AutoCloner

Multiple sequence alignment - TraesCS4A01G474700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G474700	chr4A	100.000	5295	0	0	1	5295	733929629	733924335	0.000000e+00	9779.0
1	TraesCS4A01G474700	chr4A	94.304	4933	215	20	38	4911	739830820	739835745	0.000000e+00	7492.0
2	TraesCS4A01G474700	chr4A	95.509	4476	157	17	38	4484	740063764	740059304	0.000000e+00	7112.0
3	TraesCS4A01G474700	chr4A	94.755	4366	171	18	38	4349	742272186	742267825	0.000000e+00	6741.0
4	TraesCS4A01G474700	chr4A	94.228	3188	177	6	2113	5295	739808228	739811413	0.000000e+00	4861.0
5	TraesCS4A01G474700	chr4A	93.642	2957	184	3	2113	5067	740868110	740865156	0.000000e+00	4416.0
6	TraesCS4A01G474700	chr4A	88.781	1034	97	5	531	1549	739806203	739807232	0.000000e+00	1249.0
7	TraesCS4A01G474700	chr4A	88.235	1037	103	5	531	1552	740869551	740868519	0.000000e+00	1221.0
8	TraesCS4A01G474700	chr4A	83.168	1307	155	39	300	1554	741888111	741886818	0.000000e+00	1134.0
9	TraesCS4A01G474700	chr4A	91.552	580	40	4	4403	4976	742267814	742267238	0.000000e+00	791.0
10	TraesCS4A01G474700	chr4A	92.197	346	22	3	4955	5295	742078164	742078509	7.970000e-133	484.0
11	TraesCS4A01G474700	chr4A	91.643	347	23	4	4955	5295	739684182	739684528	4.800000e-130	475.0
12	TraesCS4A01G474700	chr4A	81.579	152	18	8	1	148	740870134	740869989	3.350000e-22	117.0
13	TraesCS4A01G474700	chr4A	79.167	168	16	9	38	189	739805654	739805818	1.210000e-16	99.0
14	TraesCS4A01G474700	chr7A	93.423	2737	162	11	2509	5231	2552380	2549648	0.000000e+00	4041.0
15	TraesCS4A01G474700	chr7A	89.294	3157	278	31	2113	5224	3381230	3384371	0.000000e+00	3903.0
16	TraesCS4A01G474700	chr7A	93.429	2572	156	10	2536	5099	3001942	2999376	0.000000e+00	3801.0
17	TraesCS4A01G474700	chr7A	87.854	1202	116	15	501	1681	2554244	2553052	0.000000e+00	1384.0
18	TraesCS4A01G474700	chr7A	89.265	1034	92	7	531	1549	3004360	3003331	0.000000e+00	1277.0
19	TraesCS4A01G474700	chr7A	86.776	1157	118	14	467	1603	3379539	3380680	0.000000e+00	1256.0
20	TraesCS4A01G474700	chr7A	88.594	640	57	5	501	1124	2851310	2850671	0.000000e+00	763.0
21	TraesCS4A01G474700	chr7A	91.435	467	31	7	4742	5200	2848003	2847538	2.690000e-177	632.0
22	TraesCS4A01G474700	chr7A	87.255	102	6	1	5130	5224	2999375	2999274	5.610000e-20	110.0
23	TraesCS4A01G474700	chr7A	79.762	168	16	7	38	189	3004910	3004745	7.250000e-19	106.0
24	TraesCS4A01G474700	chr7A	89.041	73	7	1	1788	1860	3582095	3582166	7.300000e-14	89.8
25	TraesCS4A01G474700	chr7A	90.625	64	6	0	1793	1856	3003193	3003130	9.450000e-13	86.1
26	TraesCS4A01G474700	chr7D	90.912	2674	199	15	2552	5212	2430080	2432722	0.000000e+00	3552.0
27	TraesCS4A01G474700	chr7D	92.133	2428	178	9	2113	4537	3699373	3701790	0.000000e+00	3413.0
28	TraesCS4A01G474700	chr7D	87.957	1204	112	18	501	1681	3731300	3730107	0.000000e+00	1389.0
29	TraesCS4A01G474700	chr7D	91.375	800	49	9	479	1262	3581669	3582464	0.000000e+00	1077.0
30	TraesCS4A01G474700	chr7D	86.161	672	67	11	1299	1961	3582468	3583122	0.000000e+00	702.0
31	TraesCS4A01G474700	chr7D	91.693	313	19	4	4989	5295	3443415	3443726	1.360000e-115	427.0
32	TraesCS4A01G474700	chr7D	92.513	187	12	2	1904	2089	3583121	3583306	3.140000e-67	267.0
33	TraesCS4A01G474700	chr7D	80.460	174	15	9	32	189	3437946	3438116	1.210000e-21	115.0
34	TraesCS4A01G474700	chr7D	90.541	74	7	0	5127	5200	3594520	3594593	1.210000e-16	99.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G474700	chr4A	733924335	733929629	5294	True	9779.000000	9779	100.000000	1	5295	1	chr4A.!!$R1	5294
1	TraesCS4A01G474700	chr4A	739830820	739835745	4925	False	7492.000000	7492	94.304000	38	4911	1	chr4A.!!$F2	4873
2	TraesCS4A01G474700	chr4A	740059304	740063764	4460	True	7112.000000	7112	95.509000	38	4484	1	chr4A.!!$R2	4446
3	TraesCS4A01G474700	chr4A	742267238	742272186	4948	True	3766.000000	6741	93.153500	38	4976	2	chr4A.!!$R5	4938
4	TraesCS4A01G474700	chr4A	739805654	739811413	5759	False	2069.666667	4861	87.392000	38	5295	3	chr4A.!!$F4	5257
5	TraesCS4A01G474700	chr4A	740865156	740870134	4978	True	1918.000000	4416	87.818667	1	5067	3	chr4A.!!$R4	5066
6	TraesCS4A01G474700	chr4A	741886818	741888111	1293	True	1134.000000	1134	83.168000	300	1554	1	chr4A.!!$R3	1254
7	TraesCS4A01G474700	chr7A	2549648	2554244	4596	True	2712.500000	4041	90.638500	501	5231	2	chr7A.!!$R1	4730
8	TraesCS4A01G474700	chr7A	3379539	3384371	4832	False	2579.500000	3903	88.035000	467	5224	2	chr7A.!!$F2	4757
9	TraesCS4A01G474700	chr7A	2999274	3004910	5636	True	1076.020000	3801	88.067200	38	5224	5	chr7A.!!$R3	5186
10	TraesCS4A01G474700	chr7A	2847538	2851310	3772	True	697.500000	763	90.014500	501	5200	2	chr7A.!!$R2	4699
11	TraesCS4A01G474700	chr7D	2430080	2432722	2642	False	3552.000000	3552	90.912000	2552	5212	1	chr7D.!!$F1	2660
12	TraesCS4A01G474700	chr7D	3699373	3701790	2417	False	3413.000000	3413	92.133000	2113	4537	1	chr7D.!!$F5	2424
13	TraesCS4A01G474700	chr7D	3730107	3731300	1193	True	1389.000000	1389	87.957000	501	1681	1	chr7D.!!$R1	1180
14	TraesCS4A01G474700	chr7D	3581669	3583306	1637	False	682.000000	1077	90.016333	479	2089	3	chr7D.!!$F6	1610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
24	26	0.035630	CTCCTCTGCCCCAAACTCAG	60.036	60.000	0.00	0.00	0.00	3.35	F
716	887	1.285950	GGATGATCACGATCGCCGA	59.714	57.895	16.60	12.81	40.63	5.54	F
1159	1424	0.033366	GGTTGGATTTGGTGGTGTGC	59.967	55.000	0.00	0.00	0.00	4.57	F
1781	2307	0.812014	TGCGCAAGGAAGTTTCGTCA	60.812	50.000	8.16	0.00	38.28	4.35	F
2888	4066	0.694771	TGCAGAGGAAGTGGCAGAAT	59.305	50.000	0.00	0.00	0.00	2.40	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1159	1424	2.267188	CATGGCAATGGTGTCTTTCG	57.733	50.000	0.00	0.00	0.00	3.46	R
2348	3513	2.638325	TGGGGATTCAGAAACACCCTA	58.362	47.619	9.17	7.21	40.31	3.53	R
2541	3718	2.744760	TCTCCTCATGGACCTCTTCTG	58.255	52.381	0.00	0.00	37.46	3.02	R
3745	4931	2.050144	AGGCCGATGATGTATCTTGGT	58.950	47.619	0.00	0.00	33.44	3.67	R
4538	5728	1.031235	TACCACAACCGAACACGAGA	58.969	50.000	0.00	0.00	0.00	4.04	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	21	2.858476	TGCCTCCTCTGCCCCAAA	60.858	61.111	0.00	0.00	0.00	3.28
23	25	1.492133	CCTCCTCTGCCCCAAACTCA	61.492	60.000	0.00	0.00	0.00	3.41
24	26	0.035630	CTCCTCTGCCCCAAACTCAG	60.036	60.000	0.00	0.00	0.00	3.35
86	88	3.244875	ACAACCTACCATCATTGTGAGCA	60.245	43.478	0.00	0.00	34.08	4.26
88	90	3.813443	ACCTACCATCATTGTGAGCATC	58.187	45.455	0.00	0.00	0.00	3.91
93	95	6.543465	CCTACCATCATTGTGAGCATCTTTTA	59.457	38.462	0.00	0.00	34.92	1.52
368	465	9.512435	CTAGAATTGTTCCATGATTTGATTGTC	57.488	33.333	0.00	0.00	0.00	3.18
459	563	9.003112	CATTCTTTTAATAGATCAACAACTGCG	57.997	33.333	0.00	0.00	0.00	5.18
678	849	1.466856	CAGCATGCAGGCCTTTCTTA	58.533	50.000	21.42	0.00	0.00	2.10
704	875	3.248764	GGCTCTGCCCTGGATGAT	58.751	61.111	0.00	0.00	44.06	2.45
716	887	1.285950	GGATGATCACGATCGCCGA	59.714	57.895	16.60	12.81	40.63	5.54
729	900	2.383527	CGCCGACTCAAGAACTGGC	61.384	63.158	0.00	0.00	39.10	4.85
757	928	1.526887	GATTCGTGACATGGCATACGG	59.473	52.381	18.17	1.94	37.18	4.02
810	981	3.094386	CTCCCTCAGGACTCTCTCG	57.906	63.158	0.00	0.00	37.19	4.04
1159	1424	0.033366	GGTTGGATTTGGTGGTGTGC	59.967	55.000	0.00	0.00	0.00	4.57
1412	1684	1.287730	GAGTTGTGCCACTGCTCTCG	61.288	60.000	10.48	0.00	38.71	4.04
1628	2056	5.640732	AGTAAAGCTGCGATAAAATTGTGG	58.359	37.500	0.00	0.00	0.00	4.17
1781	2307	0.812014	TGCGCAAGGAAGTTTCGTCA	60.812	50.000	8.16	0.00	38.28	4.35
1810	2336	4.192429	AGGTTGCACAAGGAATAATTGC	57.808	40.909	0.00	0.00	0.00	3.56
1844	2370	5.830000	AACTGAACTTCAACTTGTTACCC	57.170	39.130	0.00	0.00	0.00	3.69
2005	2710	2.418609	GCAATTTGGACATAGGTTGGGC	60.419	50.000	0.00	0.00	0.00	5.36
2015	2720	1.188863	TAGGTTGGGCCGAACTAGTC	58.811	55.000	27.08	12.64	43.70	2.59
2066	2772	1.000955	GCTCTCTTGGACTGTTCGGAA	59.999	52.381	0.00	0.00	0.00	4.30
2070	2779	4.341487	TCTCTTGGACTGTTCGGAAGATA	58.659	43.478	0.00	0.00	41.60	1.98
2376	3541	1.755783	CTGAATCCCCAAGCAGCCC	60.756	63.158	0.00	0.00	0.00	5.19
2397	3562	4.823989	CCCAGAAAGCGAAAGAATGGATAT	59.176	41.667	0.00	0.00	0.00	1.63
2541	3718	3.750652	CAGAGAAGCAAAGAAAGGGAGAC	59.249	47.826	0.00	0.00	0.00	3.36
2607	3784	0.998928	TTGGCCATAGTCACCATGGT	59.001	50.000	13.00	13.00	44.15	3.55
2796	3974	0.936691	AGCATATTCCCCAAGGGCTT	59.063	50.000	0.00	0.00	43.94	4.35
2888	4066	0.694771	TGCAGAGGAAGTGGCAGAAT	59.305	50.000	0.00	0.00	0.00	2.40
2987	4165	7.121759	CCTTTAAAGTTCATGACATGATCCTGT	59.878	37.037	18.62	14.21	39.39	4.00
2997	4183	7.922811	TCATGACATGATCCTGTAATATATCGC	59.077	37.037	14.24	0.00	33.59	4.58
3001	4187	4.905269	TGATCCTGTAATATATCGCGTCG	58.095	43.478	5.77	0.00	0.00	5.12
3482	4668	2.531522	GGCTTTGAAGTTGCCACATT	57.468	45.000	0.00	0.00	45.46	2.71
3507	4693	5.129485	AGAAGAATAAGGAGCCGATGAAAGA	59.871	40.000	0.00	0.00	0.00	2.52
3585	4771	1.908619	TCATCAGCTGACAGGGCTAAA	59.091	47.619	20.97	0.00	38.03	1.85
3745	4931	2.179427	CTAGACACCATGACCACTCCA	58.821	52.381	0.00	0.00	0.00	3.86
4014	5200	1.909302	TCCACCTGGAGGATTCAAGAC	59.091	52.381	8.95	0.00	39.78	3.01
4305	5491	0.811915	ACCGAGTGACGAGATTGGAG	59.188	55.000	0.00	0.00	45.77	3.86
4412	5600	3.391296	TCGCCTTCTTGAGGGCTAAATAT	59.609	43.478	19.12	0.00	46.40	1.28
4420	5608	8.777578	TTCTTGAGGGCTAAATATACAGACTA	57.222	34.615	0.00	0.00	0.00	2.59
4471	5659	3.517500	TGTATGTGGTACTGCTGAATCCA	59.482	43.478	0.00	0.15	34.27	3.41
4594	5784	7.095397	CCACAGTACGTGTTTGATTGAGATTTA	60.095	37.037	13.98	0.00	44.78	1.40
4705	5903	1.798283	TTGCCTTCAAATGCATGCAC	58.202	45.000	25.37	8.21	37.33	4.57
4706	5904	0.680061	TGCCTTCAAATGCATGCACA	59.320	45.000	25.37	11.08	31.31	4.57
4732	5939	7.340999	ACAATGGTAGAGTTTGTGTTAACCTTT	59.659	33.333	2.48	0.00	32.61	3.11
4842	6050	6.640518	AGATTTCTTCTTTGCGACCATACTA	58.359	36.000	0.00	0.00	0.00	1.82
4854	6062	5.301045	TGCGACCATACTATAGCAAACTACT	59.699	40.000	0.00	0.00	0.00	2.57
4894	6102	4.354071	AACAGCCAATTTTTGTGTTTGC	57.646	36.364	0.00	0.00	28.94	3.68
4952	6160	7.116948	AGGAATTCTCGAATGCATATAAGTTCG	59.883	37.037	10.78	10.78	43.34	3.95
5020	6231	4.985538	ATGTAAGGTTACAGAGAGGTCG	57.014	45.455	8.46	0.00	45.80	4.79
5071	6284	7.698506	ATCACATAAATGGATGCTAATCTGG	57.301	36.000	0.00	0.00	32.95	3.86
5072	6285	5.474532	TCACATAAATGGATGCTAATCTGGC	59.525	40.000	0.00	0.00	32.95	4.85
5104	6318	0.252881	AGCAGGGGGAGAGAACATGA	60.253	55.000	0.00	0.00	0.00	3.07
5115	6329	5.279406	GGGAGAGAACATGATACCTCATCTG	60.279	48.000	0.00	0.00	40.20	2.90
5167	6389	1.746470	TCAGAATGATGTGCTGCCAG	58.254	50.000	0.00	0.00	42.56	4.85
5246	6475	4.263018	TGAGACATATACAGCCATGAGC	57.737	45.455	0.00	0.00	44.25	4.26
5267	6496	4.334759	AGCAATCACTTGATCTGCATACAC	59.665	41.667	19.48	0.00	39.13	2.90
5271	6500	7.467675	GCAATCACTTGATCTGCATACACATTA	60.468	37.037	15.54	0.00	37.90	1.90
5277	6506	5.299949	TGATCTGCATACACATTAATCGCT	58.700	37.500	0.00	0.00	0.00	4.93

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
10	11	2.035066	CAGAAAACTGAGTTTGGGGCAG	59.965	50.000	11.83	0.00	35.80	4.85
19	21	4.636206	GTGGAAGACAACAGAAAACTGAGT	59.364	41.667	0.00	0.00	0.00	3.41
23	25	4.142381	GCAAGTGGAAGACAACAGAAAACT	60.142	41.667	0.00	0.00	0.00	2.66
24	26	4.105486	GCAAGTGGAAGACAACAGAAAAC	58.895	43.478	0.00	0.00	0.00	2.43
57	59	6.151648	CACAATGATGGTAGGTTGTCAAGATT	59.848	38.462	0.00	0.00	32.87	2.40
93	95	6.710295	TGTCACAGTGCTAATTAATTGAGTGT	59.290	34.615	11.05	10.17	0.00	3.55
193	250	5.722263	TGATATGAAAACCAACAATGCCTG	58.278	37.500	0.00	0.00	0.00	4.85
319	409	4.743348	GCGAATATCAATTTGCCCCCAATT	60.743	41.667	0.00	0.00	43.93	2.32
442	546	2.939103	GCTCCGCAGTTGTTGATCTATT	59.061	45.455	0.00	0.00	0.00	1.73
459	563	2.669364	CAAGTGCAAAGACAATGCTCC	58.331	47.619	0.00	0.00	44.14	4.70
524	648	7.147549	CCCACTACAAACTCCATCTTCCTTATA	60.148	40.741	0.00	0.00	0.00	0.98
704	875	1.136774	CTTGAGTCGGCGATCGTGA	59.863	57.895	14.79	12.33	40.32	4.35
716	887	1.141657	TGCTTCAGCCAGTTCTTGAGT	59.858	47.619	0.00	0.00	41.18	3.41
729	900	2.350804	CCATGTCACGAATCTGCTTCAG	59.649	50.000	0.00	0.00	33.10	3.02
757	928	1.263484	CATCGATGCAGTCTTCCATGC	59.737	52.381	13.37	0.00	42.86	4.06
850	1021	1.745489	GGCCAGAACGTCCACATCC	60.745	63.158	0.00	0.00	0.00	3.51
1159	1424	2.267188	CATGGCAATGGTGTCTTTCG	57.733	50.000	0.00	0.00	0.00	3.46
1188	1454	7.449395	ACAGTCAAATTCATTCCTGAAATCTCA	59.551	33.333	0.00	0.00	44.29	3.27
1412	1684	3.365265	CTTTGCGGCCTGTGACCC	61.365	66.667	0.00	0.00	0.00	4.46
1628	2056	7.280031	CAGAATGAAATGGCTGTGGTAAACAC	61.280	42.308	0.00	0.00	45.50	3.32
1810	2336	9.893305	AGTTGAAGTTCAGTTATAAAATTTCCG	57.107	29.630	5.56	0.00	0.00	4.30
1884	2533	6.797033	CCTGCTACGTTTTCTACAGAAATTTG	59.203	38.462	5.29	2.11	42.83	2.32
2015	2720	8.900511	ACATATTCAGATTCAACACAAATTCG	57.099	30.769	0.00	0.00	0.00	3.34
2167	3306	3.587061	TGGTCTCCCATGTTTGTACAGAT	59.413	43.478	0.00	0.00	37.77	2.90
2254	3419	4.347453	CAAGCCGCACCAACAGCC	62.347	66.667	0.00	0.00	0.00	4.85
2348	3513	2.638325	TGGGGATTCAGAAACACCCTA	58.362	47.619	9.17	7.21	40.31	3.53
2376	3541	8.370493	TCTTATATCCATTCTTTCGCTTTCTG	57.630	34.615	0.00	0.00	0.00	3.02
2397	3562	4.623932	ACACCAACAGCTTGAGATCTTA	57.376	40.909	0.00	0.00	0.00	2.10
2541	3718	2.744760	TCTCCTCATGGACCTCTTCTG	58.255	52.381	0.00	0.00	37.46	3.02
2796	3974	6.367969	GGTCAGACGCTTCTTACTAATTTTCA	59.632	38.462	4.73	0.00	0.00	2.69
2824	4002	4.991056	ACGAAACATTCTGATATCCATCGG	59.009	41.667	0.00	0.00	38.70	4.18
2987	4165	5.849604	CACTTGACTTCGACGCGATATATTA	59.150	40.000	15.93	0.00	35.23	0.98
2997	4183	3.269486	TCTCTTCACTTGACTTCGACG	57.731	47.619	0.00	0.00	0.00	5.12
3482	4668	6.323996	TCTTTCATCGGCTCCTTATTCTTCTA	59.676	38.462	0.00	0.00	0.00	2.10
3507	4693	2.816411	TCCCTGACAAGATACGGAGTT	58.184	47.619	0.00	0.00	37.78	3.01
3585	4771	5.669477	TGAGCTTGTAAATGGCAAGTTTTT	58.331	33.333	0.00	0.00	43.65	1.94
3686	4872	3.821600	GAGCTCTCATCATTGATTGCCAT	59.178	43.478	6.43	0.00	33.26	4.40
3745	4931	2.050144	AGGCCGATGATGTATCTTGGT	58.950	47.619	0.00	0.00	33.44	3.67
4305	5491	7.399523	GTCAACCGAAAGATAATGTGACATAC	58.600	38.462	0.00	0.00	0.00	2.39
4365	5551	1.539827	GACTTGATGAAACAACCCCCG	59.460	52.381	0.00	0.00	0.00	5.73
4538	5728	1.031235	TACCACAACCGAACACGAGA	58.969	50.000	0.00	0.00	0.00	4.04
4607	5799	6.515512	ACCATGGGACTGCTATTTAGTTAT	57.484	37.500	18.09	0.00	0.00	1.89
4624	5816	2.754552	CCATACACCAACTGAACCATGG	59.245	50.000	11.19	11.19	40.16	3.66
4706	5904	6.362248	AGGTTAACACAAACTCTACCATTGT	58.638	36.000	8.10	0.00	37.76	2.71
4732	5939	7.189079	ACAAAATTGGAGTTCCTGGTAAAAA	57.811	32.000	0.00	0.00	36.82	1.94
4842	6050	5.351465	CACGAAACATGGAGTAGTTTGCTAT	59.649	40.000	0.00	0.00	38.01	2.97
4854	6062	4.035278	GTTTCCAAACACGAAACATGGA	57.965	40.909	8.21	0.00	45.46	3.41
4894	6102	7.424227	AATAAATGACTTTGTTGCCAATGTG	57.576	32.000	0.09	0.00	38.61	3.21
4952	6160	6.704493	TGTCAAAAACTGTCACTGGTAGTATC	59.296	38.462	0.00	0.00	0.00	2.24
5020	6231	4.103469	TGACTCTGTAGGATCTACTCTCCC	59.897	50.000	6.63	0.00	32.89	4.30
5071	6284	1.576421	CTGCTCCTGGTTTGTTCGC	59.424	57.895	0.00	0.00	0.00	4.70
5072	6285	1.237285	CCCTGCTCCTGGTTTGTTCG	61.237	60.000	0.00	0.00	0.00	3.95
5104	6318	0.398522	TGTCGGCCCAGATGAGGTAT	60.399	55.000	0.00	0.00	0.00	2.73
5115	6329	1.081442	CTTTCGCTTTTGTCGGCCC	60.081	57.895	0.00	0.00	0.00	5.80
5167	6389	6.388278	CAGTGGTAGTAACTACTCTGTTTCC	58.612	44.000	9.03	5.93	43.31	3.13
5215	6444	6.471146	GCTGTATATGTCTCAATTCCAGGAT	58.529	40.000	0.00	0.00	0.00	3.24
5246	6475	5.806366	TGTGTATGCAGATCAAGTGATTG	57.194	39.130	0.00	0.00	34.37	2.67
5252	6481	6.073385	AGCGATTAATGTGTATGCAGATCAAG	60.073	38.462	0.00	0.00	0.00	3.02
5267	6496	5.806502	TGCTGAATTTCCAAAGCGATTAATG	59.193	36.000	0.00	0.00	38.53	1.90
5271	6500	3.940209	TGCTGAATTTCCAAAGCGATT	57.060	38.095	0.00	0.00	38.53	3.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.