Multiple sequence alignment - TraesCS4A01G479400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G479400 chr4A 100.000 5853 0 0 1 5853 736146293 736152145 0.000000e+00 10809.0
1 TraesCS4A01G479400 chr4A 86.937 4953 571 35 1 4929 735002436 735007336 0.000000e+00 5493.0
2 TraesCS4A01G479400 chr4A 85.653 3980 518 31 974 4920 735316290 735320249 0.000000e+00 4137.0
3 TraesCS4A01G479400 chr4A 84.846 4164 566 38 803 4930 734584941 734589075 0.000000e+00 4133.0
4 TraesCS4A01G479400 chr4A 85.135 4070 546 32 873 4922 735488074 735484044 0.000000e+00 4109.0
5 TraesCS4A01G479400 chr4A 85.157 4002 515 48 973 4922 735562732 735558758 0.000000e+00 4026.0
6 TraesCS4A01G479400 chr4A 84.710 4068 562 37 884 4922 736756214 736760250 0.000000e+00 4012.0
7 TraesCS4A01G479400 chr4A 85.170 3938 505 35 1038 4925 736884006 736887914 0.000000e+00 3964.0
8 TraesCS4A01G479400 chr4A 84.362 4003 563 37 969 4934 734385153 734389129 0.000000e+00 3866.0
9 TraesCS4A01G479400 chr4A 83.922 4074 568 59 896 4925 734730569 734734599 0.000000e+00 3814.0
10 TraesCS4A01G479400 chr4A 83.726 4074 578 57 896 4925 736570643 736574675 0.000000e+00 3771.0
11 TraesCS4A01G479400 chr4A 83.706 4075 570 54 884 4918 735818599 735822619 0.000000e+00 3760.0
12 TraesCS4A01G479400 chr4A 84.253 3861 545 37 1118 4937 736470575 736466737 0.000000e+00 3703.0
13 TraesCS4A01G479400 chr4A 83.915 3525 506 41 1442 4930 735689506 735693005 0.000000e+00 3312.0
14 TraesCS4A01G479400 chr4A 86.591 2461 273 28 873 3311 734582507 734584932 0.000000e+00 2663.0
15 TraesCS4A01G479400 chr4A 88.539 890 66 18 1 871 734581535 734582407 0.000000e+00 1046.0
16 TraesCS4A01G479400 chr4A 85.745 470 60 5 377 844 735488702 735488238 1.900000e-134 490.0
17 TraesCS4A01G479400 chr4A 86.433 457 49 10 416 868 736823461 736823908 6.820000e-134 488.0
18 TraesCS4A01G479400 chr4A 84.910 391 44 11 5043 5429 736906640 736907019 1.190000e-101 381.0
19 TraesCS4A01G479400 chr4A 84.078 358 42 8 5046 5397 735835249 735835597 1.220000e-86 331.0
20 TraesCS4A01G479400 chr4A 85.930 199 18 6 165 357 735488887 735488693 2.770000e-48 204.0
21 TraesCS4A01G479400 chr4A 97.059 34 1 0 5354 5387 734589892 734589925 2.280000e-04 58.4
22 TraesCS4A01G479400 chr4A 100.000 28 0 0 5356 5383 735752028 735752055 1.100000e-02 52.8
23 TraesCS4A01G479400 chr7D 97.392 2684 59 4 2248 4930 5665585 5662912 0.000000e+00 4558.0
24 TraesCS4A01G479400 chr7D 85.363 4065 543 36 873 4904 5649508 5645463 0.000000e+00 4163.0
25 TraesCS4A01G479400 chr7D 84.435 4009 549 43 977 4930 5638108 5634120 0.000000e+00 3877.0
26 TraesCS4A01G479400 chr7D 84.241 3636 515 45 1326 4928 5486537 5482927 0.000000e+00 3487.0
27 TraesCS4A01G479400 chr7D 82.915 2827 420 41 2124 4929 5459031 5456247 0.000000e+00 2486.0
28 TraesCS4A01G479400 chr7D 91.716 676 52 4 503 1177 5778274 5777602 0.000000e+00 935.0
29 TraesCS4A01G479400 chr7D 89.607 712 52 10 165 873 5650341 5649649 0.000000e+00 885.0
30 TraesCS4A01G479400 chr7D 86.645 307 24 7 568 873 5464811 5464521 2.030000e-84 324.0
31 TraesCS4A01G479400 chr7D 87.778 270 9 9 4930 5177 5662774 5662507 1.600000e-75 294.0
32 TraesCS4A01G479400 chr7D 90.050 201 10 5 381 581 5465150 5464960 9.740000e-63 252.0
33 TraesCS4A01G479400 chr7D 91.713 181 12 1 5305 5482 5662480 5662300 1.260000e-61 248.0
34 TraesCS4A01G479400 chr7D 87.845 181 11 3 1 170 5650551 5650371 9.950000e-48 202.0
35 TraesCS4A01G479400 chr7D 85.484 186 5 9 5558 5730 5662219 5662043 2.170000e-39 174.0
36 TraesCS4A01G479400 chr7D 97.059 34 1 0 5354 5387 5522564 5522531 2.280000e-04 58.4
37 TraesCS4A01G479400 chr7A 84.938 4010 527 51 977 4937 6928678 6924697 0.000000e+00 3988.0
38 TraesCS4A01G479400 chr7A 84.459 3925 526 45 1038 4918 7322285 7318401 0.000000e+00 3792.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G479400 chr4A 736146293 736152145 5852 False 10809.0 10809 100.000000 1 5853 1 chr4A.!!$F9 5852
1 TraesCS4A01G479400 chr4A 735002436 735007336 4900 False 5493.0 5493 86.937000 1 4929 1 chr4A.!!$F3 4928
2 TraesCS4A01G479400 chr4A 735316290 735320249 3959 False 4137.0 4137 85.653000 974 4920 1 chr4A.!!$F4 3946
3 TraesCS4A01G479400 chr4A 735558758 735562732 3974 True 4026.0 4026 85.157000 973 4922 1 chr4A.!!$R1 3949
4 TraesCS4A01G479400 chr4A 736756214 736760250 4036 False 4012.0 4012 84.710000 884 4922 1 chr4A.!!$F11 4038
5 TraesCS4A01G479400 chr4A 736884006 736887914 3908 False 3964.0 3964 85.170000 1038 4925 1 chr4A.!!$F13 3887
6 TraesCS4A01G479400 chr4A 734385153 734389129 3976 False 3866.0 3866 84.362000 969 4934 1 chr4A.!!$F1 3965
7 TraesCS4A01G479400 chr4A 734730569 734734599 4030 False 3814.0 3814 83.922000 896 4925 1 chr4A.!!$F2 4029
8 TraesCS4A01G479400 chr4A 736570643 736574675 4032 False 3771.0 3771 83.726000 896 4925 1 chr4A.!!$F10 4029
9 TraesCS4A01G479400 chr4A 735818599 735822619 4020 False 3760.0 3760 83.706000 884 4918 1 chr4A.!!$F7 4034
10 TraesCS4A01G479400 chr4A 736466737 736470575 3838 True 3703.0 3703 84.253000 1118 4937 1 chr4A.!!$R2 3819
11 TraesCS4A01G479400 chr4A 735689506 735693005 3499 False 3312.0 3312 83.915000 1442 4930 1 chr4A.!!$F5 3488
12 TraesCS4A01G479400 chr4A 734581535 734589925 8390 False 1975.1 4133 89.258750 1 5387 4 chr4A.!!$F15 5386
13 TraesCS4A01G479400 chr4A 735484044 735488887 4843 True 1601.0 4109 85.603333 165 4922 3 chr4A.!!$R3 4757
14 TraesCS4A01G479400 chr7D 5634120 5638108 3988 True 3877.0 3877 84.435000 977 4930 1 chr7D.!!$R4 3953
15 TraesCS4A01G479400 chr7D 5482927 5486537 3610 True 3487.0 3487 84.241000 1326 4928 1 chr7D.!!$R2 3602
16 TraesCS4A01G479400 chr7D 5456247 5459031 2784 True 2486.0 2486 82.915000 2124 4929 1 chr7D.!!$R1 2805
17 TraesCS4A01G479400 chr7D 5645463 5650551 5088 True 1750.0 4163 87.605000 1 4904 3 chr7D.!!$R7 4903
18 TraesCS4A01G479400 chr7D 5662043 5665585 3542 True 1318.5 4558 90.591750 2248 5730 4 chr7D.!!$R8 3482
19 TraesCS4A01G479400 chr7D 5777602 5778274 672 True 935.0 935 91.716000 503 1177 1 chr7D.!!$R5 674
20 TraesCS4A01G479400 chr7D 5464521 5465150 629 True 288.0 324 88.347500 381 873 2 chr7D.!!$R6 492
21 TraesCS4A01G479400 chr7A 6924697 6928678 3981 True 3988.0 3988 84.938000 977 4937 1 chr7A.!!$R1 3960
22 TraesCS4A01G479400 chr7A 7318401 7322285 3884 True 3792.0 3792 84.459000 1038 4918 1 chr7A.!!$R2 3880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 224 1.214325 TGGATACAGTGTGCGGACG 59.786 57.895 5.88 0.00 46.17 4.79 F
438 492 1.396301 GCTGCTTCTCATTTCCTCGTG 59.604 52.381 0.00 0.00 0.00 4.35 F
1446 4366 0.113190 AGGCTACCTTGGCAAAAGCT 59.887 50.000 21.15 10.08 33.67 3.74 F
1929 4868 0.668535 GGTTTGAACCTGGCAGTGAC 59.331 55.000 14.43 4.54 45.75 3.67 F
2469 5430 0.038744 AAGATGTTGGGAGCAGGGTG 59.961 55.000 0.00 0.00 0.00 4.61 F
3322 6369 1.314534 TGATGCCACCGCCTCAATTG 61.315 55.000 0.00 0.00 36.79 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1105 1506 0.541392 TGGAGCTCACGTGCCATATT 59.459 50.000 17.19 0.00 0.00 1.28 R
1495 4421 0.957395 GCTGATGGTATGATGGGGCG 60.957 60.000 0.00 0.00 0.00 6.13 R
2318 5279 1.023513 GCACCTCTGCAGACATGGAC 61.024 60.000 23.41 12.92 43.62 4.02 R
2973 5998 4.610680 GCCTTTTAATATGCCGTAGCTTCG 60.611 45.833 5.67 5.67 40.80 3.79 R
4083 7139 1.739562 GACCTGAGACGCCAGCAAG 60.740 63.158 0.00 0.00 32.97 4.01 R
4936 8205 0.676782 GCACCGGCCAATGAAGTAGT 60.677 55.000 0.00 0.00 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 1.754226 GTTTGGCTTCTGGAACCACAA 59.246 47.619 0.00 0.00 31.83 3.33
71 73 2.665165 TCTGGAACCACAATTGCTGTT 58.335 42.857 5.05 9.08 35.47 3.16
131 133 4.555709 AACGGCGTGCCCAACTCA 62.556 61.111 15.70 0.00 0.00 3.41
177 224 1.214325 TGGATACAGTGTGCGGACG 59.786 57.895 5.88 0.00 46.17 4.79
438 492 1.396301 GCTGCTTCTCATTTCCTCGTG 59.604 52.381 0.00 0.00 0.00 4.35
467 521 2.102252 GCTCACCACTAATCTCCTCTGG 59.898 54.545 0.00 0.00 0.00 3.86
582 823 5.470098 GGTGTTCATCCGTTGCTATATTCAT 59.530 40.000 0.00 0.00 0.00 2.57
588 829 7.220740 TCATCCGTTGCTATATTCATTGGTTA 58.779 34.615 0.00 0.00 0.00 2.85
606 847 4.717778 TGGTTATTTCTACCTCCGATCCAA 59.282 41.667 0.00 0.00 36.60 3.53
616 857 2.095059 CCTCCGATCCAAAAGCACTTTG 60.095 50.000 0.00 4.70 43.56 2.77
620 861 5.007034 TCCGATCCAAAAGCACTTTGATTA 58.993 37.500 11.67 0.16 46.35 1.75
626 867 6.738114 TCCAAAAGCACTTTGATTACTCTTG 58.262 36.000 11.67 0.00 46.35 3.02
697 939 9.007901 ACTTTTTGCCATTATCTATAGATCTGC 57.992 33.333 18.59 15.88 36.05 4.26
723 965 2.623416 CCAGCGGGTTTCTCTTTTCTTT 59.377 45.455 0.00 0.00 0.00 2.52
915 1303 6.758254 ACCTGTTTCCCATAATTTGTCTTTG 58.242 36.000 0.00 0.00 0.00 2.77
933 1321 6.183361 TGTCTTTGTACACCCAAGATCTGTTA 60.183 38.462 10.80 0.00 0.00 2.41
1105 1506 2.547218 GCTTCAACGTACCTTGGAGTGA 60.547 50.000 12.70 0.00 30.23 3.41
1290 4195 0.839946 ATAACCTCCTCAAGCGCCAT 59.160 50.000 2.29 0.00 0.00 4.40
1435 4355 5.441718 TCTGAATGAATTGAAGGCTACCT 57.558 39.130 0.00 0.00 33.87 3.08
1446 4366 0.113190 AGGCTACCTTGGCAAAAGCT 59.887 50.000 21.15 10.08 33.67 3.74
1723 4661 9.589111 TTTACAATGACAAAAGGGTAAAAGAAC 57.411 29.630 0.00 0.00 30.42 3.01
1855 4794 1.078709 TGATACTCTGCAACGCAAGC 58.921 50.000 0.00 0.00 38.41 4.01
1860 4799 2.180131 CTCTGCAACGCAAGCTGTCC 62.180 60.000 0.00 0.00 38.41 4.02
1867 4806 2.113860 ACGCAAGCTGTCCAACATAT 57.886 45.000 0.00 0.00 45.62 1.78
1929 4868 0.668535 GGTTTGAACCTGGCAGTGAC 59.331 55.000 14.43 4.54 45.75 3.67
2004 4944 6.725246 CAAAGTTTTGGTAACTTCTCGACAT 58.275 36.000 3.63 0.00 39.36 3.06
2009 4949 9.886132 AGTTTTGGTAACTTCTCGACATAATAT 57.114 29.630 0.00 0.00 37.61 1.28
2061 5010 5.765182 GTGTCCTCTGGAAAAGATGAAAGAA 59.235 40.000 0.00 0.00 32.13 2.52
2086 5035 4.464008 TCAGTTCTTGGCACTCTTCAAAT 58.536 39.130 0.00 0.00 0.00 2.32
2114 5063 4.943705 TGCATTCTCTGGACCAGAAATTAC 59.056 41.667 24.34 17.97 40.18 1.89
2298 5259 2.499289 TGATCCCTTGAGAGCTCTGTTC 59.501 50.000 23.91 11.12 0.00 3.18
2318 5279 6.936279 TGTTCTGGAGTTATGAGAAGTTAGG 58.064 40.000 0.00 0.00 0.00 2.69
2463 5424 1.280421 AGAGTGGAAGATGTTGGGAGC 59.720 52.381 0.00 0.00 0.00 4.70
2464 5425 1.003580 GAGTGGAAGATGTTGGGAGCA 59.996 52.381 0.00 0.00 0.00 4.26
2465 5426 1.004044 AGTGGAAGATGTTGGGAGCAG 59.996 52.381 0.00 0.00 0.00 4.24
2466 5427 0.329261 TGGAAGATGTTGGGAGCAGG 59.671 55.000 0.00 0.00 0.00 4.85
2467 5428 0.394899 GGAAGATGTTGGGAGCAGGG 60.395 60.000 0.00 0.00 0.00 4.45
2468 5429 0.329596 GAAGATGTTGGGAGCAGGGT 59.670 55.000 0.00 0.00 0.00 4.34
2469 5430 0.038744 AAGATGTTGGGAGCAGGGTG 59.961 55.000 0.00 0.00 0.00 4.61
2926 5951 5.989777 TCTTTACCACTTGCAGTTACTTCTC 59.010 40.000 0.00 0.00 0.00 2.87
2973 5998 7.435068 TGCCTGAGAAACTCTGTAATTTAAC 57.565 36.000 0.00 0.00 0.00 2.01
3320 6367 1.452651 CTGATGCCACCGCCTCAAT 60.453 57.895 0.00 0.00 38.89 2.57
3322 6369 1.314534 TGATGCCACCGCCTCAATTG 61.315 55.000 0.00 0.00 36.79 2.32
4083 7139 1.820519 TGGCAGCTTGGTCATCAAATC 59.179 47.619 0.00 0.00 34.56 2.17
4454 7510 2.556189 CTCATCCCGGAGTGTATCTCAG 59.444 54.545 0.73 0.00 44.40 3.35
4516 7572 6.701340 TGTAATACTCAACAACATGCTCTCT 58.299 36.000 0.00 0.00 0.00 3.10
4936 8205 5.305585 CCTTTGCACTCTTAAAGGTGTCTA 58.694 41.667 4.69 0.00 44.97 2.59
4945 8214 8.524487 CACTCTTAAAGGTGTCTACTACTTCAT 58.476 37.037 0.00 0.00 0.00 2.57
4972 8241 2.423898 GCTGATTCCCTCGGTCGGA 61.424 63.158 0.00 0.00 32.34 4.55
5039 8313 3.644606 CTGTCCCTGCTGCCACCT 61.645 66.667 0.00 0.00 0.00 4.00
5040 8314 3.618780 CTGTCCCTGCTGCCACCTC 62.619 68.421 0.00 0.00 0.00 3.85
5041 8315 3.640407 GTCCCTGCTGCCACCTCA 61.640 66.667 0.00 0.00 0.00 3.86
5053 8348 3.058160 ACCTCATGCGTTGCCAGC 61.058 61.111 0.00 0.00 0.00 4.85
5118 8425 6.183360 TGTCTAATTTGCATCCCGTTATTGTC 60.183 38.462 0.00 0.00 0.00 3.18
5144 8451 1.065126 GTTCTGCCAGCCTATCCTTGT 60.065 52.381 0.00 0.00 0.00 3.16
5149 8456 2.509548 TGCCAGCCTATCCTTGTGTATT 59.490 45.455 0.00 0.00 0.00 1.89
5150 8457 3.142174 GCCAGCCTATCCTTGTGTATTC 58.858 50.000 0.00 0.00 0.00 1.75
5151 8458 3.433598 GCCAGCCTATCCTTGTGTATTCA 60.434 47.826 0.00 0.00 0.00 2.57
5177 8484 5.945784 AGTACTTTGTGTGCATGGATTGTAT 59.054 36.000 0.00 0.00 33.54 2.29
5179 8486 6.100404 ACTTTGTGTGCATGGATTGTATTT 57.900 33.333 0.00 0.00 0.00 1.40
5180 8487 6.523840 ACTTTGTGTGCATGGATTGTATTTT 58.476 32.000 0.00 0.00 0.00 1.82
5205 8513 7.744087 TTTAATGTCTTGTGTGCTCTTACAT 57.256 32.000 0.00 0.00 32.43 2.29
5206 8514 8.840833 TTTAATGTCTTGTGTGCTCTTACATA 57.159 30.769 0.00 0.00 32.43 2.29
5209 8517 4.283467 TGTCTTGTGTGCTCTTACATACCT 59.717 41.667 0.00 0.00 31.24 3.08
5210 8518 4.865365 GTCTTGTGTGCTCTTACATACCTC 59.135 45.833 0.00 0.00 31.24 3.85
5211 8519 4.772624 TCTTGTGTGCTCTTACATACCTCT 59.227 41.667 0.00 0.00 31.24 3.69
5212 8520 5.949952 TCTTGTGTGCTCTTACATACCTCTA 59.050 40.000 0.00 0.00 31.24 2.43
5213 8521 5.836821 TGTGTGCTCTTACATACCTCTAG 57.163 43.478 0.00 0.00 31.24 2.43
5215 8523 6.129874 TGTGTGCTCTTACATACCTCTAGAT 58.870 40.000 0.00 0.00 31.24 1.98
5216 8524 7.287810 TGTGTGCTCTTACATACCTCTAGATA 58.712 38.462 0.00 0.00 31.24 1.98
5217 8525 7.778382 TGTGTGCTCTTACATACCTCTAGATAA 59.222 37.037 0.00 0.00 31.24 1.75
5222 8560 9.632807 GCTCTTACATACCTCTAGATAAATGTG 57.367 37.037 17.67 7.71 0.00 3.21
5225 8563 9.613957 CTTACATACCTCTAGATAAATGTGACG 57.386 37.037 17.67 7.54 0.00 4.35
5230 8568 5.069251 ACCTCTAGATAAATGTGACGGAAGG 59.931 44.000 0.00 0.00 0.00 3.46
5243 8581 4.626172 GTGACGGAAGGTCTCTTTTATCAC 59.374 45.833 0.00 0.00 46.24 3.06
5249 8587 6.103330 GGAAGGTCTCTTTTATCACTCACTC 58.897 44.000 0.00 0.00 32.52 3.51
5250 8588 6.071051 GGAAGGTCTCTTTTATCACTCACTCT 60.071 42.308 0.00 0.00 32.52 3.24
5251 8589 6.279513 AGGTCTCTTTTATCACTCACTCTG 57.720 41.667 0.00 0.00 0.00 3.35
5252 8590 5.777732 AGGTCTCTTTTATCACTCACTCTGT 59.222 40.000 0.00 0.00 0.00 3.41
5253 8591 6.948886 AGGTCTCTTTTATCACTCACTCTGTA 59.051 38.462 0.00 0.00 0.00 2.74
5255 8593 8.254508 GGTCTCTTTTATCACTCACTCTGTAAT 58.745 37.037 0.00 0.00 0.00 1.89
5256 8594 9.081997 GTCTCTTTTATCACTCACTCTGTAATG 57.918 37.037 0.00 0.00 0.00 1.90
5257 8595 9.025041 TCTCTTTTATCACTCACTCTGTAATGA 57.975 33.333 0.00 0.00 0.00 2.57
5258 8596 9.299963 CTCTTTTATCACTCACTCTGTAATGAG 57.700 37.037 0.00 0.00 46.49 2.90
5259 8597 9.025041 TCTTTTATCACTCACTCTGTAATGAGA 57.975 33.333 8.18 0.00 44.32 3.27
5260 8598 9.299963 CTTTTATCACTCACTCTGTAATGAGAG 57.700 37.037 8.18 0.00 44.32 3.20
5292 8631 5.133941 TGTATTGCAGTACTTGGGTTTCAA 58.866 37.500 18.79 0.00 0.00 2.69
5295 8634 3.626930 TGCAGTACTTGGGTTTCAAACT 58.373 40.909 0.00 0.00 34.56 2.66
5298 8637 4.097286 GCAGTACTTGGGTTTCAAACTTGA 59.903 41.667 0.00 0.00 34.56 3.02
5299 8638 5.393678 GCAGTACTTGGGTTTCAAACTTGAA 60.394 40.000 0.00 0.69 44.78 2.69
5337 8677 1.312371 TGGCTATTTCCCTTGCACGC 61.312 55.000 0.00 0.00 0.00 5.34
5369 8712 8.506168 TTTTGTTGGTATAGATAGAAAGCCTG 57.494 34.615 0.00 0.00 0.00 4.85
5413 8757 4.808558 TGTGCTGTGATTATTTTTCCAGC 58.191 39.130 0.00 0.00 44.16 4.85
5437 8781 3.563390 GCTCATTCCCTGCTCTGTTTATC 59.437 47.826 0.00 0.00 0.00 1.75
5465 8809 7.548097 TCTCATGTACTACAAATGAGGACTTC 58.452 38.462 16.09 0.00 44.84 3.01
5483 8827 8.429237 AGGACTTCCATATATAGTGAGAAAGG 57.571 38.462 0.00 0.00 38.89 3.11
5485 8829 6.692486 ACTTCCATATATAGTGAGAAAGGCG 58.308 40.000 0.00 0.00 0.00 5.52
5486 8830 6.267928 ACTTCCATATATAGTGAGAAAGGCGT 59.732 38.462 0.00 0.00 0.00 5.68
5487 8831 6.025749 TCCATATATAGTGAGAAAGGCGTG 57.974 41.667 0.00 0.00 0.00 5.34
5488 8832 5.773176 TCCATATATAGTGAGAAAGGCGTGA 59.227 40.000 0.00 0.00 0.00 4.35
5489 8833 6.266786 TCCATATATAGTGAGAAAGGCGTGAA 59.733 38.462 0.00 0.00 0.00 3.18
5490 8834 6.587990 CCATATATAGTGAGAAAGGCGTGAAG 59.412 42.308 0.00 0.00 0.00 3.02
5507 8907 4.330074 CGTGAAGAGGCTTATACTGTTTGG 59.670 45.833 0.00 0.00 0.00 3.28
5508 8908 5.246307 GTGAAGAGGCTTATACTGTTTGGT 58.754 41.667 0.00 0.00 0.00 3.67
5509 8909 5.122396 GTGAAGAGGCTTATACTGTTTGGTG 59.878 44.000 0.00 0.00 0.00 4.17
5510 8910 3.610911 AGAGGCTTATACTGTTTGGTGC 58.389 45.455 0.00 0.00 0.00 5.01
5511 8911 3.009033 AGAGGCTTATACTGTTTGGTGCA 59.991 43.478 0.00 0.00 0.00 4.57
5512 8912 3.081804 AGGCTTATACTGTTTGGTGCAC 58.918 45.455 8.80 8.80 0.00 4.57
5513 8913 2.817258 GGCTTATACTGTTTGGTGCACA 59.183 45.455 20.43 1.62 0.00 4.57
5514 8914 3.254657 GGCTTATACTGTTTGGTGCACAA 59.745 43.478 20.43 3.78 37.28 3.33
5515 8915 4.082245 GGCTTATACTGTTTGGTGCACAAT 60.082 41.667 20.43 0.00 39.21 2.71
5516 8916 5.469479 GCTTATACTGTTTGGTGCACAATT 58.531 37.500 20.43 0.00 39.21 2.32
5517 8917 5.925969 GCTTATACTGTTTGGTGCACAATTT 59.074 36.000 20.43 0.00 39.21 1.82
5518 8918 6.128849 GCTTATACTGTTTGGTGCACAATTTG 60.129 38.462 20.43 6.32 39.21 2.32
5519 8919 2.903798 ACTGTTTGGTGCACAATTTGG 58.096 42.857 20.43 6.83 39.21 3.28
5520 8920 2.235898 ACTGTTTGGTGCACAATTTGGT 59.764 40.909 20.43 7.48 39.21 3.67
5521 8921 3.269178 CTGTTTGGTGCACAATTTGGTT 58.731 40.909 20.43 0.00 39.21 3.67
5522 8922 3.265791 TGTTTGGTGCACAATTTGGTTC 58.734 40.909 20.43 0.00 39.21 3.62
5523 8923 2.611225 TTGGTGCACAATTTGGTTCC 57.389 45.000 20.43 0.00 33.18 3.62
5524 8924 0.755686 TGGTGCACAATTTGGTTCCC 59.244 50.000 20.43 0.00 0.00 3.97
5525 8925 1.047801 GGTGCACAATTTGGTTCCCT 58.952 50.000 20.43 0.00 0.00 4.20
5526 8926 1.270252 GGTGCACAATTTGGTTCCCTG 60.270 52.381 20.43 0.00 0.00 4.45
5527 8927 0.392336 TGCACAATTTGGTTCCCTGC 59.608 50.000 0.78 1.27 0.00 4.85
5528 8928 0.681175 GCACAATTTGGTTCCCTGCT 59.319 50.000 0.78 0.00 0.00 4.24
5529 8929 1.337167 GCACAATTTGGTTCCCTGCTC 60.337 52.381 0.78 0.00 0.00 4.26
5530 8930 1.962807 CACAATTTGGTTCCCTGCTCA 59.037 47.619 0.78 0.00 0.00 4.26
5531 8931 2.029649 CACAATTTGGTTCCCTGCTCAG 60.030 50.000 0.78 0.00 0.00 3.35
5532 8932 2.242043 CAATTTGGTTCCCTGCTCAGT 58.758 47.619 0.00 0.00 0.00 3.41
5533 8933 2.629617 CAATTTGGTTCCCTGCTCAGTT 59.370 45.455 0.00 0.00 0.00 3.16
5534 8934 2.452600 TTTGGTTCCCTGCTCAGTTT 57.547 45.000 0.00 0.00 0.00 2.66
5535 8935 2.452600 TTGGTTCCCTGCTCAGTTTT 57.547 45.000 0.00 0.00 0.00 2.43
5536 8936 1.981256 TGGTTCCCTGCTCAGTTTTC 58.019 50.000 0.00 0.00 0.00 2.29
5537 8937 1.248486 GGTTCCCTGCTCAGTTTTCC 58.752 55.000 0.00 0.00 0.00 3.13
5538 8938 0.875059 GTTCCCTGCTCAGTTTTCCG 59.125 55.000 0.00 0.00 0.00 4.30
5539 8939 0.250727 TTCCCTGCTCAGTTTTCCGG 60.251 55.000 0.00 0.00 0.00 5.14
5540 8940 2.335712 CCCTGCTCAGTTTTCCGGC 61.336 63.158 0.00 0.00 0.00 6.13
5541 8941 1.302832 CCTGCTCAGTTTTCCGGCT 60.303 57.895 0.00 0.00 0.00 5.52
5542 8942 0.890996 CCTGCTCAGTTTTCCGGCTT 60.891 55.000 0.00 0.00 0.00 4.35
5543 8943 1.610624 CCTGCTCAGTTTTCCGGCTTA 60.611 52.381 0.00 0.00 0.00 3.09
5544 8944 1.464997 CTGCTCAGTTTTCCGGCTTAC 59.535 52.381 0.00 0.00 0.00 2.34
5545 8945 0.442699 GCTCAGTTTTCCGGCTTACG 59.557 55.000 0.00 0.00 43.80 3.18
5546 8946 1.792006 CTCAGTTTTCCGGCTTACGT 58.208 50.000 0.00 0.00 42.24 3.57
5547 8947 2.927871 GCTCAGTTTTCCGGCTTACGTA 60.928 50.000 0.00 0.00 42.24 3.57
5548 8948 3.319755 CTCAGTTTTCCGGCTTACGTAA 58.680 45.455 7.94 7.94 42.24 3.18
5549 8949 3.319755 TCAGTTTTCCGGCTTACGTAAG 58.680 45.455 27.37 27.37 42.24 2.34
5550 8950 2.414138 CAGTTTTCCGGCTTACGTAAGG 59.586 50.000 30.94 18.91 46.39 2.69
5551 8951 1.733912 GTTTTCCGGCTTACGTAAGGG 59.266 52.381 30.94 24.76 46.39 3.95
5552 8952 1.265236 TTTCCGGCTTACGTAAGGGA 58.735 50.000 30.94 26.29 46.39 4.20
5553 8953 1.265236 TTCCGGCTTACGTAAGGGAA 58.735 50.000 28.13 28.13 46.39 3.97
5554 8954 0.819582 TCCGGCTTACGTAAGGGAAG 59.180 55.000 30.94 13.28 46.39 3.46
5555 8955 0.533951 CCGGCTTACGTAAGGGAAGT 59.466 55.000 30.94 0.00 46.39 3.01
5556 8956 1.750778 CCGGCTTACGTAAGGGAAGTA 59.249 52.381 30.94 0.00 46.39 2.24
5557 8957 2.223665 CCGGCTTACGTAAGGGAAGTAG 60.224 54.545 30.94 9.52 46.39 2.57
5607 9007 5.467399 CAGTGGAAATGTGCATGAAAAATGT 59.533 36.000 0.00 0.00 0.00 2.71
5608 9008 5.467399 AGTGGAAATGTGCATGAAAAATGTG 59.533 36.000 0.00 0.00 0.00 3.21
5609 9009 4.755629 TGGAAATGTGCATGAAAAATGTGG 59.244 37.500 0.00 0.00 0.00 4.17
5610 9010 4.154556 GGAAATGTGCATGAAAAATGTGGG 59.845 41.667 0.00 0.00 0.00 4.61
5611 9011 4.354893 AATGTGCATGAAAAATGTGGGT 57.645 36.364 0.00 0.00 0.00 4.51
5612 9012 5.480642 AATGTGCATGAAAAATGTGGGTA 57.519 34.783 0.00 0.00 0.00 3.69
5613 9013 5.680594 ATGTGCATGAAAAATGTGGGTAT 57.319 34.783 0.00 0.00 0.00 2.73
5614 9014 4.818642 TGTGCATGAAAAATGTGGGTATG 58.181 39.130 0.00 0.00 0.00 2.39
5615 9015 3.618150 GTGCATGAAAAATGTGGGTATGC 59.382 43.478 0.00 0.00 39.72 3.14
5616 9016 3.514706 TGCATGAAAAATGTGGGTATGCT 59.485 39.130 0.00 0.00 39.91 3.79
5619 9019 2.233431 TGAAAAATGTGGGTATGCTGGC 59.767 45.455 0.00 0.00 0.00 4.85
5626 9026 2.190578 GGTATGCTGGCTCGGCTT 59.809 61.111 7.40 4.19 36.58 4.35
5663 9071 2.423947 GGATGATGGCAGATGGGAAACT 60.424 50.000 0.00 0.00 0.00 2.66
5666 9074 4.524802 TGATGGCAGATGGGAAACTAAT 57.475 40.909 0.00 0.00 0.00 1.73
5730 9143 5.159273 TGTGTGGTTATGCTATGAAGACA 57.841 39.130 0.00 0.00 0.00 3.41
5731 9144 5.744171 TGTGTGGTTATGCTATGAAGACAT 58.256 37.500 0.00 0.00 40.16 3.06
5732 9145 6.179756 TGTGTGGTTATGCTATGAAGACATT 58.820 36.000 0.00 0.00 37.87 2.71
5733 9146 7.334858 TGTGTGGTTATGCTATGAAGACATTA 58.665 34.615 0.00 0.00 37.87 1.90
5734 9147 7.826744 TGTGTGGTTATGCTATGAAGACATTAA 59.173 33.333 0.00 0.00 37.87 1.40
5735 9148 8.840321 GTGTGGTTATGCTATGAAGACATTAAT 58.160 33.333 0.00 0.00 37.87 1.40
5736 9149 9.407380 TGTGGTTATGCTATGAAGACATTAATT 57.593 29.630 0.00 0.00 37.87 1.40
5744 9157 9.851686 TGCTATGAAGACATTAATTTATCCTGT 57.148 29.630 0.00 0.00 37.87 4.00
5748 9161 9.911788 ATGAAGACATTAATTTATCCTGTCACT 57.088 29.630 6.04 0.00 38.90 3.41
5749 9162 9.166173 TGAAGACATTAATTTATCCTGTCACTG 57.834 33.333 6.04 0.00 38.90 3.66
5750 9163 9.383519 GAAGACATTAATTTATCCTGTCACTGA 57.616 33.333 6.04 0.00 38.90 3.41
5751 9164 9.739276 AAGACATTAATTTATCCTGTCACTGAA 57.261 29.630 6.04 0.00 38.90 3.02
5752 9165 9.911788 AGACATTAATTTATCCTGTCACTGAAT 57.088 29.630 6.04 0.00 38.90 2.57
5759 9172 7.827819 TTTATCCTGTCACTGAATTCTTACG 57.172 36.000 7.05 0.00 0.00 3.18
5760 9173 5.661056 ATCCTGTCACTGAATTCTTACGA 57.339 39.130 7.05 0.00 0.00 3.43
5761 9174 5.462530 TCCTGTCACTGAATTCTTACGAA 57.537 39.130 7.05 0.00 0.00 3.85
5762 9175 6.037786 TCCTGTCACTGAATTCTTACGAAT 57.962 37.500 7.05 0.00 41.53 3.34
5764 9177 7.608153 TCCTGTCACTGAATTCTTACGAATTA 58.392 34.615 7.14 0.00 46.87 1.40
5765 9178 7.544566 TCCTGTCACTGAATTCTTACGAATTAC 59.455 37.037 7.14 3.15 46.87 1.89
5766 9179 7.330946 CCTGTCACTGAATTCTTACGAATTACA 59.669 37.037 7.14 7.00 46.87 2.41
5767 9180 8.239681 TGTCACTGAATTCTTACGAATTACAG 57.760 34.615 20.17 20.17 46.87 2.74
5768 9181 7.330946 TGTCACTGAATTCTTACGAATTACAGG 59.669 37.037 22.77 16.75 46.87 4.00
5769 9182 7.544566 GTCACTGAATTCTTACGAATTACAGGA 59.455 37.037 22.77 17.82 46.87 3.86
5770 9183 7.544566 TCACTGAATTCTTACGAATTACAGGAC 59.455 37.037 22.77 8.98 46.87 3.85
5771 9184 6.817140 ACTGAATTCTTACGAATTACAGGACC 59.183 38.462 22.77 8.51 46.87 4.46
5772 9185 6.942976 TGAATTCTTACGAATTACAGGACCT 58.057 36.000 7.14 0.00 46.87 3.85
5773 9186 6.816640 TGAATTCTTACGAATTACAGGACCTG 59.183 38.462 20.45 20.45 46.87 4.00
5774 9187 4.730949 TCTTACGAATTACAGGACCTGG 57.269 45.455 25.34 8.90 35.51 4.45
5775 9188 4.346730 TCTTACGAATTACAGGACCTGGA 58.653 43.478 25.34 15.28 35.51 3.86
5776 9189 4.159135 TCTTACGAATTACAGGACCTGGAC 59.841 45.833 25.34 4.58 35.51 4.02
5777 9190 2.537143 ACGAATTACAGGACCTGGACT 58.463 47.619 25.34 8.76 35.51 3.85
5778 9191 2.233922 ACGAATTACAGGACCTGGACTG 59.766 50.000 25.34 17.30 40.48 3.51
5779 9192 2.633488 GAATTACAGGACCTGGACTGC 58.367 52.381 25.34 6.35 38.25 4.40
5780 9193 1.656587 ATTACAGGACCTGGACTGCA 58.343 50.000 25.34 1.98 38.25 4.41
5781 9194 1.429930 TTACAGGACCTGGACTGCAA 58.570 50.000 25.34 11.87 38.25 4.08
5782 9195 0.976641 TACAGGACCTGGACTGCAAG 59.023 55.000 25.34 0.00 38.25 4.01
5783 9196 1.002868 CAGGACCTGGACTGCAAGG 60.003 63.158 14.26 0.37 39.30 3.61
5785 9198 0.178903 AGGACCTGGACTGCAAGGTA 60.179 55.000 7.80 0.00 46.97 3.08
5786 9199 0.690762 GGACCTGGACTGCAAGGTAA 59.309 55.000 7.80 0.00 46.97 2.85
5787 9200 1.282157 GGACCTGGACTGCAAGGTAAT 59.718 52.381 7.80 0.00 46.97 1.89
5788 9201 2.633488 GACCTGGACTGCAAGGTAATC 58.367 52.381 7.80 0.00 46.97 1.75
5789 9202 2.237392 GACCTGGACTGCAAGGTAATCT 59.763 50.000 7.80 0.00 46.97 2.40
5790 9203 2.237392 ACCTGGACTGCAAGGTAATCTC 59.763 50.000 6.00 0.00 45.15 2.75
5791 9204 2.544685 CTGGACTGCAAGGTAATCTCG 58.455 52.381 0.00 0.00 39.30 4.04
5792 9205 2.166459 CTGGACTGCAAGGTAATCTCGA 59.834 50.000 0.00 0.00 39.30 4.04
5793 9206 2.565391 TGGACTGCAAGGTAATCTCGAA 59.435 45.455 0.00 0.00 39.30 3.71
5794 9207 3.197766 TGGACTGCAAGGTAATCTCGAAT 59.802 43.478 0.00 0.00 39.30 3.34
5795 9208 4.192317 GGACTGCAAGGTAATCTCGAATT 58.808 43.478 0.00 0.00 39.30 2.17
5796 9209 5.105106 TGGACTGCAAGGTAATCTCGAATTA 60.105 40.000 0.00 0.00 39.30 1.40
5797 9210 5.234543 GGACTGCAAGGTAATCTCGAATTAC 59.765 44.000 15.97 15.97 39.30 1.89
5806 9219 6.830114 GTAATCTCGAATTACCAAGACCTG 57.170 41.667 14.45 0.00 0.00 4.00
5807 9220 5.677319 AATCTCGAATTACCAAGACCTGA 57.323 39.130 0.00 0.00 0.00 3.86
5808 9221 4.451629 TCTCGAATTACCAAGACCTGAC 57.548 45.455 0.00 0.00 0.00 3.51
5809 9222 3.119602 TCTCGAATTACCAAGACCTGACG 60.120 47.826 0.00 0.00 0.00 4.35
5810 9223 2.821378 TCGAATTACCAAGACCTGACGA 59.179 45.455 0.00 0.00 0.00 4.20
5811 9224 3.256383 TCGAATTACCAAGACCTGACGAA 59.744 43.478 0.00 0.00 0.00 3.85
5812 9225 4.081862 TCGAATTACCAAGACCTGACGAAT 60.082 41.667 0.00 0.00 0.00 3.34
5813 9226 4.032900 CGAATTACCAAGACCTGACGAATG 59.967 45.833 0.00 0.00 0.00 2.67
5814 9227 2.380084 TACCAAGACCTGACGAATGC 57.620 50.000 0.00 0.00 0.00 3.56
5815 9228 0.670546 ACCAAGACCTGACGAATGCG 60.671 55.000 0.00 0.00 44.79 4.73
5816 9229 1.421485 CAAGACCTGACGAATGCGC 59.579 57.895 0.00 0.00 42.48 6.09
5817 9230 1.016130 CAAGACCTGACGAATGCGCT 61.016 55.000 9.73 0.00 42.48 5.92
5818 9231 0.320771 AAGACCTGACGAATGCGCTT 60.321 50.000 9.73 0.00 42.48 4.68
5819 9232 0.320771 AGACCTGACGAATGCGCTTT 60.321 50.000 9.73 9.03 42.48 3.51
5820 9233 0.095417 GACCTGACGAATGCGCTTTC 59.905 55.000 22.38 22.38 42.48 2.62
5821 9234 0.320771 ACCTGACGAATGCGCTTTCT 60.321 50.000 27.18 17.21 42.48 2.52
5822 9235 1.067142 ACCTGACGAATGCGCTTTCTA 60.067 47.619 27.18 15.64 42.48 2.10
5823 9236 2.205074 CCTGACGAATGCGCTTTCTAT 58.795 47.619 27.18 18.12 42.48 1.98
5824 9237 2.609459 CCTGACGAATGCGCTTTCTATT 59.391 45.455 27.18 15.11 42.48 1.73
5825 9238 3.802139 CCTGACGAATGCGCTTTCTATTA 59.198 43.478 27.18 14.66 42.48 0.98
5826 9239 4.318121 CCTGACGAATGCGCTTTCTATTAC 60.318 45.833 27.18 16.19 42.48 1.89
5827 9240 4.430007 TGACGAATGCGCTTTCTATTACT 58.570 39.130 27.18 8.14 42.48 2.24
5828 9241 4.267690 TGACGAATGCGCTTTCTATTACTG 59.732 41.667 27.18 15.59 42.48 2.74
5829 9242 3.555956 ACGAATGCGCTTTCTATTACTGG 59.444 43.478 27.18 15.01 42.48 4.00
5830 9243 3.604772 CGAATGCGCTTTCTATTACTGGC 60.605 47.826 27.18 4.65 0.00 4.85
5831 9244 2.691409 TGCGCTTTCTATTACTGGCT 57.309 45.000 9.73 0.00 0.00 4.75
5832 9245 3.812156 TGCGCTTTCTATTACTGGCTA 57.188 42.857 9.73 0.00 0.00 3.93
5833 9246 4.131649 TGCGCTTTCTATTACTGGCTAA 57.868 40.909 9.73 0.00 0.00 3.09
5834 9247 4.703897 TGCGCTTTCTATTACTGGCTAAT 58.296 39.130 9.73 0.00 0.00 1.73
5835 9248 5.849510 TGCGCTTTCTATTACTGGCTAATA 58.150 37.500 9.73 0.00 0.00 0.98
5836 9249 6.464222 TGCGCTTTCTATTACTGGCTAATAT 58.536 36.000 9.73 0.00 28.67 1.28
5837 9250 6.368791 TGCGCTTTCTATTACTGGCTAATATG 59.631 38.462 9.73 0.00 28.67 1.78
5838 9251 6.369065 GCGCTTTCTATTACTGGCTAATATGT 59.631 38.462 0.00 0.00 28.67 2.29
5839 9252 7.544566 GCGCTTTCTATTACTGGCTAATATGTA 59.455 37.037 0.00 0.00 28.67 2.29
5840 9253 8.861101 CGCTTTCTATTACTGGCTAATATGTAC 58.139 37.037 0.00 0.00 28.67 2.90
5841 9254 9.706691 GCTTTCTATTACTGGCTAATATGTACA 57.293 33.333 0.00 0.00 28.67 2.90
5848 9261 9.681062 ATTACTGGCTAATATGTACAAGTTGTT 57.319 29.630 14.90 0.00 0.00 2.83
5849 9262 7.996098 ACTGGCTAATATGTACAAGTTGTTT 57.004 32.000 14.90 4.47 0.00 2.83
5850 9263 8.404107 ACTGGCTAATATGTACAAGTTGTTTT 57.596 30.769 14.90 2.23 0.00 2.43
5851 9264 8.296713 ACTGGCTAATATGTACAAGTTGTTTTG 58.703 33.333 14.90 4.32 0.00 2.44
5852 9265 7.087639 TGGCTAATATGTACAAGTTGTTTTGC 58.912 34.615 14.90 13.36 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 6.916360 TTTTCCATCTTCCTTAACAGCAAT 57.084 33.333 0.00 0.00 0.00 3.56
71 73 6.049955 ACGACTGATTTTCCATCTTCCTTA 57.950 37.500 0.00 0.00 0.00 2.69
131 133 1.847968 CCTCCCCTTGACTGGTGGT 60.848 63.158 0.00 0.00 31.93 4.16
177 224 1.041447 TGCCTACGTAGCCTTCTCCC 61.041 60.000 17.41 0.00 0.00 4.30
438 492 2.074547 TTAGTGGTGAGCTTACACGC 57.925 50.000 11.15 6.75 41.12 5.34
467 521 9.569167 GTAAAAAGCCAGATTTGTATAGGAAAC 57.431 33.333 0.00 0.00 0.00 2.78
582 823 4.717778 TGGATCGGAGGTAGAAATAACCAA 59.282 41.667 0.00 0.00 39.64 3.67
588 829 4.200092 GCTTTTGGATCGGAGGTAGAAAT 58.800 43.478 0.00 0.00 0.00 2.17
697 939 1.743252 GAGAAACCCGCTGGCAGAG 60.743 63.158 20.86 16.03 33.59 3.35
915 1303 5.585047 GTGGATTAACAGATCTTGGGTGTAC 59.415 44.000 0.00 0.00 0.00 2.90
933 1321 5.395214 GGGAGTTTTGTTTGTTCTGTGGATT 60.395 40.000 0.00 0.00 0.00 3.01
1033 1434 5.284079 CGATGCAGCCAATTTTAAGCTTAT 58.716 37.500 7.08 0.00 33.70 1.73
1105 1506 0.541392 TGGAGCTCACGTGCCATATT 59.459 50.000 17.19 0.00 0.00 1.28
1290 4195 1.697297 GGAATCCTTCCCCTTGGCA 59.303 57.895 0.00 0.00 44.30 4.92
1310 4215 1.153168 ATGGAGGAATTGGCCGACG 60.153 57.895 0.00 0.00 0.00 5.12
1491 4417 2.032681 GGTATGATGGGGCGCTCC 59.967 66.667 22.87 22.87 0.00 4.70
1495 4421 0.957395 GCTGATGGTATGATGGGGCG 60.957 60.000 0.00 0.00 0.00 6.13
1723 4661 4.885413 ACCCACATTGTCACATCAAAATG 58.115 39.130 0.00 0.00 38.93 2.32
1855 4794 4.696877 TGACTCTTGCAATATGTTGGACAG 59.303 41.667 0.00 2.83 35.26 3.51
1860 4799 4.264253 TCCCTGACTCTTGCAATATGTTG 58.736 43.478 0.00 0.00 38.39 3.33
1867 4806 3.157087 GGAATTTCCCTGACTCTTGCAA 58.843 45.455 3.89 0.00 0.00 4.08
1929 4868 2.867109 ACAGTTGGTCCCATTCTCTG 57.133 50.000 0.00 0.00 0.00 3.35
2004 4944 7.206981 GCAAAGAGCAGCTGGAAATATATTA 57.793 36.000 17.12 0.00 44.79 0.98
2061 5010 3.118261 TGAAGAGTGCCAAGAACTGAGTT 60.118 43.478 0.00 0.00 0.00 3.01
2086 5035 2.171237 CTGGTCCAGAGAATGCATGGTA 59.829 50.000 14.26 0.00 35.51 3.25
2114 5063 2.350899 TTCATGCAACTGCGGATTTG 57.649 45.000 0.00 2.53 45.83 2.32
2146 5107 4.381292 CCTTTTAGCAATCTTCCCTGCAAG 60.381 45.833 0.00 0.00 41.17 4.01
2153 5114 3.763897 TCCAAGCCTTTTAGCAATCTTCC 59.236 43.478 0.00 0.00 34.23 3.46
2298 5259 5.422331 TGGACCTAACTTCTCATAACTCCAG 59.578 44.000 0.00 0.00 0.00 3.86
2318 5279 1.023513 GCACCTCTGCAGACATGGAC 61.024 60.000 23.41 12.92 43.62 4.02
2463 5424 1.479323 CATTGAAGCAATCCCACCCTG 59.521 52.381 0.00 0.00 31.05 4.45
2464 5425 1.358787 TCATTGAAGCAATCCCACCCT 59.641 47.619 0.00 0.00 31.05 4.34
2465 5426 1.851304 TCATTGAAGCAATCCCACCC 58.149 50.000 0.00 0.00 31.05 4.61
2466 5427 3.959535 TTTCATTGAAGCAATCCCACC 57.040 42.857 0.00 0.00 31.05 4.61
2467 5428 5.075858 TCATTTCATTGAAGCAATCCCAC 57.924 39.130 0.00 0.00 31.05 4.61
2468 5429 5.659525 AGATCATTTCATTGAAGCAATCCCA 59.340 36.000 0.00 0.00 31.05 4.37
2469 5430 6.040616 AGAGATCATTTCATTGAAGCAATCCC 59.959 38.462 0.00 0.00 31.05 3.85
2926 5951 5.998454 AACTCTCAACTGTGTGATTGAAG 57.002 39.130 0.00 0.00 34.52 3.02
2973 5998 4.610680 GCCTTTTAATATGCCGTAGCTTCG 60.611 45.833 5.67 5.67 40.80 3.79
3320 6367 4.704540 ACCATCAATTTGAATACGCCTCAA 59.295 37.500 2.68 0.00 0.00 3.02
3322 6369 4.900635 ACCATCAATTTGAATACGCCTC 57.099 40.909 2.68 0.00 0.00 4.70
3780 6828 7.495279 CCAATACTTCATCTTCCTCTCTTTCTG 59.505 40.741 0.00 0.00 0.00 3.02
4044 7100 3.938334 GCCAAGTTTTGTCAAATGTTGGT 59.062 39.130 25.65 1.85 39.21 3.67
4083 7139 1.739562 GACCTGAGACGCCAGCAAG 60.740 63.158 0.00 0.00 32.97 4.01
4454 7510 4.561105 AGTGAATTCTGGACTCGAAACTC 58.439 43.478 7.05 0.00 0.00 3.01
4516 7572 2.297701 GGAACTGTGAAACCTTCAGCA 58.702 47.619 0.00 0.00 41.01 4.41
4930 7989 3.187700 CGGCCAATGAAGTAGTAGACAC 58.812 50.000 2.24 0.00 0.00 3.67
4936 8205 0.676782 GCACCGGCCAATGAAGTAGT 60.677 55.000 0.00 0.00 0.00 2.73
4945 8214 2.361104 GGAATCAGCACCGGCCAA 60.361 61.111 0.00 0.00 42.56 4.52
5039 8313 2.281692 ACAGCTGGCAACGCATGA 60.282 55.556 19.93 0.00 38.34 3.07
5040 8314 1.929806 ATGACAGCTGGCAACGCATG 61.930 55.000 29.42 0.00 36.16 4.06
5041 8315 1.246056 AATGACAGCTGGCAACGCAT 61.246 50.000 29.42 6.56 36.16 4.73
5053 8348 9.791820 TGAATAATAGCATGAACAAAATGACAG 57.208 29.630 0.00 0.00 0.00 3.51
5144 8451 7.065683 CCATGCACACAAAGTACTATGAATACA 59.934 37.037 0.00 0.00 0.00 2.29
5149 8456 5.159273 TCCATGCACACAAAGTACTATGA 57.841 39.130 0.00 0.00 0.00 2.15
5150 8457 6.127925 ACAATCCATGCACACAAAGTACTATG 60.128 38.462 0.00 0.00 0.00 2.23
5151 8458 5.945784 ACAATCCATGCACACAAAGTACTAT 59.054 36.000 0.00 0.00 0.00 2.12
5179 8486 7.990917 TGTAAGAGCACACAAGACATTAAAAA 58.009 30.769 0.00 0.00 0.00 1.94
5180 8487 7.561021 TGTAAGAGCACACAAGACATTAAAA 57.439 32.000 0.00 0.00 0.00 1.52
5184 8492 5.643777 GGTATGTAAGAGCACACAAGACATT 59.356 40.000 0.00 0.00 0.00 2.71
5187 8495 4.822026 AGGTATGTAAGAGCACACAAGAC 58.178 43.478 0.00 0.00 0.00 3.01
5189 8497 5.078411 AGAGGTATGTAAGAGCACACAAG 57.922 43.478 0.00 0.00 0.00 3.16
5199 8507 9.613957 CGTCACATTTATCTAGAGGTATGTAAG 57.386 37.037 13.08 5.87 0.00 2.34
5202 8510 6.776116 TCCGTCACATTTATCTAGAGGTATGT 59.224 38.462 0.00 4.74 0.00 2.29
5205 8513 6.264744 CCTTCCGTCACATTTATCTAGAGGTA 59.735 42.308 0.00 0.00 0.00 3.08
5206 8514 5.069251 CCTTCCGTCACATTTATCTAGAGGT 59.931 44.000 0.00 0.00 0.00 3.85
5209 8517 5.892119 AGACCTTCCGTCACATTTATCTAGA 59.108 40.000 0.00 0.00 44.66 2.43
5210 8518 6.039941 AGAGACCTTCCGTCACATTTATCTAG 59.960 42.308 0.00 0.00 44.66 2.43
5211 8519 5.892119 AGAGACCTTCCGTCACATTTATCTA 59.108 40.000 0.00 0.00 44.66 1.98
5212 8520 4.712337 AGAGACCTTCCGTCACATTTATCT 59.288 41.667 0.00 0.00 44.66 1.98
5213 8521 5.012328 AGAGACCTTCCGTCACATTTATC 57.988 43.478 0.00 0.00 44.66 1.75
5215 8523 4.884668 AAGAGACCTTCCGTCACATTTA 57.115 40.909 0.00 0.00 44.66 1.40
5216 8524 3.771577 AAGAGACCTTCCGTCACATTT 57.228 42.857 0.00 0.00 44.66 2.32
5217 8525 3.771577 AAAGAGACCTTCCGTCACATT 57.228 42.857 0.00 0.00 44.66 2.71
5222 8560 5.074584 AGTGATAAAAGAGACCTTCCGTC 57.925 43.478 0.00 0.00 42.32 4.79
5225 8563 6.043854 AGTGAGTGATAAAAGAGACCTTCC 57.956 41.667 0.00 0.00 0.00 3.46
5230 8568 9.081997 CATTACAGAGTGAGTGATAAAAGAGAC 57.918 37.037 0.00 0.00 0.00 3.36
5249 8587 8.385858 CAATACATCACACAACTCTCATTACAG 58.614 37.037 0.00 0.00 0.00 2.74
5250 8588 7.148423 GCAATACATCACACAACTCTCATTACA 60.148 37.037 0.00 0.00 0.00 2.41
5251 8589 7.148423 TGCAATACATCACACAACTCTCATTAC 60.148 37.037 0.00 0.00 0.00 1.89
5252 8590 6.878389 TGCAATACATCACACAACTCTCATTA 59.122 34.615 0.00 0.00 0.00 1.90
5253 8591 5.706833 TGCAATACATCACACAACTCTCATT 59.293 36.000 0.00 0.00 0.00 2.57
5255 8593 4.640364 TGCAATACATCACACAACTCTCA 58.360 39.130 0.00 0.00 0.00 3.27
5256 8594 4.692625 ACTGCAATACATCACACAACTCTC 59.307 41.667 0.00 0.00 0.00 3.20
5257 8595 4.645535 ACTGCAATACATCACACAACTCT 58.354 39.130 0.00 0.00 0.00 3.24
5258 8596 5.639506 AGTACTGCAATACATCACACAACTC 59.360 40.000 8.20 0.00 0.00 3.01
5259 8597 5.551233 AGTACTGCAATACATCACACAACT 58.449 37.500 8.20 0.00 0.00 3.16
5260 8598 5.862924 AGTACTGCAATACATCACACAAC 57.137 39.130 8.20 0.00 0.00 3.32
5262 8600 4.694982 CCAAGTACTGCAATACATCACACA 59.305 41.667 8.20 0.00 0.00 3.72
5263 8601 4.094887 CCCAAGTACTGCAATACATCACAC 59.905 45.833 8.20 0.00 0.00 3.82
5264 8602 4.260985 CCCAAGTACTGCAATACATCACA 58.739 43.478 8.20 0.00 0.00 3.58
5292 8631 4.453136 GCACATGGCAAATGATTTCAAGTT 59.547 37.500 5.60 0.00 43.97 2.66
5337 8677 9.667107 TTCTATCTATACCAACAAAAGTTCCAG 57.333 33.333 0.00 0.00 0.00 3.86
5369 8712 1.666054 CCCTGAAGATCTGAAGCAGC 58.334 55.000 0.00 0.00 0.00 5.25
5413 8757 0.252479 ACAGAGCAGGGAATGAGCAG 59.748 55.000 0.00 0.00 0.00 4.24
5437 8781 8.855110 AGTCCTCATTTGTAGTACATGAGATAG 58.145 37.037 25.56 14.56 37.39 2.08
5453 8797 9.607333 TCTCACTATATATGGAAGTCCTCATTT 57.393 33.333 2.68 0.00 36.82 2.32
5465 8809 6.025749 TCACGCCTTTCTCACTATATATGG 57.974 41.667 0.00 0.00 0.00 2.74
5475 8819 0.320771 GCCTCTTCACGCCTTTCTCA 60.321 55.000 0.00 0.00 0.00 3.27
5476 8820 0.036858 AGCCTCTTCACGCCTTTCTC 60.037 55.000 0.00 0.00 0.00 2.87
5483 8827 3.166489 ACAGTATAAGCCTCTTCACGC 57.834 47.619 0.00 0.00 0.00 5.34
5485 8829 5.122396 CACCAAACAGTATAAGCCTCTTCAC 59.878 44.000 0.00 0.00 0.00 3.18
5486 8830 5.245531 CACCAAACAGTATAAGCCTCTTCA 58.754 41.667 0.00 0.00 0.00 3.02
5487 8831 4.095036 GCACCAAACAGTATAAGCCTCTTC 59.905 45.833 0.00 0.00 0.00 2.87
5488 8832 4.010349 GCACCAAACAGTATAAGCCTCTT 58.990 43.478 0.00 0.00 0.00 2.85
5489 8833 3.009033 TGCACCAAACAGTATAAGCCTCT 59.991 43.478 0.00 0.00 0.00 3.69
5490 8834 3.127030 GTGCACCAAACAGTATAAGCCTC 59.873 47.826 5.22 0.00 0.00 4.70
5519 8919 0.875059 CGGAAAACTGAGCAGGGAAC 59.125 55.000 2.20 0.00 0.00 3.62
5520 8920 0.250727 CCGGAAAACTGAGCAGGGAA 60.251 55.000 0.00 0.00 0.00 3.97
5521 8921 1.374947 CCGGAAAACTGAGCAGGGA 59.625 57.895 0.00 0.00 0.00 4.20
5522 8922 2.335712 GCCGGAAAACTGAGCAGGG 61.336 63.158 5.05 0.00 0.00 4.45
5523 8923 0.890996 AAGCCGGAAAACTGAGCAGG 60.891 55.000 5.05 0.00 0.00 4.85
5524 8924 1.464997 GTAAGCCGGAAAACTGAGCAG 59.535 52.381 5.05 0.00 0.00 4.24
5525 8925 1.519408 GTAAGCCGGAAAACTGAGCA 58.481 50.000 5.05 0.00 0.00 4.26
5526 8926 0.442699 CGTAAGCCGGAAAACTGAGC 59.557 55.000 5.05 0.00 0.00 4.26
5527 8927 1.792006 ACGTAAGCCGGAAAACTGAG 58.208 50.000 5.05 0.00 42.24 3.35
5528 8928 3.319755 CTTACGTAAGCCGGAAAACTGA 58.680 45.455 21.57 0.00 39.37 3.41
5529 8929 2.414138 CCTTACGTAAGCCGGAAAACTG 59.586 50.000 26.57 7.93 39.37 3.16
5530 8930 2.613725 CCCTTACGTAAGCCGGAAAACT 60.614 50.000 26.57 0.00 39.37 2.66
5531 8931 1.733912 CCCTTACGTAAGCCGGAAAAC 59.266 52.381 26.57 0.00 39.37 2.43
5532 8932 1.622811 TCCCTTACGTAAGCCGGAAAA 59.377 47.619 26.57 7.83 39.37 2.29
5533 8933 1.265236 TCCCTTACGTAAGCCGGAAA 58.735 50.000 26.57 8.45 39.37 3.13
5534 8934 1.205417 CTTCCCTTACGTAAGCCGGAA 59.795 52.381 29.02 29.02 42.24 4.30
5535 8935 0.819582 CTTCCCTTACGTAAGCCGGA 59.180 55.000 26.57 24.16 42.24 5.14
5536 8936 0.533951 ACTTCCCTTACGTAAGCCGG 59.466 55.000 26.57 22.53 42.24 6.13
5537 8937 2.797439 GCTACTTCCCTTACGTAAGCCG 60.797 54.545 26.57 18.76 45.62 5.52
5538 8938 2.482664 GGCTACTTCCCTTACGTAAGCC 60.483 54.545 26.57 19.71 45.62 4.35
5539 8939 2.797439 CGGCTACTTCCCTTACGTAAGC 60.797 54.545 26.57 15.08 45.62 3.09
5541 8941 2.164219 CACGGCTACTTCCCTTACGTAA 59.836 50.000 7.94 7.94 0.00 3.18
5542 8942 1.745087 CACGGCTACTTCCCTTACGTA 59.255 52.381 0.00 0.00 0.00 3.57
5543 8943 0.529378 CACGGCTACTTCCCTTACGT 59.471 55.000 0.00 0.00 0.00 3.57
5544 8944 0.804933 GCACGGCTACTTCCCTTACG 60.805 60.000 0.00 0.00 0.00 3.18
5545 8945 0.535797 AGCACGGCTACTTCCCTTAC 59.464 55.000 0.00 0.00 36.99 2.34
5546 8946 0.822164 GAGCACGGCTACTTCCCTTA 59.178 55.000 0.00 0.00 39.88 2.69
5547 8947 0.905337 AGAGCACGGCTACTTCCCTT 60.905 55.000 0.00 0.00 39.88 3.95
5548 8948 1.305381 AGAGCACGGCTACTTCCCT 60.305 57.895 0.00 0.00 39.88 4.20
5549 8949 1.153549 CAGAGCACGGCTACTTCCC 60.154 63.158 0.00 0.00 39.88 3.97
5550 8950 0.037232 AACAGAGCACGGCTACTTCC 60.037 55.000 0.00 0.00 39.88 3.46
5551 8951 1.797025 AAACAGAGCACGGCTACTTC 58.203 50.000 0.00 0.00 39.88 3.01
5552 8952 1.873591 CAAAACAGAGCACGGCTACTT 59.126 47.619 0.00 0.00 39.88 2.24
5553 8953 1.512926 CAAAACAGAGCACGGCTACT 58.487 50.000 0.00 0.00 39.88 2.57
5554 8954 0.110192 GCAAAACAGAGCACGGCTAC 60.110 55.000 0.00 0.00 39.88 3.58
5555 8955 0.250295 AGCAAAACAGAGCACGGCTA 60.250 50.000 0.00 0.00 39.88 3.93
5556 8956 1.526917 AGCAAAACAGAGCACGGCT 60.527 52.632 0.00 0.00 43.88 5.52
5557 8957 1.370900 CAGCAAAACAGAGCACGGC 60.371 57.895 0.00 0.00 0.00 5.68
5607 9007 4.175337 GCCGAGCCAGCATACCCA 62.175 66.667 0.00 0.00 0.00 4.51
5608 9008 3.406595 AAGCCGAGCCAGCATACCC 62.407 63.158 0.00 0.00 0.00 3.69
5609 9009 2.182842 CAAGCCGAGCCAGCATACC 61.183 63.158 0.00 0.00 0.00 2.73
5610 9010 2.182842 CCAAGCCGAGCCAGCATAC 61.183 63.158 0.00 0.00 0.00 2.39
5611 9011 2.190313 CCAAGCCGAGCCAGCATA 59.810 61.111 0.00 0.00 0.00 3.14
5612 9012 4.809496 CCCAAGCCGAGCCAGCAT 62.809 66.667 0.00 0.00 0.00 3.79
5626 9026 3.047857 TCATCCATCACAATAGCTCCCA 58.952 45.455 0.00 0.00 0.00 4.37
5633 9033 4.710313 TCTGCCATCATCCATCACAATA 57.290 40.909 0.00 0.00 0.00 1.90
5663 9071 2.025037 AGCCATCCAGGTTCTGCAATTA 60.025 45.455 0.00 0.00 40.61 1.40
5666 9074 0.322816 GAGCCATCCAGGTTCTGCAA 60.323 55.000 0.00 0.00 43.72 4.08
5689 9101 2.508716 ACATGCCTGGAATGAGTGAGAT 59.491 45.455 21.75 0.00 0.00 2.75
5733 9146 8.883731 CGTAAGAATTCAGTGACAGGATAAATT 58.116 33.333 8.44 0.00 43.02 1.82
5734 9147 8.425577 CGTAAGAATTCAGTGACAGGATAAAT 57.574 34.615 8.44 0.00 43.02 1.40
5735 9148 7.827819 CGTAAGAATTCAGTGACAGGATAAA 57.172 36.000 8.44 0.00 43.02 1.40
5754 9167 4.159879 AGTCCAGGTCCTGTAATTCGTAAG 59.840 45.833 17.85 0.00 0.00 2.34
5755 9168 4.081862 CAGTCCAGGTCCTGTAATTCGTAA 60.082 45.833 17.85 0.00 0.00 3.18
5756 9169 3.446161 CAGTCCAGGTCCTGTAATTCGTA 59.554 47.826 17.85 0.00 0.00 3.43
5757 9170 2.233922 CAGTCCAGGTCCTGTAATTCGT 59.766 50.000 17.85 0.00 0.00 3.85
5758 9171 2.893637 CAGTCCAGGTCCTGTAATTCG 58.106 52.381 17.85 1.25 0.00 3.34
5759 9172 2.027192 TGCAGTCCAGGTCCTGTAATTC 60.027 50.000 17.85 0.00 0.00 2.17
5760 9173 1.985159 TGCAGTCCAGGTCCTGTAATT 59.015 47.619 17.85 0.00 0.00 1.40
5761 9174 1.656587 TGCAGTCCAGGTCCTGTAAT 58.343 50.000 17.85 0.00 0.00 1.89
5762 9175 1.347707 CTTGCAGTCCAGGTCCTGTAA 59.652 52.381 17.85 2.62 33.26 2.41
5763 9176 0.976641 CTTGCAGTCCAGGTCCTGTA 59.023 55.000 17.85 0.00 0.00 2.74
5764 9177 1.757306 CTTGCAGTCCAGGTCCTGT 59.243 57.895 17.85 0.00 0.00 4.00
5765 9178 1.002868 CCTTGCAGTCCAGGTCCTG 60.003 63.158 12.40 12.40 0.00 3.86
5766 9179 0.178903 TACCTTGCAGTCCAGGTCCT 60.179 55.000 11.10 0.00 35.99 3.85
5767 9180 0.690762 TTACCTTGCAGTCCAGGTCC 59.309 55.000 11.10 0.00 35.99 4.46
5768 9181 2.237392 AGATTACCTTGCAGTCCAGGTC 59.763 50.000 11.10 0.00 35.99 3.85
5769 9182 2.237392 GAGATTACCTTGCAGTCCAGGT 59.763 50.000 12.34 12.34 38.36 4.00
5770 9183 2.739932 CGAGATTACCTTGCAGTCCAGG 60.740 54.545 0.37 0.37 0.00 4.45
5771 9184 2.166459 TCGAGATTACCTTGCAGTCCAG 59.834 50.000 0.00 0.00 0.00 3.86
5772 9185 2.176045 TCGAGATTACCTTGCAGTCCA 58.824 47.619 0.00 0.00 0.00 4.02
5773 9186 2.961526 TCGAGATTACCTTGCAGTCC 57.038 50.000 0.00 0.00 0.00 3.85
5774 9187 5.234543 GGTAATTCGAGATTACCTTGCAGTC 59.765 44.000 25.91 10.15 46.14 3.51
5775 9188 5.116882 GGTAATTCGAGATTACCTTGCAGT 58.883 41.667 25.91 0.00 46.14 4.40
5776 9189 5.659048 GGTAATTCGAGATTACCTTGCAG 57.341 43.478 25.91 0.00 46.14 4.41
5783 9196 6.476053 GTCAGGTCTTGGTAATTCGAGATTAC 59.524 42.308 15.97 15.97 34.63 1.89
5784 9197 6.570692 GTCAGGTCTTGGTAATTCGAGATTA 58.429 40.000 0.00 0.00 30.64 1.75
5785 9198 5.420409 GTCAGGTCTTGGTAATTCGAGATT 58.580 41.667 0.00 0.00 30.64 2.40
5786 9199 4.440250 CGTCAGGTCTTGGTAATTCGAGAT 60.440 45.833 0.00 0.00 30.64 2.75
5787 9200 3.119602 CGTCAGGTCTTGGTAATTCGAGA 60.120 47.826 0.00 0.00 0.00 4.04
5788 9201 3.119602 TCGTCAGGTCTTGGTAATTCGAG 60.120 47.826 0.00 0.00 0.00 4.04
5789 9202 2.821378 TCGTCAGGTCTTGGTAATTCGA 59.179 45.455 0.00 0.00 0.00 3.71
5790 9203 3.226346 TCGTCAGGTCTTGGTAATTCG 57.774 47.619 0.00 0.00 0.00 3.34
5791 9204 4.201822 GCATTCGTCAGGTCTTGGTAATTC 60.202 45.833 0.00 0.00 0.00 2.17
5792 9205 3.689649 GCATTCGTCAGGTCTTGGTAATT 59.310 43.478 0.00 0.00 0.00 1.40
5793 9206 3.270877 GCATTCGTCAGGTCTTGGTAAT 58.729 45.455 0.00 0.00 0.00 1.89
5794 9207 2.695359 GCATTCGTCAGGTCTTGGTAA 58.305 47.619 0.00 0.00 0.00 2.85
5795 9208 1.403647 CGCATTCGTCAGGTCTTGGTA 60.404 52.381 0.00 0.00 0.00 3.25
5796 9209 0.670546 CGCATTCGTCAGGTCTTGGT 60.671 55.000 0.00 0.00 0.00 3.67
5797 9210 1.970917 GCGCATTCGTCAGGTCTTGG 61.971 60.000 0.30 0.00 38.14 3.61
5798 9211 1.016130 AGCGCATTCGTCAGGTCTTG 61.016 55.000 11.47 0.00 38.14 3.02
5799 9212 0.320771 AAGCGCATTCGTCAGGTCTT 60.321 50.000 11.47 0.00 38.14 3.01
5800 9213 0.320771 AAAGCGCATTCGTCAGGTCT 60.321 50.000 11.47 0.00 38.14 3.85
5801 9214 0.095417 GAAAGCGCATTCGTCAGGTC 59.905 55.000 11.47 0.00 38.14 3.85
5802 9215 0.320771 AGAAAGCGCATTCGTCAGGT 60.321 50.000 18.59 0.00 38.14 4.00
5803 9216 1.640428 TAGAAAGCGCATTCGTCAGG 58.360 50.000 18.59 0.00 38.14 3.86
5804 9217 3.933155 AATAGAAAGCGCATTCGTCAG 57.067 42.857 18.59 0.00 38.14 3.51
5805 9218 4.267690 CAGTAATAGAAAGCGCATTCGTCA 59.732 41.667 18.59 9.33 38.14 4.35
5806 9219 4.318121 CCAGTAATAGAAAGCGCATTCGTC 60.318 45.833 18.59 9.22 38.14 4.20
5807 9220 3.555956 CCAGTAATAGAAAGCGCATTCGT 59.444 43.478 18.59 9.69 38.14 3.85
5808 9221 3.604772 GCCAGTAATAGAAAGCGCATTCG 60.605 47.826 18.59 4.28 34.46 3.34
5809 9222 3.561725 AGCCAGTAATAGAAAGCGCATTC 59.438 43.478 17.19 17.19 0.00 2.67
5810 9223 3.545703 AGCCAGTAATAGAAAGCGCATT 58.454 40.909 11.47 2.75 0.00 3.56
5811 9224 3.199880 AGCCAGTAATAGAAAGCGCAT 57.800 42.857 11.47 0.00 0.00 4.73
5812 9225 2.691409 AGCCAGTAATAGAAAGCGCA 57.309 45.000 11.47 0.00 0.00 6.09
5813 9226 6.369065 ACATATTAGCCAGTAATAGAAAGCGC 59.631 38.462 0.00 0.00 37.08 5.92
5814 9227 7.891183 ACATATTAGCCAGTAATAGAAAGCG 57.109 36.000 0.00 0.00 37.08 4.68
5815 9228 9.706691 TGTACATATTAGCCAGTAATAGAAAGC 57.293 33.333 0.00 0.00 37.08 3.51
5822 9235 9.681062 AACAACTTGTACATATTAGCCAGTAAT 57.319 29.630 0.00 0.00 35.40 1.89
5823 9236 9.509956 AAACAACTTGTACATATTAGCCAGTAA 57.490 29.630 0.00 0.00 0.00 2.24
5824 9237 9.509956 AAAACAACTTGTACATATTAGCCAGTA 57.490 29.630 0.00 0.00 0.00 2.74
5825 9238 7.996098 AAACAACTTGTACATATTAGCCAGT 57.004 32.000 0.00 0.00 0.00 4.00
5826 9239 7.273381 GCAAAACAACTTGTACATATTAGCCAG 59.727 37.037 0.00 0.00 0.00 4.85
5827 9240 7.087639 GCAAAACAACTTGTACATATTAGCCA 58.912 34.615 0.00 0.00 0.00 4.75
5828 9241 7.506296 GCAAAACAACTTGTACATATTAGCC 57.494 36.000 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.