Multiple sequence alignment - TraesCS4A01G475200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G475200 chr4A 100.000 4749 0 0 1 4749 734105708 734100960 0.000000e+00 8770.0
1 TraesCS4A01G475200 chr4A 91.729 266 21 1 63 328 101743391 101743655 7.510000e-98 368.0
2 TraesCS4A01G475200 chr4A 84.483 116 14 4 4430 4542 743641400 743641286 1.400000e-20 111.0
3 TraesCS4A01G475200 chr7A 92.105 1520 70 22 2580 4063 7497302 7498807 0.000000e+00 2097.0
4 TraesCS4A01G475200 chr7A 88.906 1262 56 36 641 1829 7495377 7496627 0.000000e+00 1478.0
5 TraesCS4A01G475200 chr7A 96.744 645 13 4 1935 2576 7496630 7497269 0.000000e+00 1068.0
6 TraesCS4A01G475200 chr7A 88.615 650 46 12 1 634 7494373 7495010 0.000000e+00 765.0
7 TraesCS4A01G475200 chr7A 83.908 522 63 8 2078 2579 7385287 7385807 3.320000e-131 479.0
8 TraesCS4A01G475200 chr7A 92.941 255 13 2 4130 4384 7498925 7499174 2.700000e-97 366.0
9 TraesCS4A01G475200 chr7A 89.474 266 27 1 64 328 718287512 718287777 7.620000e-88 335.0
10 TraesCS4A01G475200 chr7A 88.060 201 9 4 4554 4749 7499412 7499602 1.720000e-54 224.0
11 TraesCS4A01G475200 chr7A 90.184 163 14 2 2738 2899 7386329 7386490 1.340000e-50 211.0
12 TraesCS4A01G475200 chr7A 97.468 79 2 0 4096 4174 7498805 7498883 8.290000e-28 135.0
13 TraesCS4A01G475200 chr7A 95.556 45 2 0 4130 4174 7498882 7498926 6.590000e-09 73.1
14 TraesCS4A01G475200 chr5D 82.979 517 50 16 1935 2420 118847110 118847619 2.630000e-117 433.0
15 TraesCS4A01G475200 chr5D 86.649 382 34 9 1372 1749 118846084 118846452 1.590000e-109 407.0
16 TraesCS4A01G475200 chr5D 84.677 372 40 11 1380 1747 47861921 47862279 5.850000e-94 355.0
17 TraesCS4A01G475200 chr5D 90.909 264 24 0 68 331 517455179 517455442 5.850000e-94 355.0
18 TraesCS4A01G475200 chr5D 90.076 262 24 2 67 328 269336503 269336244 5.890000e-89 339.0
19 TraesCS4A01G475200 chr5D 98.095 105 2 0 1831 1935 47283998 47283894 2.920000e-42 183.0
20 TraesCS4A01G475200 chr5D 98.095 105 2 0 1831 1935 462793968 462793864 2.920000e-42 183.0
21 TraesCS4A01G475200 chr5A 82.979 517 50 16 1935 2420 128439849 128440358 2.630000e-117 433.0
22 TraesCS4A01G475200 chr5A 86.508 378 36 8 1372 1746 37979050 37979415 7.400000e-108 401.0
23 TraesCS4A01G475200 chr5A 86.423 383 33 11 1372 1749 128438823 128439191 7.400000e-108 401.0
24 TraesCS4A01G475200 chr5A 78.155 206 24 13 2670 2875 37980451 37980635 1.400000e-20 111.0
25 TraesCS4A01G475200 chr2D 81.228 570 75 17 1935 2480 8500915 8501476 9.440000e-117 431.0
26 TraesCS4A01G475200 chr2B 80.993 584 68 24 1935 2480 11292205 11292783 1.580000e-114 424.0
27 TraesCS4A01G475200 chr2B 84.821 336 35 8 1417 1749 11291228 11291550 1.650000e-84 324.0
28 TraesCS4A01G475200 chr5B 82.398 517 53 16 1935 2420 130934437 130934946 2.640000e-112 416.0
29 TraesCS4A01G475200 chr5B 86.126 382 36 9 1372 1749 130933410 130933778 3.440000e-106 396.0
30 TraesCS4A01G475200 chr5B 85.714 371 38 8 1380 1747 50514795 50515153 1.250000e-100 377.0
31 TraesCS4A01G475200 chr2A 80.541 591 65 24 1935 2480 7550524 7551109 4.420000e-110 409.0
32 TraesCS4A01G475200 chr2A 83.333 336 34 10 1417 1749 7549550 7549866 1.670000e-74 291.0
33 TraesCS4A01G475200 chr2A 76.923 208 23 14 2670 2873 7550923 7551109 1.410000e-15 95.3
34 TraesCS4A01G475200 chr4D 91.729 266 21 1 63 328 363683974 363683710 7.510000e-98 368.0
35 TraesCS4A01G475200 chr6D 90.530 264 24 1 65 328 25991706 25991444 9.780000e-92 348.0
36 TraesCS4A01G475200 chr6D 95.536 112 5 0 1824 1935 420763931 420763820 3.780000e-41 180.0
37 TraesCS4A01G475200 chr3B 90.421 261 23 1 64 322 6164330 6164590 4.550000e-90 342.0
38 TraesCS4A01G475200 chr3B 94.017 117 5 1 1826 1940 740910728 740910612 4.880000e-40 176.0
39 TraesCS4A01G475200 chr7D 90.038 261 25 1 68 328 398325708 398325967 2.120000e-88 337.0
40 TraesCS4A01G475200 chr7D 75.127 591 140 7 3094 3679 6013385 6013973 2.180000e-68 270.0
41 TraesCS4A01G475200 chr7D 94.253 87 5 0 1743 1829 6012407 6012493 2.980000e-27 134.0
42 TraesCS4A01G475200 chr7D 94.366 71 4 0 1 71 6009194 6009264 5.020000e-20 110.0
43 TraesCS4A01G475200 chr7D 95.122 41 2 0 2738 2778 6012965 6013005 1.100000e-06 65.8
44 TraesCS4A01G475200 chr1B 95.652 115 4 1 1826 1939 117290344 117290458 2.920000e-42 183.0
45 TraesCS4A01G475200 chr4B 96.364 110 4 0 1826 1935 598165586 598165695 1.050000e-41 182.0
46 TraesCS4A01G475200 chr4B 95.536 112 5 0 1824 1935 512739940 512740051 3.780000e-41 180.0
47 TraesCS4A01G475200 chr4B 94.737 114 6 0 1822 1935 545037171 545037284 1.360000e-40 178.0
48 TraesCS4A01G475200 chr7B 94.783 115 5 1 1820 1934 535690739 535690852 1.360000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G475200 chr4A 734100960 734105708 4748 True 8770.0000 8770 100.000000 1 4749 1 chr4A.!!$R1 4748
1 TraesCS4A01G475200 chr7A 7494373 7499602 5229 False 775.7625 2097 92.549375 1 4749 8 chr7A.!!$F3 4748
2 TraesCS4A01G475200 chr7A 7385287 7386490 1203 False 345.0000 479 87.046000 2078 2899 2 chr7A.!!$F2 821
3 TraesCS4A01G475200 chr5D 118846084 118847619 1535 False 420.0000 433 84.814000 1372 2420 2 chr5D.!!$F3 1048
4 TraesCS4A01G475200 chr5A 128438823 128440358 1535 False 417.0000 433 84.701000 1372 2420 2 chr5A.!!$F2 1048
5 TraesCS4A01G475200 chr5A 37979050 37980635 1585 False 256.0000 401 82.331500 1372 2875 2 chr5A.!!$F1 1503
6 TraesCS4A01G475200 chr2D 8500915 8501476 561 False 431.0000 431 81.228000 1935 2480 1 chr2D.!!$F1 545
7 TraesCS4A01G475200 chr2B 11291228 11292783 1555 False 374.0000 424 82.907000 1417 2480 2 chr2B.!!$F1 1063
8 TraesCS4A01G475200 chr5B 130933410 130934946 1536 False 406.0000 416 84.262000 1372 2420 2 chr5B.!!$F2 1048
9 TraesCS4A01G475200 chr2A 7549550 7551109 1559 False 265.1000 409 80.265667 1417 2873 3 chr2A.!!$F1 1456

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 1332 0.452585 GAAGGTTCTCGAGAGGTCGG 59.547 60.0 15.94 0.0 46.80 4.79 F
1099 1524 0.537653 GGCGAAGGGCTTCTCTACTT 59.462 55.0 0.00 0.0 42.94 2.24 F
1850 2888 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.0 5.23 0.0 44.66 2.24 F
1851 2889 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.0 5.23 0.0 44.66 2.24 F
3295 5138 0.184451 AATGCCTTGCGGAGATCCAT 59.816 50.0 0.00 0.0 35.14 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1831 2869 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.0 13.64 0.0 46.06 4.20 R
1931 2969 0.107459 GCTGTGGGAGATCCTTGTCC 60.107 60.0 0.00 0.0 34.50 4.02 R
3206 5049 0.099082 GTCTCCTCGTCGATCACCAC 59.901 60.0 0.00 0.0 0.00 4.16 R
3693 5536 0.110104 AAGCTTGTCCTTGAGCAGCT 59.890 50.0 0.00 0.0 41.31 4.24 R
4423 6534 0.036010 AGTTTGTCGGCATCTCAGGG 60.036 55.0 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.932610 AGATATTGATCCAATACAAGTGTCTCT 58.067 33.333 1.95 0.00 38.83 3.10
92 96 6.536447 ACTCCCTTCGTTTTTATTTACTCCA 58.464 36.000 0.00 0.00 0.00 3.86
107 111 6.693315 TTTACTCCACATATTAGCTTTGGC 57.307 37.500 0.00 0.00 39.06 4.52
137 141 9.443323 AGTAAAACTTTGTAAACTTTGGCAAAT 57.557 25.926 13.89 1.12 31.60 2.32
187 192 9.985730 ATACAATAACAAATCAATGCCATTAGG 57.014 29.630 0.00 0.00 38.23 2.69
195 200 8.707449 ACAAATCAATGCCATTAGGTTCATTAT 58.293 29.630 0.00 0.00 37.19 1.28
368 373 9.757227 TTAAGTTCCATTAATTTGAAGTGGTTG 57.243 29.630 5.86 0.00 0.00 3.77
369 374 7.360113 AGTTCCATTAATTTGAAGTGGTTGT 57.640 32.000 4.69 0.00 0.00 3.32
371 376 8.919145 AGTTCCATTAATTTGAAGTGGTTGTTA 58.081 29.630 4.69 0.00 0.00 2.41
372 377 8.974408 GTTCCATTAATTTGAAGTGGTTGTTAC 58.026 33.333 0.00 0.00 0.00 2.50
373 378 8.239038 TCCATTAATTTGAAGTGGTTGTTACA 57.761 30.769 0.00 0.00 0.00 2.41
374 379 8.138712 TCCATTAATTTGAAGTGGTTGTTACAC 58.861 33.333 0.00 0.00 39.10 2.90
384 389 5.850614 AGTGGTTGTTACACTTAGACGAAT 58.149 37.500 0.00 0.00 46.38 3.34
385 390 6.985117 AGTGGTTGTTACACTTAGACGAATA 58.015 36.000 0.00 0.00 46.38 1.75
523 538 2.728690 TTTGACTAGAACGGCGCTTA 57.271 45.000 6.90 0.00 0.00 3.09
525 540 2.728690 TGACTAGAACGGCGCTTAAA 57.271 45.000 6.90 0.00 0.00 1.52
526 541 3.029320 TGACTAGAACGGCGCTTAAAA 57.971 42.857 6.90 0.00 0.00 1.52
614 630 1.425066 AGGAACTTCACAAGGATGGCA 59.575 47.619 0.00 0.00 27.25 4.92
624 640 2.091720 ACAAGGATGGCATGGCTCATTA 60.092 45.455 21.08 0.00 0.00 1.90
634 650 5.046735 TGGCATGGCTCATTAAAGCTAAAAA 60.047 36.000 21.08 0.00 42.13 1.94
668 1045 1.873698 TGTAGACGGGTGTTTTCTGC 58.126 50.000 0.00 0.00 0.00 4.26
692 1069 6.737720 TGATCTAGCCTTCAATGTGATAGT 57.262 37.500 0.00 0.00 0.00 2.12
693 1070 7.129457 TGATCTAGCCTTCAATGTGATAGTT 57.871 36.000 0.00 0.00 0.00 2.24
694 1071 7.568349 TGATCTAGCCTTCAATGTGATAGTTT 58.432 34.615 0.00 0.00 0.00 2.66
695 1072 7.712639 TGATCTAGCCTTCAATGTGATAGTTTC 59.287 37.037 0.00 0.00 0.00 2.78
696 1073 7.187824 TCTAGCCTTCAATGTGATAGTTTCT 57.812 36.000 0.00 0.00 0.00 2.52
697 1074 7.624549 TCTAGCCTTCAATGTGATAGTTTCTT 58.375 34.615 0.00 0.00 0.00 2.52
698 1075 6.506500 AGCCTTCAATGTGATAGTTTCTTG 57.493 37.500 0.00 0.00 0.00 3.02
802 1209 4.207165 ACCATAGCCGTAAAAATGCTCAT 58.793 39.130 0.00 0.00 36.57 2.90
806 1213 6.636850 CCATAGCCGTAAAAATGCTCATAAAC 59.363 38.462 0.00 0.00 36.57 2.01
813 1220 7.759433 CCGTAAAAATGCTCATAAACAAAGGAT 59.241 33.333 0.00 0.00 0.00 3.24
856 1263 3.821033 CCCAGTAGCAATAGCCCATTAAC 59.179 47.826 0.00 0.00 43.56 2.01
857 1264 4.460263 CCAGTAGCAATAGCCCATTAACA 58.540 43.478 0.00 0.00 43.56 2.41
858 1265 4.887071 CCAGTAGCAATAGCCCATTAACAA 59.113 41.667 0.00 0.00 43.56 2.83
859 1266 5.221048 CCAGTAGCAATAGCCCATTAACAAC 60.221 44.000 0.00 0.00 43.56 3.32
916 1323 3.526534 GGAGAATTCCAGAAGGTTCTCG 58.473 50.000 13.60 0.00 43.17 4.04
925 1332 0.452585 GAAGGTTCTCGAGAGGTCGG 59.547 60.000 15.94 0.00 46.80 4.79
948 1355 1.850345 GAGAAGAGAGGGAGAGGAGGA 59.150 57.143 0.00 0.00 0.00 3.71
959 1366 0.686112 AGAGGAGGAGAAGGAAGCCG 60.686 60.000 0.00 0.00 0.00 5.52
960 1367 2.188207 GGAGGAGAAGGAAGCCGC 59.812 66.667 0.00 0.00 0.00 6.53
961 1368 2.188207 GAGGAGAAGGAAGCCGCC 59.812 66.667 0.00 0.00 0.00 6.13
1098 1523 1.668101 CGGCGAAGGGCTTCTCTACT 61.668 60.000 0.00 0.00 42.94 2.57
1099 1524 0.537653 GGCGAAGGGCTTCTCTACTT 59.462 55.000 0.00 0.00 42.94 2.24
1141 1566 1.374252 AGCAAGACCGCCGTAAGTG 60.374 57.895 0.00 0.00 0.00 3.16
1250 1675 2.045536 CCCTGCAGAGAAGGCACC 60.046 66.667 17.39 0.00 36.11 5.01
1309 1734 4.854173 TGCTAATTTATGTGCTTGAGGGA 58.146 39.130 0.00 0.00 0.00 4.20
1336 1768 2.979813 GGCGTGCAACAGTGAAAATTAG 59.020 45.455 0.00 0.00 35.74 1.73
1337 1769 3.550030 GGCGTGCAACAGTGAAAATTAGT 60.550 43.478 0.00 0.00 35.74 2.24
1343 1775 6.019075 GTGCAACAGTGAAAATTAGTTTTCCC 60.019 38.462 17.73 8.91 43.69 3.97
1348 1780 5.922544 CAGTGAAAATTAGTTTTCCCTGCTG 59.077 40.000 18.10 15.74 45.77 4.41
1349 1781 6.239008 CAGTGAAAATTAGTTTTCCCTGCTGA 60.239 38.462 18.10 0.00 45.77 4.26
1370 1802 8.533657 TGCTGATTGATGAAATATTTTCCTTGT 58.466 29.630 1.43 0.00 0.00 3.16
1456 1892 0.971959 TGCCTCAATTGTCCCATGGC 60.972 55.000 6.09 10.78 39.33 4.40
1513 1950 3.057315 CAGATGGTGGCGACTTCAATTTT 60.057 43.478 0.00 0.00 0.00 1.82
1553 1990 0.673022 GCCTGAGGCTTCTGTCTGTG 60.673 60.000 17.96 0.00 46.69 3.66
1569 2006 2.355756 TCTGTGTGAAGCTTTGCTCAAC 59.644 45.455 0.00 0.00 38.25 3.18
1586 2023 4.005650 CTCAACTTAGCATTCTCCTTGCA 58.994 43.478 0.00 0.00 42.62 4.08
1646 2085 9.328845 GATGAAATATTCTGAGAAGAGAGCTTT 57.671 33.333 0.00 0.00 33.61 3.51
1674 2136 0.606604 TGTCCCTCCTTTAGTGTCGC 59.393 55.000 0.00 0.00 0.00 5.19
1679 2141 2.227089 CTCCTTTAGTGTCGCGGGCT 62.227 60.000 6.13 4.67 0.00 5.19
1698 2160 4.229876 GGCTGCAACTTATGTGAAAACTC 58.770 43.478 0.50 0.00 0.00 3.01
1831 2869 3.004734 GCCTGTTTAGTTTGTGATGTGCT 59.995 43.478 0.00 0.00 0.00 4.40
1832 2870 4.787598 CCTGTTTAGTTTGTGATGTGCTC 58.212 43.478 0.00 0.00 0.00 4.26
1833 2871 4.320494 CCTGTTTAGTTTGTGATGTGCTCC 60.320 45.833 0.00 0.00 0.00 4.70
1834 2872 3.568007 TGTTTAGTTTGTGATGTGCTCCC 59.432 43.478 0.00 0.00 0.00 4.30
1835 2873 3.788227 TTAGTTTGTGATGTGCTCCCT 57.212 42.857 0.00 0.00 0.00 4.20
1836 2874 2.191128 AGTTTGTGATGTGCTCCCTC 57.809 50.000 0.00 0.00 0.00 4.30
1837 2875 1.168714 GTTTGTGATGTGCTCCCTCC 58.831 55.000 0.00 0.00 0.00 4.30
1838 2876 0.321564 TTTGTGATGTGCTCCCTCCG 60.322 55.000 0.00 0.00 0.00 4.63
1839 2877 1.480212 TTGTGATGTGCTCCCTCCGT 61.480 55.000 0.00 0.00 0.00 4.69
1840 2878 1.153549 GTGATGTGCTCCCTCCGTC 60.154 63.158 0.00 0.00 0.00 4.79
1841 2879 2.359169 TGATGTGCTCCCTCCGTCC 61.359 63.158 0.00 0.00 0.00 4.79
1842 2880 3.432051 GATGTGCTCCCTCCGTCCG 62.432 68.421 0.00 0.00 0.00 4.79
1845 2883 4.689549 TGCTCCCTCCGTCCGGAA 62.690 66.667 5.23 0.00 44.66 4.30
1846 2884 3.155167 GCTCCCTCCGTCCGGAAT 61.155 66.667 5.23 0.00 44.66 3.01
1847 2885 2.732619 GCTCCCTCCGTCCGGAATT 61.733 63.158 5.23 0.00 44.66 2.17
1848 2886 1.397390 GCTCCCTCCGTCCGGAATTA 61.397 60.000 5.23 0.00 44.66 1.40
1849 2887 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
1850 2888 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
1851 2889 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
1852 2890 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1853 2891 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1854 2892 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1855 2893 1.894466 TCCGTCCGGAATTACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1856 2894 2.498481 TCCGTCCGGAATTACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1857 2895 2.864343 CCGTCCGGAATTACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1858 2896 3.517602 CGTCCGGAATTACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1859 2897 3.930229 CGTCCGGAATTACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
1860 2898 4.390603 CGTCCGGAATTACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
1861 2899 5.106869 CGTCCGGAATTACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
1862 2900 6.403200 CGTCCGGAATTACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
1863 2901 7.312899 GTCCGGAATTACTTGTCATCAAAATT 58.687 34.615 5.23 0.00 31.07 1.82
1864 2902 7.273381 GTCCGGAATTACTTGTCATCAAAATTG 59.727 37.037 5.23 0.00 29.58 2.32
1865 2903 7.175816 TCCGGAATTACTTGTCATCAAAATTGA 59.824 33.333 0.00 0.00 42.14 2.57
1888 2926 9.685276 TTGATGAAAATGGATGTATCTACAACT 57.315 29.630 0.00 0.00 39.99 3.16
1930 2968 9.643693 ACATTCATTTCAATGACAAGTATTTCC 57.356 29.630 1.52 0.00 44.54 3.13
1931 2969 8.800972 CATTCATTTCAATGACAAGTATTTCCG 58.199 33.333 1.52 0.00 44.54 4.30
1932 2970 6.851609 TCATTTCAATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 40.32 5.14
1933 2971 6.657117 TCATTTCAATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 40.32 5.14
1955 2995 1.202330 AGGATCTCCCACAGCTTCAG 58.798 55.000 0.00 0.00 37.41 3.02
1961 3001 1.673665 CCCACAGCTTCAGCCTGAC 60.674 63.158 0.00 0.00 43.38 3.51
2029 3069 2.652172 GCGCTTTCGTTTTGAACTCATC 59.348 45.455 0.00 0.00 35.97 2.92
2049 3089 2.099592 TCAAGGCTGACTTTTGCAGTTG 59.900 45.455 0.00 0.00 37.29 3.16
2197 3245 2.047939 GCCATGGTTTGCAGCCAC 60.048 61.111 14.67 0.00 39.03 5.01
2202 3250 2.521708 GGTTTGCAGCCACACCCT 60.522 61.111 4.72 0.00 36.09 4.34
2320 3421 2.626743 GGAAGAGGGATGCCAATTGATG 59.373 50.000 7.12 0.00 0.00 3.07
2497 4307 9.173021 CACAGGAAGTTGTTCACCATTATATTA 57.827 33.333 0.00 0.00 33.93 0.98
2572 4383 8.025445 CAGTTTTTGCATCTATCTTAGCACTTT 58.975 33.333 0.00 0.00 36.62 2.66
2602 4442 3.867857 TCTGTGTTGTTGCAGTCACTTA 58.132 40.909 11.62 1.45 34.57 2.24
2603 4443 4.257731 TCTGTGTTGTTGCAGTCACTTAA 58.742 39.130 11.62 0.00 34.57 1.85
2755 4597 3.630769 ACTCCAGCATAATGCATGAGTTG 59.369 43.478 0.00 1.51 46.82 3.16
2791 4634 5.827797 TGTGAAAGAACAGCTAACCTGAAAT 59.172 36.000 0.00 0.00 44.64 2.17
2921 4764 9.812347 ATTGCTATGGTTTGGATTAGATATCAA 57.188 29.630 5.32 0.00 0.00 2.57
2922 4765 9.812347 TTGCTATGGTTTGGATTAGATATCAAT 57.188 29.630 5.32 3.05 0.00 2.57
2953 4796 5.143376 AGCTTGCTGTTTTTGCATCTATT 57.857 34.783 0.00 0.00 40.34 1.73
3007 4850 3.240606 CTCGGTGTTGTTGCAGGCG 62.241 63.158 0.00 0.00 0.00 5.52
3056 4899 3.084579 CAAGCAGCCTCGTTAGCG 58.915 61.111 0.00 0.00 39.92 4.26
3087 4930 1.885887 TCAGCAGGTTGGTAATTGTGC 59.114 47.619 0.00 0.00 0.00 4.57
3091 4934 2.817258 GCAGGTTGGTAATTGTGCTGTA 59.183 45.455 0.00 0.00 0.00 2.74
3109 4952 2.831526 TGTAGTTCACATGAGCAGCCTA 59.168 45.455 0.00 0.00 30.04 3.93
3116 4959 3.018856 CACATGAGCAGCCTATTTTGGA 58.981 45.455 0.00 0.00 0.00 3.53
3187 5030 1.134175 ACTGTTTTGTTTCAGGCACGG 59.866 47.619 0.00 0.00 36.17 4.94
3189 5032 2.356382 CTGTTTTGTTTCAGGCACGGTA 59.644 45.455 0.00 0.00 0.00 4.02
3199 5042 1.141234 GGCACGGTACTACTCAGCC 59.859 63.158 0.00 0.00 0.00 4.85
3277 5120 3.636300 AGTGTAATTCAGTGGCAAGCAAA 59.364 39.130 0.00 0.00 0.00 3.68
3295 5138 0.184451 AATGCCTTGCGGAGATCCAT 59.816 50.000 0.00 0.00 35.14 3.41
3304 5147 0.319040 CGGAGATCCATACGGTGCAG 60.319 60.000 0.00 0.00 35.14 4.41
3322 5165 3.984508 CAGGATCTGCAAATCATCACC 57.015 47.619 1.78 0.00 0.00 4.02
3325 5168 2.883386 GGATCTGCAAATCATCACCCTC 59.117 50.000 1.78 0.00 0.00 4.30
3326 5169 3.548770 GATCTGCAAATCATCACCCTCA 58.451 45.455 0.00 0.00 0.00 3.86
3343 5186 3.828451 CCCTCATTGTCATTTTGTCTGGT 59.172 43.478 0.00 0.00 0.00 4.00
3344 5187 5.009631 CCCTCATTGTCATTTTGTCTGGTA 58.990 41.667 0.00 0.00 0.00 3.25
3348 5191 6.389091 TCATTGTCATTTTGTCTGGTATTGC 58.611 36.000 0.00 0.00 0.00 3.56
3364 5207 4.123545 GCGGGGGCCTGGTATGTT 62.124 66.667 0.84 0.00 0.00 2.71
3385 5228 4.200838 TGGACAGCAAGTAATTGATCGA 57.799 40.909 7.18 0.00 0.00 3.59
3391 5234 3.452627 AGCAAGTAATTGATCGAGGGTCT 59.547 43.478 7.18 0.00 0.00 3.85
3403 5246 1.383803 AGGGTCTGAGATCCTGGGC 60.384 63.158 14.74 0.00 42.30 5.36
3438 5281 3.518068 CCCGGAAATCTTGGGCGC 61.518 66.667 0.73 0.00 35.82 6.53
3475 5318 2.158943 GGTGTACCAGCTGAAGATACCC 60.159 54.545 17.39 10.93 35.64 3.69
3487 5330 0.548510 AGATACCCTTCCTTGGCAGC 59.451 55.000 0.00 0.00 0.00 5.25
3523 5366 3.896888 TCTTGCAAGACCATTGGTTCAAT 59.103 39.130 25.16 0.00 35.25 2.57
3610 5453 2.697761 CCGGCTTCGACTCGAGGAA 61.698 63.158 18.41 10.46 37.14 3.36
3616 5459 3.190874 GCTTCGACTCGAGGAATTCAAT 58.809 45.455 18.41 0.00 37.14 2.57
3693 5536 0.748450 AGGAAACGAGTCAACGACCA 59.252 50.000 0.00 0.00 37.03 4.02
3728 5571 2.303175 AGCTTCGTGAGGAGAGGATAC 58.697 52.381 0.00 0.00 39.93 2.24
3729 5572 1.002251 GCTTCGTGAGGAGAGGATACG 60.002 57.143 0.00 0.00 39.93 3.06
3756 5599 1.379977 CGGGACAGTAGGAGGCAGA 60.380 63.158 0.00 0.00 0.00 4.26
3776 5619 2.667536 CAGCAGCTGAGCGGTTGT 60.668 61.111 20.43 0.00 40.15 3.32
3777 5620 2.667536 AGCAGCTGAGCGGTTGTG 60.668 61.111 20.43 0.00 40.15 3.33
3778 5621 2.666190 GCAGCTGAGCGGTTGTGA 60.666 61.111 20.43 0.00 0.00 3.58
3779 5622 2.037136 GCAGCTGAGCGGTTGTGAT 61.037 57.895 20.43 0.00 0.00 3.06
3792 5635 2.035832 GGTTGTGATGGACCTGGTTTTG 59.964 50.000 0.00 0.00 33.08 2.44
3793 5636 2.955660 GTTGTGATGGACCTGGTTTTGA 59.044 45.455 0.00 0.00 0.00 2.69
3800 5657 6.015918 TGATGGACCTGGTTTTGACATATTT 58.984 36.000 0.00 0.00 0.00 1.40
3805 5662 5.304778 ACCTGGTTTTGACATATTTTTGCC 58.695 37.500 0.00 0.00 0.00 4.52
3827 5685 5.351458 CCCTGGACTATTAATTTTGCTTGC 58.649 41.667 0.00 0.00 0.00 4.01
3830 5688 6.207691 TGGACTATTAATTTTGCTTGCTCC 57.792 37.500 0.00 0.00 0.00 4.70
3843 5701 0.401738 TTGCTCCTCCCTTTGTCTGG 59.598 55.000 0.00 0.00 0.00 3.86
3847 5705 1.003696 CTCCTCCCTTTGTCTGGTTCC 59.996 57.143 0.00 0.00 0.00 3.62
3859 5717 2.614057 GTCTGGTTCCAAACTGTCTGTG 59.386 50.000 0.00 0.00 0.00 3.66
3895 5753 9.109393 TGATTAGTCAGCTTTGAAATGGTATAC 57.891 33.333 0.00 0.00 0.00 1.47
3974 5847 4.467438 TGATGGAATGTCAAGTCTGCTCTA 59.533 41.667 0.00 0.00 0.00 2.43
3982 5855 6.530019 TGTCAAGTCTGCTCTATTGTATGA 57.470 37.500 0.00 0.00 0.00 2.15
4012 5885 6.449956 ACCTAGGACTGTATCTTATTGGGAA 58.550 40.000 17.98 0.00 0.00 3.97
4142 6018 2.108970 AGGGCACTGCTAGGTAGTTAC 58.891 52.381 0.00 0.00 0.00 2.50
4143 6019 1.138464 GGGCACTGCTAGGTAGTTACC 59.862 57.143 0.00 0.00 46.82 2.85
4206 6168 2.644992 CACGGCCAAAGCTTCACC 59.355 61.111 2.24 0.36 39.73 4.02
4225 6187 3.495001 CACCGAAGAAAGGTTCTCTCAAC 59.505 47.826 0.00 0.00 40.59 3.18
4227 6189 4.127171 CCGAAGAAAGGTTCTCTCAACAA 58.873 43.478 0.00 0.00 39.61 2.83
4262 6224 2.870411 GCACGGTTCAGTTAAGTTCAGT 59.130 45.455 0.00 0.00 0.00 3.41
4263 6225 3.311596 GCACGGTTCAGTTAAGTTCAGTT 59.688 43.478 0.00 0.00 0.00 3.16
4264 6226 4.552184 GCACGGTTCAGTTAAGTTCAGTTC 60.552 45.833 0.00 0.00 0.00 3.01
4265 6227 4.569162 CACGGTTCAGTTAAGTTCAGTTCA 59.431 41.667 0.00 0.00 0.00 3.18
4266 6228 4.809426 ACGGTTCAGTTAAGTTCAGTTCAG 59.191 41.667 0.00 0.00 0.00 3.02
4267 6229 4.809426 CGGTTCAGTTAAGTTCAGTTCAGT 59.191 41.667 0.00 0.00 0.00 3.41
4268 6230 5.293569 CGGTTCAGTTAAGTTCAGTTCAGTT 59.706 40.000 0.00 0.00 0.00 3.16
4296 6258 0.179000 GTGCAGATGGTCCGAGGAAT 59.821 55.000 0.00 0.00 0.00 3.01
4309 6271 2.037772 CCGAGGAATGAACTGGGGATAG 59.962 54.545 0.00 0.00 31.03 2.08
4375 6418 7.042658 GCCGACAAAGTTGAGTTATAATAGAGG 60.043 40.741 0.00 0.00 0.00 3.69
4379 6422 9.668497 ACAAAGTTGAGTTATAATAGAGGAACC 57.332 33.333 0.00 0.00 0.00 3.62
4384 6427 3.581770 AGTTATAATAGAGGAACCGGGGC 59.418 47.826 6.32 0.00 0.00 5.80
4385 6428 2.112279 ATAATAGAGGAACCGGGGCA 57.888 50.000 6.32 0.00 0.00 5.36
4416 6527 4.761975 AGTTAAAGTGAAGACCAACGACA 58.238 39.130 0.00 0.00 0.00 4.35
4417 6528 5.180271 AGTTAAAGTGAAGACCAACGACAA 58.820 37.500 0.00 0.00 0.00 3.18
4418 6529 5.644636 AGTTAAAGTGAAGACCAACGACAAA 59.355 36.000 0.00 0.00 0.00 2.83
4419 6530 4.351131 AAAGTGAAGACCAACGACAAAC 57.649 40.909 0.00 0.00 0.00 2.93
4420 6531 2.980568 AGTGAAGACCAACGACAAACA 58.019 42.857 0.00 0.00 0.00 2.83
4421 6532 2.676342 AGTGAAGACCAACGACAAACAC 59.324 45.455 0.00 0.00 0.00 3.32
4422 6533 2.011222 TGAAGACCAACGACAAACACC 58.989 47.619 0.00 0.00 0.00 4.16
4423 6534 1.332686 GAAGACCAACGACAAACACCC 59.667 52.381 0.00 0.00 0.00 4.61
4424 6535 0.464916 AGACCAACGACAAACACCCC 60.465 55.000 0.00 0.00 0.00 4.95
4425 6536 1.449726 GACCAACGACAAACACCCCC 61.450 60.000 0.00 0.00 0.00 5.40
4426 6537 1.152839 CCAACGACAAACACCCCCT 60.153 57.895 0.00 0.00 0.00 4.79
4427 6538 1.452145 CCAACGACAAACACCCCCTG 61.452 60.000 0.00 0.00 0.00 4.45
4428 6539 0.464735 CAACGACAAACACCCCCTGA 60.465 55.000 0.00 0.00 0.00 3.86
4456 6578 9.609346 ATGCCGACAAACTTTAGTTATAATAGT 57.391 29.630 0.00 0.00 37.25 2.12
4479 6601 4.628074 AGCATGATGGCTAATGAAAATGC 58.372 39.130 0.00 0.00 43.70 3.56
4480 6602 3.427528 GCATGATGGCTAATGAAAATGCG 59.572 43.478 0.00 0.00 30.98 4.73
4481 6603 4.793678 GCATGATGGCTAATGAAAATGCGA 60.794 41.667 0.00 0.00 30.98 5.10
4482 6604 4.979943 TGATGGCTAATGAAAATGCGAA 57.020 36.364 0.00 0.00 0.00 4.70
4483 6605 5.321959 TGATGGCTAATGAAAATGCGAAA 57.678 34.783 0.00 0.00 0.00 3.46
4484 6606 5.904941 TGATGGCTAATGAAAATGCGAAAT 58.095 33.333 0.00 0.00 0.00 2.17
4485 6607 7.036996 TGATGGCTAATGAAAATGCGAAATA 57.963 32.000 0.00 0.00 0.00 1.40
4486 6608 7.487484 TGATGGCTAATGAAAATGCGAAATAA 58.513 30.769 0.00 0.00 0.00 1.40
4487 6609 7.978414 TGATGGCTAATGAAAATGCGAAATAAA 59.022 29.630 0.00 0.00 0.00 1.40
4488 6610 7.754069 TGGCTAATGAAAATGCGAAATAAAG 57.246 32.000 0.00 0.00 0.00 1.85
4489 6611 7.542890 TGGCTAATGAAAATGCGAAATAAAGA 58.457 30.769 0.00 0.00 0.00 2.52
4490 6612 8.196771 TGGCTAATGAAAATGCGAAATAAAGAT 58.803 29.630 0.00 0.00 0.00 2.40
4491 6613 9.034544 GGCTAATGAAAATGCGAAATAAAGATT 57.965 29.630 0.00 0.00 0.00 2.40
4505 6627 7.759489 AAATAAAGATTTCAGCCAGTACACA 57.241 32.000 0.00 0.00 28.60 3.72
4506 6628 7.944729 AATAAAGATTTCAGCCAGTACACAT 57.055 32.000 0.00 0.00 0.00 3.21
4507 6629 5.886960 AAAGATTTCAGCCAGTACACATC 57.113 39.130 0.00 0.00 0.00 3.06
4508 6630 4.558226 AGATTTCAGCCAGTACACATCA 57.442 40.909 0.00 0.00 0.00 3.07
4509 6631 5.108187 AGATTTCAGCCAGTACACATCAT 57.892 39.130 0.00 0.00 0.00 2.45
4510 6632 5.503927 AGATTTCAGCCAGTACACATCATT 58.496 37.500 0.00 0.00 0.00 2.57
4511 6633 5.356190 AGATTTCAGCCAGTACACATCATTG 59.644 40.000 0.00 0.00 0.00 2.82
4512 6634 2.989909 TCAGCCAGTACACATCATTGG 58.010 47.619 0.00 0.00 0.00 3.16
4516 6638 1.402968 CCAGTACACATCATTGGCTGC 59.597 52.381 0.00 0.00 0.00 5.25
4517 6639 1.402968 CAGTACACATCATTGGCTGCC 59.597 52.381 12.87 12.87 0.00 4.85
4518 6640 1.004628 AGTACACATCATTGGCTGCCA 59.995 47.619 19.30 19.30 0.00 4.92
4519 6641 1.133025 GTACACATCATTGGCTGCCAC 59.867 52.381 23.30 1.38 30.78 5.01
4520 6642 0.540133 ACACATCATTGGCTGCCACA 60.540 50.000 23.30 13.24 30.78 4.17
4521 6643 0.172578 CACATCATTGGCTGCCACAG 59.827 55.000 23.30 16.76 30.78 3.66
4522 6644 0.251474 ACATCATTGGCTGCCACAGT 60.251 50.000 23.30 12.41 33.43 3.55
4523 6645 0.892755 CATCATTGGCTGCCACAGTT 59.107 50.000 23.30 9.00 33.43 3.16
4524 6646 2.093890 CATCATTGGCTGCCACAGTTA 58.906 47.619 23.30 6.68 33.43 2.24
4525 6647 1.825090 TCATTGGCTGCCACAGTTAG 58.175 50.000 23.30 7.80 33.43 2.34
4526 6648 0.171903 CATTGGCTGCCACAGTTAGC 59.828 55.000 23.30 0.00 36.74 3.09
4527 6649 0.251297 ATTGGCTGCCACAGTTAGCA 60.251 50.000 23.30 4.07 39.15 3.49
4531 6653 4.896402 TGCCACAGTTAGCAGCAA 57.104 50.000 0.00 0.00 33.08 3.91
4532 6654 2.330254 TGCCACAGTTAGCAGCAAC 58.670 52.632 0.00 0.00 33.08 4.17
4533 6655 1.207593 GCCACAGTTAGCAGCAACG 59.792 57.895 0.00 0.00 33.50 4.10
4534 6656 1.868997 CCACAGTTAGCAGCAACGG 59.131 57.895 0.00 0.91 33.50 4.44
4535 6657 0.602638 CCACAGTTAGCAGCAACGGA 60.603 55.000 12.34 0.00 33.50 4.69
4536 6658 1.225855 CACAGTTAGCAGCAACGGAA 58.774 50.000 12.34 0.00 33.50 4.30
4537 6659 1.806542 CACAGTTAGCAGCAACGGAAT 59.193 47.619 12.34 0.00 33.50 3.01
4538 6660 3.000041 CACAGTTAGCAGCAACGGAATA 59.000 45.455 12.34 0.00 33.50 1.75
4539 6661 3.435327 CACAGTTAGCAGCAACGGAATAA 59.565 43.478 12.34 0.00 33.50 1.40
4540 6662 4.094887 CACAGTTAGCAGCAACGGAATAAT 59.905 41.667 12.34 0.00 33.50 1.28
4541 6663 4.094887 ACAGTTAGCAGCAACGGAATAATG 59.905 41.667 12.34 3.55 33.50 1.90
4542 6664 4.332543 CAGTTAGCAGCAACGGAATAATGA 59.667 41.667 0.00 0.00 33.50 2.57
4543 6665 4.332819 AGTTAGCAGCAACGGAATAATGAC 59.667 41.667 0.00 0.00 33.50 3.06
4544 6666 2.017049 AGCAGCAACGGAATAATGACC 58.983 47.619 0.00 0.00 0.00 4.02
4545 6667 2.017049 GCAGCAACGGAATAATGACCT 58.983 47.619 0.00 0.00 0.00 3.85
4546 6668 2.032178 GCAGCAACGGAATAATGACCTC 59.968 50.000 0.00 0.00 0.00 3.85
4547 6669 2.614057 CAGCAACGGAATAATGACCTCC 59.386 50.000 0.00 0.00 0.00 4.30
4548 6670 2.505819 AGCAACGGAATAATGACCTCCT 59.494 45.455 0.00 0.00 0.00 3.69
4549 6671 2.614057 GCAACGGAATAATGACCTCCTG 59.386 50.000 0.00 0.00 0.00 3.86
4550 6672 3.873910 CAACGGAATAATGACCTCCTGT 58.126 45.455 0.00 0.00 0.00 4.00
4551 6673 3.821421 ACGGAATAATGACCTCCTGTC 57.179 47.619 0.00 0.00 44.72 3.51
4552 6674 2.434702 ACGGAATAATGACCTCCTGTCC 59.565 50.000 0.00 0.00 43.78 4.02
4595 6717 3.011818 TCCACAGACATGCATCATTCAC 58.988 45.455 0.00 0.00 0.00 3.18
4613 6740 9.959721 ATCATTCACTAGTACCAAAAGTATGTT 57.040 29.630 0.00 0.00 32.28 2.71
4614 6741 9.214957 TCATTCACTAGTACCAAAAGTATGTTG 57.785 33.333 0.00 0.00 32.28 3.33
4615 6742 8.999431 CATTCACTAGTACCAAAAGTATGTTGT 58.001 33.333 0.00 0.00 28.83 3.32
4618 6745 8.863086 TCACTAGTACCAAAAGTATGTTGTACT 58.137 33.333 0.00 0.00 35.66 2.73
4619 6746 9.485206 CACTAGTACCAAAAGTATGTTGTACTT 57.515 33.333 0.00 0.00 39.24 2.24
4620 6747 9.485206 ACTAGTACCAAAAGTATGTTGTACTTG 57.515 33.333 0.00 6.51 37.77 3.16
4621 6748 7.739498 AGTACCAAAAGTATGTTGTACTTGG 57.261 36.000 1.61 0.00 37.77 3.61
4639 6766 1.338136 GGAGGCCAGATTCCGGAAGA 61.338 60.000 23.47 0.00 0.00 2.87
4681 6808 7.849804 TCACTAATTAGAATTCTGCCAAGTC 57.150 36.000 19.38 0.00 0.00 3.01
4685 6812 6.998968 AATTAGAATTCTGCCAAGTCTCTG 57.001 37.500 18.47 0.00 0.00 3.35
4696 6823 3.496507 GCCAAGTCTCTGTTTCTTCTCAC 59.503 47.826 0.00 0.00 0.00 3.51
4697 6824 4.742138 GCCAAGTCTCTGTTTCTTCTCACT 60.742 45.833 0.00 0.00 0.00 3.41
4724 6851 9.607333 TCTCAGGTTGAATTGATAGATATACCT 57.393 33.333 0.00 0.00 33.96 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 92 3.554934 TGGCCAAAGCTAATATGTGGAG 58.445 45.455 0.61 0.00 39.73 3.86
170 174 9.550406 AATAATGAACCTAATGGCATTGATTTG 57.450 29.630 22.57 8.51 36.63 2.32
318 323 8.546083 AATTAGACATGAATGGTACTCTCTCT 57.454 34.615 0.00 0.00 0.00 3.10
504 519 2.728690 TAAGCGCCGTTCTAGTCAAA 57.271 45.000 2.29 0.00 0.00 2.69
505 520 2.728690 TTAAGCGCCGTTCTAGTCAA 57.271 45.000 2.29 0.00 0.00 3.18
587 602 5.825593 TCCTTGTGAAGTTCCTTGATACT 57.174 39.130 0.00 0.00 0.00 2.12
639 655 9.251792 GAAAACACCCGTCTACAATTTATTTTT 57.748 29.630 0.00 0.00 0.00 1.94
640 656 8.635328 AGAAAACACCCGTCTACAATTTATTTT 58.365 29.630 0.00 0.00 0.00 1.82
644 1019 5.049267 GCAGAAAACACCCGTCTACAATTTA 60.049 40.000 0.00 0.00 0.00 1.40
668 1045 6.757237 ACTATCACATTGAAGGCTAGATCAG 58.243 40.000 0.00 0.00 0.00 2.90
732 1139 1.792006 AAATCGTCACCGGACTCAAC 58.208 50.000 9.46 0.00 42.05 3.18
768 1175 4.079253 ACGGCTATGGTCACAGAATTTTT 58.921 39.130 0.00 0.00 0.00 1.94
770 1177 3.350219 ACGGCTATGGTCACAGAATTT 57.650 42.857 0.00 0.00 0.00 1.82
771 1178 4.481368 TTACGGCTATGGTCACAGAATT 57.519 40.909 0.00 0.00 0.00 2.17
772 1179 4.481368 TTTACGGCTATGGTCACAGAAT 57.519 40.909 0.00 0.00 0.00 2.40
802 1209 4.079443 CCCACCCCATCTATCCTTTGTTTA 60.079 45.833 0.00 0.00 0.00 2.01
806 1213 1.852965 ACCCACCCCATCTATCCTTTG 59.147 52.381 0.00 0.00 0.00 2.77
813 1220 0.105862 CGGTCTACCCACCCCATCTA 60.106 60.000 0.00 0.00 31.99 1.98
856 1263 2.954753 GCCACGCTCGACCAAGTTG 61.955 63.158 0.00 0.00 0.00 3.16
857 1264 2.665185 GCCACGCTCGACCAAGTT 60.665 61.111 0.00 0.00 0.00 2.66
858 1265 3.865929 CTGCCACGCTCGACCAAGT 62.866 63.158 0.00 0.00 0.00 3.16
859 1266 3.114616 CTGCCACGCTCGACCAAG 61.115 66.667 0.00 0.00 0.00 3.61
916 1323 1.210967 TCTCTTCTCTCCCGACCTCTC 59.789 57.143 0.00 0.00 0.00 3.20
925 1332 1.850345 TCCTCTCCCTCTCTTCTCTCC 59.150 57.143 0.00 0.00 0.00 3.71
948 1355 4.436998 CGACGGCGGCTTCCTTCT 62.437 66.667 12.58 0.00 0.00 2.85
1123 1548 1.374252 CACTTACGGCGGTCTTGCT 60.374 57.895 13.24 0.00 34.52 3.91
1132 1557 4.692475 ACGGTGGGCACTTACGGC 62.692 66.667 2.91 0.00 0.00 5.68
1134 1559 2.433664 GGACGGTGGGCACTTACG 60.434 66.667 0.00 0.00 0.00 3.18
1209 1634 0.846693 ATATCCAGGACCAAGCACCC 59.153 55.000 0.00 0.00 0.00 4.61
1297 1722 0.329261 CCAAGGATCCCTCAAGCACA 59.671 55.000 8.55 0.00 30.89 4.57
1309 1734 1.228245 ACTGTTGCACGCCAAGGAT 60.228 52.632 0.00 0.00 33.21 3.24
1336 1768 4.789012 TTCATCAATCAGCAGGGAAAAC 57.211 40.909 0.00 0.00 0.00 2.43
1337 1769 7.664552 ATATTTCATCAATCAGCAGGGAAAA 57.335 32.000 0.00 0.00 0.00 2.29
1343 1775 9.031360 CAAGGAAAATATTTCATCAATCAGCAG 57.969 33.333 0.10 0.00 0.00 4.24
1370 1802 2.634453 TGGCAGACAGATTCAGAGTCAA 59.366 45.455 0.00 0.00 34.80 3.18
1456 1892 4.094887 CCATCACCTGAACCGAAAATGTAG 59.905 45.833 0.00 0.00 0.00 2.74
1542 1979 3.547613 GCAAAGCTTCACACAGACAGAAG 60.548 47.826 0.00 0.00 41.20 2.85
1543 1980 2.355756 GCAAAGCTTCACACAGACAGAA 59.644 45.455 0.00 0.00 0.00 3.02
1545 1982 1.945394 AGCAAAGCTTCACACAGACAG 59.055 47.619 0.00 0.00 33.89 3.51
1546 1983 1.942657 GAGCAAAGCTTCACACAGACA 59.057 47.619 0.00 0.00 39.88 3.41
1547 1984 1.942657 TGAGCAAAGCTTCACACAGAC 59.057 47.619 0.00 0.00 39.88 3.51
1553 1990 3.559504 GCTAAGTTGAGCAAAGCTTCAC 58.440 45.455 0.00 0.00 39.88 3.18
1569 2006 2.097142 GCACTGCAAGGAGAATGCTAAG 59.903 50.000 0.00 0.00 44.14 2.18
1586 2023 8.409358 AAGGAAAATTATTCTACTGTTGCACT 57.591 30.769 0.00 0.00 0.00 4.40
1674 2136 1.164411 TTCACATAAGTTGCAGCCCG 58.836 50.000 0.00 0.00 0.00 6.13
1679 2141 5.769662 AGATGGAGTTTTCACATAAGTTGCA 59.230 36.000 0.00 0.00 0.00 4.08
1698 2160 0.622665 AGTTGGGCCTCAGAAGATGG 59.377 55.000 4.53 0.00 0.00 3.51
1831 2869 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
1832 2870 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1833 2871 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1834 2872 2.094390 TGACAAGTAATTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1835 2873 1.894466 TGACAAGTAATTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1836 2874 2.373540 TGACAAGTAATTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1837 2875 3.517602 TGATGACAAGTAATTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1838 2876 5.873179 TTTGATGACAAGTAATTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
1839 2877 7.175816 TCAATTTTGATGACAAGTAATTCCGGA 59.824 33.333 0.00 0.00 37.32 5.14
1840 2878 7.312154 TCAATTTTGATGACAAGTAATTCCGG 58.688 34.615 0.00 0.00 37.32 5.14
1841 2879 8.915871 ATCAATTTTGATGACAAGTAATTCCG 57.084 30.769 5.03 0.00 45.63 4.30
1862 2900 9.685276 AGTTGTAGATACATCCATTTTCATCAA 57.315 29.630 0.00 0.00 35.89 2.57
1904 2942 9.643693 GGAAATACTTGTCATTGAAATGAATGT 57.356 29.630 7.29 8.90 46.13 2.71
1905 2943 8.800972 CGGAAATACTTGTCATTGAAATGAATG 58.199 33.333 7.29 4.11 46.13 2.67
1906 2944 7.975616 CCGGAAATACTTGTCATTGAAATGAAT 59.024 33.333 7.29 0.00 46.13 2.57
1907 2945 7.175816 TCCGGAAATACTTGTCATTGAAATGAA 59.824 33.333 0.00 0.00 46.13 2.57
1908 2946 6.657117 TCCGGAAATACTTGTCATTGAAATGA 59.343 34.615 0.00 1.55 42.78 2.57
1909 2947 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
1910 2948 6.432783 TGTCCGGAAATACTTGTCATTGAAAT 59.567 34.615 5.23 0.00 0.00 2.17
1911 2949 5.765677 TGTCCGGAAATACTTGTCATTGAAA 59.234 36.000 5.23 0.00 0.00 2.69
1912 2950 5.309638 TGTCCGGAAATACTTGTCATTGAA 58.690 37.500 5.23 0.00 0.00 2.69
1913 2951 4.900684 TGTCCGGAAATACTTGTCATTGA 58.099 39.130 5.23 0.00 0.00 2.57
1914 2952 5.391950 CCTTGTCCGGAAATACTTGTCATTG 60.392 44.000 5.23 0.00 0.00 2.82
1915 2953 4.700213 CCTTGTCCGGAAATACTTGTCATT 59.300 41.667 5.23 0.00 0.00 2.57
1916 2954 4.019681 TCCTTGTCCGGAAATACTTGTCAT 60.020 41.667 5.23 0.00 0.00 3.06
1917 2955 3.325425 TCCTTGTCCGGAAATACTTGTCA 59.675 43.478 5.23 0.00 0.00 3.58
1918 2956 3.934068 TCCTTGTCCGGAAATACTTGTC 58.066 45.455 5.23 0.00 0.00 3.18
1919 2957 4.225267 AGATCCTTGTCCGGAAATACTTGT 59.775 41.667 5.23 0.00 36.49 3.16
1920 2958 4.770795 AGATCCTTGTCCGGAAATACTTG 58.229 43.478 5.23 0.00 36.49 3.16
1921 2959 4.141688 GGAGATCCTTGTCCGGAAATACTT 60.142 45.833 5.23 0.00 36.49 2.24
1922 2960 3.388350 GGAGATCCTTGTCCGGAAATACT 59.612 47.826 5.23 0.00 36.49 2.12
1923 2961 3.494573 GGGAGATCCTTGTCCGGAAATAC 60.495 52.174 5.23 0.00 36.13 1.89
1924 2962 2.704065 GGGAGATCCTTGTCCGGAAATA 59.296 50.000 5.23 0.00 36.13 1.40
1925 2963 1.490910 GGGAGATCCTTGTCCGGAAAT 59.509 52.381 5.23 0.00 36.13 2.17
1926 2964 0.909623 GGGAGATCCTTGTCCGGAAA 59.090 55.000 5.23 0.00 36.13 3.13
1927 2965 0.252513 TGGGAGATCCTTGTCCGGAA 60.253 55.000 5.23 0.00 36.13 4.30
1928 2966 0.976073 GTGGGAGATCCTTGTCCGGA 60.976 60.000 0.00 0.00 36.13 5.14
1929 2967 1.264749 TGTGGGAGATCCTTGTCCGG 61.265 60.000 0.00 0.00 36.13 5.14
1930 2968 0.176680 CTGTGGGAGATCCTTGTCCG 59.823 60.000 0.00 0.00 36.13 4.79
1931 2969 0.107459 GCTGTGGGAGATCCTTGTCC 60.107 60.000 0.00 0.00 34.50 4.02
1932 2970 0.908198 AGCTGTGGGAGATCCTTGTC 59.092 55.000 0.00 0.00 36.20 3.18
1933 2971 1.280421 GAAGCTGTGGGAGATCCTTGT 59.720 52.381 0.00 0.00 36.20 3.16
1955 2995 1.405105 TCAACAGCAAAGTTGTCAGGC 59.595 47.619 13.86 0.00 46.78 4.85
1979 3019 4.702131 GGAATCTGCAGATACAACCAAACT 59.298 41.667 28.92 9.73 33.73 2.66
1980 3020 4.458989 TGGAATCTGCAGATACAACCAAAC 59.541 41.667 28.92 11.71 33.73 2.93
1981 3021 4.458989 GTGGAATCTGCAGATACAACCAAA 59.541 41.667 28.92 12.20 33.73 3.28
1982 3022 4.009675 GTGGAATCTGCAGATACAACCAA 58.990 43.478 28.92 15.86 33.73 3.67
2029 3069 2.466846 CAACTGCAAAAGTCAGCCTTG 58.533 47.619 0.00 0.00 38.56 3.61
2034 3074 2.023673 TGACCCAACTGCAAAAGTCAG 58.976 47.619 0.00 0.00 38.56 3.51
2197 3245 2.864114 CCTGCATTCACTCAGGGTG 58.136 57.895 0.00 0.00 44.64 4.61
2202 3250 1.588239 AGATCCCCTGCATTCACTCA 58.412 50.000 0.00 0.00 0.00 3.41
2320 3421 3.509967 CCAACTGGTAAATTTCCTGGGAC 59.490 47.826 0.00 0.00 0.00 4.46
2470 4280 2.799126 TGGTGAACAACTTCCTGTGT 57.201 45.000 0.00 0.00 0.00 3.72
2572 4383 5.825679 ACTGCAACAACACAGAGGTAAATTA 59.174 36.000 0.00 0.00 37.35 1.40
2576 4387 3.202906 GACTGCAACAACACAGAGGTAA 58.797 45.455 0.00 0.00 37.35 2.85
2602 4442 1.002544 GGCACTCCAGCTTGAGTAGTT 59.997 52.381 19.26 0.00 43.63 2.24
2603 4443 0.610687 GGCACTCCAGCTTGAGTAGT 59.389 55.000 19.26 0.00 43.63 2.73
2755 4597 8.989980 AGCTGTTCTTTCACAGTAGTATTTAAC 58.010 33.333 2.95 0.00 45.31 2.01
2791 4634 9.570468 CACAGTAGTATTATACAACTCCTCCTA 57.430 37.037 5.11 0.00 0.00 2.94
2851 4694 5.546621 ACTTCCTGTGCTAAACTGTTAGA 57.453 39.130 0.00 0.00 39.36 2.10
2920 4763 8.872845 GCAAAAACAGCAAGCTATAATGTTATT 58.127 29.630 6.87 3.09 33.17 1.40
2921 4764 8.034215 TGCAAAAACAGCAAGCTATAATGTTAT 58.966 29.630 6.87 0.00 39.39 1.89
2922 4765 7.374272 TGCAAAAACAGCAAGCTATAATGTTA 58.626 30.769 6.87 0.00 39.39 2.41
2923 4766 6.222389 TGCAAAAACAGCAAGCTATAATGTT 58.778 32.000 0.00 0.00 39.39 2.71
2924 4767 5.782047 TGCAAAAACAGCAAGCTATAATGT 58.218 33.333 0.00 0.00 39.39 2.71
2925 4768 6.755141 AGATGCAAAAACAGCAAGCTATAATG 59.245 34.615 0.00 0.00 46.27 1.90
2926 4769 6.870769 AGATGCAAAAACAGCAAGCTATAAT 58.129 32.000 0.00 0.00 46.27 1.28
2927 4770 6.271488 AGATGCAAAAACAGCAAGCTATAA 57.729 33.333 0.00 0.00 46.27 0.98
2933 4776 5.717119 AGGAATAGATGCAAAAACAGCAAG 58.283 37.500 0.00 0.00 46.27 4.01
3039 4882 3.084579 CGCTAACGAGGCTGCTTG 58.915 61.111 0.00 0.00 43.93 4.01
3087 4930 2.005451 GGCTGCTCATGTGAACTACAG 58.995 52.381 0.00 0.00 43.80 2.74
3091 4934 3.641434 AATAGGCTGCTCATGTGAACT 57.359 42.857 0.00 0.00 0.00 3.01
3109 4952 9.383519 CTACTACTTATGTGACACATCCAAAAT 57.616 33.333 24.04 6.56 39.88 1.82
3187 5030 4.808649 GCACCGGCTGAGTAGTAC 57.191 61.111 0.00 0.00 36.96 2.73
3199 5042 2.094659 GTCGATCACCACAGCACCG 61.095 63.158 0.00 0.00 0.00 4.94
3205 5048 0.322187 TCTCCTCGTCGATCACCACA 60.322 55.000 0.00 0.00 0.00 4.17
3206 5049 0.099082 GTCTCCTCGTCGATCACCAC 59.901 60.000 0.00 0.00 0.00 4.16
3232 5075 4.147135 ACCCCGGTGATTAGCACT 57.853 55.556 0.00 0.00 46.86 4.40
3304 5147 2.883386 GAGGGTGATGATTTGCAGATCC 59.117 50.000 14.19 1.13 0.00 3.36
3322 5165 6.764308 ATACCAGACAAAATGACAATGAGG 57.236 37.500 0.00 0.00 0.00 3.86
3325 5168 5.286797 CGCAATACCAGACAAAATGACAATG 59.713 40.000 0.00 0.00 0.00 2.82
3326 5169 5.401550 CGCAATACCAGACAAAATGACAAT 58.598 37.500 0.00 0.00 0.00 2.71
3343 5186 1.772567 ATACCAGGCCCCCGCAATA 60.773 57.895 0.00 0.00 36.38 1.90
3344 5187 3.103213 ATACCAGGCCCCCGCAAT 61.103 61.111 0.00 0.00 36.38 3.56
3348 5191 2.124320 CAACATACCAGGCCCCCG 60.124 66.667 0.00 0.00 0.00 5.73
3364 5207 4.183865 CTCGATCAATTACTTGCTGTCCA 58.816 43.478 0.00 0.00 32.11 4.02
3385 5228 1.383803 GCCCAGGATCTCAGACCCT 60.384 63.158 0.00 0.00 0.00 4.34
3448 5291 0.817654 TCAGCTGGTACACCATCTCG 59.182 55.000 15.13 0.00 46.46 4.04
3475 5318 2.437359 CTCCCGCTGCCAAGGAAG 60.437 66.667 0.00 0.00 0.00 3.46
3490 5333 4.742201 TGCAAGACGAGGCGCCTC 62.742 66.667 40.89 40.89 39.55 4.70
3523 5366 2.282958 AGCGACTTCTCCGGGTCA 60.283 61.111 0.00 0.00 33.19 4.02
3529 5372 1.137825 CCTCGTCAGCGACTTCTCC 59.862 63.158 7.03 0.00 42.81 3.71
3550 5393 1.683707 ACGCCTCATCCTCTGCTCA 60.684 57.895 0.00 0.00 0.00 4.26
3582 5425 0.970937 TCGAAGCCGGTCCATCTCTT 60.971 55.000 1.90 0.00 36.24 2.85
3610 5453 1.524621 CTCCTGGGCGCGATTGAAT 60.525 57.895 12.10 0.00 0.00 2.57
3652 5495 1.676014 GCCAAGGACTGCTCGTACATT 60.676 52.381 0.00 0.00 0.00 2.71
3681 5524 1.005630 AGCAGCTGGTCGTTGACTC 60.006 57.895 13.85 0.00 32.47 3.36
3683 5526 0.880278 TTGAGCAGCTGGTCGTTGAC 60.880 55.000 33.73 15.75 44.88 3.18
3693 5536 0.110104 AAGCTTGTCCTTGAGCAGCT 59.890 50.000 0.00 0.00 41.31 4.24
3728 5571 2.149803 TACTGTCCCGTCAACTGCCG 62.150 60.000 0.00 0.00 0.00 5.69
3729 5572 0.389948 CTACTGTCCCGTCAACTGCC 60.390 60.000 0.00 0.00 0.00 4.85
3756 5599 2.876945 AACCGCTCAGCTGCTGTCT 61.877 57.895 27.24 5.65 32.61 3.41
3776 5619 3.524095 ATGTCAAAACCAGGTCCATCA 57.476 42.857 0.00 0.00 0.00 3.07
3777 5620 6.530019 AAATATGTCAAAACCAGGTCCATC 57.470 37.500 0.00 0.00 0.00 3.51
3778 5621 6.933514 AAAATATGTCAAAACCAGGTCCAT 57.066 33.333 0.00 0.00 0.00 3.41
3779 5622 6.520272 CAAAAATATGTCAAAACCAGGTCCA 58.480 36.000 0.00 0.00 0.00 4.02
3792 5635 6.715347 AATAGTCCAGGGCAAAAATATGTC 57.285 37.500 0.00 0.00 0.00 3.06
3793 5636 8.782137 ATTAATAGTCCAGGGCAAAAATATGT 57.218 30.769 0.00 0.00 0.00 2.29
3800 5657 5.483583 AGCAAAATTAATAGTCCAGGGCAAA 59.516 36.000 0.00 0.00 0.00 3.68
3805 5662 6.212888 AGCAAGCAAAATTAATAGTCCAGG 57.787 37.500 0.00 0.00 0.00 4.45
3827 5685 1.003696 GGAACCAGACAAAGGGAGGAG 59.996 57.143 0.00 0.00 0.00 3.69
3830 5688 2.623416 GTTTGGAACCAGACAAAGGGAG 59.377 50.000 9.20 0.00 37.27 4.30
3847 5705 5.066375 TCAAGTCAATTCCACAGACAGTTTG 59.934 40.000 0.00 0.00 34.80 2.93
3942 5800 6.118170 ACTTGACATTCCATCAGGACATAAG 58.882 40.000 0.00 0.00 45.73 1.73
3943 5801 6.065976 ACTTGACATTCCATCAGGACATAA 57.934 37.500 0.00 0.00 45.73 1.90
3947 5805 3.937706 CAGACTTGACATTCCATCAGGAC 59.062 47.826 0.00 0.00 45.73 3.85
3974 5847 8.497910 ACAGTCCTAGGTTCATATCATACAAT 57.502 34.615 9.08 0.00 0.00 2.71
4012 5885 3.695830 TTTGGCTCCGTGACTCTTAAT 57.304 42.857 0.00 0.00 0.00 1.40
4069 5945 5.179533 CAAAAGGTTCCCGGAAAAGAAAAA 58.820 37.500 0.73 0.00 0.00 1.94
4070 5946 4.223255 ACAAAAGGTTCCCGGAAAAGAAAA 59.777 37.500 0.73 0.00 0.00 2.29
4071 5947 3.770388 ACAAAAGGTTCCCGGAAAAGAAA 59.230 39.130 0.73 0.00 0.00 2.52
4072 5948 3.367321 ACAAAAGGTTCCCGGAAAAGAA 58.633 40.909 0.73 0.00 0.00 2.52
4073 5949 3.021177 ACAAAAGGTTCCCGGAAAAGA 57.979 42.857 0.73 0.00 0.00 2.52
4074 5950 3.812156 AACAAAAGGTTCCCGGAAAAG 57.188 42.857 0.73 0.00 33.35 2.27
4090 5966 3.286353 TGTCTTGCCTTGTGATGAACAA 58.714 40.909 0.00 0.00 46.66 2.83
4091 5967 2.880268 CTGTCTTGCCTTGTGATGAACA 59.120 45.455 0.00 0.00 36.85 3.18
4092 5968 2.880890 ACTGTCTTGCCTTGTGATGAAC 59.119 45.455 0.00 0.00 0.00 3.18
4093 5969 2.880268 CACTGTCTTGCCTTGTGATGAA 59.120 45.455 0.00 0.00 0.00 2.57
4094 5970 2.158769 ACACTGTCTTGCCTTGTGATGA 60.159 45.455 0.00 0.00 33.41 2.92
4095 5971 2.224606 ACACTGTCTTGCCTTGTGATG 58.775 47.619 0.00 0.00 33.41 3.07
4096 5972 2.645838 ACACTGTCTTGCCTTGTGAT 57.354 45.000 0.00 0.00 33.41 3.06
4097 5973 3.769739 ATACACTGTCTTGCCTTGTGA 57.230 42.857 0.00 0.00 33.41 3.58
4142 6018 1.884235 AGAAAGCTTCAACTCACCGG 58.116 50.000 0.00 0.00 0.00 5.28
4143 6019 3.971032 AAAGAAAGCTTCAACTCACCG 57.029 42.857 0.00 0.00 31.82 4.94
4188 6150 2.050077 GTGAAGCTTTGGCCGTGC 60.050 61.111 0.00 1.70 39.73 5.34
4206 6168 4.811557 AGTTGTTGAGAGAACCTTTCTTCG 59.188 41.667 0.00 0.00 40.87 3.79
4225 6187 0.445436 GTGCCGAGCTTCATCAGTTG 59.555 55.000 0.00 0.00 0.00 3.16
4227 6189 1.446792 CGTGCCGAGCTTCATCAGT 60.447 57.895 0.00 0.00 0.00 3.41
4254 6216 5.163195 ACCATCCACTAACTGAACTGAACTT 60.163 40.000 0.00 0.00 0.00 2.66
4262 6224 2.637382 TCTGCACCATCCACTAACTGAA 59.363 45.455 0.00 0.00 0.00 3.02
4263 6225 2.256306 TCTGCACCATCCACTAACTGA 58.744 47.619 0.00 0.00 0.00 3.41
4264 6226 2.768253 TCTGCACCATCCACTAACTG 57.232 50.000 0.00 0.00 0.00 3.16
4265 6227 2.092753 CCATCTGCACCATCCACTAACT 60.093 50.000 0.00 0.00 0.00 2.24
4266 6228 2.292267 CCATCTGCACCATCCACTAAC 58.708 52.381 0.00 0.00 0.00 2.34
4267 6229 1.915489 ACCATCTGCACCATCCACTAA 59.085 47.619 0.00 0.00 0.00 2.24
4268 6230 1.486310 GACCATCTGCACCATCCACTA 59.514 52.381 0.00 0.00 0.00 2.74
4296 6258 2.838202 GTCTTCACCTATCCCCAGTTCA 59.162 50.000 0.00 0.00 0.00 3.18
4309 6271 3.895232 TCTTAGCTGATGGTCTTCACC 57.105 47.619 0.00 0.00 44.10 4.02
4375 6418 2.363038 ACTAAAGTTTTTGCCCCGGTTC 59.637 45.455 0.00 0.00 0.00 3.62
4406 6517 1.449726 GGGGGTGTTTGTCGTTGGTC 61.450 60.000 0.00 0.00 0.00 4.02
4412 6523 0.324943 ATCTCAGGGGGTGTTTGTCG 59.675 55.000 0.00 0.00 0.00 4.35
4416 6527 1.384191 GGCATCTCAGGGGGTGTTT 59.616 57.895 0.00 0.00 0.00 2.83
4417 6528 2.971598 CGGCATCTCAGGGGGTGTT 61.972 63.158 0.00 0.00 0.00 3.32
4418 6529 3.402681 CGGCATCTCAGGGGGTGT 61.403 66.667 0.00 0.00 0.00 4.16
4419 6530 3.083349 TCGGCATCTCAGGGGGTG 61.083 66.667 0.00 0.00 0.00 4.61
4420 6531 3.083997 GTCGGCATCTCAGGGGGT 61.084 66.667 0.00 0.00 0.00 4.95
4421 6532 2.196997 TTTGTCGGCATCTCAGGGGG 62.197 60.000 0.00 0.00 0.00 5.40
4422 6533 1.026718 GTTTGTCGGCATCTCAGGGG 61.027 60.000 0.00 0.00 0.00 4.79
4423 6534 0.036010 AGTTTGTCGGCATCTCAGGG 60.036 55.000 0.00 0.00 0.00 4.45
4424 6535 1.813513 AAGTTTGTCGGCATCTCAGG 58.186 50.000 0.00 0.00 0.00 3.86
4425 6536 3.997021 ACTAAAGTTTGTCGGCATCTCAG 59.003 43.478 0.00 0.00 0.00 3.35
4426 6537 4.002906 ACTAAAGTTTGTCGGCATCTCA 57.997 40.909 0.00 0.00 0.00 3.27
4427 6538 6.663944 ATAACTAAAGTTTGTCGGCATCTC 57.336 37.500 0.00 0.00 39.31 2.75
4428 6539 8.732746 ATTATAACTAAAGTTTGTCGGCATCT 57.267 30.769 0.00 0.00 39.31 2.90
4456 6578 5.563280 CGCATTTTCATTAGCCATCATGCTA 60.563 40.000 0.00 0.00 42.75 3.49
4458 6580 3.427528 CGCATTTTCATTAGCCATCATGC 59.572 43.478 0.00 0.00 0.00 4.06
4459 6581 4.862350 TCGCATTTTCATTAGCCATCATG 58.138 39.130 0.00 0.00 0.00 3.07
4461 6583 4.979943 TTCGCATTTTCATTAGCCATCA 57.020 36.364 0.00 0.00 0.00 3.07
4462 6584 7.928908 TTATTTCGCATTTTCATTAGCCATC 57.071 32.000 0.00 0.00 0.00 3.51
4463 6585 8.196771 TCTTTATTTCGCATTTTCATTAGCCAT 58.803 29.630 0.00 0.00 0.00 4.40
4464 6586 7.542890 TCTTTATTTCGCATTTTCATTAGCCA 58.457 30.769 0.00 0.00 0.00 4.75
4465 6587 7.985634 TCTTTATTTCGCATTTTCATTAGCC 57.014 32.000 0.00 0.00 0.00 3.93
4481 6603 7.759489 TGTGTACTGGCTGAAATCTTTATTT 57.241 32.000 0.00 0.00 38.03 1.40
4482 6604 7.611467 TGATGTGTACTGGCTGAAATCTTTATT 59.389 33.333 0.00 0.00 0.00 1.40
4483 6605 7.112122 TGATGTGTACTGGCTGAAATCTTTAT 58.888 34.615 0.00 0.00 0.00 1.40
4484 6606 6.472016 TGATGTGTACTGGCTGAAATCTTTA 58.528 36.000 0.00 0.00 0.00 1.85
4485 6607 5.316167 TGATGTGTACTGGCTGAAATCTTT 58.684 37.500 0.00 0.00 0.00 2.52
4486 6608 4.910195 TGATGTGTACTGGCTGAAATCTT 58.090 39.130 0.00 0.00 0.00 2.40
4487 6609 4.558226 TGATGTGTACTGGCTGAAATCT 57.442 40.909 0.00 0.00 0.00 2.40
4488 6610 5.449588 CCAATGATGTGTACTGGCTGAAATC 60.450 44.000 0.00 0.00 0.00 2.17
4489 6611 4.400251 CCAATGATGTGTACTGGCTGAAAT 59.600 41.667 0.00 0.00 0.00 2.17
4490 6612 3.758023 CCAATGATGTGTACTGGCTGAAA 59.242 43.478 0.00 0.00 0.00 2.69
4491 6613 3.346315 CCAATGATGTGTACTGGCTGAA 58.654 45.455 0.00 0.00 0.00 3.02
4492 6614 2.989909 CCAATGATGTGTACTGGCTGA 58.010 47.619 0.00 0.00 0.00 4.26
4496 6618 1.402968 GCAGCCAATGATGTGTACTGG 59.597 52.381 0.00 0.00 0.00 4.00
4497 6619 1.402968 GGCAGCCAATGATGTGTACTG 59.597 52.381 6.55 0.00 0.00 2.74
4498 6620 1.004628 TGGCAGCCAATGATGTGTACT 59.995 47.619 13.33 0.00 0.00 2.73
4499 6621 1.133025 GTGGCAGCCAATGATGTGTAC 59.867 52.381 18.28 0.00 34.18 2.90
4500 6622 1.271817 TGTGGCAGCCAATGATGTGTA 60.272 47.619 18.28 0.00 34.18 2.90
4501 6623 0.540133 TGTGGCAGCCAATGATGTGT 60.540 50.000 18.28 0.00 34.18 3.72
4502 6624 0.172578 CTGTGGCAGCCAATGATGTG 59.827 55.000 18.28 0.00 34.18 3.21
4503 6625 0.251474 ACTGTGGCAGCCAATGATGT 60.251 50.000 18.28 7.92 34.18 3.06
4504 6626 0.892755 AACTGTGGCAGCCAATGATG 59.107 50.000 18.28 7.26 34.18 3.07
4505 6627 2.372264 CTAACTGTGGCAGCCAATGAT 58.628 47.619 18.28 9.25 34.18 2.45
4506 6628 1.825090 CTAACTGTGGCAGCCAATGA 58.175 50.000 18.28 1.85 34.18 2.57
4507 6629 0.171903 GCTAACTGTGGCAGCCAATG 59.828 55.000 18.28 14.51 34.18 2.82
4508 6630 0.251297 TGCTAACTGTGGCAGCCAAT 60.251 50.000 18.28 5.58 36.13 3.16
4509 6631 1.150308 TGCTAACTGTGGCAGCCAA 59.850 52.632 18.28 5.90 36.13 4.52
4510 6632 2.835420 TGCTAACTGTGGCAGCCA 59.165 55.556 11.22 11.22 36.13 4.75
4514 6636 1.506309 CGTTGCTGCTAACTGTGGCA 61.506 55.000 0.00 8.11 39.20 4.92
4515 6637 1.207593 CGTTGCTGCTAACTGTGGC 59.792 57.895 0.00 0.04 0.00 5.01
4516 6638 0.602638 TCCGTTGCTGCTAACTGTGG 60.603 55.000 0.00 1.94 0.00 4.17
4517 6639 1.225855 TTCCGTTGCTGCTAACTGTG 58.774 50.000 0.00 0.00 0.00 3.66
4518 6640 2.185004 ATTCCGTTGCTGCTAACTGT 57.815 45.000 0.00 0.00 0.00 3.55
4519 6641 4.332543 TCATTATTCCGTTGCTGCTAACTG 59.667 41.667 0.00 1.12 0.00 3.16
4520 6642 4.332819 GTCATTATTCCGTTGCTGCTAACT 59.667 41.667 0.00 0.00 0.00 2.24
4521 6643 4.495844 GGTCATTATTCCGTTGCTGCTAAC 60.496 45.833 0.00 3.20 0.00 2.34
4522 6644 3.625764 GGTCATTATTCCGTTGCTGCTAA 59.374 43.478 0.00 0.00 0.00 3.09
4523 6645 3.118408 AGGTCATTATTCCGTTGCTGCTA 60.118 43.478 0.00 0.00 0.00 3.49
4524 6646 2.017049 GGTCATTATTCCGTTGCTGCT 58.983 47.619 0.00 0.00 0.00 4.24
4525 6647 2.017049 AGGTCATTATTCCGTTGCTGC 58.983 47.619 0.00 0.00 0.00 5.25
4526 6648 2.614057 GGAGGTCATTATTCCGTTGCTG 59.386 50.000 0.00 0.00 0.00 4.41
4527 6649 2.505819 AGGAGGTCATTATTCCGTTGCT 59.494 45.455 0.00 0.00 36.11 3.91
4528 6650 2.614057 CAGGAGGTCATTATTCCGTTGC 59.386 50.000 0.00 0.00 36.11 4.17
4529 6651 3.871594 GACAGGAGGTCATTATTCCGTTG 59.128 47.826 0.00 0.00 46.19 4.10
4530 6652 4.138487 GACAGGAGGTCATTATTCCGTT 57.862 45.455 0.00 0.00 46.19 4.44
4531 6653 3.821421 GACAGGAGGTCATTATTCCGT 57.179 47.619 0.00 0.00 46.19 4.69
4541 6663 1.305718 AGAGGCAGGACAGGAGGTC 60.306 63.158 0.00 0.00 46.20 3.85
4542 6664 1.305718 GAGAGGCAGGACAGGAGGT 60.306 63.158 0.00 0.00 0.00 3.85
4543 6665 0.906756 TTGAGAGGCAGGACAGGAGG 60.907 60.000 0.00 0.00 0.00 4.30
4544 6666 0.536260 CTTGAGAGGCAGGACAGGAG 59.464 60.000 0.00 0.00 0.00 3.69
4545 6667 0.178921 ACTTGAGAGGCAGGACAGGA 60.179 55.000 0.00 0.00 0.00 3.86
4546 6668 0.036577 CACTTGAGAGGCAGGACAGG 60.037 60.000 0.00 0.00 0.00 4.00
4547 6669 0.036577 CCACTTGAGAGGCAGGACAG 60.037 60.000 0.00 0.00 0.00 3.51
4548 6670 0.471780 TCCACTTGAGAGGCAGGACA 60.472 55.000 0.00 0.00 0.00 4.02
4549 6671 0.687354 TTCCACTTGAGAGGCAGGAC 59.313 55.000 0.00 0.00 0.00 3.85
4550 6672 0.979665 CTTCCACTTGAGAGGCAGGA 59.020 55.000 0.00 0.00 0.00 3.86
4551 6673 0.979665 TCTTCCACTTGAGAGGCAGG 59.020 55.000 0.00 0.00 0.00 4.85
4552 6674 2.235650 TCATCTTCCACTTGAGAGGCAG 59.764 50.000 0.00 0.00 0.00 4.85
4595 6717 8.932791 CCAAGTACAACATACTTTTGGTACTAG 58.067 37.037 0.00 0.00 35.76 2.57
4613 6740 1.559682 GGAATCTGGCCTCCAAGTACA 59.440 52.381 3.32 0.00 30.80 2.90
4614 6741 1.473434 CGGAATCTGGCCTCCAAGTAC 60.473 57.143 3.32 0.00 30.80 2.73
4615 6742 0.830648 CGGAATCTGGCCTCCAAGTA 59.169 55.000 3.32 0.00 30.80 2.24
4616 6743 1.604378 CGGAATCTGGCCTCCAAGT 59.396 57.895 3.32 0.00 30.80 3.16
4618 6745 1.204786 TTCCGGAATCTGGCCTCCAA 61.205 55.000 14.35 0.00 30.80 3.53
4619 6746 1.615124 TTCCGGAATCTGGCCTCCA 60.615 57.895 14.35 0.00 0.00 3.86
4620 6747 1.147153 CTTCCGGAATCTGGCCTCC 59.853 63.158 19.21 0.46 0.00 4.30
4621 6748 0.179070 GTCTTCCGGAATCTGGCCTC 60.179 60.000 19.21 0.00 0.00 4.70
4681 6808 5.221422 ACCTGAGAAGTGAGAAGAAACAGAG 60.221 44.000 0.00 0.00 0.00 3.35
4685 6812 5.360591 TCAACCTGAGAAGTGAGAAGAAAC 58.639 41.667 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.