Multiple sequence alignment - TraesCS4A01G477400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G477400 chr4A 100.000 3128 0 0 1 3128 735318062 735321189 0.000000e+00 5777
1 TraesCS4A01G477400 chr4A 88.292 2605 252 25 1 2563 735560945 735558352 0.000000e+00 3072
2 TraesCS4A01G477400 chr4A 86.774 2616 275 43 3 2572 735690809 735693399 0.000000e+00 2848
3 TraesCS4A01G477400 chr4A 85.255 2611 329 30 1 2580 736758067 736760652 0.000000e+00 2638
4 TraesCS4A01G477400 chr4A 84.401 2545 356 28 1 2523 736411547 736409022 0.000000e+00 2462
5 TraesCS4A01G477400 chr4A 84.495 2296 329 21 1 2282 736468941 736466659 0.000000e+00 2242
6 TraesCS4A01G477400 chr4A 84.938 2244 303 26 1 2227 734386933 734389158 0.000000e+00 2239
7 TraesCS4A01G477400 chr4A 83.471 2184 341 18 1 2172 735748881 735751056 0.000000e+00 2015
8 TraesCS4A01G477400 chr4A 84.690 1032 142 11 1 1018 734998501 734999530 0.000000e+00 1016
9 TraesCS4A01G477400 chr4A 87.660 470 57 1 1 470 734481897 734482365 2.120000e-151 545
10 TraesCS4A01G477400 chr4A 86.792 371 28 10 2294 2661 734484734 734485086 8.130000e-106 394
11 TraesCS4A01G477400 chr4A 84.615 221 21 4 2874 3082 734485112 734485331 1.140000e-49 207
12 TraesCS4A01G477400 chr4A 84.404 218 19 3 2877 3081 735558102 735557887 1.900000e-47 200
13 TraesCS4A01G477400 chr4A 79.104 268 38 9 2588 2848 736673246 736673502 5.370000e-38 169
14 TraesCS4A01G477400 chr4A 74.876 402 71 21 2413 2806 736888184 736888563 4.180000e-34 156
15 TraesCS4A01G477400 chr7A 85.546 2290 305 22 6 2282 6926894 6924618 0.000000e+00 2372
16 TraesCS4A01G477400 chr7D 84.828 2241 309 23 1 2217 5636332 5634099 0.000000e+00 2226
17 TraesCS4A01G477400 chr7D 84.309 2186 317 20 1 2172 5647636 5645463 0.000000e+00 2113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G477400 chr4A 735318062 735321189 3127 False 5777 5777 100.000000 1 3128 1 chr4A.!!$F3 3127
1 TraesCS4A01G477400 chr4A 735690809 735693399 2590 False 2848 2848 86.774000 3 2572 1 chr4A.!!$F4 2569
2 TraesCS4A01G477400 chr4A 736758067 736760652 2585 False 2638 2638 85.255000 1 2580 1 chr4A.!!$F7 2579
3 TraesCS4A01G477400 chr4A 736409022 736411547 2525 True 2462 2462 84.401000 1 2523 1 chr4A.!!$R1 2522
4 TraesCS4A01G477400 chr4A 736466659 736468941 2282 True 2242 2242 84.495000 1 2282 1 chr4A.!!$R2 2281
5 TraesCS4A01G477400 chr4A 734386933 734389158 2225 False 2239 2239 84.938000 1 2227 1 chr4A.!!$F1 2226
6 TraesCS4A01G477400 chr4A 735748881 735751056 2175 False 2015 2015 83.471000 1 2172 1 chr4A.!!$F5 2171
7 TraesCS4A01G477400 chr4A 735557887 735560945 3058 True 1636 3072 86.348000 1 3081 2 chr4A.!!$R3 3080
8 TraesCS4A01G477400 chr4A 734998501 734999530 1029 False 1016 1016 84.690000 1 1018 1 chr4A.!!$F2 1017
9 TraesCS4A01G477400 chr4A 734481897 734485331 3434 False 382 545 86.355667 1 3082 3 chr4A.!!$F9 3081
10 TraesCS4A01G477400 chr7A 6924618 6926894 2276 True 2372 2372 85.546000 6 2282 1 chr7A.!!$R1 2276
11 TraesCS4A01G477400 chr7D 5634099 5636332 2233 True 2226 2226 84.828000 1 2217 1 chr7D.!!$R1 2216
12 TraesCS4A01G477400 chr7D 5645463 5647636 2173 True 2113 2113 84.309000 1 2172 1 chr7D.!!$R2 2171

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
596 1252 0.25589 ATGCCACCGCCTCAACTTAT 59.744 50.0 0.0 0.0 0.0 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2366 3054 0.110486 AAGCAGGGGATCAACAACGT 59.89 50.0 0.0 0.0 0.0 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
384 409 6.521151 AAGAAAAAGGGATATGAGTTGCAG 57.479 37.500 0.00 0.00 0.00 4.41
561 1217 6.480763 TGCAGAGGATAGTTTACATTTGGAA 58.519 36.000 0.00 0.00 0.00 3.53
595 1251 0.392461 GATGCCACCGCCTCAACTTA 60.392 55.000 0.00 0.00 30.61 2.24
596 1252 0.255890 ATGCCACCGCCTCAACTTAT 59.744 50.000 0.00 0.00 0.00 1.73
610 1266 5.067805 CCTCAACTTATGGGCCTTACAATTC 59.932 44.000 4.53 0.00 0.00 2.17
645 1301 6.916360 TCTTCAAAATATCCAAGCTGGTTT 57.084 33.333 0.00 0.00 39.03 3.27
717 1373 2.325082 CGCGTTGCAAAGCCTACCT 61.325 57.895 27.79 0.00 0.00 3.08
728 1384 4.589908 CAAAGCCTACCTTCCAATACTGT 58.410 43.478 0.00 0.00 31.99 3.55
735 1391 5.414765 CCTACCTTCCAATACTGTGGTTTTC 59.585 44.000 0.00 0.00 39.88 2.29
751 1407 3.193479 GGTTTTCCGGAATTGCTCTTCAT 59.807 43.478 19.62 0.00 0.00 2.57
753 1409 5.105917 GGTTTTCCGGAATTGCTCTTCATTA 60.106 40.000 19.62 0.00 0.00 1.90
755 1411 3.808728 TCCGGAATTGCTCTTCATTAGG 58.191 45.455 0.00 0.00 0.00 2.69
757 1413 2.945008 CGGAATTGCTCTTCATTAGGCA 59.055 45.455 0.00 0.00 0.00 4.75
780 1436 7.600065 GCATCATCAATATGCTAAACCTGAAT 58.400 34.615 0.00 0.00 45.05 2.57
811 1467 4.553330 TGTCTTCCACTAGGCCTTAAAG 57.447 45.455 12.58 4.64 33.74 1.85
933 1589 4.156556 GCATCACAGCTTGGTTTAATCTGA 59.843 41.667 0.00 0.00 36.32 3.27
1023 1679 9.273016 CTGATGATATTGATGCATGCTGATATA 57.727 33.333 20.33 11.62 0.00 0.86
1109 1765 5.768662 GGGATATCATCAAGGCATGGATATG 59.231 44.000 4.83 0.00 37.36 1.78
1128 1784 0.527385 GCTGTCACGAGCAGAGGATC 60.527 60.000 8.07 0.00 38.95 3.36
1191 1847 3.499918 CACCATCAGGACTTTGTGAACTC 59.500 47.826 0.00 0.00 38.69 3.01
1207 1863 5.538053 TGTGAACTCTCTCTCTCTTCATGTT 59.462 40.000 0.00 0.00 0.00 2.71
1213 1869 8.133024 ACTCTCTCTCTCTTCATGTTGTATTT 57.867 34.615 0.00 0.00 0.00 1.40
1244 1900 3.305608 GCTTTAGCAGTTTGCCTTGATGT 60.306 43.478 0.00 0.00 46.52 3.06
1249 1905 2.233271 CAGTTTGCCTTGATGTCCTGT 58.767 47.619 0.00 0.00 0.00 4.00
1296 1952 7.559590 AGATGACATTATGACTTTAACTGCC 57.440 36.000 0.00 0.00 0.00 4.85
1352 2008 7.029563 ACAAAACTTGACTTCTTGTTCATCAC 58.970 34.615 0.00 0.00 0.00 3.06
1370 2026 2.016318 CACAAGTTGCTGGTGTCTCAA 58.984 47.619 1.81 0.00 31.25 3.02
1389 2045 3.583966 TCAAGTCATTAGGGGGTTTACGT 59.416 43.478 0.00 0.00 0.00 3.57
1395 2051 2.187896 TAGGGGGTTTACGTGCTGCC 62.188 60.000 0.00 0.00 0.00 4.85
1483 2139 5.951148 TGTTTGCCATTATCCATTGAGAAGA 59.049 36.000 0.00 0.00 0.00 2.87
1510 2166 8.046708 TCTGTATATTTAAGTGTGTGCTTGGAT 58.953 33.333 0.00 0.00 0.00 3.41
1524 2180 2.617774 GCTTGGATCTGAATTCCTCTGC 59.382 50.000 2.27 0.00 34.17 4.26
1537 2193 3.535629 CTCTGCACCGAGTGGCCAA 62.536 63.158 7.24 0.00 39.70 4.52
1554 2210 5.066505 GTGGCCAAAGATGAACGATATTCTT 59.933 40.000 7.24 0.00 0.00 2.52
1704 2360 5.466058 TGCACATTTGATTGATGTTCCAAAC 59.534 36.000 0.00 0.00 35.64 2.93
1810 2466 4.585879 GGCAGAAGGTATTACAGTTCCAA 58.414 43.478 0.00 0.00 0.00 3.53
1938 2594 3.511146 CCCTGCCAACAAATATGAAGTGT 59.489 43.478 0.00 0.00 0.00 3.55
1981 2637 1.134401 ACATCTATGACTGCCCCAACG 60.134 52.381 0.00 0.00 0.00 4.10
1998 2654 5.424757 CCCAACGTATCATCTTTACCAGAA 58.575 41.667 0.00 0.00 34.16 3.02
2038 2697 4.599047 CACATATGTGTTTGGGGTTGTT 57.401 40.909 24.91 0.00 40.96 2.83
2039 2698 4.555262 CACATATGTGTTTGGGGTTGTTC 58.445 43.478 24.91 0.00 40.96 3.18
2092 2751 1.703411 TGGAGAAAGTTGGCCAAAGG 58.297 50.000 22.47 0.00 0.00 3.11
2124 2787 4.028131 TCCGCTGGAAGGAATTTAGAGTA 58.972 43.478 0.00 0.00 34.33 2.59
2188 2852 0.041535 TCCCATTGGCCATCTTTGCT 59.958 50.000 6.09 0.00 0.00 3.91
2189 2853 0.906775 CCCATTGGCCATCTTTGCTT 59.093 50.000 6.09 0.00 0.00 3.91
2197 2863 2.094854 GGCCATCTTTGCTTTGTCAGAG 60.095 50.000 0.00 0.00 0.00 3.35
2363 3051 2.945008 CCAAACTGTCTTCTGCTTCACA 59.055 45.455 0.00 0.00 0.00 3.58
2378 3083 2.163818 TCACAGGACGTTGTTGATCC 57.836 50.000 0.00 0.00 0.00 3.36
2402 3107 1.335324 GCTTTGCTGATTGCTTCACGT 60.335 47.619 0.00 0.00 43.37 4.49
2433 3158 1.001746 CTCTGGTGCACTGTCACTGAT 59.998 52.381 17.98 0.00 37.16 2.90
2572 3304 1.340114 CCTGTTTTGCTACCCTCTCCC 60.340 57.143 0.00 0.00 0.00 4.30
2574 3306 0.611714 GTTTTGCTACCCTCTCCCGA 59.388 55.000 0.00 0.00 0.00 5.14
2587 3319 2.436646 CCCGAAATCTGCCGCACT 60.437 61.111 0.00 0.00 0.00 4.40
2591 3323 1.330306 CGAAATCTGCCGCACTTTTG 58.670 50.000 0.00 0.00 0.00 2.44
2597 3329 1.680735 TCTGCCGCACTTTTGATTTGT 59.319 42.857 0.00 0.00 0.00 2.83
2598 3330 2.881513 TCTGCCGCACTTTTGATTTGTA 59.118 40.909 0.00 0.00 0.00 2.41
2628 3360 7.201565 GGACTGTAATCTTTATCTCTTGTGTGC 60.202 40.741 0.00 0.00 0.00 4.57
2635 3367 7.233389 TCTTTATCTCTTGTGTGCTCTTACT 57.767 36.000 0.00 0.00 0.00 2.24
2644 3379 4.314961 TGTGTGCTCTTACTTACCATGTG 58.685 43.478 0.00 0.00 0.00 3.21
2648 3383 5.479027 TGTGCTCTTACTTACCATGTGACTA 59.521 40.000 0.00 0.00 0.00 2.59
2661 3396 5.174395 CCATGTGACTAGAGGTCTCTTTTG 58.826 45.833 5.77 0.83 44.74 2.44
2669 3404 7.067496 ACTAGAGGTCTCTTTTGTCATTCAA 57.933 36.000 5.77 0.00 40.93 2.69
2670 3405 7.684529 ACTAGAGGTCTCTTTTGTCATTCAAT 58.315 34.615 5.77 0.00 40.93 2.57
2672 3407 6.777782 AGAGGTCTCTTTTGTCATTCAATCT 58.222 36.000 0.00 0.00 36.31 2.40
2673 3408 7.230027 AGAGGTCTCTTTTGTCATTCAATCTT 58.770 34.615 0.00 0.00 36.31 2.40
2677 3412 8.233190 GGTCTCTTTTGTCATTCAATCTTGTAG 58.767 37.037 0.00 0.00 35.84 2.74
2682 3417 8.675705 TTTTGTCATTCAATCTTGTAGTGAGA 57.324 30.769 0.00 0.00 32.96 3.27
2686 3421 9.538508 TGTCATTCAATCTTGTAGTGAGATATG 57.461 33.333 0.00 0.00 32.96 1.78
2699 3434 9.696917 TGTAGTGAGATATGTAATGTATTGCAG 57.303 33.333 2.11 0.00 35.90 4.41
2700 3435 9.698309 GTAGTGAGATATGTAATGTATTGCAGT 57.302 33.333 2.11 0.00 35.90 4.40
2711 3446 9.056005 TGTAATGTATTGCAGTATTTGAGATCC 57.944 33.333 0.00 0.00 29.97 3.36
2713 3448 8.701908 AATGTATTGCAGTATTTGAGATCCAT 57.298 30.769 0.00 0.00 0.00 3.41
2715 3450 8.523915 TGTATTGCAGTATTTGAGATCCATTT 57.476 30.769 0.00 0.00 0.00 2.32
2716 3451 8.623903 TGTATTGCAGTATTTGAGATCCATTTC 58.376 33.333 0.00 0.00 0.00 2.17
2717 3452 6.455360 TTGCAGTATTTGAGATCCATTTCC 57.545 37.500 0.00 0.00 0.00 3.13
2718 3453 5.508567 TGCAGTATTTGAGATCCATTTCCA 58.491 37.500 0.00 0.00 0.00 3.53
2724 3459 9.347240 AGTATTTGAGATCCATTTCCATACTTG 57.653 33.333 0.00 0.00 0.00 3.16
2730 3465 8.152898 TGAGATCCATTTCCATACTTGATACAG 58.847 37.037 0.00 0.00 0.00 2.74
2747 3482 1.600076 AGTGTGCCTGCTGCTTCAG 60.600 57.895 0.00 0.00 42.00 3.02
2749 3484 1.598962 TGTGCCTGCTGCTTCAGAC 60.599 57.895 0.00 0.00 42.00 3.51
2750 3485 2.033141 TGCCTGCTGCTTCAGACC 59.967 61.111 0.00 0.34 42.00 3.85
2751 3486 2.033141 GCCTGCTGCTTCAGACCA 59.967 61.111 0.00 0.00 36.19 4.02
2752 3487 1.378250 GCCTGCTGCTTCAGACCAT 60.378 57.895 0.00 0.00 36.19 3.55
2753 3488 0.964358 GCCTGCTGCTTCAGACCATT 60.964 55.000 0.00 0.00 36.19 3.16
2754 3489 1.542492 CCTGCTGCTTCAGACCATTT 58.458 50.000 0.00 0.00 36.19 2.32
2755 3490 1.201647 CCTGCTGCTTCAGACCATTTG 59.798 52.381 0.00 0.00 36.19 2.32
2756 3491 1.884579 CTGCTGCTTCAGACCATTTGT 59.115 47.619 0.00 0.00 36.19 2.83
2757 3492 2.295349 CTGCTGCTTCAGACCATTTGTT 59.705 45.455 0.00 0.00 36.19 2.83
2758 3493 2.034939 TGCTGCTTCAGACCATTTGTTG 59.965 45.455 0.00 0.00 32.44 3.33
2759 3494 2.294233 GCTGCTTCAGACCATTTGTTGA 59.706 45.455 0.00 0.00 32.44 3.18
2760 3495 3.243501 GCTGCTTCAGACCATTTGTTGAA 60.244 43.478 0.00 0.00 32.44 2.69
2762 3497 4.873817 TGCTTCAGACCATTTGTTGAATG 58.126 39.130 0.00 0.00 43.89 2.67
2763 3498 4.583907 TGCTTCAGACCATTTGTTGAATGA 59.416 37.500 0.56 0.00 46.59 2.57
2764 3499 5.244402 TGCTTCAGACCATTTGTTGAATGAT 59.756 36.000 0.56 0.00 46.59 2.45
2765 3500 5.575606 GCTTCAGACCATTTGTTGAATGATG 59.424 40.000 0.56 0.00 46.59 3.07
2766 3501 5.648178 TCAGACCATTTGTTGAATGATGG 57.352 39.130 0.56 0.00 46.59 3.51
2767 3502 5.323581 TCAGACCATTTGTTGAATGATGGA 58.676 37.500 8.12 0.00 46.59 3.41
2768 3503 5.774184 TCAGACCATTTGTTGAATGATGGAA 59.226 36.000 8.12 0.00 46.59 3.53
2769 3504 5.865552 CAGACCATTTGTTGAATGATGGAAC 59.134 40.000 8.12 2.69 46.59 3.62
2770 3505 5.047092 AGACCATTTGTTGAATGATGGAACC 60.047 40.000 8.12 0.00 46.59 3.62
2771 3506 4.840115 ACCATTTGTTGAATGATGGAACCT 59.160 37.500 8.12 0.00 46.59 3.50
2772 3507 5.307716 ACCATTTGTTGAATGATGGAACCTT 59.692 36.000 8.12 0.00 46.59 3.50
2773 3508 5.870978 CCATTTGTTGAATGATGGAACCTTC 59.129 40.000 0.56 0.00 46.59 3.46
2774 3509 4.764679 TTGTTGAATGATGGAACCTTCG 57.235 40.909 0.00 0.00 0.00 3.79
2775 3510 3.750371 TGTTGAATGATGGAACCTTCGT 58.250 40.909 0.00 0.00 0.00 3.85
2776 3511 4.141287 TGTTGAATGATGGAACCTTCGTT 58.859 39.130 12.04 12.04 33.76 3.85
2777 3512 4.023279 TGTTGAATGATGGAACCTTCGTTG 60.023 41.667 15.57 0.00 32.04 4.10
2784 3519 2.600790 TGGAACCTTCGTTGGTCTAGA 58.399 47.619 2.90 0.00 39.83 2.43
2789 3524 2.289506 ACCTTCGTTGGTCTAGAAAGCC 60.290 50.000 0.00 0.00 34.86 4.35
2806 3541 1.584380 GCCTGCTGCTTCAGACCTTG 61.584 60.000 0.00 0.00 36.19 3.61
2820 3555 2.599597 CTTGGGGGCATGCTAGCT 59.400 61.111 18.92 0.00 34.17 3.32
2822 3557 4.511246 TGGGGGCATGCTAGCTGC 62.511 66.667 23.03 23.03 43.25 5.25
2841 3576 2.816087 TGCTCTTTCTGGTTGCTCATTC 59.184 45.455 0.00 0.00 0.00 2.67
2845 3580 2.205022 TTCTGGTTGCTCATTCCCTG 57.795 50.000 0.00 0.00 0.00 4.45
2846 3581 0.322816 TCTGGTTGCTCATTCCCTGC 60.323 55.000 0.00 0.00 0.00 4.85
2847 3582 0.323178 CTGGTTGCTCATTCCCTGCT 60.323 55.000 0.00 0.00 0.00 4.24
2848 3583 0.112995 TGGTTGCTCATTCCCTGCTT 59.887 50.000 0.00 0.00 0.00 3.91
2849 3584 1.260544 GGTTGCTCATTCCCTGCTTT 58.739 50.000 0.00 0.00 0.00 3.51
2850 3585 1.067354 GGTTGCTCATTCCCTGCTTTG 60.067 52.381 0.00 0.00 0.00 2.77
2851 3586 1.067354 GTTGCTCATTCCCTGCTTTGG 60.067 52.381 0.00 0.00 0.00 3.28
2852 3587 0.112995 TGCTCATTCCCTGCTTTGGT 59.887 50.000 0.00 0.00 0.00 3.67
2853 3588 1.260544 GCTCATTCCCTGCTTTGGTT 58.739 50.000 0.00 0.00 0.00 3.67
2854 3589 1.620323 GCTCATTCCCTGCTTTGGTTT 59.380 47.619 0.00 0.00 0.00 3.27
2855 3590 2.825532 GCTCATTCCCTGCTTTGGTTTA 59.174 45.455 0.00 0.00 0.00 2.01
2856 3591 3.448660 GCTCATTCCCTGCTTTGGTTTAT 59.551 43.478 0.00 0.00 0.00 1.40
2857 3592 4.081476 GCTCATTCCCTGCTTTGGTTTATT 60.081 41.667 0.00 0.00 0.00 1.40
2858 3593 5.569428 GCTCATTCCCTGCTTTGGTTTATTT 60.569 40.000 0.00 0.00 0.00 1.40
2859 3594 6.432403 TCATTCCCTGCTTTGGTTTATTTT 57.568 33.333 0.00 0.00 0.00 1.82
2860 3595 6.463360 TCATTCCCTGCTTTGGTTTATTTTC 58.537 36.000 0.00 0.00 0.00 2.29
2861 3596 5.878406 TTCCCTGCTTTGGTTTATTTTCA 57.122 34.783 0.00 0.00 0.00 2.69
2862 3597 6.432403 TTCCCTGCTTTGGTTTATTTTCAT 57.568 33.333 0.00 0.00 0.00 2.57
2863 3598 7.546250 TTCCCTGCTTTGGTTTATTTTCATA 57.454 32.000 0.00 0.00 0.00 2.15
2864 3599 7.169158 TCCCTGCTTTGGTTTATTTTCATAG 57.831 36.000 0.00 0.00 0.00 2.23
2865 3600 5.812127 CCCTGCTTTGGTTTATTTTCATAGC 59.188 40.000 0.00 0.00 36.49 2.97
2866 3601 6.351286 CCCTGCTTTGGTTTATTTTCATAGCT 60.351 38.462 0.00 0.00 36.75 3.32
2867 3602 7.147915 CCCTGCTTTGGTTTATTTTCATAGCTA 60.148 37.037 0.00 0.00 36.75 3.32
2868 3603 7.917505 CCTGCTTTGGTTTATTTTCATAGCTAG 59.082 37.037 0.00 0.00 36.75 3.42
2869 3604 8.574251 TGCTTTGGTTTATTTTCATAGCTAGA 57.426 30.769 0.00 0.00 36.75 2.43
2870 3605 8.677300 TGCTTTGGTTTATTTTCATAGCTAGAG 58.323 33.333 0.00 0.00 36.75 2.43
2871 3606 8.893727 GCTTTGGTTTATTTTCATAGCTAGAGA 58.106 33.333 0.00 0.00 34.33 3.10
2884 3619 0.460987 CTAGAGAGCCGGCTGTTTGG 60.461 60.000 38.41 24.24 0.00 3.28
2899 3634 3.355378 TGTTTGGGATCTACAGGCATTG 58.645 45.455 0.00 0.00 0.00 2.82
2909 3646 4.758688 TCTACAGGCATTGTCACTATGTG 58.241 43.478 1.06 0.00 41.29 3.21
2910 3647 3.423539 ACAGGCATTGTCACTATGTGT 57.576 42.857 1.06 0.00 33.87 3.72
2914 3651 4.330894 CAGGCATTGTCACTATGTGTACAG 59.669 45.833 0.00 0.00 34.79 2.74
2919 3656 7.279981 GGCATTGTCACTATGTGTACAGATTTA 59.720 37.037 11.18 0.00 34.79 1.40
2966 3709 9.968870 CATTTAACTAGTATCTTCTGGAGGTAC 57.031 37.037 0.00 0.00 41.46 3.34
2984 3727 4.081087 AGGTACGTCTGAATAAATGTGCCT 60.081 41.667 0.00 0.00 41.10 4.75
2985 3728 4.034048 GGTACGTCTGAATAAATGTGCCTG 59.966 45.833 0.00 0.00 35.15 4.85
3031 3774 9.166126 GTTGTAATTTAATTATCGTAGCTTGGC 57.834 33.333 0.00 0.00 0.00 4.52
3034 3777 9.382244 GTAATTTAATTATCGTAGCTTGGCTTG 57.618 33.333 0.00 0.00 40.44 4.01
3065 3815 8.025270 TCTATATATGAGGACGGTTTGGAAAA 57.975 34.615 0.00 0.00 0.00 2.29
3068 3818 0.596577 GAGGACGGTTTGGAAAAGCC 59.403 55.000 0.00 0.00 37.10 4.35
3082 3832 4.764823 TGGAAAAGCCTGTACAGTTTATGG 59.235 41.667 21.18 7.15 37.63 2.74
3083 3833 4.380550 GGAAAAGCCTGTACAGTTTATGGC 60.381 45.833 21.18 16.58 40.54 4.40
3084 3834 3.433306 AAGCCTGTACAGTTTATGGCA 57.567 42.857 21.18 0.00 42.46 4.92
3085 3835 2.711542 AGCCTGTACAGTTTATGGCAC 58.288 47.619 21.18 0.12 42.46 5.01
3086 3836 2.305927 AGCCTGTACAGTTTATGGCACT 59.694 45.455 21.18 0.21 42.46 4.40
3087 3837 3.517901 AGCCTGTACAGTTTATGGCACTA 59.482 43.478 21.18 0.00 42.46 2.74
3088 3838 4.019681 AGCCTGTACAGTTTATGGCACTAA 60.020 41.667 21.18 0.00 42.46 2.24
3089 3839 4.332819 GCCTGTACAGTTTATGGCACTAAG 59.667 45.833 21.18 2.24 40.04 2.18
3090 3840 5.488341 CCTGTACAGTTTATGGCACTAAGT 58.512 41.667 21.18 0.00 0.00 2.24
3091 3841 5.938125 CCTGTACAGTTTATGGCACTAAGTT 59.062 40.000 21.18 0.00 0.00 2.66
3092 3842 7.101054 CCTGTACAGTTTATGGCACTAAGTTA 58.899 38.462 21.18 0.00 0.00 2.24
3093 3843 7.604927 CCTGTACAGTTTATGGCACTAAGTTAA 59.395 37.037 21.18 0.00 0.00 2.01
3094 3844 9.162764 CTGTACAGTTTATGGCACTAAGTTAAT 57.837 33.333 15.06 0.00 0.00 1.40
3095 3845 9.509956 TGTACAGTTTATGGCACTAAGTTAATT 57.490 29.630 0.00 0.00 0.00 1.40
3104 3854 7.038154 TGGCACTAAGTTAATTTATCATGGC 57.962 36.000 12.34 12.34 0.00 4.40
3105 3855 6.833416 TGGCACTAAGTTAATTTATCATGGCT 59.167 34.615 16.58 0.00 0.00 4.75
3106 3856 7.141363 GGCACTAAGTTAATTTATCATGGCTG 58.859 38.462 12.13 0.00 0.00 4.85
3107 3857 7.013274 GGCACTAAGTTAATTTATCATGGCTGA 59.987 37.037 12.13 0.00 35.41 4.26
3108 3858 8.571336 GCACTAAGTTAATTTATCATGGCTGAT 58.429 33.333 0.00 5.11 44.39 2.90
3120 3870 5.526506 TCATGGCTGATCTATCATATCCG 57.473 43.478 0.00 0.00 36.02 4.18
3121 3871 4.958581 TCATGGCTGATCTATCATATCCGT 59.041 41.667 0.00 0.00 36.02 4.69
3122 3872 4.725790 TGGCTGATCTATCATATCCGTG 57.274 45.455 0.00 0.00 36.02 4.94
3123 3873 4.089361 TGGCTGATCTATCATATCCGTGT 58.911 43.478 0.00 0.00 36.02 4.49
3124 3874 4.528206 TGGCTGATCTATCATATCCGTGTT 59.472 41.667 0.00 0.00 36.02 3.32
3125 3875 4.867047 GGCTGATCTATCATATCCGTGTTG 59.133 45.833 0.00 0.00 36.02 3.33
3126 3876 4.867047 GCTGATCTATCATATCCGTGTTGG 59.133 45.833 0.00 0.00 36.02 3.77
3127 3877 5.567623 GCTGATCTATCATATCCGTGTTGGT 60.568 44.000 0.00 0.00 36.09 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
384 409 1.364626 CGTTCATGTCCCTCAGCTGC 61.365 60.000 9.47 0.00 0.00 5.25
414 439 8.506168 TCTCAAGATTTGTGACACTTAAACTT 57.494 30.769 7.20 8.49 0.00 2.66
595 1251 1.005450 ACCGTGAATTGTAAGGCCCAT 59.995 47.619 0.00 0.00 0.00 4.00
596 1252 0.402504 ACCGTGAATTGTAAGGCCCA 59.597 50.000 0.00 0.00 0.00 5.36
610 1266 8.240682 TGGATATTTTGAAGATTTGTAACCGTG 58.759 33.333 0.00 0.00 0.00 4.94
717 1373 3.150767 CCGGAAAACCACAGTATTGGAA 58.849 45.455 0.00 0.00 39.24 3.53
728 1384 2.286365 AGAGCAATTCCGGAAAACCA 57.714 45.000 23.08 0.00 0.00 3.67
735 1391 2.291741 GCCTAATGAAGAGCAATTCCGG 59.708 50.000 0.00 0.00 0.00 5.14
757 1413 9.797642 TGTATTCAGGTTTAGCATATTGATGAT 57.202 29.630 0.00 0.00 34.73 2.45
770 1426 9.444600 GAAGACAAGGTAATGTATTCAGGTTTA 57.555 33.333 9.25 0.00 45.95 2.01
780 1436 5.105064 GCCTAGTGGAAGACAAGGTAATGTA 60.105 44.000 0.00 0.00 31.72 2.29
811 1467 8.730680 CAGTGGGCAATTGGATATACTTAATAC 58.269 37.037 7.72 0.00 0.00 1.89
933 1589 3.411454 TCTGATCCTGAATCCACCTCT 57.589 47.619 0.00 0.00 33.01 3.69
1085 1741 3.726557 TCCATGCCTTGATGATATCCC 57.273 47.619 0.00 0.00 0.00 3.85
1109 1765 0.527385 GATCCTCTGCTCGTGACAGC 60.527 60.000 1.00 1.00 40.13 4.40
1128 1784 2.809665 GCTCCTTCCATACATGAGCCTG 60.810 54.545 0.00 0.00 41.95 4.85
1191 1847 8.249638 TCTGAAATACAACATGAAGAGAGAGAG 58.750 37.037 0.00 0.00 0.00 3.20
1207 1863 5.744171 TGCTAAAGCTCCATCTGAAATACA 58.256 37.500 3.26 0.00 42.66 2.29
1213 1869 3.988976 AACTGCTAAAGCTCCATCTGA 57.011 42.857 3.26 0.00 42.66 3.27
1244 1900 5.684704 ACAATCTTTTCAGTGAAGACAGGA 58.315 37.500 5.56 0.00 36.08 3.86
1249 1905 9.784531 ATCTAAGAACAATCTTTTCAGTGAAGA 57.215 29.630 5.56 1.07 43.43 2.87
1352 2008 2.289002 GACTTGAGACACCAGCAACTTG 59.711 50.000 0.00 0.00 0.00 3.16
1370 2026 2.355412 GCACGTAAACCCCCTAATGACT 60.355 50.000 0.00 0.00 0.00 3.41
1389 2045 0.035881 CTGAAAGAGAGGTGGCAGCA 59.964 55.000 20.04 0.00 34.07 4.41
1483 2139 8.046708 TCCAAGCACACACTTAAATATACAGAT 58.953 33.333 0.00 0.00 0.00 2.90
1510 2166 1.205655 CTCGGTGCAGAGGAATTCAGA 59.794 52.381 7.93 0.00 34.74 3.27
1524 2180 0.321564 TCATCTTTGGCCACTCGGTG 60.322 55.000 3.88 3.08 33.28 4.94
1581 2237 3.709653 AGGTGAGACTACCAACAGACAAA 59.290 43.478 0.00 0.00 43.37 2.83
1704 2360 0.456221 AGATACACTCGGCGTTGAGG 59.544 55.000 16.16 7.57 40.39 3.86
1791 2447 8.164070 AGAAATGTTGGAACTGTAATACCTTCT 58.836 33.333 0.00 0.00 0.00 2.85
1800 2456 6.672266 AGAGAGAGAAATGTTGGAACTGTA 57.328 37.500 0.00 0.00 0.00 2.74
1810 2466 7.281040 TGCATTTTTCAAGAGAGAGAAATGT 57.719 32.000 16.28 0.00 45.01 2.71
1938 2594 4.767409 TCGAGACTCTTCAGATTGGAGAAA 59.233 41.667 0.03 0.00 0.00 2.52
1981 2637 5.428253 TGGCAGTTCTGGTAAAGATGATAC 58.572 41.667 1.97 0.00 33.93 2.24
1998 2654 1.919600 GCTGAAGGGAGGATGGCAGT 61.920 60.000 0.00 0.00 0.00 4.40
2037 2696 2.289320 GCTCTCCTTCAACAGCTCAGAA 60.289 50.000 0.00 0.00 0.00 3.02
2038 2697 1.274728 GCTCTCCTTCAACAGCTCAGA 59.725 52.381 0.00 0.00 0.00 3.27
2039 2698 1.275856 AGCTCTCCTTCAACAGCTCAG 59.724 52.381 0.00 0.00 37.72 3.35
2092 2751 3.406361 CCAGCGGATATGCGCGAC 61.406 66.667 31.50 10.04 40.67 5.19
2124 2787 6.753913 TTTGTAGCTGGGAATCTAGATCAT 57.246 37.500 5.51 0.00 0.00 2.45
2356 3044 1.295792 TCAACAACGTCCTGTGAAGC 58.704 50.000 0.00 0.00 0.00 3.86
2363 3051 0.324943 CAGGGGATCAACAACGTCCT 59.675 55.000 0.00 0.00 32.55 3.85
2366 3054 0.110486 AAGCAGGGGATCAACAACGT 59.890 50.000 0.00 0.00 0.00 3.99
2369 3057 0.968405 GCAAAGCAGGGGATCAACAA 59.032 50.000 0.00 0.00 0.00 2.83
2378 3083 4.904466 GCAATCAGCAAAGCAGGG 57.096 55.556 0.00 0.00 44.79 4.45
2402 3107 2.690881 ACCAGAGGGCGGGCAATA 60.691 61.111 3.27 0.00 37.90 1.90
2433 3158 6.137794 ACAACACGATTACAAAAACCATCA 57.862 33.333 0.00 0.00 0.00 3.07
2544 3276 2.949644 GGTAGCAAAACAGGACAACACT 59.050 45.455 0.00 0.00 0.00 3.55
2572 3304 1.069296 TCAAAAGTGCGGCAGATTTCG 60.069 47.619 1.18 0.00 0.00 3.46
2574 3306 3.665745 AATCAAAAGTGCGGCAGATTT 57.334 38.095 1.18 5.02 0.00 2.17
2587 3319 9.661563 AGATTACAGTCCGTATACAAATCAAAA 57.338 29.630 3.32 0.00 0.00 2.44
2598 3330 8.915036 ACAAGAGATAAAGATTACAGTCCGTAT 58.085 33.333 0.00 0.00 0.00 3.06
2628 3360 6.603997 ACCTCTAGTCACATGGTAAGTAAGAG 59.396 42.308 0.00 0.67 0.00 2.85
2644 3379 6.692486 TGAATGACAAAAGAGACCTCTAGTC 58.308 40.000 14.74 14.74 46.71 2.59
2648 3383 6.777782 AGATTGAATGACAAAAGAGACCTCT 58.222 36.000 0.00 0.00 42.03 3.69
2661 3396 9.539825 ACATATCTCACTACAAGATTGAATGAC 57.460 33.333 0.00 0.00 35.20 3.06
2673 3408 9.696917 CTGCAATACATTACATATCTCACTACA 57.303 33.333 0.00 0.00 0.00 2.74
2686 3421 9.056005 TGGATCTCAAATACTGCAATACATTAC 57.944 33.333 0.00 0.00 0.00 1.89
2688 3423 8.701908 ATGGATCTCAAATACTGCAATACATT 57.298 30.769 0.00 0.00 0.00 2.71
2694 3429 5.951148 TGGAAATGGATCTCAAATACTGCAA 59.049 36.000 0.00 0.00 0.00 4.08
2698 3433 9.347240 CAAGTATGGAAATGGATCTCAAATACT 57.653 33.333 0.00 0.00 31.43 2.12
2699 3434 9.342308 TCAAGTATGGAAATGGATCTCAAATAC 57.658 33.333 0.00 0.00 0.00 1.89
2703 3438 8.493607 TGTATCAAGTATGGAAATGGATCTCAA 58.506 33.333 0.00 0.00 0.00 3.02
2704 3439 8.033178 TGTATCAAGTATGGAAATGGATCTCA 57.967 34.615 0.00 0.00 0.00 3.27
2706 3441 7.935755 CACTGTATCAAGTATGGAAATGGATCT 59.064 37.037 0.00 0.00 0.00 2.75
2707 3442 7.716998 ACACTGTATCAAGTATGGAAATGGATC 59.283 37.037 0.00 0.00 0.00 3.36
2708 3443 7.500227 CACACTGTATCAAGTATGGAAATGGAT 59.500 37.037 0.00 0.00 0.00 3.41
2709 3444 6.823182 CACACTGTATCAAGTATGGAAATGGA 59.177 38.462 0.00 0.00 0.00 3.41
2710 3445 6.458751 GCACACTGTATCAAGTATGGAAATGG 60.459 42.308 0.00 0.00 0.00 3.16
2711 3446 6.458751 GGCACACTGTATCAAGTATGGAAATG 60.459 42.308 0.00 0.00 0.00 2.32
2713 3448 4.941263 GGCACACTGTATCAAGTATGGAAA 59.059 41.667 0.00 0.00 0.00 3.13
2715 3450 3.774766 AGGCACACTGTATCAAGTATGGA 59.225 43.478 0.00 0.00 0.00 3.41
2716 3451 3.873361 CAGGCACACTGTATCAAGTATGG 59.127 47.826 0.00 0.00 42.42 2.74
2747 3482 5.047092 AGGTTCCATCATTCAACAAATGGTC 60.047 40.000 0.00 0.00 44.19 4.02
2749 3484 5.410355 AGGTTCCATCATTCAACAAATGG 57.590 39.130 0.00 0.00 44.19 3.16
2750 3485 5.574055 CGAAGGTTCCATCATTCAACAAATG 59.426 40.000 0.00 0.00 45.22 2.32
2751 3486 5.243730 ACGAAGGTTCCATCATTCAACAAAT 59.756 36.000 0.00 0.00 0.00 2.32
2752 3487 4.582656 ACGAAGGTTCCATCATTCAACAAA 59.417 37.500 0.00 0.00 0.00 2.83
2753 3488 4.141287 ACGAAGGTTCCATCATTCAACAA 58.859 39.130 0.00 0.00 0.00 2.83
2754 3489 3.750371 ACGAAGGTTCCATCATTCAACA 58.250 40.909 0.00 0.00 0.00 3.33
2755 3490 4.475944 CAACGAAGGTTCCATCATTCAAC 58.524 43.478 0.00 0.00 32.98 3.18
2756 3491 3.505680 CCAACGAAGGTTCCATCATTCAA 59.494 43.478 0.00 0.00 32.98 2.69
2757 3492 3.081061 CCAACGAAGGTTCCATCATTCA 58.919 45.455 0.00 0.00 32.98 2.57
2758 3493 3.081804 ACCAACGAAGGTTCCATCATTC 58.918 45.455 0.00 0.00 39.34 2.67
2759 3494 3.081804 GACCAACGAAGGTTCCATCATT 58.918 45.455 5.11 0.00 43.38 2.57
2760 3495 2.305927 AGACCAACGAAGGTTCCATCAT 59.694 45.455 5.11 0.00 43.38 2.45
2762 3497 2.474410 AGACCAACGAAGGTTCCATC 57.526 50.000 5.11 0.00 43.38 3.51
2763 3498 3.170717 TCTAGACCAACGAAGGTTCCAT 58.829 45.455 5.11 0.00 43.38 3.41
2764 3499 2.600790 TCTAGACCAACGAAGGTTCCA 58.399 47.619 5.11 0.00 43.38 3.53
2765 3500 3.672767 TTCTAGACCAACGAAGGTTCC 57.327 47.619 5.11 0.00 43.38 3.62
2766 3501 3.432592 GCTTTCTAGACCAACGAAGGTTC 59.567 47.826 5.11 0.30 43.38 3.62
2767 3502 3.400255 GCTTTCTAGACCAACGAAGGTT 58.600 45.455 5.11 0.00 43.38 3.50
2768 3503 2.289506 GGCTTTCTAGACCAACGAAGGT 60.290 50.000 3.27 3.27 46.82 3.50
2769 3504 2.028020 AGGCTTTCTAGACCAACGAAGG 60.028 50.000 0.00 0.00 0.00 3.46
2770 3505 2.996621 CAGGCTTTCTAGACCAACGAAG 59.003 50.000 0.00 0.00 0.00 3.79
2771 3506 2.870435 GCAGGCTTTCTAGACCAACGAA 60.870 50.000 0.00 0.00 0.00 3.85
2772 3507 1.337823 GCAGGCTTTCTAGACCAACGA 60.338 52.381 0.00 0.00 0.00 3.85
2773 3508 1.079503 GCAGGCTTTCTAGACCAACG 58.920 55.000 0.00 0.00 0.00 4.10
2774 3509 2.079925 CAGCAGGCTTTCTAGACCAAC 58.920 52.381 0.00 0.00 0.00 3.77
2775 3510 1.611673 GCAGCAGGCTTTCTAGACCAA 60.612 52.381 0.00 0.00 40.25 3.67
2776 3511 0.036010 GCAGCAGGCTTTCTAGACCA 60.036 55.000 0.00 0.00 40.25 4.02
2777 3512 2.774044 GCAGCAGGCTTTCTAGACC 58.226 57.895 0.00 0.00 40.25 3.85
2789 3524 0.959372 CCCAAGGTCTGAAGCAGCAG 60.959 60.000 0.00 0.00 37.24 4.24
2820 3555 2.574006 ATGAGCAACCAGAAAGAGCA 57.426 45.000 0.00 0.00 0.00 4.26
2822 3557 2.751806 GGGAATGAGCAACCAGAAAGAG 59.248 50.000 0.00 0.00 0.00 2.85
2841 3576 5.812127 GCTATGAAAATAAACCAAAGCAGGG 59.188 40.000 0.00 0.00 0.00 4.45
2845 3580 8.893727 TCTCTAGCTATGAAAATAAACCAAAGC 58.106 33.333 0.00 0.00 0.00 3.51
2847 3582 8.893727 GCTCTCTAGCTATGAAAATAAACCAAA 58.106 33.333 0.00 0.00 45.85 3.28
2848 3583 8.438676 GCTCTCTAGCTATGAAAATAAACCAA 57.561 34.615 0.00 0.00 45.85 3.67
2865 3600 0.460987 CCAAACAGCCGGCTCTCTAG 60.461 60.000 30.29 18.37 0.00 2.43
2866 3601 1.596934 CCAAACAGCCGGCTCTCTA 59.403 57.895 30.29 0.00 0.00 2.43
2867 3602 2.348998 CCAAACAGCCGGCTCTCT 59.651 61.111 30.29 11.29 0.00 3.10
2868 3603 2.543067 ATCCCAAACAGCCGGCTCTC 62.543 60.000 30.29 0.00 0.00 3.20
2869 3604 2.543067 GATCCCAAACAGCCGGCTCT 62.543 60.000 30.29 13.91 0.00 4.09
2870 3605 2.044946 ATCCCAAACAGCCGGCTC 60.045 61.111 30.29 0.00 0.00 4.70
2871 3606 1.271840 TAGATCCCAAACAGCCGGCT 61.272 55.000 27.08 27.08 0.00 5.52
2872 3607 1.095807 GTAGATCCCAAACAGCCGGC 61.096 60.000 21.89 21.89 0.00 6.13
2873 3608 0.251916 TGTAGATCCCAAACAGCCGG 59.748 55.000 0.00 0.00 0.00 6.13
2874 3609 1.656652 CTGTAGATCCCAAACAGCCG 58.343 55.000 0.00 0.00 34.73 5.52
2875 3610 2.019156 GCCTGTAGATCCCAAACAGCC 61.019 57.143 8.76 0.00 39.42 4.85
2884 3619 3.550437 AGTGACAATGCCTGTAGATCC 57.450 47.619 0.00 0.00 38.84 3.36
2914 3651 8.272176 GTCTCGATGATGTTCAACAGATAAATC 58.728 37.037 0.00 0.00 0.00 2.17
2919 3656 5.077134 TGTCTCGATGATGTTCAACAGAT 57.923 39.130 0.00 0.00 0.00 2.90
2935 3672 8.622157 TCCAGAAGATACTAGTTAAATGTCTCG 58.378 37.037 0.00 0.00 0.00 4.04
2966 3709 2.223340 GCCAGGCACATTTATTCAGACG 60.223 50.000 6.55 0.00 0.00 4.18
2984 3727 1.074405 ACTCATTCTTGCCTTCTGCCA 59.926 47.619 0.00 0.00 40.16 4.92
2985 3728 1.471684 CACTCATTCTTGCCTTCTGCC 59.528 52.381 0.00 0.00 40.16 4.85
3024 3767 8.985922 TCATATATAGATCATACAAGCCAAGCT 58.014 33.333 0.00 0.00 42.56 3.74
3025 3768 9.258826 CTCATATATAGATCATACAAGCCAAGC 57.741 37.037 0.00 0.00 0.00 4.01
3027 3770 9.492730 TCCTCATATATAGATCATACAAGCCAA 57.507 33.333 0.00 0.00 0.00 4.52
3031 3774 9.126151 ACCGTCCTCATATATAGATCATACAAG 57.874 37.037 0.00 0.00 0.00 3.16
3034 3777 9.737427 CAAACCGTCCTCATATATAGATCATAC 57.263 37.037 0.00 0.00 0.00 2.39
3065 3815 2.305927 AGTGCCATAAACTGTACAGGCT 59.694 45.455 26.12 14.86 42.46 4.58
3068 3818 8.542497 TTAACTTAGTGCCATAAACTGTACAG 57.458 34.615 21.44 21.44 0.00 2.74
3082 3832 7.930217 TCAGCCATGATAAATTAACTTAGTGC 58.070 34.615 0.00 0.00 0.00 4.40
3094 3844 8.146412 CGGATATGATAGATCAGCCATGATAAA 58.854 37.037 0.00 0.00 46.39 1.40
3095 3845 7.288621 ACGGATATGATAGATCAGCCATGATAA 59.711 37.037 0.00 0.00 46.39 1.75
3096 3846 6.779539 ACGGATATGATAGATCAGCCATGATA 59.220 38.462 0.00 0.00 46.39 2.15
3098 3848 4.958581 ACGGATATGATAGATCAGCCATGA 59.041 41.667 0.00 0.00 40.64 3.07
3099 3849 5.048507 CACGGATATGATAGATCAGCCATG 58.951 45.833 0.00 0.00 40.64 3.66
3100 3850 4.713814 ACACGGATATGATAGATCAGCCAT 59.286 41.667 0.00 0.00 40.64 4.40
3101 3851 4.089361 ACACGGATATGATAGATCAGCCA 58.911 43.478 0.00 0.00 40.64 4.75
3102 3852 4.727507 ACACGGATATGATAGATCAGCC 57.272 45.455 0.00 0.00 40.64 4.85
3103 3853 4.867047 CCAACACGGATATGATAGATCAGC 59.133 45.833 0.00 0.00 37.27 4.26
3104 3854 6.030548 ACCAACACGGATATGATAGATCAG 57.969 41.667 0.00 0.00 38.09 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.