Multiple sequence alignment - TraesCS4A01G477900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G477900 chr4A 100.000 2609 0 0 1 2609 735504625 735502017 0.000000e+00 4819.0
1 TraesCS4A01G477900 chr4A 93.387 499 12 5 130 607 602271393 602270895 0.000000e+00 719.0
2 TraesCS4A01G477900 chr4A 93.277 119 5 2 1 116 602271496 602271378 3.450000e-39 172.0
3 TraesCS4A01G477900 chr2B 98.555 1384 4 1 300 1667 146777767 146776384 0.000000e+00 2431.0
4 TraesCS4A01G477900 chr2B 100.000 57 0 0 841 897 146777834 146777778 3.550000e-19 106.0
5 TraesCS4A01G477900 chr2B 95.161 62 1 2 602 661 13909336 13909397 2.140000e-16 97.1
6 TraesCS4A01G477900 chr4B 93.087 839 45 3 841 1666 575908330 575909168 0.000000e+00 1216.0
7 TraesCS4A01G477900 chr4B 92.809 445 22 5 173 607 3832586 3833030 1.020000e-178 636.0
8 TraesCS4A01G477900 chr3D 83.471 847 110 19 841 1666 603958802 603959639 0.000000e+00 761.0
9 TraesCS4A01G477900 chr3D 84.279 229 36 0 262 490 307568697 307568469 9.400000e-55 224.0
10 TraesCS4A01G477900 chr3A 83.425 730 110 7 841 1565 733476672 733477395 0.000000e+00 667.0
11 TraesCS4A01G477900 chr3A 86.283 226 31 0 262 487 426652880 426653105 2.010000e-61 246.0
12 TraesCS4A01G477900 chr3A 93.617 47 3 0 1566 1612 733477413 733477459 1.300000e-08 71.3
13 TraesCS4A01G477900 chr4D 93.706 429 21 3 173 597 3252003 3252429 2.830000e-179 638.0
14 TraesCS4A01G477900 chr4D 88.793 116 9 4 1 116 3251886 3251997 3.500000e-29 139.0
15 TraesCS4A01G477900 chr4D 85.612 139 11 6 2478 2607 108839889 108840027 1.260000e-28 137.0
16 TraesCS4A01G477900 chrUn 97.143 280 7 1 2021 2300 8618722 8619000 3.040000e-129 472.0
17 TraesCS4A01G477900 chr6A 96.503 286 9 1 2012 2297 371732679 371732395 3.040000e-129 472.0
18 TraesCS4A01G477900 chr6A 94.983 299 13 2 2002 2299 199590320 199590023 3.930000e-128 468.0
19 TraesCS4A01G477900 chr3B 96.503 286 9 1 2023 2308 17241548 17241832 3.040000e-129 472.0
20 TraesCS4A01G477900 chr3B 84.956 226 34 0 262 487 413992271 413992496 2.020000e-56 230.0
21 TraesCS4A01G477900 chr1B 97.143 280 7 1 2021 2300 593922793 593922515 3.040000e-129 472.0
22 TraesCS4A01G477900 chr1B 98.039 51 1 0 793 843 427667662 427667712 3.580000e-14 89.8
23 TraesCS4A01G477900 chr6B 97.133 279 7 1 2021 2299 707744395 707744118 1.090000e-128 470.0
24 TraesCS4A01G477900 chr6B 96.466 283 10 0 2021 2303 541986125 541986407 3.930000e-128 468.0
25 TraesCS4A01G477900 chr5B 96.797 281 8 1 2023 2303 687998956 687998677 3.930000e-128 468.0
26 TraesCS4A01G477900 chr7A 96.466 283 9 1 2018 2300 696538564 696538845 1.410000e-127 466.0
27 TraesCS4A01G477900 chr7D 89.548 354 24 5 1672 2019 633243294 633242948 1.110000e-118 436.0
28 TraesCS4A01G477900 chr7D 92.364 275 15 4 2339 2609 633242867 633242595 1.130000e-103 387.0
29 TraesCS4A01G477900 chr7D 80.645 155 21 4 2461 2607 20544226 20544379 7.630000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G477900 chr4A 735502017 735504625 2608 True 4819.00 4819 100.0000 1 2609 1 chr4A.!!$R1 2608
1 TraesCS4A01G477900 chr4A 602270895 602271496 601 True 445.50 719 93.3320 1 607 2 chr4A.!!$R2 606
2 TraesCS4A01G477900 chr2B 146776384 146777834 1450 True 1268.50 2431 99.2775 300 1667 2 chr2B.!!$R1 1367
3 TraesCS4A01G477900 chr4B 575908330 575909168 838 False 1216.00 1216 93.0870 841 1666 1 chr4B.!!$F2 825
4 TraesCS4A01G477900 chr3D 603958802 603959639 837 False 761.00 761 83.4710 841 1666 1 chr3D.!!$F1 825
5 TraesCS4A01G477900 chr3A 733476672 733477459 787 False 369.15 667 88.5210 841 1612 2 chr3A.!!$F2 771
6 TraesCS4A01G477900 chr4D 3251886 3252429 543 False 388.50 638 91.2495 1 597 2 chr4D.!!$F2 596
7 TraesCS4A01G477900 chr7D 633242595 633243294 699 True 411.50 436 90.9560 1672 2609 2 chr7D.!!$R1 937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 90 2.034053 ACACGCAACAAACGGATTGATT 59.966 40.909 4.92 0.0 41.85 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 1740 0.179084 GGCAGCTAATGGCGTCAGTA 60.179 55.0 0.0 0.0 45.54 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 90 2.034053 ACACGCAACAAACGGATTGATT 59.966 40.909 4.92 0.00 41.85 2.57
171 175 6.618287 TGAACAGAAAATGTCTTACACCTG 57.382 37.500 0.00 0.00 43.00 4.00
176 180 6.772716 ACAGAAAATGTCTTACACCTGAACAT 59.227 34.615 0.00 0.00 37.75 2.71
246 254 7.333423 TGCTAGTAACAAGCTTCGATGTATTTT 59.667 33.333 0.00 0.00 40.73 1.82
1624 1670 5.679792 GTGTTGTAACCGCTGAAGTTTTAAG 59.320 40.000 0.00 0.00 0.00 1.85
1694 1740 3.584733 AACTGCCTTCCTCTTTCTTGT 57.415 42.857 0.00 0.00 0.00 3.16
1697 1743 3.648545 ACTGCCTTCCTCTTTCTTGTACT 59.351 43.478 0.00 0.00 0.00 2.73
1733 1779 1.448985 GGTGCGGTAGAGATGCAAAA 58.551 50.000 0.00 0.00 40.83 2.44
1761 1807 0.806492 GCTGCTAGCGTAGTGGGTTC 60.806 60.000 10.77 0.00 0.00 3.62
1764 1810 1.621814 TGCTAGCGTAGTGGGTTCTTT 59.378 47.619 10.77 0.00 0.00 2.52
1769 1815 1.608283 GCGTAGTGGGTTCTTTCAGCT 60.608 52.381 0.00 0.00 0.00 4.24
1770 1816 2.069273 CGTAGTGGGTTCTTTCAGCTG 58.931 52.381 7.63 7.63 0.00 4.24
1806 1852 4.760047 GAGCCGGCGTGGATGTGT 62.760 66.667 23.20 0.00 42.00 3.72
1851 1897 0.469144 AATGGGGAACGTGCAACCTT 60.469 50.000 7.88 0.00 0.00 3.50
1852 1898 0.469144 ATGGGGAACGTGCAACCTTT 60.469 50.000 7.88 0.00 0.00 3.11
1869 1915 6.357367 CAACCTTTTACTGCTATCCACCTAT 58.643 40.000 0.00 0.00 0.00 2.57
1880 1926 3.862877 ATCCACCTATAAGTGCATGCA 57.137 42.857 18.46 18.46 36.38 3.96
1881 1927 2.917933 TCCACCTATAAGTGCATGCAC 58.082 47.619 37.87 37.87 46.50 4.57
1901 1947 9.009327 CATGCACCGTATTATTTAACTTTCTTG 57.991 33.333 0.00 0.00 0.00 3.02
1912 1958 6.586868 TTTAACTTTCTTGAAGAACGCGTA 57.413 33.333 14.46 0.00 38.77 4.42
1916 1962 3.438475 TTTCTTGAAGAACGCGTAGCCC 61.438 50.000 14.46 3.17 40.40 5.19
1937 1983 2.819117 CTAGCACTGTTCTGCGCCGA 62.819 60.000 4.18 0.00 42.42 5.54
1940 1986 1.956170 CACTGTTCTGCGCCGAAGT 60.956 57.895 14.92 7.41 0.00 3.01
1941 1987 0.666274 CACTGTTCTGCGCCGAAGTA 60.666 55.000 14.92 6.41 0.00 2.24
1942 1988 0.666577 ACTGTTCTGCGCCGAAGTAC 60.667 55.000 14.92 4.87 0.00 2.73
1943 1989 0.388649 CTGTTCTGCGCCGAAGTACT 60.389 55.000 14.92 0.00 0.00 2.73
1944 1990 0.666274 TGTTCTGCGCCGAAGTACTG 60.666 55.000 14.92 0.00 0.00 2.74
1945 1991 0.666577 GTTCTGCGCCGAAGTACTGT 60.667 55.000 14.92 0.00 0.00 3.55
1946 1992 0.032952 TTCTGCGCCGAAGTACTGTT 59.967 50.000 10.42 0.00 0.00 3.16
1962 2008 1.286260 GTTCAGCGACTGGACGAGT 59.714 57.895 6.95 0.00 37.76 4.18
1973 2019 0.464036 TGGACGAGTCAAAGCAGTGT 59.536 50.000 5.55 0.00 0.00 3.55
2019 2071 3.244596 ACCCAACTAGCCAGAAGTTTCTC 60.245 47.826 0.00 0.00 34.99 2.87
2020 2072 3.008485 CCCAACTAGCCAGAAGTTTCTCT 59.992 47.826 0.00 0.00 34.99 3.10
2021 2073 4.223032 CCCAACTAGCCAGAAGTTTCTCTA 59.777 45.833 0.00 0.00 34.99 2.43
2022 2074 5.280011 CCCAACTAGCCAGAAGTTTCTCTAA 60.280 44.000 0.00 0.00 34.99 2.10
2023 2075 5.872070 CCAACTAGCCAGAAGTTTCTCTAAG 59.128 44.000 0.00 0.00 34.99 2.18
2024 2076 5.669164 ACTAGCCAGAAGTTTCTCTAAGG 57.331 43.478 0.00 0.00 34.74 2.69
2025 2077 3.342377 AGCCAGAAGTTTCTCTAAGGC 57.658 47.619 11.13 11.13 40.83 4.35
2026 2078 2.909662 AGCCAGAAGTTTCTCTAAGGCT 59.090 45.455 14.38 14.38 43.86 4.58
2027 2079 3.006247 GCCAGAAGTTTCTCTAAGGCTG 58.994 50.000 11.60 0.00 38.75 4.85
2028 2080 3.604582 CCAGAAGTTTCTCTAAGGCTGG 58.395 50.000 0.00 0.00 34.74 4.85
2029 2081 3.008485 CCAGAAGTTTCTCTAAGGCTGGT 59.992 47.826 0.00 0.00 37.48 4.00
2030 2082 4.249661 CAGAAGTTTCTCTAAGGCTGGTC 58.750 47.826 0.00 0.00 34.74 4.02
2031 2083 3.904339 AGAAGTTTCTCTAAGGCTGGTCA 59.096 43.478 0.00 0.00 29.94 4.02
2032 2084 3.686916 AGTTTCTCTAAGGCTGGTCAC 57.313 47.619 0.00 0.00 0.00 3.67
2033 2085 2.972713 AGTTTCTCTAAGGCTGGTCACA 59.027 45.455 0.00 0.00 0.00 3.58
2034 2086 3.391296 AGTTTCTCTAAGGCTGGTCACAA 59.609 43.478 0.00 0.00 0.00 3.33
2035 2087 4.042187 AGTTTCTCTAAGGCTGGTCACAAT 59.958 41.667 0.00 0.00 0.00 2.71
2036 2088 3.616956 TCTCTAAGGCTGGTCACAATG 57.383 47.619 0.00 0.00 0.00 2.82
2037 2089 2.237143 TCTCTAAGGCTGGTCACAATGG 59.763 50.000 0.00 0.00 0.00 3.16
2038 2090 1.281867 TCTAAGGCTGGTCACAATGGG 59.718 52.381 0.00 0.00 0.00 4.00
2039 2091 0.323360 TAAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
2040 2092 2.283101 GGCTGGTCACAATGGGCA 60.283 61.111 0.00 0.00 0.00 5.36
2041 2093 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
2042 2094 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
2043 2095 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
2044 2096 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
2045 2097 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
2046 2098 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
2047 2099 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
2048 2100 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
2049 2101 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
2050 2102 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
2051 2103 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
2052 2104 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
2053 2105 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
2054 2106 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
2055 2107 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
2056 2108 3.609853 TGGGCAAGAACATAAGCTAGTG 58.390 45.455 0.00 0.00 0.00 2.74
2057 2109 3.263170 TGGGCAAGAACATAAGCTAGTGA 59.737 43.478 5.37 0.00 0.00 3.41
2058 2110 3.623510 GGGCAAGAACATAAGCTAGTGAC 59.376 47.826 5.37 0.39 0.00 3.67
2059 2111 4.508662 GGCAAGAACATAAGCTAGTGACT 58.491 43.478 5.37 0.00 0.00 3.41
2060 2112 4.938226 GGCAAGAACATAAGCTAGTGACTT 59.062 41.667 5.37 7.22 0.00 3.01
2061 2113 6.106673 GGCAAGAACATAAGCTAGTGACTTA 58.893 40.000 5.37 0.00 34.29 2.24
2062 2114 6.036191 GGCAAGAACATAAGCTAGTGACTTAC 59.964 42.308 5.37 5.47 32.67 2.34
2063 2115 6.590292 GCAAGAACATAAGCTAGTGACTTACA 59.410 38.462 5.37 0.00 32.67 2.41
2080 2132 8.234136 TGACTTACACACTTCCCTATACTATG 57.766 38.462 0.00 0.00 0.00 2.23
2081 2133 7.837689 TGACTTACACACTTCCCTATACTATGT 59.162 37.037 0.00 0.00 0.00 2.29
2082 2134 8.605325 ACTTACACACTTCCCTATACTATGTT 57.395 34.615 0.00 0.00 0.00 2.71
2083 2135 9.705103 ACTTACACACTTCCCTATACTATGTTA 57.295 33.333 0.00 0.00 0.00 2.41
2084 2136 9.962783 CTTACACACTTCCCTATACTATGTTAC 57.037 37.037 0.00 0.00 0.00 2.50
2085 2137 9.705103 TTACACACTTCCCTATACTATGTTACT 57.295 33.333 0.00 0.00 0.00 2.24
2087 2139 9.878737 ACACACTTCCCTATACTATGTTACTAT 57.121 33.333 0.00 0.00 0.00 2.12
2105 2157 9.916360 TGTTACTATCTTCATAGTGAGTAGGAA 57.084 33.333 5.12 0.00 44.33 3.36
2107 2159 9.916360 TTACTATCTTCATAGTGAGTAGGAACA 57.084 33.333 5.12 0.00 44.33 3.18
2109 2161 9.073475 ACTATCTTCATAGTGAGTAGGAACATC 57.927 37.037 0.00 0.00 43.21 3.06
2110 2162 9.295825 CTATCTTCATAGTGAGTAGGAACATCT 57.704 37.037 0.00 0.00 28.58 2.90
2112 2164 9.821240 ATCTTCATAGTGAGTAGGAACATCTAT 57.179 33.333 0.00 0.00 28.58 1.98
2113 2165 9.072375 TCTTCATAGTGAGTAGGAACATCTATG 57.928 37.037 0.00 0.00 36.42 2.23
2114 2166 8.768501 TTCATAGTGAGTAGGAACATCTATGT 57.231 34.615 0.00 0.00 44.20 2.29
2115 2167 9.862149 TTCATAGTGAGTAGGAACATCTATGTA 57.138 33.333 0.00 0.00 40.80 2.29
2116 2168 9.508642 TCATAGTGAGTAGGAACATCTATGTAG 57.491 37.037 0.00 0.00 40.80 2.74
2117 2169 9.290988 CATAGTGAGTAGGAACATCTATGTAGT 57.709 37.037 0.00 0.00 40.80 2.73
2118 2170 7.575414 AGTGAGTAGGAACATCTATGTAGTG 57.425 40.000 0.00 0.00 40.80 2.74
2119 2171 7.120051 AGTGAGTAGGAACATCTATGTAGTGT 58.880 38.462 0.00 0.00 40.80 3.55
2120 2172 7.283580 AGTGAGTAGGAACATCTATGTAGTGTC 59.716 40.741 0.00 0.00 40.80 3.67
2121 2173 7.067129 GTGAGTAGGAACATCTATGTAGTGTCA 59.933 40.741 0.00 0.00 40.80 3.58
2122 2174 7.780271 TGAGTAGGAACATCTATGTAGTGTCAT 59.220 37.037 0.00 0.00 40.80 3.06
2123 2175 7.946207 AGTAGGAACATCTATGTAGTGTCATG 58.054 38.462 0.00 0.00 40.80 3.07
2124 2176 5.605534 AGGAACATCTATGTAGTGTCATGC 58.394 41.667 0.00 0.00 40.80 4.06
2125 2177 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
2126 2178 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
2127 2179 6.238211 GGAACATCTATGTAGTGTCATGCAAC 60.238 42.308 0.00 0.00 40.80 4.17
2128 2180 4.805719 ACATCTATGTAGTGTCATGCAACG 59.194 41.667 0.00 0.00 39.68 4.10
2129 2181 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
2130 2182 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
2131 2183 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
2132 2184 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
2133 2185 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
2134 2186 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
2135 2187 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
2136 2188 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
2137 2189 6.814146 TGTAGTGTCATGCAACGATGTATTTA 59.186 34.615 0.00 0.00 28.42 1.40
2138 2190 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
2139 2191 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
2140 2192 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
2141 2193 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
2142 2194 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
2143 2195 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
2144 2196 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
2145 2197 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
2164 2216 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
2165 2217 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
2166 2218 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
2167 2219 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
2168 2220 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
2169 2221 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
2170 2222 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
2171 2223 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
2172 2224 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
2173 2225 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
2174 2226 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
2175 2227 4.898829 TTGTTTCTTGGAGTGTGTGATG 57.101 40.909 0.00 0.00 0.00 3.07
2176 2228 3.884895 TGTTTCTTGGAGTGTGTGATGT 58.115 40.909 0.00 0.00 0.00 3.06
2177 2229 4.269183 TGTTTCTTGGAGTGTGTGATGTT 58.731 39.130 0.00 0.00 0.00 2.71
2178 2230 4.335315 TGTTTCTTGGAGTGTGTGATGTTC 59.665 41.667 0.00 0.00 0.00 3.18
2179 2231 3.126001 TCTTGGAGTGTGTGATGTTCC 57.874 47.619 0.00 0.00 0.00 3.62
2180 2232 1.800586 CTTGGAGTGTGTGATGTTCCG 59.199 52.381 0.00 0.00 0.00 4.30
2181 2233 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.000 0.00 0.00 0.00 5.14
2182 2234 0.034896 GGAGTGTGTGATGTTCCGGT 59.965 55.000 0.00 0.00 0.00 5.28
2183 2235 1.274167 GGAGTGTGTGATGTTCCGGTA 59.726 52.381 0.00 0.00 0.00 4.02
2184 2236 2.289195 GGAGTGTGTGATGTTCCGGTAA 60.289 50.000 0.00 0.00 0.00 2.85
2185 2237 2.735134 GAGTGTGTGATGTTCCGGTAAC 59.265 50.000 0.00 5.56 38.67 2.50
2186 2238 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
2187 2239 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
2188 2240 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
2189 2241 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
2190 2242 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
2191 2243 3.259876 TGTGATGTTCCGGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
2192 2244 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
2193 2245 5.041940 GTGATGTTCCGGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
2194 2246 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
2196 2248 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
2205 2257 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
2206 2258 5.422214 ACTTAGCTAGTTACCACAAGCAT 57.578 39.130 0.00 0.00 37.44 3.79
2207 2259 5.420409 ACTTAGCTAGTTACCACAAGCATC 58.580 41.667 0.00 0.00 37.44 3.91
2208 2260 5.187967 ACTTAGCTAGTTACCACAAGCATCT 59.812 40.000 0.00 0.00 37.44 2.90
2209 2261 4.130286 AGCTAGTTACCACAAGCATCTC 57.870 45.455 0.00 0.00 37.44 2.75
2210 2262 3.772025 AGCTAGTTACCACAAGCATCTCT 59.228 43.478 0.00 0.00 37.44 3.10
2211 2263 4.116238 GCTAGTTACCACAAGCATCTCTC 58.884 47.826 0.00 0.00 35.05 3.20
2212 2264 4.142049 GCTAGTTACCACAAGCATCTCTCT 60.142 45.833 0.00 0.00 35.05 3.10
2213 2265 4.464069 AGTTACCACAAGCATCTCTCTC 57.536 45.455 0.00 0.00 0.00 3.20
2214 2266 4.093011 AGTTACCACAAGCATCTCTCTCT 58.907 43.478 0.00 0.00 0.00 3.10
2215 2267 4.530161 AGTTACCACAAGCATCTCTCTCTT 59.470 41.667 0.00 0.00 0.00 2.85
2216 2268 3.608316 ACCACAAGCATCTCTCTCTTC 57.392 47.619 0.00 0.00 0.00 2.87
2217 2269 2.902486 ACCACAAGCATCTCTCTCTTCA 59.098 45.455 0.00 0.00 0.00 3.02
2218 2270 3.518705 ACCACAAGCATCTCTCTCTTCAT 59.481 43.478 0.00 0.00 0.00 2.57
2219 2271 4.019501 ACCACAAGCATCTCTCTCTTCATT 60.020 41.667 0.00 0.00 0.00 2.57
2220 2272 5.188555 ACCACAAGCATCTCTCTCTTCATTA 59.811 40.000 0.00 0.00 0.00 1.90
2221 2273 6.111382 CCACAAGCATCTCTCTCTTCATTAA 58.889 40.000 0.00 0.00 0.00 1.40
2222 2274 6.596888 CCACAAGCATCTCTCTCTTCATTAAA 59.403 38.462 0.00 0.00 0.00 1.52
2223 2275 7.282675 CCACAAGCATCTCTCTCTTCATTAAAT 59.717 37.037 0.00 0.00 0.00 1.40
2224 2276 9.322773 CACAAGCATCTCTCTCTTCATTAAATA 57.677 33.333 0.00 0.00 0.00 1.40
2225 2277 9.323985 ACAAGCATCTCTCTCTTCATTAAATAC 57.676 33.333 0.00 0.00 0.00 1.89
2226 2278 8.486383 CAAGCATCTCTCTCTTCATTAAATACG 58.514 37.037 0.00 0.00 0.00 3.06
2227 2279 7.721402 AGCATCTCTCTCTTCATTAAATACGT 58.279 34.615 0.00 0.00 0.00 3.57
2228 2280 7.651304 AGCATCTCTCTCTTCATTAAATACGTG 59.349 37.037 0.00 0.00 0.00 4.49
2229 2281 7.568497 GCATCTCTCTCTTCATTAAATACGTGC 60.568 40.741 0.00 0.00 0.00 5.34
2230 2282 6.273825 TCTCTCTCTTCATTAAATACGTGCC 58.726 40.000 0.00 0.00 0.00 5.01
2231 2283 5.972935 TCTCTCTTCATTAAATACGTGCCA 58.027 37.500 0.00 0.00 0.00 4.92
2232 2284 5.810587 TCTCTCTTCATTAAATACGTGCCAC 59.189 40.000 0.00 0.00 0.00 5.01
2233 2285 5.483811 TCTCTTCATTAAATACGTGCCACA 58.516 37.500 0.00 0.00 0.00 4.17
2234 2286 6.112734 TCTCTTCATTAAATACGTGCCACAT 58.887 36.000 0.00 0.00 0.00 3.21
2235 2287 7.269316 TCTCTTCATTAAATACGTGCCACATA 58.731 34.615 0.00 0.00 0.00 2.29
2236 2288 7.766738 TCTCTTCATTAAATACGTGCCACATAA 59.233 33.333 0.00 0.00 0.00 1.90
2237 2289 7.915508 TCTTCATTAAATACGTGCCACATAAG 58.084 34.615 0.00 0.00 0.00 1.73
2238 2290 6.055231 TCATTAAATACGTGCCACATAAGC 57.945 37.500 0.00 0.00 0.00 3.09
2239 2291 5.586643 TCATTAAATACGTGCCACATAAGCA 59.413 36.000 0.00 0.00 38.08 3.91
2240 2292 5.881777 TTAAATACGTGCCACATAAGCAA 57.118 34.783 0.00 0.00 43.02 3.91
2241 2293 4.775058 AAATACGTGCCACATAAGCAAA 57.225 36.364 0.00 0.00 43.02 3.68
2242 2294 4.355543 AATACGTGCCACATAAGCAAAG 57.644 40.909 0.00 0.00 43.02 2.77
2243 2295 1.604604 ACGTGCCACATAAGCAAAGT 58.395 45.000 0.00 0.00 43.02 2.66
2244 2296 1.953686 ACGTGCCACATAAGCAAAGTT 59.046 42.857 0.00 0.00 43.02 2.66
2245 2297 2.287547 ACGTGCCACATAAGCAAAGTTG 60.288 45.455 0.00 0.00 43.02 3.16
2246 2298 2.287547 CGTGCCACATAAGCAAAGTTGT 60.288 45.455 0.00 0.00 43.02 3.32
2247 2299 3.058570 CGTGCCACATAAGCAAAGTTGTA 60.059 43.478 0.00 0.00 43.02 2.41
2248 2300 4.379394 CGTGCCACATAAGCAAAGTTGTAT 60.379 41.667 0.00 0.00 43.02 2.29
2249 2301 5.469479 GTGCCACATAAGCAAAGTTGTATT 58.531 37.500 0.00 0.00 43.02 1.89
2250 2302 6.616947 GTGCCACATAAGCAAAGTTGTATTA 58.383 36.000 0.00 0.00 43.02 0.98
2251 2303 6.747280 GTGCCACATAAGCAAAGTTGTATTAG 59.253 38.462 0.00 0.00 43.02 1.73
2252 2304 6.657117 TGCCACATAAGCAAAGTTGTATTAGA 59.343 34.615 0.00 0.00 37.28 2.10
2253 2305 7.148255 TGCCACATAAGCAAAGTTGTATTAGAG 60.148 37.037 0.00 0.00 37.28 2.43
2254 2306 7.148239 GCCACATAAGCAAAGTTGTATTAGAGT 60.148 37.037 0.00 0.00 0.00 3.24
2255 2307 8.177663 CCACATAAGCAAAGTTGTATTAGAGTG 58.822 37.037 0.00 12.86 31.30 3.51
2256 2308 8.721478 CACATAAGCAAAGTTGTATTAGAGTGT 58.279 33.333 0.00 0.00 0.00 3.55
2257 2309 8.721478 ACATAAGCAAAGTTGTATTAGAGTGTG 58.279 33.333 0.00 0.00 0.00 3.82
2258 2310 8.721478 CATAAGCAAAGTTGTATTAGAGTGTGT 58.279 33.333 0.00 0.00 0.00 3.72
2259 2311 6.545504 AGCAAAGTTGTATTAGAGTGTGTG 57.454 37.500 0.00 0.00 0.00 3.82
2260 2312 6.288294 AGCAAAGTTGTATTAGAGTGTGTGA 58.712 36.000 0.00 0.00 0.00 3.58
2261 2313 6.936900 AGCAAAGTTGTATTAGAGTGTGTGAT 59.063 34.615 0.00 0.00 0.00 3.06
2262 2314 7.017645 GCAAAGTTGTATTAGAGTGTGTGATG 58.982 38.462 0.00 0.00 0.00 3.07
2263 2315 7.307989 GCAAAGTTGTATTAGAGTGTGTGATGT 60.308 37.037 0.00 0.00 0.00 3.06
2264 2316 8.559536 CAAAGTTGTATTAGAGTGTGTGATGTT 58.440 33.333 0.00 0.00 0.00 2.71
2265 2317 9.772973 AAAGTTGTATTAGAGTGTGTGATGTTA 57.227 29.630 0.00 0.00 0.00 2.41
2266 2318 8.758633 AGTTGTATTAGAGTGTGTGATGTTAC 57.241 34.615 0.00 0.00 0.00 2.50
2267 2319 8.585881 AGTTGTATTAGAGTGTGTGATGTTACT 58.414 33.333 0.00 0.00 0.00 2.24
2268 2320 8.861101 GTTGTATTAGAGTGTGTGATGTTACTC 58.139 37.037 0.00 0.00 39.77 2.59
2269 2321 7.544622 TGTATTAGAGTGTGTGATGTTACTCC 58.455 38.462 0.00 0.00 40.21 3.85
2270 2322 6.859112 ATTAGAGTGTGTGATGTTACTCCT 57.141 37.500 0.00 0.00 40.21 3.69
2271 2323 7.956328 ATTAGAGTGTGTGATGTTACTCCTA 57.044 36.000 0.00 0.00 40.21 2.94
2272 2324 7.770366 TTAGAGTGTGTGATGTTACTCCTAA 57.230 36.000 0.00 0.00 40.21 2.69
2273 2325 6.274157 AGAGTGTGTGATGTTACTCCTAAG 57.726 41.667 0.00 0.00 40.21 2.18
2274 2326 5.775701 AGAGTGTGTGATGTTACTCCTAAGT 59.224 40.000 0.00 0.00 40.21 2.24
2275 2327 6.267928 AGAGTGTGTGATGTTACTCCTAAGTT 59.732 38.462 0.00 0.00 40.21 2.66
2276 2328 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
2277 2329 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
2278 2330 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
2279 2331 6.100668 GTGTGATGTTACTCCTAAGTTCCTC 58.899 44.000 0.00 0.00 36.92 3.71
2280 2332 5.187186 TGTGATGTTACTCCTAAGTTCCTCC 59.813 44.000 0.00 0.00 36.92 4.30
2281 2333 4.715297 TGATGTTACTCCTAAGTTCCTCCC 59.285 45.833 0.00 0.00 36.92 4.30
2282 2334 3.447950 TGTTACTCCTAAGTTCCTCCCC 58.552 50.000 0.00 0.00 36.92 4.81
2283 2335 3.181404 TGTTACTCCTAAGTTCCTCCCCA 60.181 47.826 0.00 0.00 36.92 4.96
2284 2336 1.954035 ACTCCTAAGTTCCTCCCCAC 58.046 55.000 0.00 0.00 28.74 4.61
2285 2337 1.437547 ACTCCTAAGTTCCTCCCCACT 59.562 52.381 0.00 0.00 28.74 4.00
2286 2338 1.834263 CTCCTAAGTTCCTCCCCACTG 59.166 57.143 0.00 0.00 0.00 3.66
2287 2339 1.151413 TCCTAAGTTCCTCCCCACTGT 59.849 52.381 0.00 0.00 0.00 3.55
2288 2340 1.279271 CCTAAGTTCCTCCCCACTGTG 59.721 57.143 0.00 0.00 0.00 3.66
2289 2341 2.257207 CTAAGTTCCTCCCCACTGTGA 58.743 52.381 9.86 0.00 0.00 3.58
2290 2342 0.765510 AAGTTCCTCCCCACTGTGAC 59.234 55.000 9.86 0.00 0.00 3.67
2291 2343 1.128188 AGTTCCTCCCCACTGTGACC 61.128 60.000 9.86 0.00 0.00 4.02
2292 2344 1.074090 TTCCTCCCCACTGTGACCA 60.074 57.895 9.86 0.00 0.00 4.02
2293 2345 1.127567 TTCCTCCCCACTGTGACCAG 61.128 60.000 9.86 1.37 44.68 4.00
2294 2346 2.348998 CTCCCCACTGTGACCAGC 59.651 66.667 9.86 0.00 42.81 4.85
2295 2347 3.249189 TCCCCACTGTGACCAGCC 61.249 66.667 9.86 0.00 42.81 4.85
2296 2348 3.252284 CCCCACTGTGACCAGCCT 61.252 66.667 9.86 0.00 42.81 4.58
2297 2349 1.918293 CCCCACTGTGACCAGCCTA 60.918 63.158 9.86 0.00 42.81 3.93
2298 2350 1.488705 CCCCACTGTGACCAGCCTAA 61.489 60.000 9.86 0.00 42.81 2.69
2299 2351 0.036010 CCCACTGTGACCAGCCTAAG 60.036 60.000 9.86 0.00 42.81 2.18
2305 2357 4.023707 CACTGTGACCAGCCTAAGAAAAAG 60.024 45.833 0.32 0.00 42.81 2.27
2307 2359 4.787551 TGTGACCAGCCTAAGAAAAAGAA 58.212 39.130 0.00 0.00 0.00 2.52
2323 2375 7.510407 AGAAAAAGAACTAGCCAGAAGTTACT 58.490 34.615 0.00 0.00 37.31 2.24
2350 2442 1.401018 GCATTGGGTGTCGTTACTTGC 60.401 52.381 0.00 0.00 0.00 4.01
2373 2465 3.005823 CGCATGCAAAAACGGAGAG 57.994 52.632 19.57 0.00 0.00 3.20
2549 2644 8.896320 AACAATATACTTTCGTACATGGCATA 57.104 30.769 0.00 0.00 0.00 3.14
2550 2645 8.534333 ACAATATACTTTCGTACATGGCATAG 57.466 34.615 0.00 0.00 0.00 2.23
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.483685 TTAAGATGTTGGTAGAGCACTGT 57.516 39.130 0.00 0.00 0.00 3.55
86 90 7.120923 GACTATTTGTCAAGTGGGGACTATA 57.879 40.000 0.00 0.00 44.73 1.31
118 122 5.768164 GTGGACTATTTGTCTCCCTCAAAAA 59.232 40.000 0.00 0.00 44.74 1.94
119 123 5.313712 GTGGACTATTTGTCTCCCTCAAAA 58.686 41.667 0.00 0.00 44.74 2.44
120 124 4.263331 GGTGGACTATTTGTCTCCCTCAAA 60.263 45.833 0.00 0.00 44.74 2.69
121 125 3.263425 GGTGGACTATTTGTCTCCCTCAA 59.737 47.826 0.00 0.00 44.74 3.02
122 126 2.838202 GGTGGACTATTTGTCTCCCTCA 59.162 50.000 0.00 0.00 44.74 3.86
123 127 3.108376 AGGTGGACTATTTGTCTCCCTC 58.892 50.000 0.00 0.00 44.74 4.30
124 128 3.207044 AGGTGGACTATTTGTCTCCCT 57.793 47.619 0.00 1.93 44.74 4.20
125 129 5.431179 TTTAGGTGGACTATTTGTCTCCC 57.569 43.478 0.00 0.00 44.74 4.30
126 130 6.650120 TCATTTAGGTGGACTATTTGTCTCC 58.350 40.000 0.00 2.64 44.74 3.71
127 131 7.606456 TGTTCATTTAGGTGGACTATTTGTCTC 59.394 37.037 0.00 0.00 44.74 3.36
128 132 7.458397 TGTTCATTTAGGTGGACTATTTGTCT 58.542 34.615 0.00 0.00 44.74 3.41
129 133 7.606456 TCTGTTCATTTAGGTGGACTATTTGTC 59.394 37.037 0.00 0.00 44.63 3.18
130 134 7.458397 TCTGTTCATTTAGGTGGACTATTTGT 58.542 34.615 0.00 0.00 0.00 2.83
131 135 7.921786 TCTGTTCATTTAGGTGGACTATTTG 57.078 36.000 0.00 0.00 0.00 2.32
132 136 8.934023 TTTCTGTTCATTTAGGTGGACTATTT 57.066 30.769 0.00 0.00 0.00 1.40
133 137 8.934023 TTTTCTGTTCATTTAGGTGGACTATT 57.066 30.769 0.00 0.00 0.00 1.73
134 138 8.960591 CATTTTCTGTTCATTTAGGTGGACTAT 58.039 33.333 0.00 0.00 0.00 2.12
135 139 7.942341 ACATTTTCTGTTCATTTAGGTGGACTA 59.058 33.333 0.00 0.00 32.90 2.59
136 140 6.777580 ACATTTTCTGTTCATTTAGGTGGACT 59.222 34.615 0.00 0.00 32.90 3.85
137 141 6.981722 ACATTTTCTGTTCATTTAGGTGGAC 58.018 36.000 0.00 0.00 32.90 4.02
138 142 7.004086 AGACATTTTCTGTTCATTTAGGTGGA 58.996 34.615 0.00 0.00 38.54 4.02
139 143 7.219484 AGACATTTTCTGTTCATTTAGGTGG 57.781 36.000 0.00 0.00 38.54 4.61
140 144 9.612620 GTAAGACATTTTCTGTTCATTTAGGTG 57.387 33.333 0.00 0.00 38.54 4.00
141 145 9.349713 TGTAAGACATTTTCTGTTCATTTAGGT 57.650 29.630 0.00 0.00 38.54 3.08
142 146 9.612620 GTGTAAGACATTTTCTGTTCATTTAGG 57.387 33.333 0.00 0.00 38.54 2.69
143 147 9.612620 GGTGTAAGACATTTTCTGTTCATTTAG 57.387 33.333 0.00 0.00 38.54 1.85
144 148 9.349713 AGGTGTAAGACATTTTCTGTTCATTTA 57.650 29.630 0.00 0.00 38.54 1.40
298 306 0.179124 GCTCGGTGATGGTCACTCTC 60.179 60.000 9.66 0.00 46.19 3.20
1624 1670 2.039613 CCATGAAGGGCCTAGATCTTCC 59.960 54.545 6.41 0.00 36.88 3.46
1667 1713 6.129874 AGAAAGAGGAAGGCAGTTACTTTTT 58.870 36.000 0.00 0.00 36.35 1.94
1668 1714 5.696030 AGAAAGAGGAAGGCAGTTACTTTT 58.304 37.500 0.00 0.00 24.37 2.27
1669 1715 5.311844 AGAAAGAGGAAGGCAGTTACTTT 57.688 39.130 0.00 0.00 24.37 2.66
1670 1716 4.984146 AGAAAGAGGAAGGCAGTTACTT 57.016 40.909 0.00 0.00 24.37 2.24
1694 1740 0.179084 GGCAGCTAATGGCGTCAGTA 60.179 55.000 0.00 0.00 45.54 2.74
1727 1773 2.192861 CAGCTCCGGTGGTTTTGCA 61.193 57.895 5.29 0.00 0.00 4.08
1733 1779 3.775654 GCTAGCAGCTCCGGTGGT 61.776 66.667 10.63 0.35 43.99 4.16
1761 1807 0.514691 GGCGAAGTGACAGCTGAAAG 59.485 55.000 23.35 5.30 0.00 2.62
1764 1810 2.049156 CGGCGAAGTGACAGCTGA 60.049 61.111 23.35 0.00 39.46 4.26
1792 1838 2.358125 TTCACACATCCACGCCGG 60.358 61.111 0.00 0.00 0.00 6.13
1795 1841 0.320771 ACCTCTTCACACATCCACGC 60.321 55.000 0.00 0.00 0.00 5.34
1796 1842 1.000843 TCACCTCTTCACACATCCACG 59.999 52.381 0.00 0.00 0.00 4.94
1804 1850 1.123077 ACTGCACTCACCTCTTCACA 58.877 50.000 0.00 0.00 0.00 3.58
1806 1852 1.273606 GCTACTGCACTCACCTCTTCA 59.726 52.381 0.00 0.00 39.41 3.02
1851 1897 6.099125 TGCACTTATAGGTGGATAGCAGTAAA 59.901 38.462 15.95 0.00 37.65 2.01
1852 1898 5.600898 TGCACTTATAGGTGGATAGCAGTAA 59.399 40.000 15.95 0.00 37.65 2.24
1869 1915 7.281324 AGTTAAATAATACGGTGCATGCACTTA 59.719 33.333 40.86 31.88 45.52 2.24
1901 1947 1.669999 TAGGGGGCTACGCGTTCTTC 61.670 60.000 20.78 5.37 37.07 2.87
1912 1958 1.229658 AGAACAGTGCTAGGGGGCT 60.230 57.895 0.00 0.00 0.00 5.19
1916 1962 2.103042 GCGCAGAACAGTGCTAGGG 61.103 63.158 0.30 0.00 41.62 3.53
1937 1983 1.961394 TCCAGTCGCTGAACAGTACTT 59.039 47.619 8.20 0.00 32.44 2.24
1940 1986 0.240145 CGTCCAGTCGCTGAACAGTA 59.760 55.000 8.20 0.00 32.44 2.74
1941 1987 1.007271 CGTCCAGTCGCTGAACAGT 60.007 57.895 8.20 0.00 32.44 3.55
1942 1988 0.730834 CTCGTCCAGTCGCTGAACAG 60.731 60.000 8.20 0.00 32.44 3.16
1943 1989 1.285950 CTCGTCCAGTCGCTGAACA 59.714 57.895 8.20 0.00 32.44 3.18
1944 1990 0.729816 GACTCGTCCAGTCGCTGAAC 60.730 60.000 8.20 0.00 42.43 3.18
1945 1991 1.579932 GACTCGTCCAGTCGCTGAA 59.420 57.895 8.20 0.00 42.43 3.02
1946 1992 3.264947 GACTCGTCCAGTCGCTGA 58.735 61.111 8.20 0.00 42.43 4.26
2019 2071 1.755179 CCCATTGTGACCAGCCTTAG 58.245 55.000 0.00 0.00 0.00 2.18
2020 2072 0.323360 GCCCATTGTGACCAGCCTTA 60.323 55.000 0.00 0.00 0.00 2.69
2021 2073 1.607467 GCCCATTGTGACCAGCCTT 60.607 57.895 0.00 0.00 0.00 4.35
2022 2074 2.036256 GCCCATTGTGACCAGCCT 59.964 61.111 0.00 0.00 0.00 4.58
2023 2075 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
2024 2076 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
2025 2077 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
2026 2078 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
2027 2079 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
2028 2080 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
2029 2081 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
2030 2082 3.194116 AGCTTATGTTCTTGCCCATTGTG 59.806 43.478 0.00 0.00 0.00 3.33
2031 2083 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
2032 2084 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
2033 2085 4.641989 CACTAGCTTATGTTCTTGCCCATT 59.358 41.667 0.00 0.00 0.00 3.16
2034 2086 4.080356 TCACTAGCTTATGTTCTTGCCCAT 60.080 41.667 0.00 0.00 0.00 4.00
2035 2087 3.263170 TCACTAGCTTATGTTCTTGCCCA 59.737 43.478 0.00 0.00 0.00 5.36
2036 2088 3.623510 GTCACTAGCTTATGTTCTTGCCC 59.376 47.826 0.00 0.00 0.00 5.36
2037 2089 4.508662 AGTCACTAGCTTATGTTCTTGCC 58.491 43.478 0.00 0.00 0.00 4.52
2038 2090 6.590292 TGTAAGTCACTAGCTTATGTTCTTGC 59.410 38.462 0.00 5.41 32.01 4.01
2039 2091 7.598869 TGTGTAAGTCACTAGCTTATGTTCTTG 59.401 37.037 0.00 0.00 46.27 3.02
2040 2092 7.599245 GTGTGTAAGTCACTAGCTTATGTTCTT 59.401 37.037 0.00 3.87 46.27 2.52
2041 2093 7.039644 AGTGTGTAAGTCACTAGCTTATGTTCT 60.040 37.037 0.00 0.00 46.27 3.01
2042 2094 7.091443 AGTGTGTAAGTCACTAGCTTATGTTC 58.909 38.462 0.00 0.00 46.27 3.18
2043 2095 6.994221 AGTGTGTAAGTCACTAGCTTATGTT 58.006 36.000 0.00 0.00 46.27 2.71
2044 2096 6.591750 AGTGTGTAAGTCACTAGCTTATGT 57.408 37.500 0.00 0.00 46.27 2.29
2045 2097 6.531948 GGAAGTGTGTAAGTCACTAGCTTATG 59.468 42.308 0.00 0.00 44.03 1.90
2046 2098 6.351117 GGGAAGTGTGTAAGTCACTAGCTTAT 60.351 42.308 0.00 0.00 44.03 1.73
2047 2099 5.047519 GGGAAGTGTGTAAGTCACTAGCTTA 60.048 44.000 0.00 0.00 44.03 3.09
2048 2100 4.262506 GGGAAGTGTGTAAGTCACTAGCTT 60.263 45.833 0.00 0.00 44.03 3.74
2049 2101 3.258622 GGGAAGTGTGTAAGTCACTAGCT 59.741 47.826 0.00 0.00 44.03 3.32
2050 2102 3.258622 AGGGAAGTGTGTAAGTCACTAGC 59.741 47.826 0.00 0.00 44.03 3.42
2051 2103 6.777213 ATAGGGAAGTGTGTAAGTCACTAG 57.223 41.667 0.00 0.00 44.03 2.57
2052 2104 7.408543 AGTATAGGGAAGTGTGTAAGTCACTA 58.591 38.462 0.00 0.00 44.03 2.74
2053 2105 6.254522 AGTATAGGGAAGTGTGTAAGTCACT 58.745 40.000 0.00 0.00 46.30 3.41
2054 2106 6.527057 AGTATAGGGAAGTGTGTAAGTCAC 57.473 41.667 0.00 0.00 46.31 3.67
2055 2107 7.837689 ACATAGTATAGGGAAGTGTGTAAGTCA 59.162 37.037 0.00 0.00 0.00 3.41
2056 2108 8.235359 ACATAGTATAGGGAAGTGTGTAAGTC 57.765 38.462 0.00 0.00 0.00 3.01
2057 2109 8.605325 AACATAGTATAGGGAAGTGTGTAAGT 57.395 34.615 0.00 0.00 0.00 2.24
2058 2110 9.962783 GTAACATAGTATAGGGAAGTGTGTAAG 57.037 37.037 0.00 0.00 0.00 2.34
2059 2111 9.705103 AGTAACATAGTATAGGGAAGTGTGTAA 57.295 33.333 0.00 0.00 0.00 2.41
2061 2113 9.878737 ATAGTAACATAGTATAGGGAAGTGTGT 57.121 33.333 0.00 0.00 0.00 3.72
2079 2131 9.916360 TTCCTACTCACTATGAAGATAGTAACA 57.084 33.333 0.00 0.00 42.55 2.41
2081 2133 9.916360 TGTTCCTACTCACTATGAAGATAGTAA 57.084 33.333 0.00 0.00 42.55 2.24
2083 2135 9.073475 GATGTTCCTACTCACTATGAAGATAGT 57.927 37.037 0.00 0.00 44.86 2.12
2084 2136 9.295825 AGATGTTCCTACTCACTATGAAGATAG 57.704 37.037 0.00 0.00 38.06 2.08
2086 2138 9.821240 ATAGATGTTCCTACTCACTATGAAGAT 57.179 33.333 0.00 0.00 0.00 2.40
2087 2139 9.072375 CATAGATGTTCCTACTCACTATGAAGA 57.928 37.037 0.00 0.00 36.16 2.87
2088 2140 8.855110 ACATAGATGTTCCTACTCACTATGAAG 58.145 37.037 1.97 0.00 37.90 3.02
2089 2141 8.768501 ACATAGATGTTCCTACTCACTATGAA 57.231 34.615 1.97 0.00 37.90 2.57
2090 2142 9.508642 CTACATAGATGTTCCTACTCACTATGA 57.491 37.037 1.97 0.00 41.97 2.15
2091 2143 9.290988 ACTACATAGATGTTCCTACTCACTATG 57.709 37.037 0.00 0.00 41.97 2.23
2092 2144 9.290988 CACTACATAGATGTTCCTACTCACTAT 57.709 37.037 0.00 0.00 41.97 2.12
2093 2145 8.272889 ACACTACATAGATGTTCCTACTCACTA 58.727 37.037 0.00 0.00 41.97 2.74
2094 2146 7.120051 ACACTACATAGATGTTCCTACTCACT 58.880 38.462 0.00 0.00 41.97 3.41
2095 2147 7.067129 TGACACTACATAGATGTTCCTACTCAC 59.933 40.741 0.00 0.00 41.97 3.51
2096 2148 7.116736 TGACACTACATAGATGTTCCTACTCA 58.883 38.462 0.00 0.00 41.97 3.41
2097 2149 7.569639 TGACACTACATAGATGTTCCTACTC 57.430 40.000 0.00 0.00 41.97 2.59
2098 2150 7.470702 GCATGACACTACATAGATGTTCCTACT 60.471 40.741 0.00 0.00 41.97 2.57
2099 2151 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
2100 2152 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
2101 2153 5.129320 TGCATGACACTACATAGATGTTCCT 59.871 40.000 0.00 0.00 41.97 3.36
2102 2154 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
2103 2155 6.508563 CGTTGCATGACACTACATAGATGTTC 60.509 42.308 0.00 0.00 41.97 3.18
2104 2156 5.291858 CGTTGCATGACACTACATAGATGTT 59.708 40.000 0.00 0.00 41.97 2.71
2105 2157 4.805719 CGTTGCATGACACTACATAGATGT 59.194 41.667 0.00 0.08 44.48 3.06
2106 2158 5.043248 TCGTTGCATGACACTACATAGATG 58.957 41.667 0.00 0.00 0.00 2.90
2107 2159 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
2108 2160 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
2109 2161 4.805719 ACATCGTTGCATGACACTACATAG 59.194 41.667 0.00 0.00 0.00 2.23
2110 2162 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
2111 2163 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
2112 2164 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
2113 2165 5.718649 AATACATCGTTGCATGACACTAC 57.281 39.130 0.00 0.00 0.00 2.73
2114 2166 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
2115 2167 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
2116 2168 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
2117 2169 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
2118 2170 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
2119 2171 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
2138 2190 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
2139 2191 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
2140 2192 7.918076 TCCAAGAAACAATGAGTCTATAACCT 58.082 34.615 0.00 0.00 0.00 3.50
2141 2193 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
2142 2194 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
2143 2195 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
2144 2196 7.819415 CACACTCCAAGAAACAATGAGTCTATA 59.181 37.037 0.00 0.00 34.21 1.31
2145 2197 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
2146 2198 5.991606 CACACTCCAAGAAACAATGAGTCTA 59.008 40.000 0.00 0.00 34.21 2.59
2147 2199 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
2148 2200 4.576463 ACACACTCCAAGAAACAATGAGTC 59.424 41.667 0.00 0.00 34.21 3.36
2149 2201 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
2150 2202 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
2151 2203 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
2152 2204 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
2153 2205 4.889409 ACATCACACACTCCAAGAAACAAT 59.111 37.500 0.00 0.00 0.00 2.71
2154 2206 4.269183 ACATCACACACTCCAAGAAACAA 58.731 39.130 0.00 0.00 0.00 2.83
2155 2207 3.884895 ACATCACACACTCCAAGAAACA 58.115 40.909 0.00 0.00 0.00 2.83
2156 2208 4.261197 GGAACATCACACACTCCAAGAAAC 60.261 45.833 0.00 0.00 0.00 2.78
2157 2209 3.882888 GGAACATCACACACTCCAAGAAA 59.117 43.478 0.00 0.00 0.00 2.52
2158 2210 3.476552 GGAACATCACACACTCCAAGAA 58.523 45.455 0.00 0.00 0.00 2.52
2159 2211 2.547855 CGGAACATCACACACTCCAAGA 60.548 50.000 0.00 0.00 0.00 3.02
2160 2212 1.800586 CGGAACATCACACACTCCAAG 59.199 52.381 0.00 0.00 0.00 3.61
2161 2213 1.542328 CCGGAACATCACACACTCCAA 60.542 52.381 0.00 0.00 0.00 3.53
2162 2214 0.034756 CCGGAACATCACACACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
2163 2215 0.034896 ACCGGAACATCACACACTCC 59.965 55.000 9.46 0.00 0.00 3.85
2164 2216 2.735134 GTTACCGGAACATCACACACTC 59.265 50.000 9.46 0.00 38.02 3.51
2165 2217 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
2166 2218 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
2167 2219 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
2168 2220 3.370061 GCTAAGTTACCGGAACATCACAC 59.630 47.826 9.46 0.00 40.86 3.82
2169 2221 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
2170 2222 3.858247 AGCTAAGTTACCGGAACATCAC 58.142 45.455 9.46 0.66 40.86 3.06
2171 2223 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
2172 2224 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
2173 2225 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
2190 2242 5.359576 AGAGAGAGATGCTTGTGGTAACTAG 59.640 44.000 0.00 0.00 37.61 2.57
2191 2243 5.265191 AGAGAGAGATGCTTGTGGTAACTA 58.735 41.667 0.00 0.00 37.61 2.24
2192 2244 4.093011 AGAGAGAGATGCTTGTGGTAACT 58.907 43.478 0.00 0.00 37.61 2.24
2193 2245 4.464069 AGAGAGAGATGCTTGTGGTAAC 57.536 45.455 0.00 0.00 0.00 2.50
2194 2246 4.528206 TGAAGAGAGAGATGCTTGTGGTAA 59.472 41.667 0.00 0.00 0.00 2.85
2195 2247 4.089361 TGAAGAGAGAGATGCTTGTGGTA 58.911 43.478 0.00 0.00 0.00 3.25
2196 2248 2.902486 TGAAGAGAGAGATGCTTGTGGT 59.098 45.455 0.00 0.00 0.00 4.16
2197 2249 3.606595 TGAAGAGAGAGATGCTTGTGG 57.393 47.619 0.00 0.00 0.00 4.17
2198 2250 7.606858 TTTAATGAAGAGAGAGATGCTTGTG 57.393 36.000 0.00 0.00 0.00 3.33
2199 2251 9.323985 GTATTTAATGAAGAGAGAGATGCTTGT 57.676 33.333 0.00 0.00 0.00 3.16
2200 2252 8.486383 CGTATTTAATGAAGAGAGAGATGCTTG 58.514 37.037 0.00 0.00 0.00 4.01
2201 2253 8.200792 ACGTATTTAATGAAGAGAGAGATGCTT 58.799 33.333 0.00 0.00 0.00 3.91
2202 2254 7.651304 CACGTATTTAATGAAGAGAGAGATGCT 59.349 37.037 0.00 0.00 0.00 3.79
2203 2255 7.568497 GCACGTATTTAATGAAGAGAGAGATGC 60.568 40.741 0.00 0.00 0.00 3.91
2204 2256 7.095857 GGCACGTATTTAATGAAGAGAGAGATG 60.096 40.741 0.00 0.00 0.00 2.90
2205 2257 6.926272 GGCACGTATTTAATGAAGAGAGAGAT 59.074 38.462 0.00 0.00 0.00 2.75
2206 2258 6.127451 TGGCACGTATTTAATGAAGAGAGAGA 60.127 38.462 0.00 0.00 0.00 3.10
2207 2259 6.019479 GTGGCACGTATTTAATGAAGAGAGAG 60.019 42.308 0.00 0.00 0.00 3.20
2208 2260 5.810587 GTGGCACGTATTTAATGAAGAGAGA 59.189 40.000 0.00 0.00 0.00 3.10
2209 2261 5.580691 TGTGGCACGTATTTAATGAAGAGAG 59.419 40.000 13.77 0.00 0.00 3.20
2210 2262 5.483811 TGTGGCACGTATTTAATGAAGAGA 58.516 37.500 13.77 0.00 0.00 3.10
2211 2263 5.794687 TGTGGCACGTATTTAATGAAGAG 57.205 39.130 13.77 0.00 0.00 2.85
2212 2264 7.466725 GCTTATGTGGCACGTATTTAATGAAGA 60.467 37.037 19.55 0.94 0.00 2.87
2213 2265 6.632834 GCTTATGTGGCACGTATTTAATGAAG 59.367 38.462 19.55 13.80 0.00 3.02
2214 2266 6.094186 TGCTTATGTGGCACGTATTTAATGAA 59.906 34.615 19.55 4.06 34.56 2.57
2215 2267 5.586643 TGCTTATGTGGCACGTATTTAATGA 59.413 36.000 19.55 3.01 34.56 2.57
2216 2268 5.815850 TGCTTATGTGGCACGTATTTAATG 58.184 37.500 19.55 4.53 34.56 1.90
2217 2269 6.443934 TTGCTTATGTGGCACGTATTTAAT 57.556 33.333 19.55 5.08 39.55 1.40
2218 2270 5.881777 TTGCTTATGTGGCACGTATTTAA 57.118 34.783 19.55 11.84 39.55 1.52
2219 2271 5.413213 ACTTTGCTTATGTGGCACGTATTTA 59.587 36.000 19.55 5.10 39.55 1.40
2220 2272 4.217550 ACTTTGCTTATGTGGCACGTATTT 59.782 37.500 19.55 1.66 39.55 1.40
2221 2273 3.756434 ACTTTGCTTATGTGGCACGTATT 59.244 39.130 19.55 4.10 39.55 1.89
2222 2274 3.343617 ACTTTGCTTATGTGGCACGTAT 58.656 40.909 19.55 7.98 39.55 3.06
2223 2275 2.773487 ACTTTGCTTATGTGGCACGTA 58.227 42.857 15.38 15.38 39.55 3.57
2224 2276 1.604604 ACTTTGCTTATGTGGCACGT 58.395 45.000 17.65 17.65 39.55 4.49
2225 2277 2.287547 ACAACTTTGCTTATGTGGCACG 60.288 45.455 13.77 0.00 39.55 5.34
2226 2278 3.369546 ACAACTTTGCTTATGTGGCAC 57.630 42.857 11.55 11.55 39.55 5.01
2227 2279 5.720371 AATACAACTTTGCTTATGTGGCA 57.280 34.783 0.00 0.00 37.97 4.92
2228 2280 7.083875 TCTAATACAACTTTGCTTATGTGGC 57.916 36.000 0.00 0.00 0.00 5.01
2229 2281 8.177663 CACTCTAATACAACTTTGCTTATGTGG 58.822 37.037 0.00 0.00 0.00 4.17
2230 2282 8.721478 ACACTCTAATACAACTTTGCTTATGTG 58.279 33.333 0.00 0.00 0.00 3.21
2231 2283 8.721478 CACACTCTAATACAACTTTGCTTATGT 58.279 33.333 0.00 0.00 0.00 2.29
2232 2284 8.721478 ACACACTCTAATACAACTTTGCTTATG 58.279 33.333 0.00 0.00 0.00 1.90
2233 2285 8.721478 CACACACTCTAATACAACTTTGCTTAT 58.279 33.333 0.00 0.00 0.00 1.73
2234 2286 7.929245 TCACACACTCTAATACAACTTTGCTTA 59.071 33.333 0.00 0.00 0.00 3.09
2235 2287 6.765989 TCACACACTCTAATACAACTTTGCTT 59.234 34.615 0.00 0.00 0.00 3.91
2236 2288 6.288294 TCACACACTCTAATACAACTTTGCT 58.712 36.000 0.00 0.00 0.00 3.91
2237 2289 6.539649 TCACACACTCTAATACAACTTTGC 57.460 37.500 0.00 0.00 0.00 3.68
2238 2290 8.087982 ACATCACACACTCTAATACAACTTTG 57.912 34.615 0.00 0.00 0.00 2.77
2239 2291 8.677148 AACATCACACACTCTAATACAACTTT 57.323 30.769 0.00 0.00 0.00 2.66
2240 2292 9.204570 GTAACATCACACACTCTAATACAACTT 57.795 33.333 0.00 0.00 0.00 2.66
2241 2293 8.585881 AGTAACATCACACACTCTAATACAACT 58.414 33.333 0.00 0.00 0.00 3.16
2242 2294 8.758633 AGTAACATCACACACTCTAATACAAC 57.241 34.615 0.00 0.00 0.00 3.32
2243 2295 8.033038 GGAGTAACATCACACACTCTAATACAA 58.967 37.037 0.00 0.00 37.99 2.41
2244 2296 7.396339 AGGAGTAACATCACACACTCTAATACA 59.604 37.037 0.00 0.00 37.99 2.29
2245 2297 7.773149 AGGAGTAACATCACACACTCTAATAC 58.227 38.462 0.00 0.00 37.99 1.89
2246 2298 7.956328 AGGAGTAACATCACACACTCTAATA 57.044 36.000 0.00 0.00 37.99 0.98
2247 2299 6.859112 AGGAGTAACATCACACACTCTAAT 57.141 37.500 0.00 0.00 37.99 1.73
2248 2300 7.450634 ACTTAGGAGTAACATCACACACTCTAA 59.549 37.037 0.00 0.00 37.99 2.10
2249 2301 6.946583 ACTTAGGAGTAACATCACACACTCTA 59.053 38.462 0.00 0.00 37.99 2.43
2250 2302 5.775701 ACTTAGGAGTAACATCACACACTCT 59.224 40.000 0.00 0.00 37.99 3.24
2251 2303 6.026947 ACTTAGGAGTAACATCACACACTC 57.973 41.667 0.00 0.00 37.32 3.51
2252 2304 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
2253 2305 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
2254 2306 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
2255 2307 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
2256 2308 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
2257 2309 5.395435 GGGAGGAACTTAGGAGTAACATCAC 60.395 48.000 0.00 0.00 41.55 3.06
2258 2310 4.715297 GGGAGGAACTTAGGAGTAACATCA 59.285 45.833 0.00 0.00 41.55 3.07
2259 2311 4.101274 GGGGAGGAACTTAGGAGTAACATC 59.899 50.000 0.00 0.00 41.55 3.06
2260 2312 4.038633 GGGGAGGAACTTAGGAGTAACAT 58.961 47.826 0.00 0.00 41.55 2.71
2261 2313 3.181404 TGGGGAGGAACTTAGGAGTAACA 60.181 47.826 0.00 0.00 41.55 2.41
2262 2314 3.197333 GTGGGGAGGAACTTAGGAGTAAC 59.803 52.174 0.00 0.00 41.55 2.50
2263 2315 3.078612 AGTGGGGAGGAACTTAGGAGTAA 59.921 47.826 0.00 0.00 41.55 2.24
2264 2316 2.658489 AGTGGGGAGGAACTTAGGAGTA 59.342 50.000 0.00 0.00 41.55 2.59
2265 2317 1.437547 AGTGGGGAGGAACTTAGGAGT 59.562 52.381 0.00 0.00 41.55 3.85
2266 2318 1.834263 CAGTGGGGAGGAACTTAGGAG 59.166 57.143 0.00 0.00 41.55 3.69
2267 2319 1.151413 ACAGTGGGGAGGAACTTAGGA 59.849 52.381 0.00 0.00 41.55 2.94
2268 2320 1.279271 CACAGTGGGGAGGAACTTAGG 59.721 57.143 0.00 0.00 41.55 2.69
2269 2321 2.028020 GTCACAGTGGGGAGGAACTTAG 60.028 54.545 0.00 0.00 41.55 2.18
2270 2322 1.975680 GTCACAGTGGGGAGGAACTTA 59.024 52.381 0.00 0.00 41.55 2.24
2271 2323 0.765510 GTCACAGTGGGGAGGAACTT 59.234 55.000 0.00 0.00 41.55 2.66
2273 2325 1.375326 GGTCACAGTGGGGAGGAAC 59.625 63.158 0.00 0.00 0.00 3.62
2274 2326 1.074090 TGGTCACAGTGGGGAGGAA 60.074 57.895 0.00 0.00 0.00 3.36
2275 2327 1.536418 CTGGTCACAGTGGGGAGGA 60.536 63.158 0.00 0.00 39.92 3.71
2276 2328 3.072476 CTGGTCACAGTGGGGAGG 58.928 66.667 0.00 0.00 39.92 4.30
2277 2329 2.348998 GCTGGTCACAGTGGGGAG 59.651 66.667 0.00 0.00 46.62 4.30
2278 2330 2.395180 TAGGCTGGTCACAGTGGGGA 62.395 60.000 0.00 0.00 46.62 4.81
2279 2331 1.488705 TTAGGCTGGTCACAGTGGGG 61.489 60.000 0.00 0.00 46.62 4.96
2280 2332 0.036010 CTTAGGCTGGTCACAGTGGG 60.036 60.000 0.00 0.00 46.62 4.61
2281 2333 0.976641 TCTTAGGCTGGTCACAGTGG 59.023 55.000 0.00 0.00 46.62 4.00
2282 2334 2.839486 TTCTTAGGCTGGTCACAGTG 57.161 50.000 0.00 0.00 46.62 3.66
2283 2335 3.857157 TTTTCTTAGGCTGGTCACAGT 57.143 42.857 0.00 0.00 46.62 3.55
2285 2337 4.431416 TCTTTTTCTTAGGCTGGTCACA 57.569 40.909 0.00 0.00 0.00 3.58
2286 2338 4.822350 AGTTCTTTTTCTTAGGCTGGTCAC 59.178 41.667 0.00 0.00 0.00 3.67
2287 2339 5.048846 AGTTCTTTTTCTTAGGCTGGTCA 57.951 39.130 0.00 0.00 0.00 4.02
2288 2340 5.122554 GCTAGTTCTTTTTCTTAGGCTGGTC 59.877 44.000 0.00 0.00 0.00 4.02
2289 2341 5.004448 GCTAGTTCTTTTTCTTAGGCTGGT 58.996 41.667 0.00 0.00 0.00 4.00
2290 2342 4.396478 GGCTAGTTCTTTTTCTTAGGCTGG 59.604 45.833 0.00 0.00 0.00 4.85
2291 2343 5.003804 TGGCTAGTTCTTTTTCTTAGGCTG 58.996 41.667 0.00 0.00 0.00 4.85
2292 2344 5.013183 TCTGGCTAGTTCTTTTTCTTAGGCT 59.987 40.000 0.00 0.00 0.00 4.58
2293 2345 5.246307 TCTGGCTAGTTCTTTTTCTTAGGC 58.754 41.667 0.00 0.00 0.00 3.93
2294 2346 6.937465 ACTTCTGGCTAGTTCTTTTTCTTAGG 59.063 38.462 0.00 0.00 0.00 2.69
2295 2347 7.971183 ACTTCTGGCTAGTTCTTTTTCTTAG 57.029 36.000 0.00 0.00 0.00 2.18
2296 2348 9.269453 GTAACTTCTGGCTAGTTCTTTTTCTTA 57.731 33.333 0.00 0.00 37.12 2.10
2297 2349 7.993758 AGTAACTTCTGGCTAGTTCTTTTTCTT 59.006 33.333 0.00 0.00 37.12 2.52
2298 2350 7.510407 AGTAACTTCTGGCTAGTTCTTTTTCT 58.490 34.615 0.00 0.00 37.12 2.52
2299 2351 7.095144 GGAGTAACTTCTGGCTAGTTCTTTTTC 60.095 40.741 0.00 0.00 37.12 2.29
2305 2357 3.193056 ACGGAGTAACTTCTGGCTAGTTC 59.807 47.826 0.00 0.00 41.94 3.01
2307 2359 2.805194 ACGGAGTAACTTCTGGCTAGT 58.195 47.619 0.00 0.00 41.94 2.57
2323 2375 0.461163 CGACACCCAATGCATACGGA 60.461 55.000 16.80 0.00 0.00 4.69
2350 2442 1.444212 CGTTTTTGCATGCGGGGAG 60.444 57.895 14.09 0.00 0.00 4.30
2373 2465 3.497031 GCCGTACCGAGCCTTTGC 61.497 66.667 0.00 0.00 37.95 3.68
2388 2480 0.755327 ATTTCCGGCCTAACCATGCC 60.755 55.000 0.00 0.00 44.41 4.40
2411 2503 4.437390 CCAATTAGTGCTTGTCCATCGTTC 60.437 45.833 0.00 0.00 0.00 3.95
2486 2579 8.590719 TTGAACGTGTTATGAGTATTTGTGTA 57.409 30.769 0.00 0.00 0.00 2.90
2497 2590 8.148807 TGAGAATTTTCTTGAACGTGTTATGA 57.851 30.769 0.00 0.00 37.73 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.