Multiple sequence alignment - TraesCS4A01G480300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G480300 chr4A 100.000 3914 0 0 1 3914 736897790 736901703 0.000000e+00 7228
1 TraesCS4A01G480300 chr4A 95.430 2779 118 2 1 2779 736469662 736466893 0.000000e+00 4420
2 TraesCS4A01G480300 chr4A 92.639 2785 166 16 6 2779 734386220 734388976 0.000000e+00 3971
3 TraesCS4A01G480300 chr4A 85.816 2799 335 37 7 2779 735561657 735558895 0.000000e+00 2913
4 TraesCS4A01G480300 chr4A 85.612 2780 362 20 6 2779 736757366 736760113 0.000000e+00 2883
5 TraesCS4A01G480300 chr4A 85.514 2782 347 28 22 2779 736412250 736409501 0.000000e+00 2854
6 TraesCS4A01G480300 chr4A 85.213 2793 361 31 6 2779 735317355 735320114 0.000000e+00 2822
7 TraesCS4A01G480300 chr4A 82.987 2792 416 32 6 2779 734731705 734734455 0.000000e+00 2470
8 TraesCS4A01G480300 chr4A 82.838 2791 421 31 6 2779 736571782 736574531 0.000000e+00 2447
9 TraesCS4A01G480300 chr4A 82.581 2790 433 32 6 2779 735748181 735750933 0.000000e+00 2410
10 TraesCS4A01G480300 chr4A 83.356 2247 308 41 6 2218 735832714 735834928 0.000000e+00 2017
11 TraesCS4A01G480300 chr4A 89.404 1208 97 11 1 1199 734481180 734482365 0.000000e+00 1493
12 TraesCS4A01G480300 chr4A 91.230 764 59 7 3154 3914 3360382 3359624 0.000000e+00 1033
13 TraesCS4A01G480300 chr4A 98.824 340 3 1 2779 3118 734388925 734389263 4.330000e-169 604
14 TraesCS4A01G480300 chr4A 90.778 347 26 5 2779 3120 736466944 736466599 3.560000e-125 459
15 TraesCS4A01G480300 chr4A 86.325 234 24 5 2779 3012 735320063 735320288 8.400000e-62 248
16 TraesCS4A01G480300 chr4A 85.957 235 22 6 2779 3012 736409549 736409325 1.410000e-59 241
17 TraesCS4A01G480300 chr4A 80.422 332 47 12 2779 3106 736474884 736474567 1.820000e-58 237
18 TraesCS4A01G480300 chr4A 85.837 233 18 7 2779 3010 736760065 736760283 2.350000e-57 233
19 TraesCS4A01G480300 chr4A 79.251 347 57 10 2779 3118 736574480 736574818 1.090000e-55 228
20 TraesCS4A01G480300 chr4A 79.935 309 52 7 2786 3086 735750889 735751195 6.580000e-53 219
21 TraesCS4A01G480300 chr4A 92.754 138 9 1 2982 3118 735834931 735835068 8.580000e-47 198
22 TraesCS4A01G480300 chr7A 94.572 2782 140 2 1 2779 6927620 6924847 0.000000e+00 4290
23 TraesCS4A01G480300 chr7A 91.242 765 59 7 3154 3914 112438451 112437691 0.000000e+00 1035
24 TraesCS4A01G480300 chr7A 90.517 348 20 6 2779 3120 6924898 6924558 7.710000e-122 448
25 TraesCS4A01G480300 chr7D 94.339 2791 128 13 1 2779 5448082 5445310 0.000000e+00 4252
26 TraesCS4A01G480300 chr7D 84.003 2813 382 35 6 2779 5637051 5634268 0.000000e+00 2639
27 TraesCS4A01G480300 chr7D 83.226 2784 419 28 9 2779 5648334 5645586 0.000000e+00 2510
28 TraesCS4A01G480300 chr7D 83.172 2787 420 27 6 2779 5485824 5483074 0.000000e+00 2503
29 TraesCS4A01G480300 chr7D 81.471 340 55 7 2779 3117 5634319 5633987 4.980000e-69 272
30 TraesCS4A01G480300 chr7D 86.383 235 22 5 2779 3012 5445358 5445133 8.400000e-62 248
31 TraesCS4A01G480300 chr5B 95.771 804 24 5 3114 3914 696444310 696443514 0.000000e+00 1288
32 TraesCS4A01G480300 chr5B 90.482 767 63 8 3154 3914 124295704 124296466 0.000000e+00 1003
33 TraesCS4A01G480300 chr7B 90.719 765 62 8 3154 3914 64629429 64630188 0.000000e+00 1011
34 TraesCS4A01G480300 chr3D 90.695 763 66 5 3154 3914 177057285 177056526 0.000000e+00 1011
35 TraesCS4A01G480300 chr5A 90.576 764 65 6 3154 3914 554819588 554818829 0.000000e+00 1005
36 TraesCS4A01G480300 chr5A 90.314 764 67 6 3154 3914 554826104 554825345 0.000000e+00 994
37 TraesCS4A01G480300 chr5A 90.052 764 69 6 3154 3914 554813075 554812316 0.000000e+00 983


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G480300 chr4A 736897790 736901703 3913 False 7228.0 7228 100.0000 1 3914 1 chr4A.!!$F3 3913
1 TraesCS4A01G480300 chr4A 735558895 735561657 2762 True 2913.0 2913 85.8160 7 2779 1 chr4A.!!$R2 2772
2 TraesCS4A01G480300 chr4A 734731705 734734455 2750 False 2470.0 2470 82.9870 6 2779 1 chr4A.!!$F2 2773
3 TraesCS4A01G480300 chr4A 736466599 736469662 3063 True 2439.5 4420 93.1040 1 3120 2 chr4A.!!$R5 3119
4 TraesCS4A01G480300 chr4A 734386220 734389263 3043 False 2287.5 3971 95.7315 6 3118 2 chr4A.!!$F4 3112
5 TraesCS4A01G480300 chr4A 736757366 736760283 2917 False 1558.0 2883 85.7245 6 3010 2 chr4A.!!$F9 3004
6 TraesCS4A01G480300 chr4A 736409325 736412250 2925 True 1547.5 2854 85.7355 22 3012 2 chr4A.!!$R4 2990
7 TraesCS4A01G480300 chr4A 735317355 735320288 2933 False 1535.0 2822 85.7690 6 3012 2 chr4A.!!$F5 3006
8 TraesCS4A01G480300 chr4A 734481180 734482365 1185 False 1493.0 1493 89.4040 1 1199 1 chr4A.!!$F1 1198
9 TraesCS4A01G480300 chr4A 736571782 736574818 3036 False 1337.5 2447 81.0445 6 3118 2 chr4A.!!$F8 3112
10 TraesCS4A01G480300 chr4A 735748181 735751195 3014 False 1314.5 2410 81.2580 6 3086 2 chr4A.!!$F6 3080
11 TraesCS4A01G480300 chr4A 735832714 735835068 2354 False 1107.5 2017 88.0550 6 3118 2 chr4A.!!$F7 3112
12 TraesCS4A01G480300 chr4A 3359624 3360382 758 True 1033.0 1033 91.2300 3154 3914 1 chr4A.!!$R1 760
13 TraesCS4A01G480300 chr7A 6924558 6927620 3062 True 2369.0 4290 92.5445 1 3120 2 chr7A.!!$R2 3119
14 TraesCS4A01G480300 chr7A 112437691 112438451 760 True 1035.0 1035 91.2420 3154 3914 1 chr7A.!!$R1 760
15 TraesCS4A01G480300 chr7D 5645586 5648334 2748 True 2510.0 2510 83.2260 9 2779 1 chr7D.!!$R2 2770
16 TraesCS4A01G480300 chr7D 5483074 5485824 2750 True 2503.0 2503 83.1720 6 2779 1 chr7D.!!$R1 2773
17 TraesCS4A01G480300 chr7D 5445133 5448082 2949 True 2250.0 4252 90.3610 1 3012 2 chr7D.!!$R3 3011
18 TraesCS4A01G480300 chr7D 5633987 5637051 3064 True 1455.5 2639 82.7370 6 3117 2 chr7D.!!$R4 3111
19 TraesCS4A01G480300 chr5B 696443514 696444310 796 True 1288.0 1288 95.7710 3114 3914 1 chr5B.!!$R1 800
20 TraesCS4A01G480300 chr5B 124295704 124296466 762 False 1003.0 1003 90.4820 3154 3914 1 chr5B.!!$F1 760
21 TraesCS4A01G480300 chr7B 64629429 64630188 759 False 1011.0 1011 90.7190 3154 3914 1 chr7B.!!$F1 760
22 TraesCS4A01G480300 chr3D 177056526 177057285 759 True 1011.0 1011 90.6950 3154 3914 1 chr3D.!!$R1 760
23 TraesCS4A01G480300 chr5A 554818829 554819588 759 True 1005.0 1005 90.5760 3154 3914 1 chr5A.!!$R2 760
24 TraesCS4A01G480300 chr5A 554825345 554826104 759 True 994.0 994 90.3140 3154 3914 1 chr5A.!!$R3 760
25 TraesCS4A01G480300 chr5A 554812316 554813075 759 True 983.0 983 90.0520 3154 3914 1 chr5A.!!$R1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 429 1.011968 TTCGTGCGATCGAAACAGGG 61.012 55.000 21.57 4.07 44.85 4.45 F
826 868 1.490490 TCTGTTGGTGAGTTGAAGGCT 59.510 47.619 0.00 0.00 0.00 4.58 F
2071 2145 1.202245 TGACAAAACTTCACCGCTTGC 60.202 47.619 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 1918 1.850377 CACGAGACTCATCATCTGCC 58.150 55.0 2.82 0.0 0.0 4.85 R
2772 2846 0.182299 GGAGGGAGGATGGCTTCAAG 59.818 60.0 2.60 0.0 0.0 3.02 R
3454 3563 0.035739 GGTGCGGGTAAGAGGTTCAA 59.964 55.0 0.00 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
428 429 1.011968 TTCGTGCGATCGAAACAGGG 61.012 55.000 21.57 4.07 44.85 4.45
548 582 4.104261 TCCTTCATGATCTGGCAGAATCAT 59.896 41.667 22.84 23.84 34.41 2.45
562 596 5.593502 GGCAGAATCATTCTCCAAAGAAGAT 59.406 40.000 0.00 0.00 44.53 2.40
824 866 4.214971 CAGAATCTGTTGGTGAGTTGAAGG 59.785 45.833 1.31 0.00 0.00 3.46
825 867 1.967319 TCTGTTGGTGAGTTGAAGGC 58.033 50.000 0.00 0.00 0.00 4.35
826 868 1.490490 TCTGTTGGTGAGTTGAAGGCT 59.510 47.619 0.00 0.00 0.00 4.58
827 869 2.092429 TCTGTTGGTGAGTTGAAGGCTT 60.092 45.455 0.00 0.00 0.00 4.35
828 870 2.023673 TGTTGGTGAGTTGAAGGCTTG 58.976 47.619 3.46 0.00 0.00 4.01
829 871 2.297701 GTTGGTGAGTTGAAGGCTTGA 58.702 47.619 3.46 0.00 0.00 3.02
830 872 2.687935 GTTGGTGAGTTGAAGGCTTGAA 59.312 45.455 3.46 0.00 0.00 2.69
831 873 2.575532 TGGTGAGTTGAAGGCTTGAAG 58.424 47.619 3.46 0.00 0.00 3.02
861 903 8.786826 TTCGGTATTTAAACATCATCAGAACT 57.213 30.769 0.00 0.00 0.00 3.01
904 946 6.407202 AGATCATTGTGTACTCTTTACCACC 58.593 40.000 0.00 0.00 0.00 4.61
1363 1425 9.619316 TTGACGGTTACAATTCTTCAAAATATG 57.381 29.630 0.00 0.00 0.00 1.78
1385 1447 3.320826 GCAGGTTGGTTACTTGATGGTTT 59.679 43.478 0.00 0.00 35.98 3.27
2071 2145 1.202245 TGACAAAACTTCACCGCTTGC 60.202 47.619 0.00 0.00 0.00 4.01
2114 2188 3.521937 CTCAGGTCATTAGGGGGTTTACA 59.478 47.826 0.00 0.00 0.00 2.41
2281 2355 2.603110 CCACACGTGAATGGTATTCTCG 59.397 50.000 25.01 18.62 40.11 4.04
2286 2360 5.163591 ACACGTGAATGGTATTCTCGTATCA 60.164 40.000 25.01 0.00 43.73 2.15
2760 2834 5.221722 CCTCCAGCACATAAGTGTATGGTAT 60.222 44.000 18.04 0.00 46.28 2.73
2761 2835 6.247229 TCCAGCACATAAGTGTATGGTATT 57.753 37.500 18.04 0.00 46.28 1.89
2762 2836 6.054941 TCCAGCACATAAGTGTATGGTATTG 58.945 40.000 18.04 0.94 46.28 1.90
2763 2837 6.352651 TCCAGCACATAAGTGTATGGTATTGT 60.353 38.462 18.04 0.00 46.28 2.71
2764 2838 7.147637 TCCAGCACATAAGTGTATGGTATTGTA 60.148 37.037 18.04 2.58 46.28 2.41
2769 2843 9.249457 CACATAAGTGTATGGTATTGTAGTGAG 57.751 37.037 0.00 0.00 41.37 3.51
2770 2844 7.926555 ACATAAGTGTATGGTATTGTAGTGAGC 59.073 37.037 0.00 0.00 41.37 4.26
2771 2845 6.546428 AAGTGTATGGTATTGTAGTGAGCT 57.454 37.500 0.00 0.00 0.00 4.09
2772 2846 6.150396 AGTGTATGGTATTGTAGTGAGCTC 57.850 41.667 6.82 6.82 0.00 4.09
2773 2847 5.894393 AGTGTATGGTATTGTAGTGAGCTCT 59.106 40.000 16.19 0.00 0.00 4.09
2774 2848 6.381420 AGTGTATGGTATTGTAGTGAGCTCTT 59.619 38.462 16.19 5.91 0.00 2.85
2775 2849 6.477033 GTGTATGGTATTGTAGTGAGCTCTTG 59.523 42.308 16.19 0.00 0.00 3.02
2776 2850 5.939764 ATGGTATTGTAGTGAGCTCTTGA 57.060 39.130 16.19 0.00 0.00 3.02
2777 2851 5.738619 TGGTATTGTAGTGAGCTCTTGAA 57.261 39.130 16.19 1.21 0.00 2.69
2778 2852 5.724328 TGGTATTGTAGTGAGCTCTTGAAG 58.276 41.667 16.19 0.00 0.00 3.02
2787 2861 3.092851 GCTCTTGAAGCCATCCTCC 57.907 57.895 0.00 0.00 45.92 4.30
2788 2862 0.465278 GCTCTTGAAGCCATCCTCCC 60.465 60.000 0.00 0.00 45.92 4.30
2789 2863 1.211456 CTCTTGAAGCCATCCTCCCT 58.789 55.000 0.00 0.00 0.00 4.20
2790 2864 1.140652 CTCTTGAAGCCATCCTCCCTC 59.859 57.143 0.00 0.00 0.00 4.30
2791 2865 0.182299 CTTGAAGCCATCCTCCCTCC 59.818 60.000 0.00 0.00 0.00 4.30
2792 2866 0.549902 TTGAAGCCATCCTCCCTCCA 60.550 55.000 0.00 0.00 0.00 3.86
2793 2867 0.984961 TGAAGCCATCCTCCCTCCAG 60.985 60.000 0.00 0.00 0.00 3.86
2794 2868 2.336484 GAAGCCATCCTCCCTCCAGC 62.336 65.000 0.00 0.00 0.00 4.85
2795 2869 3.092511 GCCATCCTCCCTCCAGCA 61.093 66.667 0.00 0.00 0.00 4.41
2796 2870 2.914289 CCATCCTCCCTCCAGCAC 59.086 66.667 0.00 0.00 0.00 4.40
2797 2871 1.997311 CCATCCTCCCTCCAGCACA 60.997 63.158 0.00 0.00 0.00 4.57
2798 2872 1.351080 CCATCCTCCCTCCAGCACAT 61.351 60.000 0.00 0.00 0.00 3.21
2799 2873 1.427809 CATCCTCCCTCCAGCACATA 58.572 55.000 0.00 0.00 0.00 2.29
2800 2874 1.770658 CATCCTCCCTCCAGCACATAA 59.229 52.381 0.00 0.00 0.00 1.90
2801 2875 1.500474 TCCTCCCTCCAGCACATAAG 58.500 55.000 0.00 0.00 0.00 1.73
2802 2876 1.207791 CCTCCCTCCAGCACATAAGT 58.792 55.000 0.00 0.00 0.00 2.24
2809 2883 3.118261 CCTCCAGCACATAAGTGTATGGT 60.118 47.826 18.04 0.00 46.28 3.55
2810 2884 4.100963 CCTCCAGCACATAAGTGTATGGTA 59.899 45.833 18.04 8.94 46.28 3.25
2839 2919 1.074752 GCTCTTGAAGGAGAACTGCG 58.925 55.000 0.00 0.00 35.52 5.18
3087 3192 2.166254 ACTTCAAATTAATGGCAGGCGG 59.834 45.455 0.00 0.00 0.00 6.13
3124 3229 3.374745 CAGCAGCAACCTGTTGTTAAAG 58.625 45.455 11.35 0.00 43.02 1.85
3128 3233 2.032924 AGCAACCTGTTGTTAAAGACGC 59.967 45.455 11.35 0.00 42.31 5.19
3131 3236 4.606961 CAACCTGTTGTTAAAGACGCATT 58.393 39.130 1.84 0.00 34.69 3.56
3148 3253 3.689161 CGCATTTGTATTCAGGTTCAGGA 59.311 43.478 0.00 0.00 0.00 3.86
3401 3510 5.973899 TCTAGCGCTATCAATCTTCATCT 57.026 39.130 19.19 0.00 0.00 2.90
3454 3563 4.406456 TCTGGCCTCAACAACAATACATT 58.594 39.130 3.32 0.00 0.00 2.71
3518 3627 1.544982 GCCAGATCACAGATCATGGGG 60.545 57.143 18.44 11.82 30.96 4.96
3726 3840 2.092374 GCTTGAGCGATCACATGCA 58.908 52.632 1.08 0.00 37.22 3.96
3862 3977 3.763356 ACATGCGCTCGCTCTCCA 61.763 61.111 9.73 0.00 42.51 3.86
3898 4013 3.650647 GGCAAACCCATCTGTGAGA 57.349 52.632 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
426 427 1.354368 TCCCAACATCTTCAACTCCCC 59.646 52.381 0.00 0.00 0.00 4.81
428 429 2.619074 CCCTCCCAACATCTTCAACTCC 60.619 54.545 0.00 0.00 0.00 3.85
562 596 6.884295 CCTTATCATTGTCCAACCTGAAGTAA 59.116 38.462 0.00 0.00 0.00 2.24
578 612 9.965902 GGATGGTATTTCTATCACCTTATCATT 57.034 33.333 0.00 0.00 36.03 2.57
904 946 8.893219 TTATCATTTATCAGGAGTAACTGCAG 57.107 34.615 13.48 13.48 38.36 4.41
1363 1425 2.514803 ACCATCAAGTAACCAACCTGC 58.485 47.619 0.00 0.00 0.00 4.85
1844 1918 1.850377 CACGAGACTCATCATCTGCC 58.150 55.000 2.82 0.00 0.00 4.85
2009 2083 4.124238 TGAAGGAAGTGTGGTTAAAGTCG 58.876 43.478 0.00 0.00 0.00 4.18
2071 2145 4.067896 AGACACCAGCAACTTACAATGAG 58.932 43.478 0.00 0.00 0.00 2.90
2114 2188 3.169099 TCTGAAAGAGAGGTAGCAGCTT 58.831 45.455 0.00 0.00 38.67 3.74
2281 2355 4.201812 TGCGCTGCTTCTACAATTTGATAC 60.202 41.667 9.73 0.00 0.00 2.24
2286 2360 3.141002 CATGCGCTGCTTCTACAATTT 57.859 42.857 9.73 0.00 0.00 1.82
2770 2844 1.140652 GAGGGAGGATGGCTTCAAGAG 59.859 57.143 2.60 0.00 0.00 2.85
2771 2845 1.207791 GAGGGAGGATGGCTTCAAGA 58.792 55.000 2.60 0.00 0.00 3.02
2772 2846 0.182299 GGAGGGAGGATGGCTTCAAG 59.818 60.000 2.60 0.00 0.00 3.02
2773 2847 0.549902 TGGAGGGAGGATGGCTTCAA 60.550 55.000 2.60 0.00 0.00 2.69
2774 2848 0.984961 CTGGAGGGAGGATGGCTTCA 60.985 60.000 2.60 0.00 0.00 3.02
2775 2849 1.835693 CTGGAGGGAGGATGGCTTC 59.164 63.158 0.00 0.00 0.00 3.86
2776 2850 2.381941 GCTGGAGGGAGGATGGCTT 61.382 63.158 0.00 0.00 0.00 4.35
2777 2851 2.771762 GCTGGAGGGAGGATGGCT 60.772 66.667 0.00 0.00 0.00 4.75
2778 2852 3.092511 TGCTGGAGGGAGGATGGC 61.093 66.667 0.00 0.00 0.00 4.40
2779 2853 1.351080 ATGTGCTGGAGGGAGGATGG 61.351 60.000 0.00 0.00 0.00 3.51
2780 2854 1.427809 TATGTGCTGGAGGGAGGATG 58.572 55.000 0.00 0.00 0.00 3.51
2781 2855 2.053244 CTTATGTGCTGGAGGGAGGAT 58.947 52.381 0.00 0.00 0.00 3.24
2782 2856 1.273838 ACTTATGTGCTGGAGGGAGGA 60.274 52.381 0.00 0.00 0.00 3.71
2783 2857 1.134280 CACTTATGTGCTGGAGGGAGG 60.134 57.143 0.00 0.00 37.38 4.30
2784 2858 2.322355 CACTTATGTGCTGGAGGGAG 57.678 55.000 0.00 0.00 37.38 4.30
2785 2859 5.966829 CCATACACTTATGTGCTGGAGGGA 61.967 50.000 18.82 0.00 45.56 4.20
2786 2860 3.745480 CCATACACTTATGTGCTGGAGGG 60.745 52.174 18.82 7.22 45.56 4.30
2787 2861 3.118261 ACCATACACTTATGTGCTGGAGG 60.118 47.826 25.49 15.89 45.56 4.30
2788 2862 4.142609 ACCATACACTTATGTGCTGGAG 57.857 45.455 25.49 9.85 45.56 3.86
2789 2863 5.887214 ATACCATACACTTATGTGCTGGA 57.113 39.130 25.49 15.39 45.56 3.86
2795 2869 7.926555 GCTCACTACAATACCATACACTTATGT 59.073 37.037 0.00 0.00 43.30 2.29
2796 2870 8.144478 AGCTCACTACAATACCATACACTTATG 58.856 37.037 0.00 0.00 35.68 1.90
2797 2871 8.251383 AGCTCACTACAATACCATACACTTAT 57.749 34.615 0.00 0.00 0.00 1.73
2798 2872 7.560262 AGAGCTCACTACAATACCATACACTTA 59.440 37.037 17.77 0.00 0.00 2.24
2799 2873 6.381420 AGAGCTCACTACAATACCATACACTT 59.619 38.462 17.77 0.00 0.00 3.16
2800 2874 5.894393 AGAGCTCACTACAATACCATACACT 59.106 40.000 17.77 0.00 0.00 3.55
2801 2875 6.150396 AGAGCTCACTACAATACCATACAC 57.850 41.667 17.77 0.00 0.00 2.90
2802 2876 6.379988 TCAAGAGCTCACTACAATACCATACA 59.620 38.462 17.77 0.00 0.00 2.29
2803 2877 6.806751 TCAAGAGCTCACTACAATACCATAC 58.193 40.000 17.77 0.00 0.00 2.39
2804 2878 7.417911 CCTTCAAGAGCTCACTACAATACCATA 60.418 40.741 17.77 0.00 0.00 2.74
2805 2879 5.939764 TCAAGAGCTCACTACAATACCAT 57.060 39.130 17.77 0.00 0.00 3.55
2806 2880 5.337571 CCTTCAAGAGCTCACTACAATACCA 60.338 44.000 17.77 0.00 0.00 3.25
2807 2881 5.105310 TCCTTCAAGAGCTCACTACAATACC 60.105 44.000 17.77 0.00 0.00 2.73
2808 2882 5.967088 TCCTTCAAGAGCTCACTACAATAC 58.033 41.667 17.77 0.00 0.00 1.89
2809 2883 5.952347 TCTCCTTCAAGAGCTCACTACAATA 59.048 40.000 17.77 0.00 33.66 1.90
2810 2884 4.774726 TCTCCTTCAAGAGCTCACTACAAT 59.225 41.667 17.77 0.00 33.66 2.71
2839 2919 1.280421 ACTTTCTCCATCAGGTGCTCC 59.720 52.381 0.00 0.00 35.89 4.70
3124 3229 4.437390 CCTGAACCTGAATACAAATGCGTC 60.437 45.833 0.00 0.00 0.00 5.19
3128 3233 7.175641 GGGATATCCTGAACCTGAATACAAATG 59.824 40.741 21.18 0.00 35.95 2.32
3131 3236 5.911178 AGGGATATCCTGAACCTGAATACAA 59.089 40.000 21.18 0.00 46.07 2.41
3298 3406 0.319040 CATACATGGAGACCCGCGAG 60.319 60.000 8.23 0.00 34.29 5.03
3351 3459 3.205507 TGGAAGGGACTAGCTCTGATACT 59.794 47.826 0.00 0.00 38.49 2.12
3401 3510 1.822990 GAGGTGGAAGACGACATGGTA 59.177 52.381 0.00 0.00 0.00 3.25
3454 3563 0.035739 GGTGCGGGTAAGAGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3518 3627 2.093447 AGATAACCATATAGGCCAGCGC 60.093 50.000 5.01 0.00 43.14 5.92
3552 3662 5.163457 GGTGATTGTTTTGGAAGGTTCTTCA 60.163 40.000 9.48 0.00 0.00 3.02
3726 3840 3.330701 TGTTCCCTAAAGCACTCCAGATT 59.669 43.478 0.00 0.00 0.00 2.40
3892 4007 3.772387 AGGAGATGAGTTCTGTCTCACA 58.228 45.455 13.28 0.00 45.40 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.