTGCCCAGAATTG 60.676 50.000 0.00 0.00 34.23 2.32
1435 1719 1.180456 TGTGCCCTGCATCCTGTTTG 61.180 55.000 0.00 0.00 41.91 2.93
1784 2376 5.835280 CAGCACCCCCTATTAAAAATCTCAT 59.165 40.000 0.00 0.00 0.00 2.90
1797 2390 0.988145 CCATCCTTCAGCACCCCCTA 60.988 60.000 0.00 0.00 0.00 3.53
2168 2832 4.016444 ACCCAACCATGAATCATGTGTAC 58.984 43.478 20.39 0.00 39.94 2.90
2198 2862 4.287067 TCCTTTCTTGTTGGATGCTACTCT 59.713 41.667 0.15 0.00 0.00 3.24
2207 2873 4.175962 ACCCTATCTCCTTTCTTGTTGGA 58.824 43.478 0.00 0.00 0.00 3.53
2676 3512 3.119065 TGGCATGTATCCACTGCATTTTG 60.119 43.478 0.00 0.00 37.64 2.44
2677 3513 3.098377 TGGCATGTATCCACTGCATTTT 58.902 40.909 0.00 0.00 37.64 1.82
2719 3555 2.548057 GTCAAACTTCGGACTGATTGCA 59.452 45.455 0.00 0.00 0.00 4.08
2791 3627 5.073965 AGGGGTATGTGGAAAACTGAAGTAA 59.926 40.000 0.00 0.00 0.00 2.24
2809 3645 8.093118 TCTTAATAAATTCTTTCGGAGGGGTA 57.907 34.615 0.00 0.00 0.00 3.69
2888 3727 0.395724 GGGAACAGGGGTAAGGCATG 60.396 60.000 0.00 0.00 0.00 4.06
2889 3728 1.580994 GGGGAACAGGGGTAAGGCAT 61.581 60.000 0.00 0.00 0.00 4.40
2927 3780 7.336931 AGTTTTCACGCACCTAGATAATTGAAT 59.663 33.333 0.00 0.00 0.00 2.57
3150 4539 4.081365 TGACAAAAGACATACGGCCTGATA 60.081 41.667 0.00 0.00 0.00 2.15
3300 4711 9.326413 AGGAACTGTTAAATAATGTAGGAATCG 57.674 33.333 0.00 0.00 37.18 3.34
3355 4766 7.170965 AGATGATAACAAGGTCTTCAACACAT 58.829 34.615 0.00 0.00 0.00 3.21
3358 4769 7.907389 AGTAGATGATAACAAGGTCTTCAACA 58.093 34.615 0.00 0.00 0.00 3.33
3380 4791 8.918202 ACCAATATTTGAACTTGAAGTGAGTA 57.082 30.769 0.00 0.00 0.00 2.59
3387 4798 8.017418 AGGAACAACCAATATTTGAACTTGAA 57.983 30.769 0.00 0.00 42.04 2.69
3388 4799 7.505585 AGAGGAACAACCAATATTTGAACTTGA 59.494 33.333 0.00 0.00 42.04 3.02
3389 4800 7.661040 AGAGGAACAACCAATATTTGAACTTG 58.339 34.615 0.00 0.00 42.04 3.16
3390 4801 7.839680 AGAGGAACAACCAATATTTGAACTT 57.160 32.000 0.00 0.00 42.04 2.66
3391 4802 7.839680 AAGAGGAACAACCAATATTTGAACT 57.160 32.000 0.00 0.00 42.04 3.01
3392 4803 7.926018 ACAAAGAGGAACAACCAATATTTGAAC 59.074 33.333 0.00 0.00 42.04 3.18
3399 4810 3.500680 GCGACAAAGAGGAACAACCAATA 59.499 43.478 0.00 0.00 42.04 1.90
3405 4816 1.939934 CACTGCGACAAAGAGGAACAA 59.060 47.619 0.00 0.00 0.00 2.83
3466 4877 2.009051 TGTTCATCTACAATGCGCCAG 58.991 47.619 4.18 0.00 0.00 4.85
3494 4909 4.517075 TGTTCATCTACACCATCGCAAAAA 59.483 37.500 0.00 0.00 0.00 1.94
3495 4910 4.068599 TGTTCATCTACACCATCGCAAAA 58.931 39.130 0.00 0.00 0.00 2.44
3496 4911 3.669536 TGTTCATCTACACCATCGCAAA 58.330 40.909 0.00 0.00 0.00 3.68
3497 4912 3.326836 TGTTCATCTACACCATCGCAA 57.673 42.857 0.00 0.00 0.00 4.85
3498 4913 3.118811 TCATGTTCATCTACACCATCGCA 60.119 43.478 0.00 0.00 0.00 5.10
3499 4914 3.457234 TCATGTTCATCTACACCATCGC 58.543 45.455 0.00 0.00 0.00 4.58
3500 4915 7.713764 TTAATCATGTTCATCTACACCATCG 57.286 36.000 0.00 0.00 0.00 3.84
3501 4916 9.888878 CAATTAATCATGTTCATCTACACCATC 57.111 33.333 0.00 0.00 0.00 3.51
3502 4917 8.355169 GCAATTAATCATGTTCATCTACACCAT 58.645 33.333 0.00 0.00 0.00 3.55
3503 4918 7.557358 AGCAATTAATCATGTTCATCTACACCA 59.443 33.333 0.00 0.00 0.00 4.17
3504 4919 7.934457 AGCAATTAATCATGTTCATCTACACC 58.066 34.615 0.00 0.00 0.00 4.16
3505 4920 9.229784 CAAGCAATTAATCATGTTCATCTACAC 57.770 33.333 0.00 0.00 0.00 2.90
3564 4979 4.236935 TCTGCCGAATTTGAAGATTTTGC 58.763 39.130 0.00 0.00 0.00 3.68
3565 4980 6.587226 TGAATCTGCCGAATTTGAAGATTTTG 59.413 34.615 17.77 0.00 37.63 2.44
3571 4986 4.142315 ACCATGAATCTGCCGAATTTGAAG 60.142 41.667 0.00 0.00 0.00 3.02
3614 5029 1.003223 GCAGGTGTTGTGGTTTACGTC 60.003 52.381 0.00 0.00 0.00 4.34
3624 5039 4.085876 GCATCCAGCAGGTGTTGT 57.914 55.556 0.00 0.00 44.79 3.32
3657 5072 1.198759 TCCCTGCTACCGCCTTTCTT 61.199 55.000 0.00 0.00 34.43 2.52
3658 5073 1.612442 TCCCTGCTACCGCCTTTCT 60.612 57.895 0.00 0.00 34.43 2.52
3688 5103 7.225931 TGGAAATCACACTAACAACTCTTGTAC 59.774 37.037 0.00 0.00 44.59 2.90
3692 5107 9.520515 AATATGGAAATCACACTAACAACTCTT 57.479 29.630 0.00 0.00 0.00 2.85
3695 5110 9.959721 ACTAATATGGAAATCACACTAACAACT 57.040 29.630 0.00 0.00 0.00 3.16
3703 5118 9.994432 CAGAAGAAACTAATATGGAAATCACAC 57.006 33.333 0.00 0.00 0.00 3.82
3704 5119 9.739276 ACAGAAGAAACTAATATGGAAATCACA 57.261 29.630 0.00 0.00 0.00 3.58
3726 5141 3.252944 TCGCAATTTGCTTGATTGACAGA 59.747 39.130 18.57 2.49 42.25 3.41
3734 5149 2.094597 CCCAAGATCGCAATTTGCTTGA 60.095 45.455 18.57 10.16 42.25 3.02
3744 5159 1.833630 ACTCTGATTCCCAAGATCGCA 59.166 47.619 0.00 0.00 0.00 5.10
3747 5162 3.557228 AGCACTCTGATTCCCAAGATC 57.443 47.619 0.00 0.00 0.00 2.75
3753 5168 1.501582 ACCCTAGCACTCTGATTCCC 58.498 55.000 0.00 0.00 0.00 3.97
3757 5172 9.806448 CATATATAGATACCCTAGCACTCTGAT 57.194 37.037 0.00 0.00 0.00 2.90
3758 5173 8.782927 ACATATATAGATACCCTAGCACTCTGA 58.217 37.037 0.00 0.00 0.00 3.27
3759 5174 8.988546 ACATATATAGATACCCTAGCACTCTG 57.011 38.462 0.00 0.00 0.00 3.35
3778 5194 8.028938 GCTTTCTTGAGCTTTTGGAAACATATA 58.971 33.333 0.00 0.00 38.94 0.86
3779 5195 6.870439 GCTTTCTTGAGCTTTTGGAAACATAT 59.130 34.615 0.00 0.00 38.94 1.78
3780 5196 6.183360 TGCTTTCTTGAGCTTTTGGAAACATA 60.183 34.615 0.00 0.00 43.11 2.29
3781 5197 5.052481 GCTTTCTTGAGCTTTTGGAAACAT 58.948 37.500 0.00 0.00 38.94 2.71
3782 5198 4.081752 TGCTTTCTTGAGCTTTTGGAAACA 60.082 37.500 0.00 0.00 43.11 2.83
3783 5199 4.268644 GTGCTTTCTTGAGCTTTTGGAAAC 59.731 41.667 0.00 0.00 43.11 2.78
3784 5200 4.160252 AGTGCTTTCTTGAGCTTTTGGAAA 59.840 37.500 0.00 0.00 43.11 3.13
3785 5201 3.701040 AGTGCTTTCTTGAGCTTTTGGAA 59.299 39.130 0.00 0.00 43.11 3.53
3786 5202 3.290710 AGTGCTTTCTTGAGCTTTTGGA 58.709 40.909 0.00 0.00 43.11 3.53
3787 5203 3.636381 GAGTGCTTTCTTGAGCTTTTGG 58.364 45.455 0.00 0.00 43.11 3.28
3788 5204 3.002656 TCGAGTGCTTTCTTGAGCTTTTG 59.997 43.478 0.00 0.00 43.11 2.44
3789 5205 3.206150 TCGAGTGCTTTCTTGAGCTTTT 58.794 40.909 0.00 0.00 43.11 2.27
3790 5206 2.838736 TCGAGTGCTTTCTTGAGCTTT 58.161 42.857 0.00 0.00 43.11 3.51
3791 5207 2.533266 TCGAGTGCTTTCTTGAGCTT 57.467 45.000 0.00 0.00 43.11 3.74
3792 5208 2.028658 TGATCGAGTGCTTTCTTGAGCT 60.029 45.455 0.00 0.00 43.11 4.09
3793 5209 2.341257 TGATCGAGTGCTTTCTTGAGC 58.659 47.619 0.00 0.00 43.00 4.26
3794 5210 3.367327 CACTGATCGAGTGCTTTCTTGAG 59.633 47.826 10.89 0.00 45.72 3.02
3795 5211 3.320626 CACTGATCGAGTGCTTTCTTGA 58.679 45.455 10.89 0.00 45.72 3.02
3796 5212 3.719083 CACTGATCGAGTGCTTTCTTG 57.281 47.619 10.89 0.00 45.72 3.02
3805 5221 2.725312 ATGGCCGCACTGATCGAGT 61.725 57.895 0.00 0.00 34.02 4.18
3806 5222 2.107750 ATGGCCGCACTGATCGAG 59.892 61.111 0.00 0.00 0.00 4.04
3807 5223 2.202919 CATGGCCGCACTGATCGA 60.203 61.111 0.00 0.00 0.00 3.59
3808 5224 3.945434 GCATGGCCGCACTGATCG 61.945 66.667 0.00 0.00 0.00 3.69
3809 5225 3.589881 GGCATGGCCGCACTGATC 61.590 66.667 8.35 0.00 39.62 2.92
3819 5235 1.866880 GCGAAAGATGATTGGCATGGC 60.867 52.381 13.29 13.29 37.34 4.40
3820 5236 1.269413 GGCGAAAGATGATTGGCATGG 60.269 52.381 0.00 0.00 37.34 3.66
3821 5237 1.406180 TGGCGAAAGATGATTGGCATG 59.594 47.619 0.00 0.00 37.34 4.06
3822 5238 1.406539 GTGGCGAAAGATGATTGGCAT 59.593 47.619 0.00 0.00 40.77 4.40
3823 5239 0.810648 GTGGCGAAAGATGATTGGCA 59.189 50.000 0.00 0.00 35.95 4.92
3824 5240 1.098050 AGTGGCGAAAGATGATTGGC 58.902 50.000 0.00 0.00 33.80 4.52
3825 5241 2.874701 CCTAGTGGCGAAAGATGATTGG 59.125 50.000 0.00 0.00 0.00 3.16
3826 5242 3.797039 TCCTAGTGGCGAAAGATGATTG 58.203 45.455 0.00 0.00 0.00 2.67
3827 5243 3.742640 GCTCCTAGTGGCGAAAGATGATT 60.743 47.826 0.00 0.00 0.00 2.57
3828 5244 2.224161 GCTCCTAGTGGCGAAAGATGAT 60.224 50.000 0.00 0.00 0.00 2.45
3829 5245 1.137086 GCTCCTAGTGGCGAAAGATGA 59.863 52.381 0.00 0.00 0.00 2.92
3830 5246 1.576356 GCTCCTAGTGGCGAAAGATG 58.424 55.000 0.00 0.00 0.00 2.90
3831 5247 0.466124 GGCTCCTAGTGGCGAAAGAT 59.534 55.000 0.00 0.00 0.00 2.40
3832 5248 1.614241 GGGCTCCTAGTGGCGAAAGA 61.614 60.000 0.00 0.00 0.00 2.52
3833 5249 1.153349 GGGCTCCTAGTGGCGAAAG 60.153 63.158 0.00 0.00 0.00 2.62
3834 5250 1.612442 AGGGCTCCTAGTGGCGAAA 60.612 57.895 0.00 0.00 28.47 3.46
3835 5251 2.038975 AGGGCTCCTAGTGGCGAA 59.961 61.111 0.00 0.00 28.47 4.70
3836 5252 2.759973 CAGGGCTCCTAGTGGCGA 60.760 66.667 0.00 0.00 29.64 5.54
3837 5253 2.185310 AAACAGGGCTCCTAGTGGCG 62.185 60.000 0.00 0.00 29.64 5.69
3838 5254 0.909623 TAAACAGGGCTCCTAGTGGC 59.090 55.000 0.00 0.00 29.64 5.01
3839 5255 3.263425 TCTTTAAACAGGGCTCCTAGTGG 59.737 47.826 0.00 0.00 29.64 4.00
3840 5256 4.553330 TCTTTAAACAGGGCTCCTAGTG 57.447 45.455 0.00 0.00 29.64 2.74
3841 5257 5.073280 AGTTTCTTTAAACAGGGCTCCTAGT 59.927 40.000 4.04 0.00 46.18 2.57
3842 5258 5.561679 AGTTTCTTTAAACAGGGCTCCTAG 58.438 41.667 4.04 0.00 46.18 3.02
3843 5259 5.578157 AGTTTCTTTAAACAGGGCTCCTA 57.422 39.130 4.04 0.00 46.18 2.94
3844 5260 4.455070 AGTTTCTTTAAACAGGGCTCCT 57.545 40.909 4.04 0.00 46.18 3.69
3845 5261 6.444633 GTTTAGTTTCTTTAAACAGGGCTCC 58.555 40.000 4.04 0.00 46.18 4.70
3846 5262 6.264744 AGGTTTAGTTTCTTTAAACAGGGCTC 59.735 38.462 9.32 0.00 46.18 4.70
3847 5263 6.134055 AGGTTTAGTTTCTTTAAACAGGGCT 58.866 36.000 9.32 0.00 46.18 5.19
3848 5264 6.401047 AGGTTTAGTTTCTTTAAACAGGGC 57.599 37.500 9.32 0.00 46.18 5.19
3849 5265 7.223971 GCAAAGGTTTAGTTTCTTTAAACAGGG 59.776 37.037 9.32 0.00 46.18 4.45
3850 5266 7.043656 CGCAAAGGTTTAGTTTCTTTAAACAGG 60.044 37.037 9.32 0.00 46.18 4.00
3851 5267 7.514591 GCGCAAAGGTTTAGTTTCTTTAAACAG 60.515 37.037 0.30 0.13 46.18 3.16
3852 5268 6.253942 GCGCAAAGGTTTAGTTTCTTTAAACA 59.746 34.615 0.30 0.00 46.18 2.83
3853 5269 6.253942 TGCGCAAAGGTTTAGTTTCTTTAAAC 59.746 34.615 8.16 0.00 44.47 2.01
3854 5270 6.331061 TGCGCAAAGGTTTAGTTTCTTTAAA 58.669 32.000 8.16 0.00 0.00 1.52
3855 5271 5.892568 TGCGCAAAGGTTTAGTTTCTTTAA 58.107 33.333 8.16 0.00 0.00 1.52
3856 5272 5.502153 TGCGCAAAGGTTTAGTTTCTTTA 57.498 34.783 8.16 0.00 0.00 1.85
3857 5273 4.359706 CTGCGCAAAGGTTTAGTTTCTTT 58.640 39.130 13.05 0.00 0.00 2.52
3858 5274 3.795488 GCTGCGCAAAGGTTTAGTTTCTT 60.795 43.478 13.05 0.00 0.00 2.52
3859 5275 2.287608 GCTGCGCAAAGGTTTAGTTTCT 60.288 45.455 13.05 0.00 0.00 2.52
3860 5276 2.051423 GCTGCGCAAAGGTTTAGTTTC 58.949 47.619 13.05 0.00 0.00 2.78
3861 5277 1.407258 TGCTGCGCAAAGGTTTAGTTT 59.593 42.857 13.05 0.00 34.76 2.66
3862 5278 1.028905 TGCTGCGCAAAGGTTTAGTT 58.971 45.000 13.05 0.00 34.76 2.24
3863 5279 0.310854 GTGCTGCGCAAAGGTTTAGT 59.689 50.000 13.05 0.00 41.47 2.24
3864 5280 0.725784 CGTGCTGCGCAAAGGTTTAG 60.726 55.000 13.05 0.00 41.47 1.85
3865 5281 1.281353 CGTGCTGCGCAAAGGTTTA 59.719 52.632 13.05 0.00 41.47 2.01
3866 5282 2.026014 CGTGCTGCGCAAAGGTTT 59.974 55.556 13.05 0.00 41.47 3.27
3888 5304 6.203338 CCAGGAAATTTTACATTGCCATATGC 59.797 38.462 0.00 0.00 41.77 3.14
3889 5305 6.203338 GCCAGGAAATTTTACATTGCCATATG 59.797 38.462 0.00 0.00 0.00 1.78
3890 5306 6.290605 GCCAGGAAATTTTACATTGCCATAT 58.709 36.000 0.00 0.00 0.00 1.78
3891 5307 5.396213 GGCCAGGAAATTTTACATTGCCATA 60.396 40.000 0.00 0.00 35.30 2.74
3892 5308 4.516323 GCCAGGAAATTTTACATTGCCAT 58.484 39.130 0.00 0.00 0.00 4.40
3893 5309 3.307339 GGCCAGGAAATTTTACATTGCCA 60.307 43.478 0.00 0.00 35.30 4.92
3894 5310 3.270027 GGCCAGGAAATTTTACATTGCC 58.730 45.455 0.00 3.88 0.00 4.52
3895 5311 3.936564 TGGCCAGGAAATTTTACATTGC 58.063 40.909 0.00 0.00 0.00 3.56
3896 5312 5.813672 CAGATGGCCAGGAAATTTTACATTG 59.186 40.000 13.05 0.00 0.00 2.82
3897 5313 5.627503 GCAGATGGCCAGGAAATTTTACATT 60.628 40.000 13.05 0.00 36.11 2.71
3898 5314 4.141869 GCAGATGGCCAGGAAATTTTACAT 60.142 41.667 13.05 0.00 36.11 2.29
3899 5315 3.195396 GCAGATGGCCAGGAAATTTTACA 59.805 43.478 13.05 0.00 36.11 2.41
3900 5316 3.785486 GCAGATGGCCAGGAAATTTTAC 58.215 45.455 13.05 0.00 36.11 2.01
3913 5329 0.392461 TACAAACCGAGGCAGATGGC 60.392 55.000 0.00 0.00 43.74 4.40
3914 5330 1.066143 AGTACAAACCGAGGCAGATGG 60.066 52.381 0.00 0.00 0.00 3.51
3915 5331 2.386661 AGTACAAACCGAGGCAGATG 57.613 50.000 0.00 0.00 0.00 2.90
3916 5332 3.074412 CAAAGTACAAACCGAGGCAGAT 58.926 45.455 0.00 0.00 0.00 2.90
3917 5333 2.158871 ACAAAGTACAAACCGAGGCAGA 60.159 45.455 0.00 0.00 0.00 4.26
3918 5334 2.218603 ACAAAGTACAAACCGAGGCAG 58.781 47.619 0.00 0.00 0.00 4.85
3919 5335 2.335316 ACAAAGTACAAACCGAGGCA 57.665 45.000 0.00 0.00 0.00 4.75
3920 5336 5.413499 TCTATACAAAGTACAAACCGAGGC 58.587 41.667 0.00 0.00 0.00 4.70
3921 5337 5.519206 GCTCTATACAAAGTACAAACCGAGG 59.481 44.000 0.00 0.00 0.00 4.63
3922 5338 5.519206 GGCTCTATACAAAGTACAAACCGAG 59.481 44.000 0.00 0.00 0.00 4.63
3923 5339 5.186409 AGGCTCTATACAAAGTACAAACCGA 59.814 40.000 0.00 0.00 0.00 4.69
3924 5340 5.291128 CAGGCTCTATACAAAGTACAAACCG 59.709 44.000 0.00 0.00 0.00 4.44
3925 5341 6.092259 CACAGGCTCTATACAAAGTACAAACC 59.908 42.308 0.00 0.00 0.00 3.27
3926 5342 6.649557 ACACAGGCTCTATACAAAGTACAAAC 59.350 38.462 0.00 0.00 0.00 2.93
3927 5343 6.649141 CACACAGGCTCTATACAAAGTACAAA 59.351 38.462 0.00 0.00 0.00 2.83
3928 5344 6.163476 CACACAGGCTCTATACAAAGTACAA 58.837 40.000 0.00 0.00 0.00 2.41
3929 5345 5.720202 CACACAGGCTCTATACAAAGTACA 58.280 41.667 0.00 0.00 0.00 2.90
3930 5346 4.567159 GCACACAGGCTCTATACAAAGTAC 59.433 45.833 0.00 0.00 0.00 2.73
3931 5347 4.466370 AGCACACAGGCTCTATACAAAGTA 59.534 41.667 0.00 0.00 41.05 2.24
3932 5348 3.261897 AGCACACAGGCTCTATACAAAGT 59.738 43.478 0.00 0.00 41.05 2.66
3933 5349 3.620374 CAGCACACAGGCTCTATACAAAG 59.380 47.826 0.00 0.00 43.68 2.77
3934 5350 3.260632 TCAGCACACAGGCTCTATACAAA 59.739 43.478 0.00 0.00 43.68 2.83
3935 5351 2.831526 TCAGCACACAGGCTCTATACAA 59.168 45.455 0.00 0.00 43.68 2.41
3936 5352 2.166459 GTCAGCACACAGGCTCTATACA 59.834 50.000 0.00 0.00 43.68 2.29
3937 5353 2.796383 CGTCAGCACACAGGCTCTATAC 60.796 54.545 0.00 0.00 43.68 1.47
3938 5354 1.405463 CGTCAGCACACAGGCTCTATA 59.595 52.381 0.00 0.00 43.68 1.31
3939 5355 0.174389 CGTCAGCACACAGGCTCTAT 59.826 55.000 0.00 0.00 43.68 1.98
3940 5356 0.893727 TCGTCAGCACACAGGCTCTA 60.894 55.000 0.00 0.00 43.68 2.43
3941 5357 1.539560 ATCGTCAGCACACAGGCTCT 61.540 55.000 0.00 0.00 43.68 4.09
3942 5358 0.671781 AATCGTCAGCACACAGGCTC 60.672 55.000 0.00 0.00 43.68 4.70
3944 5360 0.110056 CAAATCGTCAGCACACAGGC 60.110 55.000 0.00 0.00 0.00 4.85
3945 5361 1.195448 GACAAATCGTCAGCACACAGG 59.805 52.381 0.00 0.00 44.69 4.00
3946 5362 2.584166 GACAAATCGTCAGCACACAG 57.416 50.000 0.00 0.00 44.69 3.66
3955 5371 1.717194 TTAGCGGTGGACAAATCGTC 58.283 50.000 0.00 0.00 44.57 4.20
3956 5372 2.006888 CATTAGCGGTGGACAAATCGT 58.993 47.619 0.00 0.00 0.00 3.73
3957 5373 2.006888 ACATTAGCGGTGGACAAATCG 58.993 47.619 0.00 0.00 0.00 3.34
3958 5374 4.434713 AAACATTAGCGGTGGACAAATC 57.565 40.909 0.00 0.00 0.00 2.17
3959 5375 5.968528 TTAAACATTAGCGGTGGACAAAT 57.031 34.783 0.00 0.00 0.00 2.32
3960 5376 5.336055 CCATTAAACATTAGCGGTGGACAAA 60.336 40.000 0.00 0.00 0.00 2.83
3961 5377 4.156922 CCATTAAACATTAGCGGTGGACAA 59.843 41.667 0.00 0.00 0.00 3.18
3962 5378 3.692101 CCATTAAACATTAGCGGTGGACA 59.308 43.478 0.00 0.00 0.00 4.02
3963 5379 3.942748 TCCATTAAACATTAGCGGTGGAC 59.057 43.478 0.00 0.00 30.10 4.02
3964 5380 4.223556 TCCATTAAACATTAGCGGTGGA 57.776 40.909 0.00 0.00 32.48 4.02
3965 5381 4.398044 AGTTCCATTAAACATTAGCGGTGG 59.602 41.667 0.00 0.00 0.00 4.61
3966 5382 5.560966 AGTTCCATTAAACATTAGCGGTG 57.439 39.130 0.00 0.00 0.00 4.94
3967 5383 6.646267 TCTAGTTCCATTAAACATTAGCGGT 58.354 36.000 0.00 0.00 0.00 5.68
3968 5384 7.441157 TCATCTAGTTCCATTAAACATTAGCGG 59.559 37.037 0.00 0.00 0.00 5.52
3969 5385 8.276325 GTCATCTAGTTCCATTAAACATTAGCG 58.724 37.037 0.00 0.00 0.00 4.26
3970 5386 8.560374 GGTCATCTAGTTCCATTAAACATTAGC 58.440 37.037 0.00 0.00 0.00 3.09
3971 5387 9.057089 GGGTCATCTAGTTCCATTAAACATTAG 57.943 37.037 0.00 0.00 0.00 1.73
3972 5388 7.713507 CGGGTCATCTAGTTCCATTAAACATTA 59.286 37.037 0.00 0.00 0.00 1.90
3973 5389 6.542370 CGGGTCATCTAGTTCCATTAAACATT 59.458 38.462 0.00 0.00 0.00 2.71
3974 5390 6.055588 CGGGTCATCTAGTTCCATTAAACAT 58.944 40.000 0.00 0.00 0.00 2.71
3975 5391 5.046159 ACGGGTCATCTAGTTCCATTAAACA 60.046 40.000 0.00 0.00 0.00 2.83
3976 5392 5.425630 ACGGGTCATCTAGTTCCATTAAAC 58.574 41.667 0.00 0.00 0.00 2.01
3977 5393 5.687166 ACGGGTCATCTAGTTCCATTAAA 57.313 39.130 0.00 0.00 0.00 1.52
3978 5394 5.424757 CAACGGGTCATCTAGTTCCATTAA 58.575 41.667 0.00 0.00 0.00 1.40
3979 5395 4.682320 GCAACGGGTCATCTAGTTCCATTA 60.682 45.833 0.00 0.00 0.00 1.90
3980 5396 3.873910 CAACGGGTCATCTAGTTCCATT 58.126 45.455 0.00 0.00 0.00 3.16
3981 5397 2.420129 GCAACGGGTCATCTAGTTCCAT 60.420 50.000 0.00 0.00 0.00 3.41
3982 5398 1.066430 GCAACGGGTCATCTAGTTCCA 60.066 52.381 0.00 0.00 0.00 3.53
3983 5399 1.653151 GCAACGGGTCATCTAGTTCC 58.347 55.000 0.00 0.00 0.00 3.62
3984 5400 1.278238 CGCAACGGGTCATCTAGTTC 58.722 55.000 0.00 0.00 0.00 3.01
4250 5666 2.417097 GGTATTTGCGCCATGGGC 59.583 61.111 15.13 15.60 46.75 5.36
4549 5965 4.262164 GGTTGTCAATGCACTTTCAAGGAT 60.262 41.667 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.