Multiple sequence alignment - TraesCS4A01G476300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G476300 chr4A 100.000 3200 0 0 1 3200 734879706 734882905 0.000000e+00 5910
1 TraesCS4A01G476300 chr4A 96.449 1408 50 0 1082 2489 736122447 736123854 0.000000e+00 2324
2 TraesCS4A01G476300 chr4A 96.552 725 21 3 2476 3197 736123800 736124523 0.000000e+00 1197
3 TraesCS4A01G476300 chr4A 82.411 1319 209 15 1055 2359 736886696 736888005 0.000000e+00 1129
4 TraesCS4A01G476300 chr4A 82.637 1244 191 19 1055 2290 735559965 735558739 0.000000e+00 1077
5 TraesCS4A01G476300 chr4A 82.787 1220 192 13 1055 2267 735319041 735320249 0.000000e+00 1074
6 TraesCS4A01G476300 chr4A 81.870 1230 205 14 1056 2276 736150001 736151221 0.000000e+00 1020
7 TraesCS4A01G476300 chr4A 98.413 252 3 1 808 1058 736123043 736123294 2.930000e-120 442
8 TraesCS4A01G476300 chr4A 91.270 252 21 1 808 1058 734881383 734881634 3.060000e-90 342
9 TraesCS4A01G476300 chr4A 96.809 94 1 1 1 94 494073511 494073602 4.270000e-34 156
10 TraesCS4A01G476300 chr2B 97.904 811 13 2 1 811 10185871 10185065 0.000000e+00 1400
11 TraesCS4A01G476300 chr2B 89.199 824 35 19 1 810 97491966 97492749 0.000000e+00 979
12 TraesCS4A01G476300 chr2B 95.769 260 8 3 570 827 10185804 10186062 1.780000e-112 416
13 TraesCS4A01G476300 chr2B 95.745 94 2 1 1 94 109133823 109133914 1.990000e-32 150
14 TraesCS4A01G476300 chr6B 97.407 810 16 3 1 810 720517002 720517806 0.000000e+00 1375
15 TraesCS4A01G476300 chr6B 90.821 207 16 1 72 275 3275867 3276073 1.130000e-69 274
16 TraesCS4A01G476300 chr7B 97.062 817 15 3 1 811 433292659 433293472 0.000000e+00 1367
17 TraesCS4A01G476300 chr5B 92.695 835 35 6 1 810 638338268 638339101 0.000000e+00 1181
18 TraesCS4A01G476300 chr5B 92.754 828 42 4 1 810 638346554 638347381 0.000000e+00 1181
19 TraesCS4A01G476300 chr5B 95.745 94 3 1 1 94 248767493 248767401 1.990000e-32 150
20 TraesCS4A01G476300 chr7D 80.974 1335 221 22 1055 2367 5635341 5634018 0.000000e+00 1027
21 TraesCS4A01G476300 chr7D 81.590 1233 209 13 1056 2279 5664133 5662910 0.000000e+00 1003
22 TraesCS4A01G476300 chr7D 80.570 1333 217 31 1055 2358 5484147 5482828 0.000000e+00 989
23 TraesCS4A01G476300 chr7D 81.150 1252 205 22 1055 2297 5446374 5445145 0.000000e+00 976
24 TraesCS4A01G476300 chr3A 88.211 492 35 13 3 473 547469816 547470305 1.670000e-157 566
25 TraesCS4A01G476300 chr6D 84.826 547 23 14 1 507 429468510 429469036 2.220000e-136 496
26 TraesCS4A01G476300 chr2D 88.131 396 17 10 1 385 407974743 407975119 8.150000e-121 444
27 TraesCS4A01G476300 chr4B 97.925 241 3 2 570 810 575767101 575767339 1.780000e-112 416
28 TraesCS4A01G476300 chr4B 93.939 99 4 2 1 98 575767167 575767070 7.150000e-32 148
29 TraesCS4A01G476300 chr1B 97.490 239 4 1 574 812 375808448 375808684 1.070000e-109 407


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G476300 chr4A 734879706 734882905 3199 False 3126 5910 95.635 1 3200 2 chr4A.!!$F5 3199
1 TraesCS4A01G476300 chr4A 736122447 736124523 2076 False 1321 2324 97.138 808 3197 3 chr4A.!!$F6 2389
2 TraesCS4A01G476300 chr4A 736886696 736888005 1309 False 1129 1129 82.411 1055 2359 1 chr4A.!!$F4 1304
3 TraesCS4A01G476300 chr4A 735558739 735559965 1226 True 1077 1077 82.637 1055 2290 1 chr4A.!!$R1 1235
4 TraesCS4A01G476300 chr4A 735319041 735320249 1208 False 1074 1074 82.787 1055 2267 1 chr4A.!!$F2 1212
5 TraesCS4A01G476300 chr4A 736150001 736151221 1220 False 1020 1020 81.870 1056 2276 1 chr4A.!!$F3 1220
6 TraesCS4A01G476300 chr2B 10185065 10185871 806 True 1400 1400 97.904 1 811 1 chr2B.!!$R1 810
7 TraesCS4A01G476300 chr2B 97491966 97492749 783 False 979 979 89.199 1 810 1 chr2B.!!$F2 809
8 TraesCS4A01G476300 chr6B 720517002 720517806 804 False 1375 1375 97.407 1 810 1 chr6B.!!$F2 809
9 TraesCS4A01G476300 chr7B 433292659 433293472 813 False 1367 1367 97.062 1 811 1 chr7B.!!$F1 810
10 TraesCS4A01G476300 chr5B 638338268 638339101 833 False 1181 1181 92.695 1 810 1 chr5B.!!$F1 809
11 TraesCS4A01G476300 chr5B 638346554 638347381 827 False 1181 1181 92.754 1 810 1 chr5B.!!$F2 809
12 TraesCS4A01G476300 chr7D 5634018 5635341 1323 True 1027 1027 80.974 1055 2367 1 chr7D.!!$R3 1312
13 TraesCS4A01G476300 chr7D 5662910 5664133 1223 True 1003 1003 81.590 1056 2279 1 chr7D.!!$R4 1223
14 TraesCS4A01G476300 chr7D 5482828 5484147 1319 True 989 989 80.570 1055 2358 1 chr7D.!!$R2 1303
15 TraesCS4A01G476300 chr7D 5445145 5446374 1229 True 976 976 81.150 1055 2297 1 chr7D.!!$R1 1242
16 TraesCS4A01G476300 chr6D 429468510 429469036 526 False 496 496 84.826 1 507 1 chr6D.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 1082 0.036952 ACTGAACACCATGCTCTCGG 60.037 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2525 2646 0.102844 GCACCAGCAAAACAGAGCAA 59.897 50.0 0.0 0.0 41.58 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
243 297 1.742831 CTTCTCCACTGTCTCCTCTCG 59.257 57.143 0.00 0.00 0.00 4.04
647 733 1.477553 CTGCTTATGTGTGGGCCAAT 58.522 50.000 8.40 0.00 0.00 3.16
811 897 7.498570 TGTGGTAGTTTTTGGTTAAATACTCGT 59.501 33.333 0.00 0.00 38.47 4.18
812 898 8.344831 GTGGTAGTTTTTGGTTAAATACTCGTT 58.655 33.333 0.00 0.00 38.47 3.85
813 899 9.553064 TGGTAGTTTTTGGTTAAATACTCGTTA 57.447 29.630 0.00 0.00 38.47 3.18
822 908 9.715121 TTGGTTAAATACTCGTTAAATCACTCT 57.285 29.630 0.00 0.00 0.00 3.24
823 909 9.362539 TGGTTAAATACTCGTTAAATCACTCTC 57.637 33.333 0.00 0.00 0.00 3.20
824 910 9.362539 GGTTAAATACTCGTTAAATCACTCTCA 57.637 33.333 0.00 0.00 0.00 3.27
827 913 8.467402 AAATACTCGTTAAATCACTCTCACTG 57.533 34.615 0.00 0.00 0.00 3.66
828 914 4.238514 ACTCGTTAAATCACTCTCACTGC 58.761 43.478 0.00 0.00 0.00 4.40
829 915 4.021894 ACTCGTTAAATCACTCTCACTGCT 60.022 41.667 0.00 0.00 0.00 4.24
830 916 4.883083 TCGTTAAATCACTCTCACTGCTT 58.117 39.130 0.00 0.00 0.00 3.91
831 917 4.923871 TCGTTAAATCACTCTCACTGCTTC 59.076 41.667 0.00 0.00 0.00 3.86
832 918 4.686091 CGTTAAATCACTCTCACTGCTTCA 59.314 41.667 0.00 0.00 0.00 3.02
833 919 5.388890 CGTTAAATCACTCTCACTGCTTCAC 60.389 44.000 0.00 0.00 0.00 3.18
834 920 4.348863 AAATCACTCTCACTGCTTCACT 57.651 40.909 0.00 0.00 0.00 3.41
835 921 4.348863 AATCACTCTCACTGCTTCACTT 57.651 40.909 0.00 0.00 0.00 3.16
836 922 3.103447 TCACTCTCACTGCTTCACTTG 57.897 47.619 0.00 0.00 0.00 3.16
837 923 1.530293 CACTCTCACTGCTTCACTTGC 59.470 52.381 0.00 0.00 0.00 4.01
838 924 1.155042 CTCTCACTGCTTCACTTGCC 58.845 55.000 0.00 0.00 0.00 4.52
839 925 0.469494 TCTCACTGCTTCACTTGCCA 59.531 50.000 0.00 0.00 0.00 4.92
840 926 0.873054 CTCACTGCTTCACTTGCCAG 59.127 55.000 0.00 0.00 0.00 4.85
841 927 0.469494 TCACTGCTTCACTTGCCAGA 59.531 50.000 0.00 0.00 0.00 3.86
842 928 1.072806 TCACTGCTTCACTTGCCAGAT 59.927 47.619 0.00 0.00 0.00 2.90
843 929 1.884579 CACTGCTTCACTTGCCAGATT 59.115 47.619 0.00 0.00 0.00 2.40
844 930 2.295349 CACTGCTTCACTTGCCAGATTT 59.705 45.455 0.00 0.00 0.00 2.17
845 931 3.503363 CACTGCTTCACTTGCCAGATTTA 59.497 43.478 0.00 0.00 0.00 1.40
846 932 4.157289 CACTGCTTCACTTGCCAGATTTAT 59.843 41.667 0.00 0.00 0.00 1.40
847 933 4.157289 ACTGCTTCACTTGCCAGATTTATG 59.843 41.667 0.00 0.00 0.00 1.90
848 934 4.081406 TGCTTCACTTGCCAGATTTATGT 58.919 39.130 0.00 0.00 0.00 2.29
849 935 5.252547 TGCTTCACTTGCCAGATTTATGTA 58.747 37.500 0.00 0.00 0.00 2.29
850 936 5.123820 TGCTTCACTTGCCAGATTTATGTAC 59.876 40.000 0.00 0.00 0.00 2.90
851 937 5.727791 GCTTCACTTGCCAGATTTATGTACG 60.728 44.000 0.00 0.00 0.00 3.67
852 938 3.621268 TCACTTGCCAGATTTATGTACGC 59.379 43.478 0.00 0.00 0.00 4.42
853 939 3.623060 CACTTGCCAGATTTATGTACGCT 59.377 43.478 0.00 0.00 0.00 5.07
854 940 4.094887 CACTTGCCAGATTTATGTACGCTT 59.905 41.667 0.00 0.00 0.00 4.68
855 941 4.094887 ACTTGCCAGATTTATGTACGCTTG 59.905 41.667 0.00 0.00 0.00 4.01
856 942 3.867857 TGCCAGATTTATGTACGCTTGA 58.132 40.909 0.00 0.00 0.00 3.02
857 943 3.871006 TGCCAGATTTATGTACGCTTGAG 59.129 43.478 0.00 0.00 0.00 3.02
858 944 3.248602 GCCAGATTTATGTACGCTTGAGG 59.751 47.826 0.00 0.00 0.00 3.86
859 945 3.809832 CCAGATTTATGTACGCTTGAGGG 59.190 47.826 0.00 0.00 0.00 4.30
860 946 4.442893 CCAGATTTATGTACGCTTGAGGGA 60.443 45.833 1.79 0.00 0.00 4.20
861 947 5.300752 CAGATTTATGTACGCTTGAGGGAT 58.699 41.667 1.79 0.00 0.00 3.85
862 948 5.760253 CAGATTTATGTACGCTTGAGGGATT 59.240 40.000 1.79 0.00 0.00 3.01
863 949 5.760253 AGATTTATGTACGCTTGAGGGATTG 59.240 40.000 1.79 0.00 0.00 2.67
864 950 4.481368 TTATGTACGCTTGAGGGATTGT 57.519 40.909 1.79 0.00 0.00 2.71
865 951 2.380084 TGTACGCTTGAGGGATTGTC 57.620 50.000 1.79 0.00 0.00 3.18
866 952 1.899814 TGTACGCTTGAGGGATTGTCT 59.100 47.619 1.79 0.00 0.00 3.41
867 953 2.301870 TGTACGCTTGAGGGATTGTCTT 59.698 45.455 1.79 0.00 0.00 3.01
868 954 2.100605 ACGCTTGAGGGATTGTCTTC 57.899 50.000 1.79 0.00 0.00 2.87
869 955 1.339151 ACGCTTGAGGGATTGTCTTCC 60.339 52.381 1.79 0.00 34.83 3.46
878 964 3.350219 GGATTGTCTTCCCTACTGCAA 57.650 47.619 0.00 0.00 0.00 4.08
879 965 3.010420 GGATTGTCTTCCCTACTGCAAC 58.990 50.000 0.00 0.00 0.00 4.17
880 966 3.307762 GGATTGTCTTCCCTACTGCAACT 60.308 47.826 0.00 0.00 0.00 3.16
881 967 3.857157 TTGTCTTCCCTACTGCAACTT 57.143 42.857 0.00 0.00 0.00 2.66
882 968 3.857157 TGTCTTCCCTACTGCAACTTT 57.143 42.857 0.00 0.00 0.00 2.66
883 969 3.740115 TGTCTTCCCTACTGCAACTTTC 58.260 45.455 0.00 0.00 0.00 2.62
884 970 3.075148 GTCTTCCCTACTGCAACTTTCC 58.925 50.000 0.00 0.00 0.00 3.13
885 971 2.708861 TCTTCCCTACTGCAACTTTCCA 59.291 45.455 0.00 0.00 0.00 3.53
886 972 2.859165 TCCCTACTGCAACTTTCCAG 57.141 50.000 0.00 0.00 35.26 3.86
887 973 1.168714 CCCTACTGCAACTTTCCAGC 58.831 55.000 0.00 0.00 32.37 4.85
888 974 0.798776 CCTACTGCAACTTTCCAGCG 59.201 55.000 0.00 0.00 32.37 5.18
889 975 1.512926 CTACTGCAACTTTCCAGCGT 58.487 50.000 0.00 0.00 32.37 5.07
890 976 2.611971 CCTACTGCAACTTTCCAGCGTA 60.612 50.000 0.00 0.00 32.37 4.42
891 977 2.185004 ACTGCAACTTTCCAGCGTAT 57.815 45.000 0.00 0.00 32.37 3.06
892 978 1.806542 ACTGCAACTTTCCAGCGTATG 59.193 47.619 0.00 0.00 32.37 2.39
893 979 1.806542 CTGCAACTTTCCAGCGTATGT 59.193 47.619 0.00 0.00 0.00 2.29
894 980 2.226330 TGCAACTTTCCAGCGTATGTT 58.774 42.857 0.00 0.00 0.00 2.71
895 981 2.621055 TGCAACTTTCCAGCGTATGTTT 59.379 40.909 0.00 0.00 0.00 2.83
896 982 2.979813 GCAACTTTCCAGCGTATGTTTG 59.020 45.455 0.00 0.00 0.00 2.93
897 983 3.304391 GCAACTTTCCAGCGTATGTTTGA 60.304 43.478 0.00 0.00 0.00 2.69
898 984 4.615912 GCAACTTTCCAGCGTATGTTTGAT 60.616 41.667 0.00 0.00 0.00 2.57
899 985 5.460646 CAACTTTCCAGCGTATGTTTGATT 58.539 37.500 0.00 0.00 0.00 2.57
900 986 5.046910 ACTTTCCAGCGTATGTTTGATTG 57.953 39.130 0.00 0.00 0.00 2.67
901 987 4.759693 ACTTTCCAGCGTATGTTTGATTGA 59.240 37.500 0.00 0.00 0.00 2.57
902 988 5.415701 ACTTTCCAGCGTATGTTTGATTGAT 59.584 36.000 0.00 0.00 0.00 2.57
903 989 4.880886 TCCAGCGTATGTTTGATTGATG 57.119 40.909 0.00 0.00 0.00 3.07
904 990 4.260985 TCCAGCGTATGTTTGATTGATGT 58.739 39.130 0.00 0.00 0.00 3.06
905 991 4.699735 TCCAGCGTATGTTTGATTGATGTT 59.300 37.500 0.00 0.00 0.00 2.71
906 992 5.030295 CCAGCGTATGTTTGATTGATGTTC 58.970 41.667 0.00 0.00 0.00 3.18
907 993 5.030295 CAGCGTATGTTTGATTGATGTTCC 58.970 41.667 0.00 0.00 0.00 3.62
908 994 4.699735 AGCGTATGTTTGATTGATGTTCCA 59.300 37.500 0.00 0.00 0.00 3.53
909 995 5.182950 AGCGTATGTTTGATTGATGTTCCAA 59.817 36.000 0.00 0.00 0.00 3.53
910 996 5.861251 GCGTATGTTTGATTGATGTTCCAAA 59.139 36.000 0.00 0.00 0.00 3.28
911 997 6.364706 GCGTATGTTTGATTGATGTTCCAAAA 59.635 34.615 0.00 0.00 31.39 2.44
912 998 7.619161 GCGTATGTTTGATTGATGTTCCAAAAC 60.619 37.037 0.00 0.00 35.85 2.43
913 999 7.594758 CGTATGTTTGATTGATGTTCCAAAACT 59.405 33.333 0.00 0.00 36.30 2.66
914 1000 7.951530 ATGTTTGATTGATGTTCCAAAACTC 57.048 32.000 0.00 0.00 36.30 3.01
915 1001 6.871844 TGTTTGATTGATGTTCCAAAACTCA 58.128 32.000 0.00 0.00 36.30 3.41
916 1002 6.756074 TGTTTGATTGATGTTCCAAAACTCAC 59.244 34.615 0.00 0.00 36.30 3.51
917 1003 5.452078 TGATTGATGTTCCAAAACTCACC 57.548 39.130 0.00 0.00 36.30 4.02
918 1004 4.280677 TGATTGATGTTCCAAAACTCACCC 59.719 41.667 0.00 0.00 36.30 4.61
919 1005 3.593442 TGATGTTCCAAAACTCACCCT 57.407 42.857 0.00 0.00 36.30 4.34
920 1006 3.486383 TGATGTTCCAAAACTCACCCTC 58.514 45.455 0.00 0.00 36.30 4.30
921 1007 1.961793 TGTTCCAAAACTCACCCTCG 58.038 50.000 0.00 0.00 36.30 4.63
922 1008 1.487142 TGTTCCAAAACTCACCCTCGA 59.513 47.619 0.00 0.00 36.30 4.04
923 1009 2.143925 GTTCCAAAACTCACCCTCGAG 58.856 52.381 5.13 5.13 39.05 4.04
925 1011 1.070134 TCCAAAACTCACCCTCGAGTG 59.930 52.381 12.31 1.61 45.56 3.51
926 1012 1.202651 CCAAAACTCACCCTCGAGTGT 60.203 52.381 12.31 2.43 45.56 3.55
927 1013 1.867233 CAAAACTCACCCTCGAGTGTG 59.133 52.381 20.48 20.48 45.56 3.82
928 1014 1.120530 AAACTCACCCTCGAGTGTGT 58.879 50.000 24.39 15.32 45.56 3.72
929 1015 0.674534 AACTCACCCTCGAGTGTGTC 59.325 55.000 24.39 0.00 45.56 3.67
930 1016 0.178987 ACTCACCCTCGAGTGTGTCT 60.179 55.000 24.39 10.37 44.59 3.41
931 1017 0.523966 CTCACCCTCGAGTGTGTCTC 59.476 60.000 24.39 0.00 38.91 3.36
932 1018 0.179001 TCACCCTCGAGTGTGTCTCA 60.179 55.000 24.39 5.58 42.88 3.27
933 1019 0.039074 CACCCTCGAGTGTGTCTCAC 60.039 60.000 18.60 0.00 46.46 3.51
935 1021 0.242286 CCCTCGAGTGTGTCTCACAG 59.758 60.000 12.31 1.84 45.43 3.66
937 1023 1.338337 CCTCGAGTGTGTCTCACAGTT 59.662 52.381 12.31 0.25 46.41 3.16
938 1024 2.223829 CCTCGAGTGTGTCTCACAGTTT 60.224 50.000 12.31 0.00 46.41 2.66
939 1025 3.046390 CTCGAGTGTGTCTCACAGTTTC 58.954 50.000 3.62 5.64 46.41 2.78
940 1026 1.781429 CGAGTGTGTCTCACAGTTTCG 59.219 52.381 10.82 12.01 46.41 3.46
941 1027 2.540973 CGAGTGTGTCTCACAGTTTCGA 60.541 50.000 17.83 0.00 46.41 3.71
942 1028 3.046390 GAGTGTGTCTCACAGTTTCGAG 58.954 50.000 10.82 0.00 46.41 4.04
943 1029 2.427453 AGTGTGTCTCACAGTTTCGAGT 59.573 45.455 7.72 0.00 44.43 4.18
944 1030 2.789893 GTGTGTCTCACAGTTTCGAGTC 59.210 50.000 2.71 0.00 45.43 3.36
945 1031 2.223735 TGTGTCTCACAGTTTCGAGTCC 60.224 50.000 0.00 0.00 39.62 3.85
946 1032 2.028876 TGTCTCACAGTTTCGAGTCCA 58.971 47.619 0.00 0.00 0.00 4.02
947 1033 2.034685 TGTCTCACAGTTTCGAGTCCAG 59.965 50.000 0.00 0.00 0.00 3.86
948 1034 1.000163 TCTCACAGTTTCGAGTCCAGC 60.000 52.381 0.00 0.00 0.00 4.85
949 1035 0.318699 TCACAGTTTCGAGTCCAGCG 60.319 55.000 0.00 0.00 0.00 5.18
950 1036 1.664965 ACAGTTTCGAGTCCAGCGC 60.665 57.895 0.00 0.00 0.00 5.92
951 1037 1.664649 CAGTTTCGAGTCCAGCGCA 60.665 57.895 11.47 0.00 0.00 6.09
952 1038 1.664965 AGTTTCGAGTCCAGCGCAC 60.665 57.895 11.47 0.00 0.00 5.34
953 1039 1.954146 GTTTCGAGTCCAGCGCACA 60.954 57.895 11.47 0.00 0.00 4.57
954 1040 1.954146 TTTCGAGTCCAGCGCACAC 60.954 57.895 11.47 2.16 0.00 3.82
955 1041 2.363711 TTTCGAGTCCAGCGCACACT 62.364 55.000 11.47 8.04 0.00 3.55
956 1042 2.749110 TTCGAGTCCAGCGCACACTC 62.749 60.000 11.47 16.10 34.36 3.51
957 1043 2.340078 GAGTCCAGCGCACACTCA 59.660 61.111 21.78 0.00 37.17 3.41
958 1044 1.300931 GAGTCCAGCGCACACTCAA 60.301 57.895 21.78 0.00 37.17 3.02
959 1045 0.671781 GAGTCCAGCGCACACTCAAT 60.672 55.000 21.78 0.00 37.17 2.57
960 1046 0.952497 AGTCCAGCGCACACTCAATG 60.952 55.000 11.47 0.00 0.00 2.82
961 1047 1.071299 TCCAGCGCACACTCAATGT 59.929 52.632 11.47 0.00 44.81 2.71
962 1048 0.534877 TCCAGCGCACACTCAATGTT 60.535 50.000 11.47 0.00 40.64 2.71
963 1049 1.155889 CCAGCGCACACTCAATGTTA 58.844 50.000 11.47 0.00 40.64 2.41
964 1050 1.129251 CCAGCGCACACTCAATGTTAG 59.871 52.381 11.47 0.00 40.64 2.34
965 1051 0.798776 AGCGCACACTCAATGTTAGC 59.201 50.000 11.47 0.00 40.64 3.09
966 1052 0.516877 GCGCACACTCAATGTTAGCA 59.483 50.000 0.30 0.00 40.64 3.49
967 1053 1.464687 GCGCACACTCAATGTTAGCAG 60.465 52.381 0.30 0.00 40.64 4.24
968 1054 1.800586 CGCACACTCAATGTTAGCAGT 59.199 47.619 0.00 0.00 40.64 4.40
969 1055 2.159787 CGCACACTCAATGTTAGCAGTC 60.160 50.000 0.00 0.00 40.64 3.51
970 1056 2.160417 GCACACTCAATGTTAGCAGTCC 59.840 50.000 0.00 0.00 40.64 3.85
971 1057 3.668447 CACACTCAATGTTAGCAGTCCT 58.332 45.455 0.00 0.00 40.64 3.85
972 1058 3.434641 CACACTCAATGTTAGCAGTCCTG 59.565 47.826 0.00 0.00 40.64 3.86
973 1059 3.071602 ACACTCAATGTTAGCAGTCCTGT 59.928 43.478 0.00 0.00 38.98 4.00
974 1060 4.283467 ACACTCAATGTTAGCAGTCCTGTA 59.717 41.667 0.00 0.00 38.98 2.74
975 1061 5.221641 ACACTCAATGTTAGCAGTCCTGTAA 60.222 40.000 0.00 0.00 38.98 2.41
976 1062 5.877012 CACTCAATGTTAGCAGTCCTGTAAT 59.123 40.000 0.00 0.00 0.00 1.89
977 1063 7.041721 CACTCAATGTTAGCAGTCCTGTAATA 58.958 38.462 0.00 0.00 0.00 0.98
978 1064 7.010552 CACTCAATGTTAGCAGTCCTGTAATAC 59.989 40.741 0.00 0.00 0.00 1.89
979 1065 7.093289 ACTCAATGTTAGCAGTCCTGTAATACT 60.093 37.037 0.00 0.00 0.00 2.12
980 1066 7.041721 TCAATGTTAGCAGTCCTGTAATACTG 58.958 38.462 0.00 0.00 44.79 2.74
981 1067 6.791867 ATGTTAGCAGTCCTGTAATACTGA 57.208 37.500 6.65 0.00 44.79 3.41
982 1068 6.599356 TGTTAGCAGTCCTGTAATACTGAA 57.401 37.500 6.65 0.00 44.79 3.02
983 1069 6.395629 TGTTAGCAGTCCTGTAATACTGAAC 58.604 40.000 6.65 3.98 44.79 3.18
984 1070 6.014925 TGTTAGCAGTCCTGTAATACTGAACA 60.015 38.462 6.65 6.24 44.79 3.18
985 1071 4.822026 AGCAGTCCTGTAATACTGAACAC 58.178 43.478 6.65 0.00 44.79 3.32
986 1072 3.933332 GCAGTCCTGTAATACTGAACACC 59.067 47.826 6.65 0.00 44.79 4.16
987 1073 4.562757 GCAGTCCTGTAATACTGAACACCA 60.563 45.833 6.65 0.00 44.79 4.17
988 1074 5.734720 CAGTCCTGTAATACTGAACACCAT 58.265 41.667 0.00 0.00 44.79 3.55
989 1075 5.582269 CAGTCCTGTAATACTGAACACCATG 59.418 44.000 0.00 0.00 44.79 3.66
990 1076 4.332819 GTCCTGTAATACTGAACACCATGC 59.667 45.833 0.00 0.00 0.00 4.06
991 1077 4.225042 TCCTGTAATACTGAACACCATGCT 59.775 41.667 0.00 0.00 0.00 3.79
992 1078 4.572389 CCTGTAATACTGAACACCATGCTC 59.428 45.833 0.00 0.00 0.00 4.26
993 1079 5.420725 TGTAATACTGAACACCATGCTCT 57.579 39.130 0.00 0.00 0.00 4.09
994 1080 5.419542 TGTAATACTGAACACCATGCTCTC 58.580 41.667 0.00 0.00 0.00 3.20
995 1081 2.654749 TACTGAACACCATGCTCTCG 57.345 50.000 0.00 0.00 0.00 4.04
996 1082 0.036952 ACTGAACACCATGCTCTCGG 60.037 55.000 0.00 0.00 0.00 4.63
997 1083 1.364626 CTGAACACCATGCTCTCGGC 61.365 60.000 0.00 0.00 42.22 5.54
998 1084 1.078848 GAACACCATGCTCTCGGCT 60.079 57.895 0.00 0.00 42.39 5.52
999 1085 1.364626 GAACACCATGCTCTCGGCTG 61.365 60.000 0.00 0.00 42.39 4.85
1000 1086 1.830587 AACACCATGCTCTCGGCTGA 61.831 55.000 0.00 0.00 42.39 4.26
1001 1087 1.145598 CACCATGCTCTCGGCTGAT 59.854 57.895 0.00 0.00 42.39 2.90
1002 1088 1.145598 ACCATGCTCTCGGCTGATG 59.854 57.895 0.00 0.00 42.39 3.07
1003 1089 1.597302 CCATGCTCTCGGCTGATGG 60.597 63.158 0.00 0.00 42.39 3.51
1004 1090 1.145598 CATGCTCTCGGCTGATGGT 59.854 57.895 0.00 0.00 42.39 3.55
1005 1091 0.879400 CATGCTCTCGGCTGATGGTC 60.879 60.000 0.00 0.00 42.39 4.02
1006 1092 1.047596 ATGCTCTCGGCTGATGGTCT 61.048 55.000 0.00 0.00 42.39 3.85
1007 1093 1.067250 GCTCTCGGCTGATGGTCTC 59.933 63.158 0.00 0.00 38.06 3.36
1008 1094 1.670949 GCTCTCGGCTGATGGTCTCA 61.671 60.000 0.00 0.00 38.06 3.27
1009 1095 0.102120 CTCTCGGCTGATGGTCTCAC 59.898 60.000 0.00 0.00 0.00 3.51
1010 1096 0.611896 TCTCGGCTGATGGTCTCACA 60.612 55.000 0.00 0.00 0.00 3.58
1011 1097 0.179116 CTCGGCTGATGGTCTCACAG 60.179 60.000 0.00 0.00 35.14 3.66
1012 1098 0.900182 TCGGCTGATGGTCTCACAGT 60.900 55.000 0.00 0.00 34.60 3.55
1013 1099 0.036952 CGGCTGATGGTCTCACAGTT 60.037 55.000 0.00 0.00 34.60 3.16
1014 1100 1.204704 CGGCTGATGGTCTCACAGTTA 59.795 52.381 0.00 0.00 34.60 2.24
1015 1101 2.622436 GGCTGATGGTCTCACAGTTAC 58.378 52.381 0.00 0.00 34.60 2.50
1016 1102 2.028112 GGCTGATGGTCTCACAGTTACA 60.028 50.000 0.00 0.00 34.60 2.41
1017 1103 3.557054 GGCTGATGGTCTCACAGTTACAA 60.557 47.826 0.00 0.00 34.60 2.41
1018 1104 3.433615 GCTGATGGTCTCACAGTTACAAC 59.566 47.826 0.00 0.00 34.60 3.32
1019 1105 4.631131 CTGATGGTCTCACAGTTACAACA 58.369 43.478 0.00 0.00 0.00 3.33
1020 1106 5.029807 TGATGGTCTCACAGTTACAACAA 57.970 39.130 0.00 0.00 0.00 2.83
1021 1107 5.620206 TGATGGTCTCACAGTTACAACAAT 58.380 37.500 0.00 0.00 0.00 2.71
1022 1108 5.700832 TGATGGTCTCACAGTTACAACAATC 59.299 40.000 0.00 0.00 0.00 2.67
1023 1109 5.029807 TGGTCTCACAGTTACAACAATCA 57.970 39.130 0.00 0.00 0.00 2.57
1024 1110 4.814234 TGGTCTCACAGTTACAACAATCAC 59.186 41.667 0.00 0.00 0.00 3.06
1025 1111 5.057149 GGTCTCACAGTTACAACAATCACT 58.943 41.667 0.00 0.00 0.00 3.41
1026 1112 5.177696 GGTCTCACAGTTACAACAATCACTC 59.822 44.000 0.00 0.00 0.00 3.51
1027 1113 5.986135 GTCTCACAGTTACAACAATCACTCT 59.014 40.000 0.00 0.00 0.00 3.24
1028 1114 6.480320 GTCTCACAGTTACAACAATCACTCTT 59.520 38.462 0.00 0.00 0.00 2.85
1029 1115 7.652105 GTCTCACAGTTACAACAATCACTCTTA 59.348 37.037 0.00 0.00 0.00 2.10
1030 1116 7.652105 TCTCACAGTTACAACAATCACTCTTAC 59.348 37.037 0.00 0.00 0.00 2.34
1031 1117 7.269316 TCACAGTTACAACAATCACTCTTACA 58.731 34.615 0.00 0.00 0.00 2.41
1032 1118 7.766738 TCACAGTTACAACAATCACTCTTACAA 59.233 33.333 0.00 0.00 0.00 2.41
1033 1119 8.064222 CACAGTTACAACAATCACTCTTACAAG 58.936 37.037 0.00 0.00 0.00 3.16
1034 1120 7.985184 ACAGTTACAACAATCACTCTTACAAGA 59.015 33.333 0.00 0.00 0.00 3.02
1035 1121 8.993121 CAGTTACAACAATCACTCTTACAAGAT 58.007 33.333 0.00 0.00 33.93 2.40
1038 1124 9.990360 TTACAACAATCACTCTTACAAGATACA 57.010 29.630 0.00 0.00 33.93 2.29
1039 1125 8.902540 ACAACAATCACTCTTACAAGATACAA 57.097 30.769 0.00 0.00 33.93 2.41
1040 1126 8.993121 ACAACAATCACTCTTACAAGATACAAG 58.007 33.333 0.00 0.00 33.93 3.16
1041 1127 8.446273 CAACAATCACTCTTACAAGATACAAGG 58.554 37.037 0.00 0.00 33.93 3.61
1042 1128 7.907389 ACAATCACTCTTACAAGATACAAGGA 58.093 34.615 0.00 0.00 33.93 3.36
1043 1129 8.375506 ACAATCACTCTTACAAGATACAAGGAA 58.624 33.333 0.00 0.00 33.93 3.36
1044 1130 8.660373 CAATCACTCTTACAAGATACAAGGAAC 58.340 37.037 0.00 0.00 33.93 3.62
1045 1131 6.698380 TCACTCTTACAAGATACAAGGAACC 58.302 40.000 0.00 0.00 33.93 3.62
1046 1132 6.269077 TCACTCTTACAAGATACAAGGAACCA 59.731 38.462 0.00 0.00 33.93 3.67
1047 1133 7.038302 TCACTCTTACAAGATACAAGGAACCAT 60.038 37.037 0.00 0.00 33.93 3.55
1048 1134 7.607991 CACTCTTACAAGATACAAGGAACCATT 59.392 37.037 0.00 0.00 33.93 3.16
1049 1135 7.824779 ACTCTTACAAGATACAAGGAACCATTC 59.175 37.037 0.00 0.00 33.93 2.67
1050 1136 7.685481 TCTTACAAGATACAAGGAACCATTCA 58.315 34.615 0.00 0.00 0.00 2.57
1051 1137 8.328758 TCTTACAAGATACAAGGAACCATTCAT 58.671 33.333 0.00 0.00 0.00 2.57
1052 1138 8.877864 TTACAAGATACAAGGAACCATTCATT 57.122 30.769 0.00 0.00 33.36 2.57
1053 1139 7.781324 ACAAGATACAAGGAACCATTCATTT 57.219 32.000 0.00 0.00 30.22 2.32
1060 1146 6.458210 ACAAGGAACCATTCATTTCATTCAC 58.542 36.000 0.00 0.00 30.22 3.18
1258 1344 1.535204 GGTTCCACCGTCGGGACTTA 61.535 60.000 17.28 0.00 36.97 2.24
1530 1616 1.207488 TAGGGTTGGCACATGGAGCT 61.207 55.000 11.46 0.00 39.30 4.09
1554 1640 5.483231 TGAATGTTTGCCATTATCCCTTGAA 59.517 36.000 0.00 0.00 43.87 2.69
1605 1691 3.446873 CAGCTGACTTCCTCTGTACTGAT 59.553 47.826 8.42 0.00 0.00 2.90
1614 1700 2.290260 CCTCTGTACTGATTGGCCACAA 60.290 50.000 3.88 0.00 41.59 3.33
1651 1737 1.187567 AGCCAATTGCAGAACCACCC 61.188 55.000 0.00 0.00 44.83 4.61
1663 1749 2.714250 AGAACCACCCCATGTTTGTCTA 59.286 45.455 0.00 0.00 0.00 2.59
1667 1753 3.075283 ACCACCCCATGTTTGTCTATTGA 59.925 43.478 0.00 0.00 0.00 2.57
1735 1821 1.571919 ATGTACGCTCGAAGGATTGC 58.428 50.000 0.00 0.00 0.00 3.56
1749 1835 1.001248 ATTGCCTTCCCTGCTGCAT 59.999 52.632 1.31 0.00 33.08 3.96
1802 1888 1.458777 TCACCCCCGAGTGTGTCTT 60.459 57.895 0.00 0.00 38.91 3.01
1827 1913 2.356313 CGAGTCCAGCGCACACTT 60.356 61.111 11.47 0.00 0.00 3.16
1842 1928 3.402110 CACACTTGATGTTAGCAGTCCA 58.598 45.455 0.00 0.00 40.64 4.02
1925 2017 4.533311 AGGATGCAAGGAACCATTCATTTT 59.467 37.500 0.00 0.00 30.22 1.82
2009 2101 2.205022 TCCCTGCCAACAAATCTGAG 57.795 50.000 0.00 0.00 0.00 3.35
2452 2573 2.071688 CATGATAGCCGTGCTACTCC 57.928 55.000 7.62 2.65 44.24 3.85
2453 2574 1.615883 CATGATAGCCGTGCTACTCCT 59.384 52.381 7.62 0.00 44.24 3.69
2454 2575 2.651382 TGATAGCCGTGCTACTCCTA 57.349 50.000 7.62 0.00 44.24 2.94
2455 2576 2.228059 TGATAGCCGTGCTACTCCTAC 58.772 52.381 7.62 0.00 44.24 3.18
2456 2577 2.158652 TGATAGCCGTGCTACTCCTACT 60.159 50.000 7.62 0.00 44.24 2.57
2457 2578 1.964552 TAGCCGTGCTACTCCTACTC 58.035 55.000 1.99 0.00 40.44 2.59
2458 2579 0.256464 AGCCGTGCTACTCCTACTCT 59.744 55.000 0.00 0.00 36.99 3.24
2459 2580 1.489649 AGCCGTGCTACTCCTACTCTA 59.510 52.381 0.00 0.00 36.99 2.43
2460 2581 1.874872 GCCGTGCTACTCCTACTCTAG 59.125 57.143 0.00 0.00 0.00 2.43
2461 2582 2.485124 GCCGTGCTACTCCTACTCTAGA 60.485 54.545 0.00 0.00 0.00 2.43
2462 2583 3.806380 CCGTGCTACTCCTACTCTAGAA 58.194 50.000 0.00 0.00 0.00 2.10
2463 2584 3.810941 CCGTGCTACTCCTACTCTAGAAG 59.189 52.174 0.00 0.00 0.00 2.85
2464 2585 4.443175 CCGTGCTACTCCTACTCTAGAAGA 60.443 50.000 0.00 0.00 0.00 2.87
2465 2586 4.508861 CGTGCTACTCCTACTCTAGAAGAC 59.491 50.000 0.00 0.00 0.00 3.01
2466 2587 5.430007 GTGCTACTCCTACTCTAGAAGACA 58.570 45.833 0.00 0.00 0.00 3.41
2467 2588 5.526111 GTGCTACTCCTACTCTAGAAGACAG 59.474 48.000 0.00 0.00 0.00 3.51
2468 2589 4.514066 GCTACTCCTACTCTAGAAGACAGC 59.486 50.000 0.00 0.00 0.00 4.40
2469 2590 3.893521 ACTCCTACTCTAGAAGACAGCC 58.106 50.000 0.00 0.00 0.00 4.85
2470 2591 3.526019 ACTCCTACTCTAGAAGACAGCCT 59.474 47.826 0.00 0.00 0.00 4.58
2471 2592 4.017867 ACTCCTACTCTAGAAGACAGCCTT 60.018 45.833 0.00 0.00 37.93 4.35
2472 2593 4.936802 TCCTACTCTAGAAGACAGCCTTT 58.063 43.478 0.00 0.00 34.68 3.11
2473 2594 4.707448 TCCTACTCTAGAAGACAGCCTTTG 59.293 45.833 0.00 0.00 34.68 2.77
2474 2595 4.464597 CCTACTCTAGAAGACAGCCTTTGT 59.535 45.833 0.00 0.00 44.55 2.83
2475 2596 5.652891 CCTACTCTAGAAGACAGCCTTTGTA 59.347 44.000 0.00 0.00 41.05 2.41
2476 2597 6.322712 CCTACTCTAGAAGACAGCCTTTGTAT 59.677 42.308 0.00 0.00 41.05 2.29
2477 2598 5.971763 ACTCTAGAAGACAGCCTTTGTATG 58.028 41.667 0.00 0.00 41.05 2.39
2478 2599 5.717178 ACTCTAGAAGACAGCCTTTGTATGA 59.283 40.000 0.00 0.00 41.05 2.15
2479 2600 6.382570 ACTCTAGAAGACAGCCTTTGTATGAT 59.617 38.462 0.00 0.00 41.05 2.45
2480 2601 7.561722 ACTCTAGAAGACAGCCTTTGTATGATA 59.438 37.037 0.00 0.00 41.05 2.15
2481 2602 7.946207 TCTAGAAGACAGCCTTTGTATGATAG 58.054 38.462 0.00 0.00 41.05 2.08
2482 2603 5.363939 AGAAGACAGCCTTTGTATGATAGC 58.636 41.667 0.00 0.00 41.05 2.97
2483 2604 4.078639 AGACAGCCTTTGTATGATAGCC 57.921 45.455 0.00 0.00 41.05 3.93
2484 2605 2.802816 GACAGCCTTTGTATGATAGCCG 59.197 50.000 0.00 0.00 41.05 5.52
2485 2606 2.170607 ACAGCCTTTGTATGATAGCCGT 59.829 45.455 0.00 0.00 38.56 5.68
2492 2613 3.643159 TGTATGATAGCCGTGCTACTG 57.357 47.619 7.62 0.00 44.24 2.74
2532 2653 4.514441 CCTTTGTATGATAGCCTTGCTCTG 59.486 45.833 0.00 0.00 40.44 3.35
2539 2660 2.276732 TAGCCTTGCTCTGTTTTGCT 57.723 45.000 0.00 0.00 40.44 3.91
2559 2680 2.221169 TGGTGCTGTCAGTGAAATGTC 58.779 47.619 0.93 0.00 0.00 3.06
2622 2743 2.206576 ACAATCAGGAGCTGGGAAAC 57.793 50.000 0.00 0.00 31.51 2.78
2794 2915 2.675658 TCCCCTGTTTTCCCTTTCAG 57.324 50.000 0.00 0.00 0.00 3.02
2810 2931 4.281688 CCTTTCAGGAACAATGTGGACAAT 59.718 41.667 0.00 0.00 37.67 2.71
2939 3060 9.803315 ATATAAGAGCATTTCGATCGCTATTTA 57.197 29.630 11.09 10.97 38.16 1.40
3036 3157 4.783036 CGCTTCATTACAGTCAAAATCACG 59.217 41.667 0.00 0.00 0.00 4.35
3039 3160 7.295201 GCTTCATTACAGTCAAAATCACGTTA 58.705 34.615 0.00 0.00 0.00 3.18
3049 3170 7.478667 CAGTCAAAATCACGTTATTAGCAAGAC 59.521 37.037 0.00 1.27 0.00 3.01
3132 3254 1.380302 GACAGCAAGACCCACCCAT 59.620 57.895 0.00 0.00 0.00 4.00
3133 3255 0.251341 GACAGCAAGACCCACCCATT 60.251 55.000 0.00 0.00 0.00 3.16
3149 3271 3.260632 ACCCATTGGTTGATAGCAAAACC 59.739 43.478 0.00 0.00 44.75 3.27
3176 3298 5.124457 CCCAAGAGTTTATTCAGATGGTGTG 59.876 44.000 0.00 0.00 0.00 3.82
3177 3299 5.707298 CCAAGAGTTTATTCAGATGGTGTGT 59.293 40.000 0.00 0.00 0.00 3.72
3178 3300 6.348786 CCAAGAGTTTATTCAGATGGTGTGTG 60.349 42.308 0.00 0.00 0.00 3.82
3179 3301 5.869579 AGAGTTTATTCAGATGGTGTGTGT 58.130 37.500 0.00 0.00 0.00 3.72
3180 3302 5.934625 AGAGTTTATTCAGATGGTGTGTGTC 59.065 40.000 0.00 0.00 0.00 3.67
3181 3303 4.690748 AGTTTATTCAGATGGTGTGTGTCG 59.309 41.667 0.00 0.00 0.00 4.35
3186 3309 2.058798 CAGATGGTGTGTGTCGTGTAC 58.941 52.381 0.00 0.00 0.00 2.90
3188 3311 2.030185 AGATGGTGTGTGTCGTGTACTC 60.030 50.000 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
243 297 0.325203 AGGCAGAGGAGAAGGAGACC 60.325 60.000 0.00 0.00 0.00 3.85
647 733 5.583061 TCTTTTAAGTGCGTTTCTGACAGAA 59.417 36.000 13.99 13.99 31.28 3.02
727 813 3.761311 TTTTGTGCGAAAAACTACCGT 57.239 38.095 0.00 0.00 0.00 4.83
811 897 5.858381 AGTGAAGCAGTGAGAGTGATTTAA 58.142 37.500 0.00 0.00 25.65 1.52
812 898 5.474578 AGTGAAGCAGTGAGAGTGATTTA 57.525 39.130 0.00 0.00 25.65 1.40
813 899 4.348863 AGTGAAGCAGTGAGAGTGATTT 57.651 40.909 0.00 0.00 25.65 2.17
814 900 4.063689 CAAGTGAAGCAGTGAGAGTGATT 58.936 43.478 0.00 0.00 28.56 2.57
815 901 3.661944 CAAGTGAAGCAGTGAGAGTGAT 58.338 45.455 0.00 0.00 0.00 3.06
816 902 2.804572 GCAAGTGAAGCAGTGAGAGTGA 60.805 50.000 0.00 0.00 0.00 3.41
817 903 1.530293 GCAAGTGAAGCAGTGAGAGTG 59.470 52.381 0.00 0.00 0.00 3.51
818 904 1.542108 GGCAAGTGAAGCAGTGAGAGT 60.542 52.381 0.00 0.00 0.00 3.24
819 905 1.155042 GGCAAGTGAAGCAGTGAGAG 58.845 55.000 0.00 0.00 0.00 3.20
820 906 0.469494 TGGCAAGTGAAGCAGTGAGA 59.531 50.000 0.00 0.00 0.00 3.27
821 907 0.873054 CTGGCAAGTGAAGCAGTGAG 59.127 55.000 0.00 0.00 0.00 3.51
822 908 0.469494 TCTGGCAAGTGAAGCAGTGA 59.531 50.000 0.00 0.00 0.00 3.41
823 909 1.531423 ATCTGGCAAGTGAAGCAGTG 58.469 50.000 0.00 0.00 0.00 3.66
824 910 2.283145 AATCTGGCAAGTGAAGCAGT 57.717 45.000 0.00 0.00 0.00 4.40
825 911 4.157289 ACATAAATCTGGCAAGTGAAGCAG 59.843 41.667 0.00 0.00 0.00 4.24
826 912 4.081406 ACATAAATCTGGCAAGTGAAGCA 58.919 39.130 0.00 0.00 0.00 3.91
827 913 4.708726 ACATAAATCTGGCAAGTGAAGC 57.291 40.909 0.00 0.00 0.00 3.86
828 914 5.727791 GCGTACATAAATCTGGCAAGTGAAG 60.728 44.000 0.00 0.00 0.00 3.02
829 915 4.094294 GCGTACATAAATCTGGCAAGTGAA 59.906 41.667 0.00 0.00 0.00 3.18
830 916 3.621268 GCGTACATAAATCTGGCAAGTGA 59.379 43.478 0.00 0.00 0.00 3.41
831 917 3.623060 AGCGTACATAAATCTGGCAAGTG 59.377 43.478 0.00 0.00 0.00 3.16
832 918 3.873910 AGCGTACATAAATCTGGCAAGT 58.126 40.909 0.00 0.00 0.00 3.16
833 919 4.332543 TCAAGCGTACATAAATCTGGCAAG 59.667 41.667 0.00 0.00 0.00 4.01
834 920 4.257731 TCAAGCGTACATAAATCTGGCAA 58.742 39.130 0.00 0.00 0.00 4.52
835 921 3.867857 TCAAGCGTACATAAATCTGGCA 58.132 40.909 0.00 0.00 0.00 4.92
836 922 3.248602 CCTCAAGCGTACATAAATCTGGC 59.751 47.826 0.00 0.00 0.00 4.85
837 923 3.809832 CCCTCAAGCGTACATAAATCTGG 59.190 47.826 0.00 0.00 0.00 3.86
838 924 4.693283 TCCCTCAAGCGTACATAAATCTG 58.307 43.478 0.00 0.00 0.00 2.90
839 925 5.552870 ATCCCTCAAGCGTACATAAATCT 57.447 39.130 0.00 0.00 0.00 2.40
840 926 5.527582 ACAATCCCTCAAGCGTACATAAATC 59.472 40.000 0.00 0.00 0.00 2.17
841 927 5.437060 ACAATCCCTCAAGCGTACATAAAT 58.563 37.500 0.00 0.00 0.00 1.40
842 928 4.839121 ACAATCCCTCAAGCGTACATAAA 58.161 39.130 0.00 0.00 0.00 1.40
843 929 4.161565 AGACAATCCCTCAAGCGTACATAA 59.838 41.667 0.00 0.00 0.00 1.90
844 930 3.704566 AGACAATCCCTCAAGCGTACATA 59.295 43.478 0.00 0.00 0.00 2.29
845 931 2.501723 AGACAATCCCTCAAGCGTACAT 59.498 45.455 0.00 0.00 0.00 2.29
846 932 1.899814 AGACAATCCCTCAAGCGTACA 59.100 47.619 0.00 0.00 0.00 2.90
847 933 2.674796 AGACAATCCCTCAAGCGTAC 57.325 50.000 0.00 0.00 0.00 3.67
848 934 2.093658 GGAAGACAATCCCTCAAGCGTA 60.094 50.000 0.00 0.00 33.05 4.42
849 935 1.339151 GGAAGACAATCCCTCAAGCGT 60.339 52.381 0.00 0.00 33.05 5.07
850 936 1.373570 GGAAGACAATCCCTCAAGCG 58.626 55.000 0.00 0.00 33.05 4.68
858 944 3.010420 GTTGCAGTAGGGAAGACAATCC 58.990 50.000 0.00 0.00 38.86 3.01
859 945 3.944087 AGTTGCAGTAGGGAAGACAATC 58.056 45.455 0.00 0.00 0.00 2.67
860 946 4.373156 AAGTTGCAGTAGGGAAGACAAT 57.627 40.909 0.00 0.00 0.00 2.71
861 947 3.857157 AAGTTGCAGTAGGGAAGACAA 57.143 42.857 0.00 0.00 0.00 3.18
862 948 3.496160 GGAAAGTTGCAGTAGGGAAGACA 60.496 47.826 0.00 0.00 0.00 3.41
863 949 3.075148 GGAAAGTTGCAGTAGGGAAGAC 58.925 50.000 0.00 0.00 0.00 3.01
864 950 2.708861 TGGAAAGTTGCAGTAGGGAAGA 59.291 45.455 0.00 0.00 0.00 2.87
865 951 3.077359 CTGGAAAGTTGCAGTAGGGAAG 58.923 50.000 4.52 0.00 41.12 3.46
866 952 2.814097 GCTGGAAAGTTGCAGTAGGGAA 60.814 50.000 13.23 0.00 46.76 3.97
867 953 1.271379 GCTGGAAAGTTGCAGTAGGGA 60.271 52.381 13.23 0.00 46.76 4.20
868 954 1.168714 GCTGGAAAGTTGCAGTAGGG 58.831 55.000 13.23 0.00 46.76 3.53
869 955 0.798776 CGCTGGAAAGTTGCAGTAGG 59.201 55.000 13.23 1.43 46.76 3.18
870 956 1.512926 ACGCTGGAAAGTTGCAGTAG 58.487 50.000 13.23 10.33 46.76 2.57
871 957 2.823924 TACGCTGGAAAGTTGCAGTA 57.176 45.000 13.23 0.00 46.76 2.74
872 958 1.806542 CATACGCTGGAAAGTTGCAGT 59.193 47.619 13.23 0.00 46.76 4.40
874 960 1.890876 ACATACGCTGGAAAGTTGCA 58.109 45.000 0.00 0.00 0.00 4.08
875 961 2.979813 CAAACATACGCTGGAAAGTTGC 59.020 45.455 0.00 0.00 0.00 4.17
876 962 4.481930 TCAAACATACGCTGGAAAGTTG 57.518 40.909 0.00 0.00 0.00 3.16
877 963 5.240623 TCAATCAAACATACGCTGGAAAGTT 59.759 36.000 0.00 0.00 0.00 2.66
878 964 4.759693 TCAATCAAACATACGCTGGAAAGT 59.240 37.500 0.00 0.00 0.00 2.66
879 965 5.295431 TCAATCAAACATACGCTGGAAAG 57.705 39.130 0.00 0.00 0.00 2.62
880 966 5.182950 ACATCAATCAAACATACGCTGGAAA 59.817 36.000 0.00 0.00 0.00 3.13
881 967 4.699735 ACATCAATCAAACATACGCTGGAA 59.300 37.500 0.00 0.00 0.00 3.53
882 968 4.260985 ACATCAATCAAACATACGCTGGA 58.739 39.130 0.00 0.00 0.00 3.86
883 969 4.621068 ACATCAATCAAACATACGCTGG 57.379 40.909 0.00 0.00 0.00 4.85
884 970 5.030295 GGAACATCAATCAAACATACGCTG 58.970 41.667 0.00 0.00 0.00 5.18
885 971 4.699735 TGGAACATCAATCAAACATACGCT 59.300 37.500 0.00 0.00 0.00 5.07
886 972 4.980590 TGGAACATCAATCAAACATACGC 58.019 39.130 0.00 0.00 0.00 4.42
887 973 7.594758 AGTTTTGGAACATCAATCAAACATACG 59.405 33.333 0.00 0.00 39.30 3.06
888 974 8.816640 AGTTTTGGAACATCAATCAAACATAC 57.183 30.769 0.00 0.00 39.30 2.39
889 975 8.637099 TGAGTTTTGGAACATCAATCAAACATA 58.363 29.630 0.00 0.00 39.30 2.29
890 976 7.439056 GTGAGTTTTGGAACATCAATCAAACAT 59.561 33.333 0.00 0.00 39.30 2.71
891 977 6.756074 GTGAGTTTTGGAACATCAATCAAACA 59.244 34.615 0.00 0.00 39.30 2.83
892 978 6.200854 GGTGAGTTTTGGAACATCAATCAAAC 59.799 38.462 0.00 0.00 39.30 2.93
893 979 6.279882 GGTGAGTTTTGGAACATCAATCAAA 58.720 36.000 0.00 0.00 39.30 2.69
894 980 5.221422 GGGTGAGTTTTGGAACATCAATCAA 60.221 40.000 0.00 0.00 39.30 2.57
895 981 4.280677 GGGTGAGTTTTGGAACATCAATCA 59.719 41.667 0.00 0.00 39.30 2.57
896 982 4.524328 AGGGTGAGTTTTGGAACATCAATC 59.476 41.667 0.00 0.00 39.30 2.67
897 983 4.482990 AGGGTGAGTTTTGGAACATCAAT 58.517 39.130 0.00 0.00 39.30 2.57
898 984 3.888930 GAGGGTGAGTTTTGGAACATCAA 59.111 43.478 0.00 0.00 39.30 2.57
899 985 3.486383 GAGGGTGAGTTTTGGAACATCA 58.514 45.455 0.00 0.00 39.30 3.07
900 986 2.484264 CGAGGGTGAGTTTTGGAACATC 59.516 50.000 0.00 0.00 39.30 3.06
901 987 2.105821 TCGAGGGTGAGTTTTGGAACAT 59.894 45.455 0.00 0.00 39.30 2.71
902 988 1.487142 TCGAGGGTGAGTTTTGGAACA 59.513 47.619 0.00 0.00 38.26 3.18
903 989 2.143925 CTCGAGGGTGAGTTTTGGAAC 58.856 52.381 3.91 0.00 35.97 3.62
904 990 1.766496 ACTCGAGGGTGAGTTTTGGAA 59.234 47.619 18.41 0.00 46.85 3.53
905 991 1.070134 CACTCGAGGGTGAGTTTTGGA 59.930 52.381 18.41 0.00 46.85 3.53
906 992 1.202651 ACACTCGAGGGTGAGTTTTGG 60.203 52.381 22.02 0.00 46.85 3.28
907 993 1.867233 CACACTCGAGGGTGAGTTTTG 59.133 52.381 38.84 16.32 46.85 2.44
908 994 1.485066 ACACACTCGAGGGTGAGTTTT 59.515 47.619 45.42 25.71 46.85 2.43
909 995 1.068741 GACACACTCGAGGGTGAGTTT 59.931 52.381 45.42 28.37 46.85 2.66
910 996 0.674534 GACACACTCGAGGGTGAGTT 59.325 55.000 45.42 28.73 46.85 3.01
912 998 0.523966 GAGACACACTCGAGGGTGAG 59.476 60.000 45.42 26.44 40.13 3.51
913 999 2.642425 GAGACACACTCGAGGGTGA 58.358 57.895 45.42 0.00 40.13 4.02
924 1010 2.223735 GGACTCGAAACTGTGAGACACA 60.224 50.000 4.56 4.56 42.45 3.72
925 1011 2.223735 TGGACTCGAAACTGTGAGACAC 60.224 50.000 1.16 0.00 36.11 3.67
926 1012 2.028876 TGGACTCGAAACTGTGAGACA 58.971 47.619 1.16 0.00 36.11 3.41
927 1013 2.667137 CTGGACTCGAAACTGTGAGAC 58.333 52.381 1.16 0.00 36.11 3.36
928 1014 1.000163 GCTGGACTCGAAACTGTGAGA 60.000 52.381 1.16 0.00 36.11 3.27
929 1015 1.423395 GCTGGACTCGAAACTGTGAG 58.577 55.000 0.00 0.00 38.21 3.51
930 1016 0.318699 CGCTGGACTCGAAACTGTGA 60.319 55.000 0.00 0.00 0.00 3.58
931 1017 1.891060 GCGCTGGACTCGAAACTGTG 61.891 60.000 0.00 0.00 0.00 3.66
932 1018 1.664965 GCGCTGGACTCGAAACTGT 60.665 57.895 0.00 0.00 0.00 3.55
933 1019 1.664649 TGCGCTGGACTCGAAACTG 60.665 57.895 9.73 0.00 0.00 3.16
934 1020 1.664965 GTGCGCTGGACTCGAAACT 60.665 57.895 9.73 0.00 0.00 2.66
935 1021 1.954146 TGTGCGCTGGACTCGAAAC 60.954 57.895 9.73 0.00 0.00 2.78
936 1022 1.954146 GTGTGCGCTGGACTCGAAA 60.954 57.895 9.73 0.00 0.00 3.46
937 1023 2.355837 GTGTGCGCTGGACTCGAA 60.356 61.111 9.73 0.00 0.00 3.71
938 1024 3.268965 GAGTGTGCGCTGGACTCGA 62.269 63.158 9.73 0.00 0.00 4.04
939 1025 2.807045 GAGTGTGCGCTGGACTCG 60.807 66.667 9.73 0.00 0.00 4.18
940 1026 0.671781 ATTGAGTGTGCGCTGGACTC 60.672 55.000 20.38 20.38 37.27 3.36
941 1027 0.952497 CATTGAGTGTGCGCTGGACT 60.952 55.000 9.73 7.66 0.00 3.85
942 1028 1.230635 ACATTGAGTGTGCGCTGGAC 61.231 55.000 9.73 0.00 40.28 4.02
943 1029 0.534877 AACATTGAGTGTGCGCTGGA 60.535 50.000 9.73 0.00 41.14 3.86
944 1030 1.129251 CTAACATTGAGTGTGCGCTGG 59.871 52.381 9.73 0.00 41.14 4.85
945 1031 1.464687 GCTAACATTGAGTGTGCGCTG 60.465 52.381 9.73 0.00 41.14 5.18
946 1032 0.798776 GCTAACATTGAGTGTGCGCT 59.201 50.000 9.73 0.00 41.14 5.92
947 1033 0.516877 TGCTAACATTGAGTGTGCGC 59.483 50.000 0.00 0.00 41.14 6.09
948 1034 1.800586 ACTGCTAACATTGAGTGTGCG 59.199 47.619 0.00 0.00 41.14 5.34
949 1035 2.160417 GGACTGCTAACATTGAGTGTGC 59.840 50.000 0.00 0.00 41.14 4.57
950 1036 3.434641 CAGGACTGCTAACATTGAGTGTG 59.565 47.826 0.00 0.00 41.14 3.82
951 1037 3.071602 ACAGGACTGCTAACATTGAGTGT 59.928 43.478 0.00 0.00 44.84 3.55
952 1038 3.668447 ACAGGACTGCTAACATTGAGTG 58.332 45.455 0.00 0.00 0.00 3.51
953 1039 5.483685 TTACAGGACTGCTAACATTGAGT 57.516 39.130 0.00 0.00 0.00 3.41
954 1040 7.223582 CAGTATTACAGGACTGCTAACATTGAG 59.776 40.741 0.00 0.00 36.91 3.02
955 1041 7.041721 CAGTATTACAGGACTGCTAACATTGA 58.958 38.462 0.00 0.00 36.91 2.57
956 1042 7.041721 TCAGTATTACAGGACTGCTAACATTG 58.958 38.462 0.00 0.00 42.35 2.82
957 1043 7.182817 TCAGTATTACAGGACTGCTAACATT 57.817 36.000 0.00 0.00 42.35 2.71
958 1044 6.791867 TCAGTATTACAGGACTGCTAACAT 57.208 37.500 0.00 0.00 42.35 2.71
959 1045 6.014925 TGTTCAGTATTACAGGACTGCTAACA 60.015 38.462 0.00 5.62 42.35 2.41
960 1046 6.310711 GTGTTCAGTATTACAGGACTGCTAAC 59.689 42.308 0.00 0.00 42.35 2.34
961 1047 6.395629 GTGTTCAGTATTACAGGACTGCTAA 58.604 40.000 0.00 0.00 42.35 3.09
962 1048 5.105473 GGTGTTCAGTATTACAGGACTGCTA 60.105 44.000 0.00 0.00 42.35 3.49
963 1049 4.322801 GGTGTTCAGTATTACAGGACTGCT 60.323 45.833 0.00 0.00 42.35 4.24
964 1050 3.933332 GGTGTTCAGTATTACAGGACTGC 59.067 47.826 0.00 0.00 42.35 4.40
965 1051 5.147330 TGGTGTTCAGTATTACAGGACTG 57.853 43.478 0.00 0.00 43.70 3.51
966 1052 5.734720 CATGGTGTTCAGTATTACAGGACT 58.265 41.667 0.07 0.00 0.00 3.85
967 1053 4.332819 GCATGGTGTTCAGTATTACAGGAC 59.667 45.833 0.00 0.00 0.00 3.85
968 1054 4.225042 AGCATGGTGTTCAGTATTACAGGA 59.775 41.667 0.00 0.00 0.00 3.86
969 1055 4.517285 AGCATGGTGTTCAGTATTACAGG 58.483 43.478 0.00 0.00 0.00 4.00
970 1056 5.423015 AGAGCATGGTGTTCAGTATTACAG 58.577 41.667 0.00 0.00 29.40 2.74
971 1057 5.419542 GAGAGCATGGTGTTCAGTATTACA 58.580 41.667 0.00 0.00 29.40 2.41
972 1058 4.504461 CGAGAGCATGGTGTTCAGTATTAC 59.496 45.833 0.00 0.00 29.40 1.89
973 1059 4.441495 CCGAGAGCATGGTGTTCAGTATTA 60.441 45.833 0.00 0.00 29.40 0.98
974 1060 3.525537 CGAGAGCATGGTGTTCAGTATT 58.474 45.455 0.00 0.00 29.40 1.89
975 1061 2.159043 CCGAGAGCATGGTGTTCAGTAT 60.159 50.000 0.00 0.00 29.40 2.12
976 1062 1.204704 CCGAGAGCATGGTGTTCAGTA 59.795 52.381 0.00 0.00 29.40 2.74
977 1063 0.036952 CCGAGAGCATGGTGTTCAGT 60.037 55.000 0.00 0.00 29.40 3.41
978 1064 1.364626 GCCGAGAGCATGGTGTTCAG 61.365 60.000 0.00 0.00 42.97 3.02
979 1065 1.375908 GCCGAGAGCATGGTGTTCA 60.376 57.895 0.00 0.00 42.97 3.18
980 1066 3.490890 GCCGAGAGCATGGTGTTC 58.509 61.111 0.00 0.00 42.97 3.18
985 1071 2.321263 ACCATCAGCCGAGAGCATGG 62.321 60.000 0.00 3.26 46.05 3.66
989 1075 1.067250 GAGACCATCAGCCGAGAGC 59.933 63.158 0.00 0.00 44.25 4.09
990 1076 0.102120 GTGAGACCATCAGCCGAGAG 59.898 60.000 0.00 0.00 39.07 3.20
991 1077 0.611896 TGTGAGACCATCAGCCGAGA 60.612 55.000 0.00 0.00 39.07 4.04
992 1078 0.179116 CTGTGAGACCATCAGCCGAG 60.179 60.000 0.00 0.00 39.07 4.63
993 1079 0.900182 ACTGTGAGACCATCAGCCGA 60.900 55.000 0.00 0.00 39.07 5.54
994 1080 0.036952 AACTGTGAGACCATCAGCCG 60.037 55.000 0.00 0.00 39.07 5.52
995 1081 2.028112 TGTAACTGTGAGACCATCAGCC 60.028 50.000 0.00 0.00 39.07 4.85
996 1082 3.319137 TGTAACTGTGAGACCATCAGC 57.681 47.619 0.00 0.00 39.07 4.26
997 1083 4.631131 TGTTGTAACTGTGAGACCATCAG 58.369 43.478 0.00 0.00 39.07 2.90
998 1084 4.681074 TGTTGTAACTGTGAGACCATCA 57.319 40.909 0.00 0.00 34.79 3.07
999 1085 5.700832 TGATTGTTGTAACTGTGAGACCATC 59.299 40.000 0.00 0.00 0.00 3.51
1000 1086 5.470098 GTGATTGTTGTAACTGTGAGACCAT 59.530 40.000 0.00 0.00 0.00 3.55
1001 1087 4.814234 GTGATTGTTGTAACTGTGAGACCA 59.186 41.667 0.00 0.00 0.00 4.02
1002 1088 5.057149 AGTGATTGTTGTAACTGTGAGACC 58.943 41.667 0.00 0.00 0.00 3.85
1003 1089 5.986135 AGAGTGATTGTTGTAACTGTGAGAC 59.014 40.000 0.00 0.00 0.00 3.36
1004 1090 6.161855 AGAGTGATTGTTGTAACTGTGAGA 57.838 37.500 0.00 0.00 0.00 3.27
1005 1091 6.851222 AAGAGTGATTGTTGTAACTGTGAG 57.149 37.500 0.00 0.00 0.00 3.51
1006 1092 7.269316 TGTAAGAGTGATTGTTGTAACTGTGA 58.731 34.615 0.00 0.00 0.00 3.58
1007 1093 7.477144 TGTAAGAGTGATTGTTGTAACTGTG 57.523 36.000 0.00 0.00 0.00 3.66
1008 1094 7.985184 TCTTGTAAGAGTGATTGTTGTAACTGT 59.015 33.333 0.00 0.00 0.00 3.55
1009 1095 8.365399 TCTTGTAAGAGTGATTGTTGTAACTG 57.635 34.615 0.00 0.00 0.00 3.16
1012 1098 9.990360 TGTATCTTGTAAGAGTGATTGTTGTAA 57.010 29.630 0.51 0.00 38.66 2.41
1013 1099 9.990360 TTGTATCTTGTAAGAGTGATTGTTGTA 57.010 29.630 0.51 0.00 38.66 2.41
1014 1100 8.902540 TTGTATCTTGTAAGAGTGATTGTTGT 57.097 30.769 0.51 0.00 38.66 3.32
1015 1101 8.446273 CCTTGTATCTTGTAAGAGTGATTGTTG 58.554 37.037 0.51 0.00 38.66 3.33
1016 1102 8.375506 TCCTTGTATCTTGTAAGAGTGATTGTT 58.624 33.333 0.51 0.00 38.66 2.83
1017 1103 7.907389 TCCTTGTATCTTGTAAGAGTGATTGT 58.093 34.615 0.51 0.00 38.66 2.71
1018 1104 8.660373 GTTCCTTGTATCTTGTAAGAGTGATTG 58.340 37.037 0.51 0.00 38.66 2.67
1019 1105 7.824779 GGTTCCTTGTATCTTGTAAGAGTGATT 59.175 37.037 0.51 0.00 38.66 2.57
1020 1106 7.038302 TGGTTCCTTGTATCTTGTAAGAGTGAT 60.038 37.037 0.51 0.00 38.66 3.06
1021 1107 6.269077 TGGTTCCTTGTATCTTGTAAGAGTGA 59.731 38.462 0.51 0.00 38.66 3.41
1022 1108 6.464222 TGGTTCCTTGTATCTTGTAAGAGTG 58.536 40.000 0.51 0.00 38.66 3.51
1023 1109 6.681729 TGGTTCCTTGTATCTTGTAAGAGT 57.318 37.500 0.51 0.00 38.66 3.24
1024 1110 7.824289 TGAATGGTTCCTTGTATCTTGTAAGAG 59.176 37.037 0.51 0.00 38.66 2.85
1025 1111 7.685481 TGAATGGTTCCTTGTATCTTGTAAGA 58.315 34.615 0.00 0.00 39.78 2.10
1026 1112 7.921786 TGAATGGTTCCTTGTATCTTGTAAG 57.078 36.000 0.00 0.00 0.00 2.34
1027 1113 8.877864 AATGAATGGTTCCTTGTATCTTGTAA 57.122 30.769 0.00 0.00 0.00 2.41
1028 1114 8.877864 AAATGAATGGTTCCTTGTATCTTGTA 57.122 30.769 0.00 0.00 0.00 2.41
1029 1115 7.451255 TGAAATGAATGGTTCCTTGTATCTTGT 59.549 33.333 0.00 0.00 0.00 3.16
1030 1116 7.829725 TGAAATGAATGGTTCCTTGTATCTTG 58.170 34.615 0.00 0.00 0.00 3.02
1031 1117 8.599624 ATGAAATGAATGGTTCCTTGTATCTT 57.400 30.769 0.00 0.00 0.00 2.40
1032 1118 8.599624 AATGAAATGAATGGTTCCTTGTATCT 57.400 30.769 0.00 0.00 0.00 1.98
1033 1119 8.469200 TGAATGAAATGAATGGTTCCTTGTATC 58.531 33.333 0.00 0.00 0.00 2.24
1034 1120 8.253113 GTGAATGAAATGAATGGTTCCTTGTAT 58.747 33.333 0.00 0.00 0.00 2.29
1035 1121 7.451255 AGTGAATGAAATGAATGGTTCCTTGTA 59.549 33.333 0.00 0.00 0.00 2.41
1036 1122 6.268387 AGTGAATGAAATGAATGGTTCCTTGT 59.732 34.615 0.00 0.00 0.00 3.16
1037 1123 6.694447 AGTGAATGAAATGAATGGTTCCTTG 58.306 36.000 0.00 0.00 0.00 3.61
1038 1124 6.923199 AGTGAATGAAATGAATGGTTCCTT 57.077 33.333 0.00 0.00 0.00 3.36
1039 1125 6.723052 AGAAGTGAATGAAATGAATGGTTCCT 59.277 34.615 0.00 0.00 0.00 3.36
1040 1126 6.810182 CAGAAGTGAATGAAATGAATGGTTCC 59.190 38.462 0.00 0.00 0.00 3.62
1041 1127 7.596494 TCAGAAGTGAATGAAATGAATGGTTC 58.404 34.615 0.00 0.00 0.00 3.62
1042 1128 7.528996 TCAGAAGTGAATGAAATGAATGGTT 57.471 32.000 0.00 0.00 0.00 3.67
1043 1129 7.528996 TTCAGAAGTGAATGAAATGAATGGT 57.471 32.000 0.00 0.00 37.79 3.55
1044 1130 6.530534 GCTTCAGAAGTGAATGAAATGAATGG 59.469 38.462 11.94 0.00 41.96 3.16
1045 1131 7.088272 TGCTTCAGAAGTGAATGAAATGAATG 58.912 34.615 11.94 0.00 41.96 2.67
1046 1132 7.223260 TGCTTCAGAAGTGAATGAAATGAAT 57.777 32.000 11.94 0.00 41.96 2.57
1047 1133 6.638096 TGCTTCAGAAGTGAATGAAATGAA 57.362 33.333 11.94 0.00 41.96 2.57
1048 1134 5.335426 GCTGCTTCAGAAGTGAATGAAATGA 60.335 40.000 11.94 0.00 41.96 2.57
1049 1135 4.857588 GCTGCTTCAGAAGTGAATGAAATG 59.142 41.667 11.94 0.00 41.96 2.32
1050 1136 4.765856 AGCTGCTTCAGAAGTGAATGAAAT 59.234 37.500 11.94 0.00 41.96 2.17
1051 1137 4.023450 CAGCTGCTTCAGAAGTGAATGAAA 60.023 41.667 11.94 0.00 41.96 2.69
1052 1138 3.501062 CAGCTGCTTCAGAAGTGAATGAA 59.499 43.478 11.94 0.00 41.96 2.57
1053 1139 3.072211 CAGCTGCTTCAGAAGTGAATGA 58.928 45.455 11.94 0.00 41.96 2.57
1060 1146 2.110901 ATCACCAGCTGCTTCAGAAG 57.889 50.000 8.66 5.72 32.44 2.85
1258 1344 6.291377 TGCATGAAGAAAGAGTAAGTTGACT 58.709 36.000 0.00 0.00 0.00 3.41
1311 1397 0.322816 GTGAAGCCAGGCCATCAAGA 60.323 55.000 17.10 0.00 29.25 3.02
1370 1456 5.073691 TGGAGGATCTCTTTTGAAGGAAGTT 59.926 40.000 0.00 0.00 33.73 2.66
1530 1616 5.022122 TCAAGGGATAATGGCAAACATTCA 58.978 37.500 0.00 0.00 46.67 2.57
1554 1640 5.065218 CACGCAATTCTTTATAGTGAGGCTT 59.935 40.000 0.00 0.00 0.00 4.35
1605 1691 6.014755 TGTGAATATTCTTCATTTGTGGCCAA 60.015 34.615 7.24 0.00 0.00 4.52
1614 1700 9.976511 CAATTGGCTATGTGAATATTCTTCATT 57.023 29.630 21.92 12.35 0.00 2.57
1651 1737 7.225538 GGTGAGACTATCAATAGACAAACATGG 59.774 40.741 4.07 0.00 40.43 3.66
1663 1749 8.762645 TGATTTAACAGAGGTGAGACTATCAAT 58.237 33.333 0.00 0.00 40.43 2.57
1667 1753 7.617723 AGAGTGATTTAACAGAGGTGAGACTAT 59.382 37.037 0.00 0.00 0.00 2.12
1735 1821 1.101331 GAAAGATGCAGCAGGGAAGG 58.899 55.000 4.07 0.00 0.00 3.46
1749 1835 3.695830 ATCAAACCTACGCTGGAAAGA 57.304 42.857 1.04 0.00 0.00 2.52
1802 1888 0.388134 GCGCTGGACTCGAAACTGTA 60.388 55.000 0.00 0.00 0.00 2.74
1827 1913 6.379988 TGAGTATTACTGGACTGCTAACATCA 59.620 38.462 0.00 0.00 0.00 3.07
1842 1928 5.665459 GAGAGCATGGTGTTGAGTATTACT 58.335 41.667 0.00 0.00 0.00 2.24
2009 2101 3.929610 CGTCTTCAGATTGGAGAAAGACC 59.070 47.826 7.70 0.00 0.00 3.85
2445 2566 4.514066 GCTGTCTTCTAGAGTAGGAGTAGC 59.486 50.000 0.00 0.00 36.41 3.58
2446 2567 5.061179 GGCTGTCTTCTAGAGTAGGAGTAG 58.939 50.000 0.00 0.00 32.96 2.57
2447 2568 4.722781 AGGCTGTCTTCTAGAGTAGGAGTA 59.277 45.833 0.00 0.00 32.96 2.59
2448 2569 3.526019 AGGCTGTCTTCTAGAGTAGGAGT 59.474 47.826 0.00 0.00 32.96 3.85
2449 2570 4.164843 AGGCTGTCTTCTAGAGTAGGAG 57.835 50.000 0.00 0.00 32.37 3.69
2450 2571 4.594675 AAGGCTGTCTTCTAGAGTAGGA 57.405 45.455 0.00 0.00 0.00 2.94
2451 2572 4.464597 ACAAAGGCTGTCTTCTAGAGTAGG 59.535 45.833 0.00 0.00 33.94 3.18
2452 2573 5.652994 ACAAAGGCTGTCTTCTAGAGTAG 57.347 43.478 0.00 0.00 33.94 2.57
2453 2574 6.890268 TCATACAAAGGCTGTCTTCTAGAGTA 59.110 38.462 0.00 0.00 39.64 2.59
2454 2575 5.717178 TCATACAAAGGCTGTCTTCTAGAGT 59.283 40.000 0.00 0.00 39.64 3.24
2455 2576 6.214191 TCATACAAAGGCTGTCTTCTAGAG 57.786 41.667 0.00 0.00 39.64 2.43
2456 2577 6.798427 ATCATACAAAGGCTGTCTTCTAGA 57.202 37.500 0.00 0.00 39.64 2.43
2457 2578 6.644592 GCTATCATACAAAGGCTGTCTTCTAG 59.355 42.308 0.00 0.00 39.64 2.43
2458 2579 6.463049 GGCTATCATACAAAGGCTGTCTTCTA 60.463 42.308 0.00 0.00 39.64 2.10
2459 2580 5.363939 GCTATCATACAAAGGCTGTCTTCT 58.636 41.667 0.00 0.00 39.64 2.85
2460 2581 4.513318 GGCTATCATACAAAGGCTGTCTTC 59.487 45.833 0.00 0.00 39.64 2.87
2461 2582 4.455606 GGCTATCATACAAAGGCTGTCTT 58.544 43.478 0.00 0.00 39.64 3.01
2462 2583 3.493350 CGGCTATCATACAAAGGCTGTCT 60.493 47.826 0.00 0.00 39.64 3.41
2463 2584 2.802816 CGGCTATCATACAAAGGCTGTC 59.197 50.000 0.00 0.00 39.64 3.51
2464 2585 2.170607 ACGGCTATCATACAAAGGCTGT 59.829 45.455 0.00 0.00 42.47 4.40
2465 2586 2.545526 CACGGCTATCATACAAAGGCTG 59.454 50.000 0.00 0.00 33.89 4.85
2466 2587 2.838736 CACGGCTATCATACAAAGGCT 58.161 47.619 0.00 0.00 33.89 4.58
2467 2588 1.264288 GCACGGCTATCATACAAAGGC 59.736 52.381 0.00 0.00 0.00 4.35
2468 2589 2.838736 AGCACGGCTATCATACAAAGG 58.161 47.619 0.00 0.00 36.99 3.11
2469 2590 4.445718 CAGTAGCACGGCTATCATACAAAG 59.554 45.833 8.54 0.00 43.30 2.77
2470 2591 4.368315 CAGTAGCACGGCTATCATACAAA 58.632 43.478 8.54 0.00 43.30 2.83
2471 2592 3.798889 GCAGTAGCACGGCTATCATACAA 60.799 47.826 8.54 0.00 43.30 2.41
2472 2593 2.288213 GCAGTAGCACGGCTATCATACA 60.288 50.000 8.54 0.00 43.30 2.29
2473 2594 2.329379 GCAGTAGCACGGCTATCATAC 58.671 52.381 8.54 0.00 43.30 2.39
2474 2595 2.724977 GCAGTAGCACGGCTATCATA 57.275 50.000 8.54 0.00 43.30 2.15
2475 2596 3.595691 GCAGTAGCACGGCTATCAT 57.404 52.632 8.54 0.00 43.30 2.45
2481 2602 1.002251 CTAGAGTAGCAGTAGCACGGC 60.002 57.143 3.90 3.90 45.49 5.68
2492 2613 4.442192 ACAAAGGCTGTATGCTAGAGTAGC 60.442 45.833 0.00 0.00 43.93 3.58
2525 2646 0.102844 GCACCAGCAAAACAGAGCAA 59.897 50.000 0.00 0.00 41.58 3.91
2532 2653 0.740737 ACTGACAGCACCAGCAAAAC 59.259 50.000 1.25 0.00 45.49 2.43
2539 2660 2.158769 AGACATTTCACTGACAGCACCA 60.159 45.455 1.25 0.00 0.00 4.17
2559 2680 3.616956 TTTGCTCCAGACTGGTCATAG 57.383 47.619 21.06 11.99 39.03 2.23
2622 2743 1.654954 GAGCCATCCAGCTTGTGCAG 61.655 60.000 0.00 0.00 45.15 4.41
2644 2765 4.136796 CAACACATTCCTGGAAAGAGTCA 58.863 43.478 17.77 0.00 0.00 3.41
2794 2915 4.202101 TGTGACAATTGTCCACATTGTTCC 60.202 41.667 30.66 7.25 44.15 3.62
2939 3060 2.686915 GCAGTCTTCATGGCATTAGCTT 59.313 45.455 0.00 0.00 41.70 3.74
2949 3070 2.867368 GAGATCAGCTGCAGTCTTCATG 59.133 50.000 16.64 5.34 0.00 3.07
3036 3157 6.803154 AGGTGAGTTTGTCTTGCTAATAAC 57.197 37.500 0.00 0.00 0.00 1.89
3039 3160 5.376625 TCAAGGTGAGTTTGTCTTGCTAAT 58.623 37.500 0.00 0.00 37.21 1.73
3132 3254 2.630580 GGTGGGTTTTGCTATCAACCAA 59.369 45.455 4.51 0.00 43.89 3.67
3133 3255 2.243810 GGTGGGTTTTGCTATCAACCA 58.756 47.619 4.51 0.00 43.89 3.67
3149 3271 4.641989 CCATCTGAATAAACTCTTGGGTGG 59.358 45.833 0.00 0.00 0.00 4.61
3176 3298 2.666069 GCTCTGTCTGAGTACACGACAC 60.666 54.545 11.58 3.06 44.41 3.67
3177 3299 1.535896 GCTCTGTCTGAGTACACGACA 59.464 52.381 13.72 13.72 44.41 4.35
3178 3300 1.135632 GGCTCTGTCTGAGTACACGAC 60.136 57.143 8.37 2.27 44.41 4.34
3179 3301 1.166129 GGCTCTGTCTGAGTACACGA 58.834 55.000 8.37 0.00 44.41 4.35
3180 3302 1.169577 AGGCTCTGTCTGAGTACACG 58.830 55.000 8.37 0.00 44.41 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.