Multiple sequence alignment - TraesCS4A01G475600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G475600 chr4A 100.000 4720 0 0 1 4720 734448898 734444179 0.000000e+00 8717.0
1 TraesCS4A01G475600 chr4A 92.132 3114 179 29 1570 4659 734349986 734346915 0.000000e+00 4333.0
2 TraesCS4A01G475600 chr4A 94.716 1987 101 2 1570 3552 735161569 735159583 0.000000e+00 3085.0
3 TraesCS4A01G475600 chr4A 92.131 1563 104 9 2101 3660 736257157 736258703 0.000000e+00 2187.0
4 TraesCS4A01G475600 chr4A 93.510 1433 89 3 2123 3552 736693230 736691799 0.000000e+00 2128.0
5 TraesCS4A01G475600 chr4A 91.975 1433 98 2 2123 3552 735950982 735949564 0.000000e+00 1993.0
6 TraesCS4A01G475600 chr4A 93.868 1223 66 5 2289 3502 734949092 734947870 0.000000e+00 1834.0
7 TraesCS4A01G475600 chr4A 96.988 498 15 0 1570 2067 735951478 735950981 0.000000e+00 837.0
8 TraesCS4A01G475600 chr4A 96.289 512 15 3 1570 2079 736256655 736257164 0.000000e+00 837.0
9 TraesCS4A01G475600 chr4A 88.145 523 46 6 1572 2081 736693761 736693242 4.040000e-170 608.0
10 TraesCS4A01G475600 chr4A 85.775 471 59 7 3551 4015 736691752 736691284 4.240000e-135 492.0
11 TraesCS4A01G475600 chr4A 91.159 328 24 2 3730 4052 736271378 736271051 1.560000e-119 440.0
12 TraesCS4A01G475600 chr4A 97.845 232 5 0 208 439 734350210 734349979 7.360000e-108 401.0
13 TraesCS4A01G475600 chr4A 96.983 232 7 0 208 439 736256431 736256662 1.590000e-104 390.0
14 TraesCS4A01G475600 chr4A 99.522 209 0 1 1 208 736256180 736256388 3.450000e-101 379.0
15 TraesCS4A01G475600 chr4A 95.726 234 8 2 1848 2079 734953808 734953575 4.460000e-100 375.0
16 TraesCS4A01G475600 chr4A 92.558 215 8 3 1 208 734890807 734890594 7.680000e-78 302.0
17 TraesCS4A01G475600 chr4A 96.815 157 3 1 208 362 735953419 735953263 1.300000e-65 261.0
18 TraesCS4A01G475600 chr4A 90.000 190 15 2 2101 2289 734953582 734953396 4.720000e-60 243.0
19 TraesCS4A01G475600 chr4A 89.349 169 17 1 3556 3723 735159537 735159369 1.330000e-50 211.0
20 TraesCS4A01G475600 chr4A 89.349 169 17 1 3556 3723 735949518 735949350 1.330000e-50 211.0
21 TraesCS4A01G475600 chr4A 93.056 144 9 1 297 439 735161705 735161562 4.790000e-50 209.0
22 TraesCS4A01G475600 chr4A 92.254 142 10 1 297 437 734890429 734890288 2.880000e-47 200.0
23 TraesCS4A01G475600 chr4A 96.703 91 3 0 349 439 735951561 735951471 8.180000e-33 152.0
24 TraesCS4A01G475600 chr4A 97.403 77 1 1 132 208 735161943 735161868 3.830000e-26 130.0
25 TraesCS4A01G475600 chr4A 98.592 71 1 0 208 278 735161825 735161755 4.960000e-25 126.0
26 TraesCS4A01G475600 chr4A 96.053 76 3 0 208 283 734890551 734890476 1.780000e-24 124.0
27 TraesCS4A01G475600 chr4A 97.143 70 1 1 139 208 734350321 734350253 2.980000e-22 117.0
28 TraesCS4A01G475600 chr4A 95.714 70 2 1 139 208 735953530 735953462 1.390000e-20 111.0
29 TraesCS4A01G475600 chr7D 90.629 2113 136 16 2624 4720 5819435 5821501 0.000000e+00 2748.0
30 TraesCS4A01G475600 chr7D 93.210 1723 103 8 2162 3880 5926743 5928455 0.000000e+00 2521.0
31 TraesCS4A01G475600 chr7D 90.820 512 44 2 1577 2087 5920615 5921124 0.000000e+00 682.0
32 TraesCS4A01G475600 chr7D 85.539 408 35 13 3884 4283 5928537 5928928 5.690000e-109 405.0
33 TraesCS4A01G475600 chr7D 90.155 193 19 0 1572 1764 5840709 5840901 7.840000e-63 252.0
34 TraesCS4A01G475600 chr7D 92.308 78 5 1 4349 4426 5928922 5928998 4.990000e-20 110.0
35 TraesCS4A01G475600 chr7B 99.201 1127 8 1 444 1570 144745368 144746493 0.000000e+00 2030.0
36 TraesCS4A01G475600 chr7B 97.543 407 9 1 1163 1569 638484537 638484132 0.000000e+00 695.0
37 TraesCS4A01G475600 chr7B 90.652 353 7 3 440 790 638484868 638484540 3.350000e-121 446.0
38 TraesCS4A01G475600 chr1A 99.027 1131 10 1 440 1569 321907925 321906795 0.000000e+00 2026.0
39 TraesCS4A01G475600 chr1A 99.344 1067 7 0 505 1571 14246379 14245313 0.000000e+00 1932.0
40 TraesCS4A01G475600 chr5B 98.851 1131 11 2 440 1569 422049838 422048709 0.000000e+00 2015.0
41 TraesCS4A01G475600 chr5B 93.652 1150 50 8 439 1569 544694019 544692874 0.000000e+00 1698.0
42 TraesCS4A01G475600 chr3B 96.673 1142 24 6 439 1569 794923401 794924539 0.000000e+00 1886.0
43 TraesCS4A01G475600 chr3B 95.092 1141 24 13 441 1573 115975441 115974325 0.000000e+00 1768.0
44 TraesCS4A01G475600 chr3B 89.431 123 12 1 4235 4356 756252975 756252853 2.270000e-33 154.0
45 TraesCS4A01G475600 chr5A 84.367 1177 121 31 439 1568 6880943 6882103 0.000000e+00 1096.0
46 TraesCS4A01G475600 chr5D 83.930 1033 91 32 578 1571 282215518 282216514 0.000000e+00 918.0
47 TraesCS4A01G475600 chr3D 86.032 809 90 16 679 1469 615065956 615065153 0.000000e+00 846.0
48 TraesCS4A01G475600 chr2D 87.560 209 26 0 4512 4720 630068104 630067896 4.720000e-60 243.0
49 TraesCS4A01G475600 chr2D 84.181 177 22 3 4354 4526 630048785 630048611 2.920000e-37 167.0
50 TraesCS4A01G475600 chr2B 87.500 208 23 2 4512 4719 773006179 773005975 2.200000e-58 237.0
51 TraesCS4A01G475600 chr2B 87.129 101 13 0 2420 2520 30655427 30655327 1.070000e-21 115.0
52 TraesCS4A01G475600 chr2A 81.503 173 20 8 3124 3296 19902127 19902287 1.070000e-26 132.0
53 TraesCS4A01G475600 chr2A 88.119 101 12 0 2420 2520 19893336 19893436 2.310000e-23 121.0
54 TraesCS4A01G475600 chr2A 86.420 81 9 2 4 82 89961619 89961699 2.340000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G475600 chr4A 734444179 734448898 4719 True 8717.000000 8717 100.000000 1 4720 1 chr4A.!!$R1 4719
1 TraesCS4A01G475600 chr4A 734947870 734949092 1222 True 1834.000000 1834 93.868000 2289 3502 1 chr4A.!!$R2 1213
2 TraesCS4A01G475600 chr4A 734346915 734350321 3406 True 1617.000000 4333 95.706667 139 4659 3 chr4A.!!$R4 4520
3 TraesCS4A01G475600 chr4A 736691284 736693761 2477 True 1076.000000 2128 89.143333 1572 4015 3 chr4A.!!$R9 2443
4 TraesCS4A01G475600 chr4A 736256180 736258703 2523 False 948.250000 2187 96.231250 1 3660 4 chr4A.!!$F1 3659
5 TraesCS4A01G475600 chr4A 735159369 735161943 2574 True 752.200000 3085 94.623200 132 3723 5 chr4A.!!$R7 3591
6 TraesCS4A01G475600 chr4A 735949350 735953530 4180 True 594.166667 1993 94.590667 139 3723 6 chr4A.!!$R8 3584
7 TraesCS4A01G475600 chr4A 734890288 734890807 519 True 208.666667 302 93.621667 1 437 3 chr4A.!!$R5 436
8 TraesCS4A01G475600 chr7D 5819435 5821501 2066 False 2748.000000 2748 90.629000 2624 4720 1 chr7D.!!$F1 2096
9 TraesCS4A01G475600 chr7D 5926743 5928998 2255 False 1012.000000 2521 90.352333 2162 4426 3 chr7D.!!$F4 2264
10 TraesCS4A01G475600 chr7D 5920615 5921124 509 False 682.000000 682 90.820000 1577 2087 1 chr7D.!!$F3 510
11 TraesCS4A01G475600 chr7B 144745368 144746493 1125 False 2030.000000 2030 99.201000 444 1570 1 chr7B.!!$F1 1126
12 TraesCS4A01G475600 chr7B 638484132 638484868 736 True 570.500000 695 94.097500 440 1569 2 chr7B.!!$R1 1129
13 TraesCS4A01G475600 chr1A 321906795 321907925 1130 True 2026.000000 2026 99.027000 440 1569 1 chr1A.!!$R2 1129
14 TraesCS4A01G475600 chr1A 14245313 14246379 1066 True 1932.000000 1932 99.344000 505 1571 1 chr1A.!!$R1 1066
15 TraesCS4A01G475600 chr5B 422048709 422049838 1129 True 2015.000000 2015 98.851000 440 1569 1 chr5B.!!$R1 1129
16 TraesCS4A01G475600 chr5B 544692874 544694019 1145 True 1698.000000 1698 93.652000 439 1569 1 chr5B.!!$R2 1130
17 TraesCS4A01G475600 chr3B 794923401 794924539 1138 False 1886.000000 1886 96.673000 439 1569 1 chr3B.!!$F1 1130
18 TraesCS4A01G475600 chr3B 115974325 115975441 1116 True 1768.000000 1768 95.092000 441 1573 1 chr3B.!!$R1 1132
19 TraesCS4A01G475600 chr5A 6880943 6882103 1160 False 1096.000000 1096 84.367000 439 1568 1 chr5A.!!$F1 1129
20 TraesCS4A01G475600 chr5D 282215518 282216514 996 False 918.000000 918 83.930000 578 1571 1 chr5D.!!$F1 993
21 TraesCS4A01G475600 chr3D 615065153 615065956 803 True 846.000000 846 86.032000 679 1469 1 chr3D.!!$R1 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 290 1.864082 TGTTGTGCTCGTGTATGTGTG 59.136 47.619 0.00 0.0 0.00 3.82 F
1697 3025 1.302993 GGTTAGGGTTTGCCTGCGA 60.303 57.895 0.00 0.0 34.45 5.10 F
3084 4443 0.531532 GAGGAGGTGGACGATGCATG 60.532 60.000 2.46 0.0 0.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2018 3363 1.005556 TTGTCCCCCTCCCCTATGG 59.994 63.158 0.00 0.0 0.0 2.74 R
3499 4891 0.107312 GACAGGCAGCTCACCATCAT 60.107 55.000 5.13 0.0 0.0 2.45 R
4659 6240 0.535102 GGAGCCGGGATTACATGGTG 60.535 60.000 2.18 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
238 290 1.864082 TGTTGTGCTCGTGTATGTGTG 59.136 47.619 0.00 0.00 0.00 3.82
414 502 1.974957 TCCGACCCTTCTTCACATTCA 59.025 47.619 0.00 0.00 0.00 2.57
1601 2927 1.497309 CCTGGCCTGGTAGGGTTTCA 61.497 60.000 20.28 0.00 35.37 2.69
1632 2958 2.618045 CCAGCAAGGGTACGAGGATTTT 60.618 50.000 0.00 0.00 0.00 1.82
1661 2987 2.566010 CCAATCAAACGCCGGTGG 59.434 61.111 21.14 4.30 0.00 4.61
1662 2988 2.265182 CCAATCAAACGCCGGTGGT 61.265 57.895 21.14 10.82 0.00 4.16
1697 3025 1.302993 GGTTAGGGTTTGCCTGCGA 60.303 57.895 0.00 0.00 34.45 5.10
1786 3127 1.355210 CGTGCGAGGTTTTTGCTGT 59.645 52.632 0.00 0.00 37.09 4.40
2018 3363 1.751924 AGTCGATGCCTACCTGAAGTC 59.248 52.381 0.00 0.00 0.00 3.01
2097 3443 6.784473 TCTCCTCTCTTTATGATGCTAATCCA 59.216 38.462 0.00 0.00 31.15 3.41
2258 3610 4.156190 AGACGTACATGTTCGACAGAGAAT 59.844 41.667 28.32 6.01 32.25 2.40
2273 3625 8.073768 TCGACAGAGAATTTGATTTTGTTAACC 58.926 33.333 2.48 0.00 0.00 2.85
2415 3770 7.957484 CGACAACATTGTGGAAGATTTTACTAG 59.043 37.037 1.07 0.00 42.43 2.57
2504 3859 4.597507 TGGATGACCCACTTAGAGTTCTTT 59.402 41.667 0.00 0.00 40.82 2.52
2545 3900 6.344780 CCGCTAGATTCAACTTTACGTTATCG 60.345 42.308 0.00 0.00 43.34 2.92
2557 3912 6.976925 ACTTTACGTTATCGGATAGGTTGAAG 59.023 38.462 0.00 12.84 41.85 3.02
2661 4019 4.982701 AGGCCAACACCCAGCTGC 62.983 66.667 8.66 0.00 0.00 5.25
2687 4046 5.291858 GCAATGTCTTACATTCGTGATCTGA 59.708 40.000 2.36 0.00 44.91 3.27
2700 4059 8.651588 CATTCGTGATCTGAGGCTATTTTATAC 58.348 37.037 0.00 0.00 0.00 1.47
2743 4102 3.749665 TGCAACCCTCCAATTTTTGAG 57.250 42.857 0.00 0.00 0.00 3.02
2757 4116 6.308766 CCAATTTTTGAGAATTGTGATCGGTC 59.691 38.462 8.87 0.00 42.63 4.79
2795 4154 3.005050 TGAATCAGCTTGGAACTTTGCAG 59.995 43.478 0.00 0.00 0.00 4.41
2870 4229 4.342665 AGCTTTACCTCTATAGTGCACTCC 59.657 45.833 25.56 0.00 0.00 3.85
2874 4233 6.466885 TTACCTCTATAGTGCACTCCTTTC 57.533 41.667 25.56 0.00 0.00 2.62
2875 4234 3.707102 ACCTCTATAGTGCACTCCTTTCC 59.293 47.826 25.56 0.00 0.00 3.13
2942 4301 9.650539 AGATTGCTGTCACTAGCTATATTATTG 57.349 33.333 0.00 0.00 44.01 1.90
3031 4390 2.975732 TTGCTGATCTAGTGCTCCTG 57.024 50.000 0.00 0.00 0.00 3.86
3076 4435 1.181786 CTGTCAGAGAGGAGGTGGAC 58.818 60.000 0.00 0.00 0.00 4.02
3081 4440 1.040339 AGAGAGGAGGTGGACGATGC 61.040 60.000 0.00 0.00 0.00 3.91
3084 4443 0.531532 GAGGAGGTGGACGATGCATG 60.532 60.000 2.46 0.00 0.00 4.06
3089 4448 1.762370 AGGTGGACGATGCATGTCATA 59.238 47.619 22.34 12.87 38.10 2.15
3499 4891 4.708177 GCCAGAAAGTAGAATCCAGCATA 58.292 43.478 0.00 0.00 0.00 3.14
3520 4912 0.826715 GATGGTGAGCTGCCTGTCTA 59.173 55.000 0.00 0.00 0.00 2.59
3532 4924 3.993081 CTGCCTGTCTATGCTAGTTATGC 59.007 47.826 0.00 0.00 0.00 3.14
3541 4933 6.538742 GTCTATGCTAGTTATGCCAAGTCAAA 59.461 38.462 0.00 0.00 0.00 2.69
3637 5078 1.486310 ACTGCAGAATAGATTCCGCCA 59.514 47.619 23.35 0.00 38.97 5.69
3652 5107 8.006298 AGATTCCGCCAAAATATTTGTAATCA 57.994 30.769 0.39 0.00 0.00 2.57
3791 5263 5.178797 AGACTGCATTATGTACCACAAGAC 58.821 41.667 0.00 0.00 0.00 3.01
3792 5264 4.905429 ACTGCATTATGTACCACAAGACA 58.095 39.130 0.00 0.00 0.00 3.41
3847 5319 3.823304 AGCCTTGTCTCAATGGTTTTCTC 59.177 43.478 0.00 0.00 0.00 2.87
3914 5465 7.726291 TGGACCAATATGAACCACTTTTAGAAA 59.274 33.333 0.00 0.00 0.00 2.52
3986 5541 5.209977 GTTTTCGGTGGTAATCTGTTTCAC 58.790 41.667 0.00 0.00 0.00 3.18
4037 5607 7.434013 TCTTTTCGCTTTTCCTATGTTTTTCAC 59.566 33.333 0.00 0.00 0.00 3.18
4113 5685 0.676736 CCTCTCCCTGCCTTATCGAC 59.323 60.000 0.00 0.00 0.00 4.20
4149 5722 1.003118 GGAAAAGGGAAAACCATGCCC 59.997 52.381 0.00 0.00 43.89 5.36
4163 5736 5.046288 ACCATGCCCAAAATTCAAAAAGA 57.954 34.783 0.00 0.00 0.00 2.52
4329 5907 6.507900 TGAATGTAGGCGAATTGAAAAACAA 58.492 32.000 0.00 0.00 42.95 2.83
4473 6054 4.344102 CCACTTAAGACGAGGGAATCCATA 59.656 45.833 10.09 0.00 34.83 2.74
4495 6076 8.739039 CCATATTTAGACCACACATTTCAGAAA 58.261 33.333 0.00 0.00 0.00 2.52
4518 6099 6.945938 AACGAGTAATCTCAGCTACACTAT 57.054 37.500 0.00 0.00 40.44 2.12
4519 6100 6.307031 ACGAGTAATCTCAGCTACACTATG 57.693 41.667 0.00 0.00 40.44 2.23
4533 6114 2.234661 ACACTATGTCTTGCTGCTGCTA 59.765 45.455 17.00 8.35 40.48 3.49
4535 6116 2.208431 CTATGTCTTGCTGCTGCTACC 58.792 52.381 17.00 3.09 40.48 3.18
4536 6117 0.393537 ATGTCTTGCTGCTGCTACCC 60.394 55.000 17.00 3.43 40.48 3.69
4539 6120 4.408821 TTGCTGCTGCTACCCCCG 62.409 66.667 17.00 0.00 40.48 5.73
4583 6164 1.367840 GGGCGAGCTTCCGTATCAT 59.632 57.895 0.00 0.00 0.00 2.45
4667 6248 1.562008 CACCATGTACCCCACCATGTA 59.438 52.381 0.00 0.00 37.37 2.29
4668 6249 2.025793 CACCATGTACCCCACCATGTAA 60.026 50.000 0.00 0.00 37.37 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
238 290 3.677121 CGAGTGCTATCCTATGATGTTGC 59.323 47.826 0.00 0.00 32.18 4.17
710 827 3.566742 GTGTACAATGGGAAAAACGAGGT 59.433 43.478 0.00 0.00 0.00 3.85
1632 2958 1.068948 TTGATTGGGGAACGGAAGGA 58.931 50.000 0.00 0.00 0.00 3.36
1661 2987 1.133544 ACCCTAGATAGGTCCCGTCAC 60.134 57.143 5.21 0.00 42.03 3.67
1662 2988 1.229131 ACCCTAGATAGGTCCCGTCA 58.771 55.000 5.21 0.00 42.03 4.35
1786 3127 4.473196 TGTCATTACCTCCTGGAATTGCTA 59.527 41.667 0.00 0.00 37.04 3.49
1853 3194 2.826128 TGACGGACTACATCAAGAAGCT 59.174 45.455 0.00 0.00 0.00 3.74
2018 3363 1.005556 TTGTCCCCCTCCCCTATGG 59.994 63.158 0.00 0.00 0.00 2.74
2097 3443 4.014273 ACAATAATGAGGAGGAGGAGGT 57.986 45.455 0.00 0.00 0.00 3.85
2258 3610 6.831353 TCAGACCTCAGGTTAACAAAATCAAA 59.169 34.615 8.10 0.00 35.25 2.69
2273 3625 6.748333 TTCTGCATATTTTTCAGACCTCAG 57.252 37.500 0.00 0.00 36.67 3.35
2415 3770 6.078202 TGATGAGATCGTCAATACCTCTTC 57.922 41.667 2.24 0.00 39.19 2.87
2545 3900 2.092699 AGCAGCTTCCTTCAACCTATCC 60.093 50.000 0.00 0.00 0.00 2.59
2557 3912 0.523519 CCTTTTCCGAAGCAGCTTCC 59.476 55.000 26.35 11.19 37.20 3.46
2687 4046 6.966534 AGCAAATGCAGTATAAAATAGCCT 57.033 33.333 8.28 0.00 45.16 4.58
2700 4059 2.547299 TTTGGGGAAAGCAAATGCAG 57.453 45.000 8.28 0.00 45.16 4.41
2743 4102 4.749245 AACACAAGACCGATCACAATTC 57.251 40.909 0.00 0.00 0.00 2.17
2795 4154 1.009675 CACCGCTGTGCACTGAAAC 60.010 57.895 25.94 8.60 35.31 2.78
2875 4234 2.215942 AGAACATTTTTCGGAGGGGG 57.784 50.000 0.00 0.00 0.00 5.40
2915 4274 9.868277 AATAATATAGCTAGTGACAGCAATCTC 57.132 33.333 0.00 0.00 44.35 2.75
2942 4301 2.941720 CTGGCAGCTTTAATGACTCCTC 59.058 50.000 0.00 0.00 0.00 3.71
2993 4352 4.099266 AGCAAATTTTCCGCTGGCAATATA 59.901 37.500 1.01 0.00 33.91 0.86
2996 4355 1.002315 AGCAAATTTTCCGCTGGCAAT 59.998 42.857 1.01 0.00 33.91 3.56
3031 4390 4.789174 CGAAGCGACATTTGATTCAAAC 57.211 40.909 13.80 1.76 36.13 2.93
3064 4423 0.689080 ATGCATCGTCCACCTCCTCT 60.689 55.000 0.00 0.00 0.00 3.69
3076 4435 7.280652 TCCATTGGTATATTATGACATGCATCG 59.719 37.037 0.00 0.00 38.44 3.84
3081 4440 8.620116 TGTGTCCATTGGTATATTATGACATG 57.380 34.615 1.86 0.00 0.00 3.21
3084 4443 7.882791 TCCATGTGTCCATTGGTATATTATGAC 59.117 37.037 1.86 0.00 0.00 3.06
3089 4448 5.536161 GCTTCCATGTGTCCATTGGTATATT 59.464 40.000 1.86 0.00 0.00 1.28
3499 4891 0.107312 GACAGGCAGCTCACCATCAT 60.107 55.000 5.13 0.00 0.00 2.45
3520 4912 4.399303 GGTTTGACTTGGCATAACTAGCAT 59.601 41.667 0.00 0.00 0.00 3.79
3532 4924 0.670162 CACAGCAGGGTTTGACTTGG 59.330 55.000 0.00 0.00 0.00 3.61
3541 4933 1.075482 CAACCATCCACAGCAGGGT 59.925 57.895 0.00 0.00 0.00 4.34
3633 5074 6.035843 AGCAGTGATTACAAATATTTTGGCG 58.964 36.000 0.00 0.00 0.00 5.69
3637 5078 8.680903 CAGAGGAGCAGTGATTACAAATATTTT 58.319 33.333 0.00 0.00 0.00 1.82
3652 5107 6.097129 GGTTTTATAGTAGACAGAGGAGCAGT 59.903 42.308 0.00 0.00 0.00 4.40
3725 5182 3.435105 GCAACGGGCATGATAATTTCA 57.565 42.857 0.00 0.00 43.97 2.69
3791 5263 2.166254 ACAGCAGGTGAAAGGTTTTGTG 59.834 45.455 6.61 0.00 0.00 3.33
3792 5264 2.456577 ACAGCAGGTGAAAGGTTTTGT 58.543 42.857 6.61 0.00 0.00 2.83
3847 5319 0.102481 CGATTGGACCGGACCACTAG 59.898 60.000 25.73 16.35 39.85 2.57
4037 5607 6.695292 AAGCAAAACATATGAAAAGCGAAG 57.305 33.333 10.38 0.00 0.00 3.79
4113 5685 1.776662 TTCCTCGGAGGGTCACTATG 58.223 55.000 23.39 0.00 35.59 2.23
4163 5736 2.227194 CGACCCCTGTTTAGTTTTGCT 58.773 47.619 0.00 0.00 0.00 3.91
4329 5907 7.605410 ACGGATTTGTTATTTTGTAGTCGAT 57.395 32.000 0.00 0.00 0.00 3.59
4435 6016 0.677842 AGTGGGACGAAGCGTACTTT 59.322 50.000 1.95 0.00 40.97 2.66
4464 6045 7.823745 AATGTGTGGTCTAAATATGGATTCC 57.176 36.000 0.00 0.00 0.00 3.01
4473 6054 7.012894 TCGTTTTCTGAAATGTGTGGTCTAAAT 59.987 33.333 3.31 0.00 34.18 1.40
4495 6076 6.319152 ACATAGTGTAGCTGAGATTACTCGTT 59.681 38.462 0.00 0.00 45.25 3.85
4518 6099 1.003355 GGGTAGCAGCAGCAAGACA 60.003 57.895 3.17 0.00 45.49 3.41
4519 6100 1.746991 GGGGTAGCAGCAGCAAGAC 60.747 63.158 3.17 0.00 45.49 3.01
4539 6120 3.050275 GGACCCACTTGCAGTCGC 61.050 66.667 0.00 0.00 39.24 5.19
4540 6121 2.358737 GGGACCCACTTGCAGTCG 60.359 66.667 5.33 0.00 0.00 4.18
4541 6122 0.678048 GATGGGACCCACTTGCAGTC 60.678 60.000 17.78 3.47 35.80 3.51
4542 6123 1.136329 AGATGGGACCCACTTGCAGT 61.136 55.000 17.78 0.00 35.80 4.40
4547 6128 0.916358 CCAGGAGATGGGACCCACTT 60.916 60.000 17.78 6.87 46.36 3.16
4578 6159 5.047306 CGGCAAGGTCCAGAAGTATATGATA 60.047 44.000 0.00 0.00 0.00 2.15
4583 6164 1.760613 CCGGCAAGGTCCAGAAGTATA 59.239 52.381 0.00 0.00 34.51 1.47
4659 6240 0.535102 GGAGCCGGGATTACATGGTG 60.535 60.000 2.18 0.00 0.00 4.17
4660 6241 0.986019 TGGAGCCGGGATTACATGGT 60.986 55.000 2.18 0.00 0.00 3.55
4667 6248 2.738213 GATCGCATGGAGCCGGGATT 62.738 60.000 2.18 0.00 41.38 3.01
4668 6249 3.244580 ATCGCATGGAGCCGGGAT 61.245 61.111 2.18 0.00 41.38 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.