AutoCloner

Multiple sequence alignment - TraesCS4A01G475800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G475800	chr4A	100.000	4182	0	0	1	4182	734576676	734580857	0.000000e+00	7723.0
1	TraesCS4A01G475800	chr4A	95.881	3375	107	12	1	3371	735759313	735762659	0.000000e+00	5433.0
2	TraesCS4A01G475800	chr4A	96.319	2554	88	4	1	2554	736868678	736871225	0.000000e+00	4191.0
3	TraesCS4A01G475800	chr4A	86.753	2710	332	14	1	2692	736140778	736143478	0.000000e+00	2990.0
4	TraesCS4A01G475800	chr4A	93.616	1958	125	0	658	2615	736038949	736040906	0.000000e+00	2924.0
5	TraesCS4A01G475800	chr4A	85.165	2703	342	32	1	2672	736803095	736805769	0.000000e+00	2715.0
6	TraesCS4A01G475800	chr4A	85.634	2311	283	29	384	2672	736459146	736456863	0.000000e+00	2383.0
7	TraesCS4A01G475800	chr4A	95.759	731	31	0	1968	2698	735520573	735519843	0.000000e+00	1179.0
8	TraesCS4A01G475800	chr4A	92.755	773	48	5	2887	3653	736049490	736050260	0.000000e+00	1110.0
9	TraesCS4A01G475800	chr4A	85.042	956	103	13	2715	3653	736143447	736144379	0.000000e+00	937.0
10	TraesCS4A01G475800	chr4A	93.932	412	21	3	2700	3109	735505598	735505189	1.650000e-173	619.0
11	TraesCS4A01G475800	chr4A	89.978	459	31	11	3101	3549	735491010	735490557	2.800000e-161	579.0
12	TraesCS4A01G475800	chr4A	92.289	415	19	3	1	414	735548857	735548455	1.010000e-160	577.0
13	TraesCS4A01G475800	chr4A	84.130	460	58	10	2757	3212	736805779	736806227	8.310000e-117	431.0
14	TraesCS4A01G475800	chr4A	87.360	356	34	7	3665	4015	736144436	736144785	8.420000e-107	398.0
15	TraesCS4A01G475800	chr4A	91.275	298	13	4	2609	2894	736046634	736046930	1.090000e-105	394.0
16	TraesCS4A01G475800	chr4A	86.744	347	36	6	3665	4007	736050317	736050657	1.100000e-100	377.0
17	TraesCS4A01G475800	chr4A	85.593	354	40	9	3673	4024	735489972	735489628	1.110000e-95	361.0
18	TraesCS4A01G475800	chr4A	87.586	145	17	1	4034	4178	735306926	735307069	2.590000e-37	167.0
19	TraesCS4A01G475800	chr7D	87.462	2975	346	11	5	2966	5656944	5653984	0.000000e+00	3402.0
20	TraesCS4A01G475800	chr7D	87.662	2707	311	6	4	2697	575928343	575925647	0.000000e+00	3127.0
21	TraesCS4A01G475800	chr7D	92.385	696	31	3	2959	3653	5652761	5652087	0.000000e+00	972.0
22	TraesCS4A01G475800	chr7D	87.572	523	56	4	2715	3228	575925683	575925161	7.740000e-167	597.0
23	TraesCS4A01G475800	chr7D	90.132	456	37	4	3203	3653	5435169	5434717	1.680000e-163	586.0
24	TraesCS4A01G475800	chr7D	85.037	401	29	6	3785	4182	5651846	5651474	3.050000e-101	379.0
25	TraesCS4A01G475800	chr7D	94.545	55	3	0	2715	2769	5654289	5654235	7.450000e-13	86.1
26	TraesCS4A01G475800	chr7A	86.357	2712	308	22	4	2697	666797745	666795078	0.000000e+00	2902.0
27	TraesCS4A01G475800	chr7A	86.767	529	57	8	2715	3232	666795114	666794588	1.010000e-160	577.0
28	TraesCS4A01G475800	chr5B	84.255	2623	383	19	1	2610	98511096	98513701	0.000000e+00	2529.0
29	TraesCS4A01G475800	chr5B	86.353	447	60	1	2792	3238	98513792	98514237	1.750000e-133	486.0
30	TraesCS4A01G475800	chr2D	83.235	2547	395	19	87	2614	637640550	637638017	0.000000e+00	2309.0
31	TraesCS4A01G475800	chr2D	81.497	481	81	6	2771	3246	637637916	637637439	5.070000e-104	388.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G475800	chr4A	734576676	734580857	4181	False	7723.000000	7723	100.00000	1	4182	1	chr4A.!!$F1	4181
1	TraesCS4A01G475800	chr4A	735759313	735762659	3346	False	5433.000000	5433	95.88100	1	3371	1	chr4A.!!$F3	3370
2	TraesCS4A01G475800	chr4A	736868678	736871225	2547	False	4191.000000	4191	96.31900	1	2554	1	chr4A.!!$F5	2553
3	TraesCS4A01G475800	chr4A	736038949	736040906	1957	False	2924.000000	2924	93.61600	658	2615	1	chr4A.!!$F4	1957
4	TraesCS4A01G475800	chr4A	736456863	736459146	2283	True	2383.000000	2383	85.63400	384	2672	1	chr4A.!!$R4	2288
5	TraesCS4A01G475800	chr4A	736803095	736806227	3132	False	1573.000000	2715	84.64750	1	3212	2	chr4A.!!$F8	3211
6	TraesCS4A01G475800	chr4A	736140778	736144785	4007	False	1441.666667	2990	86.38500	1	4015	3	chr4A.!!$F7	4014
7	TraesCS4A01G475800	chr4A	735519843	735520573	730	True	1179.000000	1179	95.75900	1968	2698	1	chr4A.!!$R2	730
8	TraesCS4A01G475800	chr4A	736046634	736050657	4023	False	627.000000	1110	90.25800	2609	4007	3	chr4A.!!$F6	1398
9	TraesCS4A01G475800	chr4A	735489628	735491010	1382	True	470.000000	579	87.78550	3101	4024	2	chr4A.!!$R5	923
10	TraesCS4A01G475800	chr7D	575925161	575928343	3182	True	1862.000000	3127	87.61700	4	3228	2	chr7D.!!$R3	3224
11	TraesCS4A01G475800	chr7D	5651474	5656944	5470	True	1209.775000	3402	89.85725	5	4182	4	chr7D.!!$R2	4177
12	TraesCS4A01G475800	chr7A	666794588	666797745	3157	True	1739.500000	2902	86.56200	4	3232	2	chr7A.!!$R1	3228
13	TraesCS4A01G475800	chr5B	98511096	98514237	3141	False	1507.500000	2529	85.30400	1	3238	2	chr5B.!!$F1	3237
14	TraesCS4A01G475800	chr2D	637637439	637640550	3111	True	1348.500000	2309	82.36600	87	3246	2	chr2D.!!$R1	3159

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
304	307	1.091771	ATCGCTTCGTGCCTTGGATG	61.092	55.000	0.0	0.0	38.78	3.51	F
1449	1458	1.076024	AGTGGCTCCATTCCAACACAT	59.924	47.619	0.0	0.0	35.01	3.21	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1795	1804	0.324943	AGTTTCAGTGATGGGGGACG	59.675	55.0	0.0	0.0	0.0	4.79	R
3288	7220	0.393808	TAGAATCACCCCAAAGCCGC	60.394	55.0	0.0	0.0	0.0	6.53	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	7.451731	TCCTTCATAACCAGTGATCCTAAAT	57.548	36.000	0.00	0.00	0.00	1.40
281	284	1.677552	CGGGTAGCCTCAGTGGTTT	59.322	57.895	9.73	0.00	38.35	3.27
304	307	1.091771	ATCGCTTCGTGCCTTGGATG	61.092	55.000	0.00	0.00	38.78	3.51
371	374	3.785486	TCCTATCAAAGCTCACATCACG	58.215	45.455	0.00	0.00	0.00	4.35
397	400	5.047847	GCGTTAGCCATAACAATCTGACTA	58.952	41.667	0.00	0.00	41.22	2.59
420	423	7.869937	ACTAGTGATATTCCAATGTCATTCTCG	59.130	37.037	0.00	0.00	38.51	4.04
488	491	2.830370	CCAAATCCCGAGCTGGCC	60.830	66.667	0.00	0.00	35.87	5.36
517	520	4.284490	ACCTGACATCACTGACACACTTAT	59.716	41.667	0.00	0.00	0.00	1.73
626	629	1.149923	ACTGGAAGGCCTTTTTCCCAT	59.850	47.619	21.54	9.31	42.79	4.00
685	688	1.301479	GGCTTCAACCGGTTCTCGT	60.301	57.895	19.24	0.00	37.11	4.18
696	701	1.746220	CGGTTCTCGTGATCTCTTCCT	59.254	52.381	0.00	0.00	0.00	3.36
1036	1044	7.148672	CCATTGCTAATCTATCTACAAAGCTCG	60.149	40.741	0.00	0.00	0.00	5.03
1449	1458	1.076024	AGTGGCTCCATTCCAACACAT	59.924	47.619	0.00	0.00	35.01	3.21
1504	1513	6.975197	CGACTTATCAATGAACAAGCTCTCTA	59.025	38.462	7.58	0.00	0.00	2.43
1551	1560	2.582052	TGCGTCCAACTGAATTTCCTT	58.418	42.857	0.00	0.00	0.00	3.36
1683	1692	3.450457	AGTTCCTCCAGAGTTATGAGCTG	59.550	47.826	0.00	0.00	0.00	4.24
1759	1768	4.038271	TGGATCTTCTGCAATTCCACTT	57.962	40.909	0.00	0.00	31.67	3.16
1960	1984	5.683681	AGCCAAGAATCAAACCAAACATTT	58.316	33.333	0.00	0.00	0.00	2.32
2392	2431	3.083293	TGCATTGCTCTTGATGTTGCTA	58.917	40.909	10.49	0.00	0.00	3.49
2610	2649	0.108992	GATACGTCGCACCAGGTCAA	60.109	55.000	0.00	0.00	0.00	3.18
2888	2962	2.908916	GCTACGGGGTGTTGCTATTAA	58.091	47.619	0.00	0.00	44.51	1.40
3030	6901	2.517450	GCGGAGACATGCAGCGTAC	61.517	63.158	0.00	0.00	0.00	3.67
3270	7202	2.198827	TATCCTGTGGCCTGTTTGTG	57.801	50.000	3.32	0.00	0.00	3.33
3271	7203	0.540365	ATCCTGTGGCCTGTTTGTGG	60.540	55.000	3.32	0.00	0.00	4.17
3272	7204	1.455587	CCTGTGGCCTGTTTGTGGT	60.456	57.895	3.32	0.00	0.00	4.16
3273	7205	1.455383	CCTGTGGCCTGTTTGTGGTC	61.455	60.000	3.32	0.00	0.00	4.02
3274	7206	0.466189	CTGTGGCCTGTTTGTGGTCT	60.466	55.000	3.32	0.00	0.00	3.85
3275	7207	0.751277	TGTGGCCTGTTTGTGGTCTG	60.751	55.000	3.32	0.00	0.00	3.51
3276	7208	1.152777	TGGCCTGTTTGTGGTCTGG	60.153	57.895	3.32	0.00	0.00	3.86
3277	7209	1.903404	GGCCTGTTTGTGGTCTGGG	60.903	63.158	0.00	0.00	0.00	4.45
3278	7210	1.150536	GCCTGTTTGTGGTCTGGGA	59.849	57.895	0.00	0.00	0.00	4.37
3279	7211	0.467290	GCCTGTTTGTGGTCTGGGAA	60.467	55.000	0.00	0.00	0.00	3.97
3280	7212	1.609208	CCTGTTTGTGGTCTGGGAAG	58.391	55.000	0.00	0.00	0.00	3.46
3281	7213	0.954452	CTGTTTGTGGTCTGGGAAGC	59.046	55.000	0.00	0.00	0.00	3.86
3282	7214	0.467290	TGTTTGTGGTCTGGGAAGCC	60.467	55.000	0.00	0.00	0.00	4.35
3283	7215	0.178990	GTTTGTGGTCTGGGAAGCCT	60.179	55.000	0.00	0.00	0.00	4.58
3284	7216	0.178992	TTTGTGGTCTGGGAAGCCTG	60.179	55.000	0.00	0.00	0.00	4.85
3285	7217	1.352622	TTGTGGTCTGGGAAGCCTGT	61.353	55.000	0.00	0.00	0.00	4.00
3286	7218	1.352622	TGTGGTCTGGGAAGCCTGTT	61.353	55.000	0.00	0.00	0.00	3.16
3287	7219	0.178990	GTGGTCTGGGAAGCCTGTTT	60.179	55.000	0.00	0.00	0.00	2.83
3288	7220	0.178992	TGGTCTGGGAAGCCTGTTTG	60.179	55.000	0.00	0.00	0.00	2.93
3289	7221	1.527433	GGTCTGGGAAGCCTGTTTGC	61.527	60.000	0.00	0.00	0.00	3.68
3307	7239	0.393808	GCGGCTTTGGGGTGATTCTA	60.394	55.000	0.00	0.00	0.00	2.10
3439	7371	6.546034	ACTTTTAAGCCTGAAAGAAGTGCTAA	59.454	34.615	6.58	0.00	36.58	3.09
3453	7385	2.432146	AGTGCTAATCTGATTCGGAGCA	59.568	45.455	17.86	17.86	37.58	4.26
3476	7408	6.307155	CACTAAAATTCAAAGTGCTACTCCG	58.693	40.000	2.87	0.00	34.73	4.63
3479	7411	1.508632	TTCAAAGTGCTACTCCGTGC	58.491	50.000	0.00	0.00	0.00	5.34
3508	7440	4.040829	TCTGGTTGCTTCTCAGATTCTTGA	59.959	41.667	0.00	0.00	33.21	3.02
3517	7449	6.800892	GCTTCTCAGATTCTTGACATCAAAAC	59.199	38.462	0.00	0.00	35.15	2.43
3542	7474	8.540388	ACTCAGCTCTTTGGTTTTCATAGTATA	58.460	33.333	0.00	0.00	0.00	1.47
3669	8049	3.505386	ACCCATTGGTTACTGCATGAAA	58.495	40.909	0.00	0.00	44.75	2.69
3670	8050	3.511146	ACCCATTGGTTACTGCATGAAAG	59.489	43.478	0.00	0.00	44.75	2.62
3687	8080	4.776349	TGAAAGTTGTGTCTTTGCCTCTA	58.224	39.130	0.00	0.00	37.70	2.43
3727	8120	4.158394	TCTCAATTGCAAAATACAGGGCTC	59.842	41.667	1.71	0.00	0.00	4.70
3728	8121	3.831333	TCAATTGCAAAATACAGGGCTCA	59.169	39.130	1.71	0.00	0.00	4.26
3737	8130	3.737559	ATACAGGGCTCATTTTGACCA	57.262	42.857	0.00	0.00	0.00	4.02
3766	8159	8.805688	CAACTTTAAAATTTTGGTTGCAAATGG	58.194	29.630	21.41	6.42	0.00	3.16
3780	8173	8.105829	TGGTTGCAAATGGTTTGGATAATATTT	58.894	29.630	0.00	0.00	40.72	1.40
3904	8362	3.496884	GGTCAAAGTATGTCGAACAAGCA	59.503	43.478	0.00	0.00	0.00	3.91
3917	8375	6.690957	TGTCGAACAAGCAAATTTTGAGTTAG	59.309	34.615	13.26	12.55	0.00	2.34
3920	8378	8.399425	TCGAACAAGCAAATTTTGAGTTAGTAA	58.601	29.630	13.26	0.00	0.00	2.24
4063	8525	9.660180	GAAAGAGAGTATTTTCAGGTCATTAGT	57.340	33.333	0.00	0.00	34.31	2.24
4105	8567	3.765511	CCCATTTGAACCATCATCACTGT	59.234	43.478	0.00	0.00	34.96	3.55
4107	8569	5.404946	CCATTTGAACCATCATCACTGTTC	58.595	41.667	0.00	0.00	38.03	3.18
4131	8593	2.503356	TCTTGCCTCCCTCTCTTCAATC	59.497	50.000	0.00	0.00	0.00	2.67
4132	8594	1.956869	TGCCTCCCTCTCTTCAATCA	58.043	50.000	0.00	0.00	0.00	2.57
4137	8599	2.433970	CTCCCTCTCTTCAATCAGACCC	59.566	54.545	0.00	0.00	0.00	4.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	1.203187	AGACCAAGAGGACAGTGCCTA	60.203	52.381	6.15	0.00	38.73	3.93
304	307	4.082733	GCCAAAAAGGTAGTTCATCCTCAC	60.083	45.833	0.00	0.00	40.61	3.51
371	374	2.614057	AGATTGTTATGGCTAACGCTGC	59.386	45.455	0.00	0.00	40.15	5.25
397	400	6.820335	TCGAGAATGACATTGGAATATCACT	58.180	36.000	5.14	0.00	0.00	3.41
420	423	1.267121	TAGTGAGGGCTGTGAGGTTC	58.733	55.000	0.00	0.00	0.00	3.62
488	491	1.000843	TCAGTGATGTCAGGTTGTCGG	59.999	52.381	0.00	0.00	0.00	4.79
491	494	2.170397	TGTGTCAGTGATGTCAGGTTGT	59.830	45.455	0.00	0.00	0.00	3.32
517	520	5.652014	CACTGAAACCATTCTGGCCTAATTA	59.348	40.000	3.32	0.00	42.67	1.40
543	546	1.814793	CGAGAGCCGGAGAGATATGA	58.185	55.000	5.05	0.00	33.91	2.15
567	570	6.037062	TGTCGAATGTAACAAGATTAGCCATG	59.963	38.462	0.00	0.00	0.00	3.66
626	629	7.614974	TGATGGAAGAAATATTGAACATGGACA	59.385	33.333	0.00	0.00	0.00	4.02
685	688	5.605908	AGCCAATATCAAGAGGAAGAGATCA	59.394	40.000	0.00	0.00	0.00	2.92
696	701	6.663093	TGGAAAGCTTAAAGCCAATATCAAGA	59.337	34.615	0.00	0.00	43.77	3.02
763	771	6.127647	GCATTTGACAAGGAAGATGGTATTCA	60.128	38.462	0.33	0.00	0.00	2.57
1036	1044	9.444600	TTTGTTTCTACCTATTGTAATCCAGTC	57.555	33.333	0.00	0.00	0.00	3.51
1394	1403	3.119424	GGAGAGGTTGAGAAGTAAGGTCG	60.119	52.174	0.00	0.00	0.00	4.79
1473	1482	7.549134	AGCTTGTTCATTGATAAGTCGATTGTA	59.451	33.333	10.86	0.00	0.00	2.41
1635	1644	8.656806	TCAGGTATGGGTCCTACTAAATTATTG	58.343	37.037	0.00	0.00	33.54	1.90
1646	1655	2.590611	AGGAACTCAGGTATGGGTCCTA	59.409	50.000	0.00	0.00	40.08	2.94
1683	1692	7.256286	TGAAAGAGAGGTTTAGATACGTTAGC	58.744	38.462	0.00	0.00	0.00	3.09
1759	1768	5.130350	GCTATTACCAGGGAGCAACATTAA	58.870	41.667	0.00	0.00	34.96	1.40
1795	1804	0.324943	AGTTTCAGTGATGGGGGACG	59.675	55.000	0.00	0.00	0.00	4.79
1960	1984	6.323482	TGGTGAAATCTGGTTTCTTGATCAAA	59.677	34.615	14.01	0.00	45.22	2.69
2392	2431	7.520798	TGATGGTGAAGATATTCTAATGCCTT	58.479	34.615	1.19	0.00	0.00	4.35
2861	2935	4.094476	AGCAACACCCCGTAGCTATATAT	58.906	43.478	0.00	0.00	33.06	0.86
2888	2962	5.837829	TGGCCTCCTTCCAGTAAATATTTT	58.162	37.500	5.91	0.00	0.00	1.82
3030	6901	8.417106	ACACAGGATACAAGAACATATCTACAG	58.583	37.037	0.00	0.00	37.42	2.74
3270	7202	1.527433	GCAAACAGGCTTCCCAGACC	61.527	60.000	0.00	0.00	0.00	3.85
3271	7203	1.856265	CGCAAACAGGCTTCCCAGAC	61.856	60.000	0.00	0.00	0.00	3.51
3272	7204	1.600636	CGCAAACAGGCTTCCCAGA	60.601	57.895	0.00	0.00	0.00	3.86
3273	7205	2.629656	CCGCAAACAGGCTTCCCAG	61.630	63.158	0.00	0.00	0.00	4.45
3274	7206	2.597217	CCGCAAACAGGCTTCCCA	60.597	61.111	0.00	0.00	0.00	4.37
3281	7213	2.339712	CCCAAAGCCGCAAACAGG	59.660	61.111	0.00	0.00	0.00	4.00
3282	7214	2.339712	CCCCAAAGCCGCAAACAG	59.660	61.111	0.00	0.00	0.00	3.16
3283	7215	2.443016	ACCCCAAAGCCGCAAACA	60.443	55.556	0.00	0.00	0.00	2.83
3284	7216	1.815817	ATCACCCCAAAGCCGCAAAC	61.816	55.000	0.00	0.00	0.00	2.93
3285	7217	1.118356	AATCACCCCAAAGCCGCAAA	61.118	50.000	0.00	0.00	0.00	3.68
3286	7218	1.531739	GAATCACCCCAAAGCCGCAA	61.532	55.000	0.00	0.00	0.00	4.85
3287	7219	1.976474	GAATCACCCCAAAGCCGCA	60.976	57.895	0.00	0.00	0.00	5.69
3288	7220	0.393808	TAGAATCACCCCAAAGCCGC	60.394	55.000	0.00	0.00	0.00	6.53
3289	7221	2.122783	TTAGAATCACCCCAAAGCCG	57.877	50.000	0.00	0.00	0.00	5.52
3307	7239	6.600882	ATGAGAAATGGAAATGCTGACTTT	57.399	33.333	0.00	0.00	0.00	2.66
3439	7371	6.115446	TGAATTTTAGTGCTCCGAATCAGAT	58.885	36.000	0.00	0.00	0.00	2.90
3453	7385	5.995897	ACGGAGTAGCACTTTGAATTTTAGT	59.004	36.000	0.00	0.00	41.94	2.24
3508	7440	4.210331	ACCAAAGAGCTGAGTTTTGATGT	58.790	39.130	0.00	0.00	34.55	3.06
3517	7449	7.856145	ATACTATGAAAACCAAAGAGCTGAG	57.144	36.000	0.00	0.00	0.00	3.35
3542	7474	7.716560	TGTGCAGCAAAAGTCATCAGTATATAT	59.283	33.333	0.00	0.00	0.00	0.86
3549	7481	3.358707	TTGTGCAGCAAAAGTCATCAG	57.641	42.857	0.00	0.00	33.53	2.90
3576	7896	3.970640	AGATGACTAGATCCAAGAACCCC	59.029	47.826	0.00	0.00	0.00	4.95
3579	7899	5.221422	CCTGGAGATGACTAGATCCAAGAAC	60.221	48.000	0.00	0.00	41.17	3.01
3581	7901	4.478203	CCTGGAGATGACTAGATCCAAGA	58.522	47.826	0.00	0.00	41.17	3.02
3582	7902	3.006752	GCCTGGAGATGACTAGATCCAAG	59.993	52.174	0.00	0.00	41.17	3.61
3584	7904	2.603021	GCCTGGAGATGACTAGATCCA	58.397	52.381	0.00	1.26	39.50	3.41
3585	7905	1.899142	GGCCTGGAGATGACTAGATCC	59.101	57.143	0.00	0.00	0.00	3.36
3591	7911	3.342926	AATAGAGGCCTGGAGATGACT	57.657	47.619	12.00	0.00	0.00	3.41
3669	8049	2.438021	TGGTAGAGGCAAAGACACAACT	59.562	45.455	0.00	0.00	0.00	3.16
3670	8050	2.846193	TGGTAGAGGCAAAGACACAAC	58.154	47.619	0.00	0.00	0.00	3.32
3687	8080	3.387962	TGAGAGGCTGGAGAATATTGGT	58.612	45.455	0.00	0.00	0.00	3.67
3889	8347	6.636850	ACTCAAAATTTGCTTGTTCGACATAC	59.363	34.615	0.00	0.00	0.00	2.39
3917	8375	8.975295	TCTTACCCCTCTCAACTTTAGTATTAC	58.025	37.037	0.00	0.00	0.00	1.89
3920	8378	8.445361	TTTCTTACCCCTCTCAACTTTAGTAT	57.555	34.615	0.00	0.00	0.00	2.12
3926	8387	5.906772	TCTTTTCTTACCCCTCTCAACTT	57.093	39.130	0.00	0.00	0.00	2.66
3928	8389	6.570571	GCAAATCTTTTCTTACCCCTCTCAAC	60.571	42.308	0.00	0.00	0.00	3.18
4031	8493	9.930693	GACCTGAAAATACTCTCTTTCTTTCTA	57.069	33.333	0.00	0.00	33.55	2.10
4032	8494	8.432805	TGACCTGAAAATACTCTCTTTCTTTCT	58.567	33.333	0.00	0.00	33.55	2.52
4033	8495	8.608844	TGACCTGAAAATACTCTCTTTCTTTC	57.391	34.615	0.00	0.00	33.55	2.62
4034	8496	9.579932	AATGACCTGAAAATACTCTCTTTCTTT	57.420	29.630	0.00	0.00	33.55	2.52
4036	8498	9.883142	CTAATGACCTGAAAATACTCTCTTTCT	57.117	33.333	0.00	0.00	33.55	2.52
4037	8499	9.660180	ACTAATGACCTGAAAATACTCTCTTTC	57.340	33.333	0.00	0.00	33.10	2.62
4038	8500	9.660180	GACTAATGACCTGAAAATACTCTCTTT	57.340	33.333	0.00	0.00	0.00	2.52
4039	8501	9.041354	AGACTAATGACCTGAAAATACTCTCTT	57.959	33.333	0.00	0.00	0.00	2.85
4040	8502	8.474025	CAGACTAATGACCTGAAAATACTCTCT	58.526	37.037	0.00	0.00	0.00	3.10
4041	8503	8.470805	TCAGACTAATGACCTGAAAATACTCTC	58.529	37.037	0.00	0.00	34.38	3.20
4042	8504	8.367660	TCAGACTAATGACCTGAAAATACTCT	57.632	34.615	0.00	0.00	34.38	3.24
4043	8505	9.092876	CTTCAGACTAATGACCTGAAAATACTC	57.907	37.037	0.00	0.00	43.65	2.59
4044	8506	8.816894	TCTTCAGACTAATGACCTGAAAATACT	58.183	33.333	0.00	0.00	43.65	2.12
4045	8507	9.436957	TTCTTCAGACTAATGACCTGAAAATAC	57.563	33.333	0.00	0.00	43.65	1.89
4082	8544	3.765511	CAGTGATGATGGTTCAAATGGGT	59.234	43.478	0.00	0.00	34.96	4.51
4105	8567	2.625639	AGAGAGGGAGGCAAGAAAGAA	58.374	47.619	0.00	0.00	0.00	2.52
4107	8569	2.304180	TGAAGAGAGGGAGGCAAGAAAG	59.696	50.000	0.00	0.00	0.00	2.62
4131	8593	0.314935	GCACATTGGTGTTGGGTCTG	59.685	55.000	0.00	0.00	46.95	3.51
4132	8594	0.185901	AGCACATTGGTGTTGGGTCT	59.814	50.000	0.00	0.00	46.95	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.