Multiple sequence alignment - TraesCS4A01G475100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G475100 chr4A 100.000 4646 0 0 1 4646 734054695 734050050 0.000000e+00 8580.0
1 TraesCS4A01G475100 chr7A 94.247 3963 118 46 773 4646 7521742 7525683 0.000000e+00 5954.0
2 TraesCS4A01G475100 chr7A 94.037 436 19 2 953 1382 7510575 7511009 0.000000e+00 654.0
3 TraesCS4A01G475100 chr7A 96.615 325 10 1 3747 4070 7543254 7543578 5.290000e-149 538.0
4 TraesCS4A01G475100 chr7A 89.831 295 24 3 1594 1887 388776334 388776045 1.580000e-99 374.0
5 TraesCS4A01G475100 chr7A 92.488 213 14 2 2165 2376 388772012 388771801 2.100000e-78 303.0
6 TraesCS4A01G475100 chr7A 93.443 183 8 4 4070 4252 7543621 7543799 7.660000e-68 268.0
7 TraesCS4A01G475100 chr7A 93.893 131 7 1 2467 2596 388771527 388771397 3.670000e-46 196.0
8 TraesCS4A01G475100 chr7A 92.188 128 8 1 2824 2949 388770549 388770422 3.690000e-41 180.0
9 TraesCS4A01G475100 chr7A 90.000 120 4 4 2711 2830 388771107 388770996 1.040000e-31 148.0
10 TraesCS4A01G475100 chr7A 92.308 91 7 0 2375 2465 388771714 388771624 3.770000e-26 130.0
11 TraesCS4A01G475100 chr7D 96.897 1708 37 6 1379 3083 6131816 6133510 0.000000e+00 2846.0
12 TraesCS4A01G475100 chr7D 90.561 1409 68 25 1 1382 6130407 6131777 0.000000e+00 1805.0
13 TraesCS4A01G475100 chr7D 95.766 496 21 0 3200 3695 6133611 6134106 0.000000e+00 800.0
14 TraesCS4A01G475100 chr7D 97.546 326 7 1 3747 4071 6134245 6134570 1.460000e-154 556.0
15 TraesCS4A01G475100 chr7D 94.833 329 14 2 1054 1382 559087589 559087264 1.150000e-140 510.0
16 TraesCS4A01G475100 chr7D 91.519 283 18 3 1594 1875 332255936 332256213 7.290000e-103 385.0
17 TraesCS4A01G475100 chr7D 92.019 213 15 2 2165 2376 332260275 332260486 9.770000e-77 298.0
18 TraesCS4A01G475100 chr7D 94.536 183 8 2 1379 1560 118612332 118612513 9.840000e-72 281.0
19 TraesCS4A01G475100 chr7D 94.536 183 8 2 1379 1560 123240259 123240078 9.840000e-72 281.0
20 TraesCS4A01G475100 chr7D 94.536 183 8 2 1379 1560 559087234 559087053 9.840000e-72 281.0
21 TraesCS4A01G475100 chr7D 93.989 183 6 1 4070 4252 6134612 6134789 5.920000e-69 272.0
22 TraesCS4A01G475100 chr7D 94.656 131 6 1 2467 2596 332260758 332260888 7.880000e-48 202.0
23 TraesCS4A01G475100 chr7D 91.406 128 9 1 2824 2949 332261769 332261896 1.720000e-39 174.0
24 TraesCS4A01G475100 chr7D 93.396 106 7 0 2601 2706 332260987 332261092 1.730000e-34 158.0
25 TraesCS4A01G475100 chr7D 90.000 120 4 4 2711 2830 332261178 332261289 1.040000e-31 148.0
26 TraesCS4A01G475100 chrUn 99.916 1194 1 0 3089 4282 341303662 341304855 0.000000e+00 2200.0
27 TraesCS4A01G475100 chrUn 99.885 873 1 0 3089 3961 354467218 354468090 0.000000e+00 1607.0
28 TraesCS4A01G475100 chrUn 95.745 329 12 2 3747 4074 391284062 391283735 3.180000e-146 529.0
29 TraesCS4A01G475100 chrUn 96.012 326 11 2 3747 4071 460727099 460727423 3.180000e-146 529.0
30 TraesCS4A01G475100 chrUn 99.115 113 1 0 4070 4182 391283696 391283584 2.190000e-48 204.0
31 TraesCS4A01G475100 chrUn 99.115 113 1 0 4070 4182 460727465 460727577 2.190000e-48 204.0
32 TraesCS4A01G475100 chrUn 90.141 71 4 2 4182 4252 294479049 294479116 6.400000e-14 89.8
33 TraesCS4A01G475100 chr2A 84.962 532 37 15 4147 4646 503442257 503441737 2.500000e-137 499.0
34 TraesCS4A01G475100 chr2A 94.969 159 5 2 1224 1382 145271337 145271492 3.590000e-61 246.0
35 TraesCS4A01G475100 chr6B 97.321 224 6 0 1455 1678 243493221 243492998 9.430000e-102 381.0
36 TraesCS4A01G475100 chr7B 90.169 295 23 3 1594 1887 300089683 300089394 3.390000e-101 379.0
37 TraesCS4A01G475100 chr7B 92.958 213 13 2 2165 2376 300085633 300085422 4.510000e-80 309.0
38 TraesCS4A01G475100 chr7B 93.893 131 7 1 2467 2596 300085150 300085020 3.670000e-46 196.0
39 TraesCS4A01G475100 chr7B 92.188 128 8 1 2824 2949 300084137 300084010 3.690000e-41 180.0
40 TraesCS4A01G475100 chr7B 94.340 106 6 0 2601 2706 300084920 300084815 3.720000e-36 163.0
41 TraesCS4A01G475100 chr7B 90.000 120 4 4 2711 2830 300084729 300084618 1.040000e-31 148.0
42 TraesCS4A01G475100 chr1B 91.954 261 20 1 3747 4006 252371251 252371511 9.500000e-97 364.0
43 TraesCS4A01G475100 chr1B 84.694 196 28 2 4449 4643 252326551 252326745 1.320000e-45 195.0
44 TraesCS4A01G475100 chr1D 84.900 351 32 15 1224 1559 431532245 431532589 7.450000e-88 335.0
45 TraesCS4A01G475100 chr3A 92.093 215 13 3 3747 3960 715829398 715829609 2.720000e-77 300.0
46 TraesCS4A01G475100 chr3A 86.550 171 12 3 4070 4240 715879488 715879647 1.330000e-40 178.0
47 TraesCS4A01G475100 chr6D 94.536 183 8 2 1379 1560 463099543 463099724 9.840000e-72 281.0
48 TraesCS4A01G475100 chr6D 93.711 159 4 3 1224 1382 463099361 463099513 2.800000e-57 233.0
49 TraesCS4A01G475100 chr4D 94.536 183 8 2 1379 1560 58372397 58372578 9.840000e-72 281.0
50 TraesCS4A01G475100 chr4D 94.536 183 8 2 1379 1560 411902590 411902409 9.840000e-72 281.0
51 TraesCS4A01G475100 chr4D 94.340 159 3 3 1224 1382 407245023 407244871 6.010000e-59 239.0
52 TraesCS4A01G475100 chr2D 94.536 183 8 2 1379 1560 521628098 521628279 9.840000e-72 281.0
53 TraesCS4A01G475100 chr5D 94.771 153 2 3 1230 1382 527632285 527632139 2.800000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G475100 chr4A 734050050 734054695 4645 True 8580.000000 8580 100.0000 1 4646 1 chr4A.!!$R1 4645
1 TraesCS4A01G475100 chr7A 7521742 7525683 3941 False 5954.000000 5954 94.2470 773 4646 1 chr7A.!!$F2 3873
2 TraesCS4A01G475100 chr7A 7543254 7543799 545 False 403.000000 538 95.0290 3747 4252 2 chr7A.!!$F3 505
3 TraesCS4A01G475100 chr7D 6130407 6134789 4382 False 1255.800000 2846 94.9518 1 4252 5 chr7D.!!$F3 4251
4 TraesCS4A01G475100 chr7D 559087053 559087589 536 True 395.500000 510 94.6845 1054 1560 2 chr7D.!!$R2 506
5 TraesCS4A01G475100 chrUn 341303662 341304855 1193 False 2200.000000 2200 99.9160 3089 4282 1 chrUn.!!$F2 1193
6 TraesCS4A01G475100 chrUn 354467218 354468090 872 False 1607.000000 1607 99.8850 3089 3961 1 chrUn.!!$F3 872
7 TraesCS4A01G475100 chr2A 503441737 503442257 520 True 499.000000 499 84.9620 4147 4646 1 chr2A.!!$R1 499
8 TraesCS4A01G475100 chr7B 300084010 300089683 5673 True 229.166667 379 92.2580 1594 2949 6 chr7B.!!$R1 1355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 268 0.606604 GCGTACTTCCAGGAGGTGAA 59.393 55.000 14.59 0.0 35.89 3.18 F
265 269 1.001633 GCGTACTTCCAGGAGGTGAAA 59.998 52.381 14.59 0.0 35.89 2.69 F
271 275 1.064825 TCCAGGAGGTGAAAGGGTTC 58.935 55.000 0.00 0.0 35.89 3.62 F
748 772 1.250840 GCTTGGGGTGGGTTCATGAC 61.251 60.000 0.00 0.0 0.00 3.06 F
1467 1572 1.268133 GCGCGTGTGACCTTTTTGTTA 60.268 47.619 8.43 0.0 0.00 2.41 F
2895 7334 0.107643 TCGGTCATTGGCTTCACACA 59.892 50.000 0.00 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1661 0.803117 CATGAGGCAGCTGACAAGTG 59.197 55.000 24.55 12.94 0.00 3.16 R
2263 5856 1.134128 AGCACATCAGTTGGTGTGACA 60.134 47.619 25.35 0.00 46.58 3.58 R
2484 6261 9.586435 AAAATAACTGGACTTGAGAAAAAGTTG 57.414 29.630 0.00 0.00 40.48 3.16 R
2881 7320 0.040157 CGGTGTGTGTGAAGCCAATG 60.040 55.000 0.00 0.00 0.00 2.82 R
3033 7474 2.606108 GCGGCCCTAACAAAAGAAATG 58.394 47.619 0.00 0.00 0.00 2.32 R
4596 9214 1.266867 TGAGCAGTGAGGCCATAGCA 61.267 55.000 5.01 0.00 42.56 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 9.844257 ATTTCCCAATTTGTAGAATTTGTTCAA 57.156 25.926 6.52 0.00 0.00 2.69
137 138 7.812309 ATTCGCTTTCCTAAATAAAAACAGC 57.188 32.000 0.00 0.00 0.00 4.40
140 141 7.430441 TCGCTTTCCTAAATAAAAACAGCTTT 58.570 30.769 0.00 0.00 0.00 3.51
169 170 8.746052 ATTCCAAATAATGTTTAGATCGGTCA 57.254 30.769 0.00 0.00 0.00 4.02
171 172 6.540914 TCCAAATAATGTTTAGATCGGTCACC 59.459 38.462 0.00 0.00 0.00 4.02
188 189 4.873827 GGTCACCGCTCACAATTCTTATAA 59.126 41.667 0.00 0.00 0.00 0.98
194 195 4.332543 CGCTCACAATTCTTATAAGCCACA 59.667 41.667 7.67 0.00 0.00 4.17
211 212 4.396166 AGCCACACTGCAATTATTAGACAC 59.604 41.667 0.00 0.00 0.00 3.67
215 216 6.317088 CACACTGCAATTATTAGACACCAAG 58.683 40.000 0.00 0.00 0.00 3.61
217 218 6.886459 ACACTGCAATTATTAGACACCAAGAT 59.114 34.615 0.00 0.00 0.00 2.40
220 221 9.632638 ACTGCAATTATTAGACACCAAGATAAT 57.367 29.630 0.00 0.00 0.00 1.28
264 268 0.606604 GCGTACTTCCAGGAGGTGAA 59.393 55.000 14.59 0.00 35.89 3.18
265 269 1.001633 GCGTACTTCCAGGAGGTGAAA 59.998 52.381 14.59 0.00 35.89 2.69
266 270 2.931320 GCGTACTTCCAGGAGGTGAAAG 60.931 54.545 14.59 0.00 35.89 2.62
267 271 2.353803 CGTACTTCCAGGAGGTGAAAGG 60.354 54.545 14.59 0.00 35.89 3.11
271 275 1.064825 TCCAGGAGGTGAAAGGGTTC 58.935 55.000 0.00 0.00 35.89 3.62
393 398 5.649831 GCTTGGTTTAGGAAATGAGAGACAT 59.350 40.000 0.00 0.00 41.45 3.06
415 420 1.959226 TCGCGAGTTTGAACCCAGC 60.959 57.895 3.71 0.00 0.00 4.85
474 479 4.537433 GCTACCTGAGCCGGCCTG 62.537 72.222 26.15 17.84 46.41 4.85
483 488 3.497031 GCCGGCCTGTTAGTTCGC 61.497 66.667 18.11 0.00 0.00 4.70
490 495 1.374252 CTGTTAGTTCGCCGCCTGT 60.374 57.895 0.00 0.00 0.00 4.00
491 496 1.626654 CTGTTAGTTCGCCGCCTGTG 61.627 60.000 0.00 0.00 0.00 3.66
543 548 1.667154 TTCCAGAGAGATCACCGCGG 61.667 60.000 26.86 26.86 0.00 6.46
544 549 2.418910 CCAGAGAGATCACCGCGGT 61.419 63.158 28.70 28.70 0.00 5.68
564 569 5.087397 CGGTCGTTTTTGTGTGTTTTCTTA 58.913 37.500 0.00 0.00 0.00 2.10
569 574 9.455559 GTCGTTTTTGTGTGTTTTCTTATTTTC 57.544 29.630 0.00 0.00 0.00 2.29
748 772 1.250840 GCTTGGGGTGGGTTCATGAC 61.251 60.000 0.00 0.00 0.00 3.06
894 936 3.782443 GGAGTGGGCACGGGGTAG 61.782 72.222 0.00 0.00 36.20 3.18
895 937 3.001406 GAGTGGGCACGGGGTAGT 61.001 66.667 0.00 0.00 36.20 2.73
896 938 3.001406 AGTGGGCACGGGGTAGTC 61.001 66.667 0.00 0.00 36.20 2.59
901 943 2.813908 GCACGGGGTAGTCGCTTG 60.814 66.667 0.00 0.00 0.00 4.01
977 1035 4.712425 GCGACAGCCGTACACCGT 62.712 66.667 0.00 0.00 41.15 4.83
993 1051 3.072468 GTCGTCCACCCCGATCCA 61.072 66.667 0.00 0.00 36.62 3.41
1388 1493 3.220674 TGTGTGTGGGTGATTGATTCA 57.779 42.857 0.00 0.00 0.00 2.57
1389 1494 3.148412 TGTGTGTGGGTGATTGATTCAG 58.852 45.455 0.00 0.00 34.17 3.02
1448 1553 1.376553 GCTGTTCCTCTGAGTGGGC 60.377 63.158 3.66 0.00 0.00 5.36
1467 1572 1.268133 GCGCGTGTGACCTTTTTGTTA 60.268 47.619 8.43 0.00 0.00 2.41
1554 1661 3.748568 CCTTCTTGGCTTGACAGAGTTAC 59.251 47.826 0.00 0.00 0.00 2.50
1566 1673 3.722147 ACAGAGTTACACTTGTCAGCTG 58.278 45.455 7.63 7.63 0.00 4.24
1578 1685 3.632643 TGTCAGCTGCCTCATGAATTA 57.367 42.857 9.47 0.00 0.00 1.40
1704 1813 1.876156 CTCTGCCTCAAGTTTGTCACC 59.124 52.381 0.00 0.00 0.00 4.02
1805 1914 5.163519 CCAGTGTCCATTGGATCATTTAACC 60.164 44.000 9.01 0.00 40.26 2.85
2078 5563 5.105877 CCATGACATTCTCTTTCTTGCATGT 60.106 40.000 0.00 0.00 31.29 3.21
2656 6528 2.627945 CTTCCATTGCACCGCTTAGTA 58.372 47.619 0.00 0.00 0.00 1.82
2726 6679 5.923733 ACAAAATTGTACCTTTCACCACA 57.076 34.783 0.00 0.00 40.16 4.17
2796 6749 3.265737 AGTGTATCCCCAACAGCATACAA 59.734 43.478 0.00 0.00 34.34 2.41
2881 7320 3.364277 GGTATGCAACCTCTCGGTC 57.636 57.895 9.89 0.00 44.73 4.79
2895 7334 0.107643 TCGGTCATTGGCTTCACACA 59.892 50.000 0.00 0.00 0.00 3.72
3029 7470 1.008079 GGCAACAGTGACAGCAAGC 60.008 57.895 0.00 0.00 30.49 4.01
4286 8870 1.248785 CCGGTCGTTCCTCTTCCTCA 61.249 60.000 0.00 0.00 0.00 3.86
4433 9049 2.025155 CCGAGGAGAAAGGAATCGAGA 58.975 52.381 0.00 0.00 35.47 4.04
4504 9122 3.869272 CGCAGCATCCACCTTCGC 61.869 66.667 0.00 0.00 0.00 4.70
4596 9214 4.501285 TCCTCGTCGCCCTCGGAT 62.501 66.667 0.00 0.00 36.13 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 6.569179 AGCTGTTTTTATTTAGGAAAGCGA 57.431 33.333 0.00 0.00 0.00 4.93
146 147 6.540914 GGTGACCGATCTAAACATTATTTGGA 59.459 38.462 0.00 0.00 0.00 3.53
188 189 4.396166 GTGTCTAATAATTGCAGTGTGGCT 59.604 41.667 0.00 0.00 34.04 4.75
194 195 9.632638 ATTATCTTGGTGTCTAATAATTGCAGT 57.367 29.630 0.00 0.00 0.00 4.40
297 301 4.636206 AGTTGGACTCGCATAAAATTCCTC 59.364 41.667 0.00 0.00 0.00 3.71
298 302 4.589908 AGTTGGACTCGCATAAAATTCCT 58.410 39.130 0.00 0.00 0.00 3.36
393 398 1.001068 TGGGTTCAAACTCGCGACATA 59.999 47.619 3.71 0.00 29.87 2.29
474 479 3.023591 GCACAGGCGGCGAACTAAC 62.024 63.158 12.98 0.00 0.00 2.34
512 517 2.359531 CTCTCTGGAACCGACTACATCC 59.640 54.545 0.00 0.00 0.00 3.51
543 548 9.455559 GAAAATAAGAAAACACACAAAAACGAC 57.544 29.630 0.00 0.00 0.00 4.34
544 549 8.648968 GGAAAATAAGAAAACACACAAAAACGA 58.351 29.630 0.00 0.00 0.00 3.85
709 733 7.118971 CCCAAGCGGATTCATGAATTTTAAAAA 59.881 33.333 21.57 0.00 0.00 1.94
714 738 3.118665 CCCCAAGCGGATTCATGAATTTT 60.119 43.478 21.57 11.29 0.00 1.82
809 833 4.441792 GCTGAACCAAACAACCATTTTCT 58.558 39.130 0.00 0.00 0.00 2.52
891 933 2.222596 CGATTTCTGTGCAAGCGACTAC 60.223 50.000 0.00 0.00 35.02 2.73
892 934 1.992667 CGATTTCTGTGCAAGCGACTA 59.007 47.619 0.00 0.00 35.02 2.59
893 935 0.792640 CGATTTCTGTGCAAGCGACT 59.207 50.000 0.00 0.00 35.02 4.18
894 936 0.790866 GCGATTTCTGTGCAAGCGAC 60.791 55.000 0.00 0.00 35.02 5.19
895 937 1.497278 GCGATTTCTGTGCAAGCGA 59.503 52.632 0.00 0.00 35.02 4.93
896 938 1.860423 CGCGATTTCTGTGCAAGCG 60.860 57.895 0.00 0.00 40.14 4.68
927 974 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
977 1035 3.072468 GTGGATCGGGGTGGACGA 61.072 66.667 0.00 0.00 45.19 4.20
1315 1379 2.838202 GTTATCTGGTGGGGAGAAGACA 59.162 50.000 0.00 0.00 0.00 3.41
1367 1432 3.560105 TGAATCAATCACCCACACACAA 58.440 40.909 0.00 0.00 31.50 3.33
1374 1439 5.497464 TTCTACACTGAATCAATCACCCA 57.503 39.130 0.00 0.00 33.47 4.51
1376 1441 6.599244 TCCATTTCTACACTGAATCAATCACC 59.401 38.462 0.00 0.00 33.47 4.02
1388 1493 9.471702 AAAATGAAGATGATCCATTTCTACACT 57.528 29.630 9.17 0.00 38.94 3.55
1389 1494 9.727627 GAAAATGAAGATGATCCATTTCTACAC 57.272 33.333 9.17 0.07 38.94 2.90
1422 1527 4.269603 CACTCAGAGGAACAGCGATATTTG 59.730 45.833 1.53 0.00 0.00 2.32
1428 1533 1.536073 CCCACTCAGAGGAACAGCGA 61.536 60.000 1.53 0.00 0.00 4.93
1448 1553 2.741122 TAACAAAAAGGTCACACGCG 57.259 45.000 3.53 3.53 0.00 6.01
1467 1572 6.127897 GGCATAGACAAAATCTACAAGCAGTT 60.128 38.462 0.00 0.00 42.90 3.16
1501 1606 4.158949 TGTTCATGGAAGCCTTTGATCATG 59.841 41.667 0.00 0.00 34.89 3.07
1554 1661 0.803117 CATGAGGCAGCTGACAAGTG 59.197 55.000 24.55 12.94 0.00 3.16
1566 1673 9.507329 TCTGGTCTAATAATTAATTCATGAGGC 57.493 33.333 3.39 1.88 0.00 4.70
1578 1685 8.814038 AAGCACTTCAATCTGGTCTAATAATT 57.186 30.769 0.00 0.00 0.00 1.40
1704 1813 1.945387 AGTTATGCGGCTGTCTGATG 58.055 50.000 0.00 0.00 0.00 3.07
1799 1908 5.179929 GCAGTTAAAGCTTCCTACGGTTAAA 59.820 40.000 0.00 0.00 0.00 1.52
1805 1914 2.930682 GGAGCAGTTAAAGCTTCCTACG 59.069 50.000 0.00 0.00 43.58 3.51
2021 5505 7.337436 TGATGCTGATGTATTTCAAATCAGACA 59.663 33.333 14.41 11.72 46.74 3.41
2078 5563 4.464069 GCTTAGAGAAGAAGCTGAAGGA 57.536 45.455 0.00 0.00 44.83 3.36
2263 5856 1.134128 AGCACATCAGTTGGTGTGACA 60.134 47.619 25.35 0.00 46.58 3.58
2484 6261 9.586435 AAAATAACTGGACTTGAGAAAAAGTTG 57.414 29.630 0.00 0.00 40.48 3.16
2656 6528 0.473755 TCTGGCACAATGACTGGTGT 59.526 50.000 0.00 0.00 38.70 4.16
2726 6679 8.416329 AGCTAAAACTCAAGTTGAAATGTTGAT 58.584 29.630 7.06 4.24 38.44 2.57
2881 7320 0.040157 CGGTGTGTGTGAAGCCAATG 60.040 55.000 0.00 0.00 0.00 2.82
2895 7334 7.614192 AGACATTTATTCCCTTAAAATCGGTGT 59.386 33.333 0.00 0.00 0.00 4.16
3029 7470 3.996363 GGCCCTAACAAAAGAAATGCAAG 59.004 43.478 0.00 0.00 0.00 4.01
3033 7474 2.606108 GCGGCCCTAACAAAAGAAATG 58.394 47.619 0.00 0.00 0.00 2.32
4286 8870 2.564947 GGATCGATCTGCTAGGGTTCAT 59.435 50.000 23.96 0.00 0.00 2.57
4504 9122 5.163519 GGGACATATGTTTTGATTGAGTGGG 60.164 44.000 10.30 0.00 0.00 4.61
4596 9214 1.266867 TGAGCAGTGAGGCCATAGCA 61.267 55.000 5.01 0.00 42.56 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.