Multiple sequence alignment - TraesCS4A01G474100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G474100 chr4A 100.000 5771 0 0 1 5771 733701079 733695309 0.000000e+00 10658
1 TraesCS4A01G474100 chr4A 85.934 391 46 4 353 738 604587525 604587911 5.380000e-110 409
2 TraesCS4A01G474100 chr4A 78.689 549 70 30 943 1458 662780841 662781375 7.210000e-84 322
3 TraesCS4A01G474100 chr7A 92.229 2432 148 25 2004 4419 7594493 7596899 0.000000e+00 3406
4 TraesCS4A01G474100 chr7A 84.488 664 51 27 4421 5035 7596984 7597644 4.940000e-170 608
5 TraesCS4A01G474100 chr7A 80.249 643 64 41 1000 1594 7593333 7593960 5.340000e-115 425
6 TraesCS4A01G474100 chr7A 81.071 560 77 13 201 736 728013637 728014191 2.490000e-113 420
7 TraesCS4A01G474100 chr7A 86.134 238 25 6 1783 2013 7594237 7594473 3.450000e-62 250
8 TraesCS4A01G474100 chr7D 89.187 2053 148 39 3043 5040 6480670 6482703 0.000000e+00 2494
9 TraesCS4A01G474100 chr7D 85.275 2309 219 74 804 3016 6478408 6480691 0.000000e+00 2268
10 TraesCS4A01G474100 chr7D 83.024 754 57 32 5046 5771 6482681 6483391 8.220000e-173 617
11 TraesCS4A01G474100 chr7D 79.833 600 50 39 1336 1901 561800905 561800343 7.060000e-99 372
12 TraesCS4A01G474100 chr7D 79.715 562 77 16 205 738 581090817 581091369 7.060000e-99 372
13 TraesCS4A01G474100 chrUn 84.848 495 46 12 266 738 332622116 332622603 6.770000e-129 472
14 TraesCS4A01G474100 chr4B 84.848 495 46 11 266 738 618630248 618630735 6.770000e-129 472
15 TraesCS4A01G474100 chr4B 84.848 495 46 12 266 738 618637021 618637508 6.770000e-129 472
16 TraesCS4A01G474100 chr4B 85.861 389 37 8 355 738 86132787 86132412 1.170000e-106 398
17 TraesCS4A01G474100 chr4B 85.604 389 23 18 1785 2171 439419284 439419641 1.520000e-100 377
18 TraesCS4A01G474100 chr4B 83.590 390 48 13 1594 1979 44859861 44860238 9.200000e-93 351
19 TraesCS4A01G474100 chr4B 78.814 590 58 37 921 1458 44859176 44859750 9.270000e-88 335
20 TraesCS4A01G474100 chr4B 80.365 438 41 28 1057 1458 44630860 44631288 2.030000e-74 291
21 TraesCS4A01G474100 chr4B 84.058 138 18 3 604 738 653444469 653444605 4.690000e-26 130
22 TraesCS4A01G474100 chr5B 84.325 504 48 11 257 738 527288968 527288474 1.130000e-126 464
23 TraesCS4A01G474100 chr5B 77.626 219 29 12 4330 4537 81631371 81631162 1.310000e-21 115
24 TraesCS4A01G474100 chr5B 76.606 218 33 15 4330 4537 651939999 651939790 2.840000e-18 104
25 TraesCS4A01G474100 chr5B 76.147 218 34 15 4330 4537 652145232 652145023 1.320000e-16 99
26 TraesCS4A01G474100 chr1B 82.667 525 59 13 205 706 671544125 671544640 2.470000e-118 436
27 TraesCS4A01G474100 chr1A 80.989 526 68 12 205 707 13969810 13970326 7.010000e-104 388
28 TraesCS4A01G474100 chr2D 81.028 506 65 15 257 738 38059457 38059955 1.960000e-99 374
29 TraesCS4A01G474100 chr2D 83.871 403 37 11 355 738 626641032 626640639 5.500000e-95 359
30 TraesCS4A01G474100 chr2D 87.295 244 28 3 90 332 626641402 626641161 5.700000e-70 276
31 TraesCS4A01G474100 chr4D 86.059 373 20 14 1785 2155 240093327 240093669 7.060000e-99 372
32 TraesCS4A01G474100 chr4D 85.791 373 22 14 1785 2155 160815419 160815076 3.290000e-97 366
33 TraesCS4A01G474100 chr4D 84.755 387 25 15 1785 2167 503886419 503886775 1.980000e-94 357
34 TraesCS4A01G474100 chr4D 84.238 387 27 15 1785 2167 42557789 42557433 4.280000e-91 346
35 TraesCS4A01G474100 chr4D 83.979 387 28 15 1785 2167 203234684 203235040 1.990000e-89 340
36 TraesCS4A01G474100 chr4D 82.653 392 55 9 355 738 344457132 344456746 9.270000e-88 335
37 TraesCS4A01G474100 chr3D 85.602 382 21 15 1785 2162 342373982 342373631 2.540000e-98 370
38 TraesCS4A01G474100 chr3D 85.523 373 22 17 1785 2155 1399943 1400285 1.530000e-95 361
39 TraesCS4A01G474100 chr3D 84.755 387 25 15 1785 2167 491030252 491029896 1.980000e-94 357
40 TraesCS4A01G474100 chr3D 79.328 387 42 18 355 738 74757659 74758010 2.690000e-58 237
41 TraesCS4A01G474100 chr6D 85.791 373 21 15 1785 2155 114562803 114562461 3.290000e-97 366
42 TraesCS4A01G474100 chr6D 90.217 92 9 0 1066 1157 340950092 340950001 2.820000e-23 121
43 TraesCS4A01G474100 chr1D 85.791 373 21 15 1785 2155 264713242 264713584 3.290000e-97 366
44 TraesCS4A01G474100 chr1D 84.755 387 25 15 1785 2167 26717532 26717176 1.980000e-94 357
45 TraesCS4A01G474100 chr1D 85.255 373 23 18 1785 2155 454914074 454914416 7.110000e-94 355
46 TraesCS4A01G474100 chr5D 85.013 387 24 15 1785 2167 177038836 177038480 4.250000e-96 363
47 TraesCS4A01G474100 chr5D 85.013 387 24 15 1785 2167 466927648 466928004 4.250000e-96 363
48 TraesCS4A01G474100 chr5D 85.013 387 24 15 1785 2167 532123099 532122743 4.250000e-96 363
49 TraesCS4A01G474100 chr5D 89.100 211 11 2 1958 2167 433906010 433906209 9.600000e-63 252
50 TraesCS4A01G474100 chr2B 90.278 216 20 1 1785 2000 61124652 61124866 1.220000e-71 281
51 TraesCS4A01G474100 chr6B 89.362 94 10 0 1063 1156 479840683 479840776 1.020000e-22 119
52 TraesCS4A01G474100 chr6A 90.110 91 9 0 1066 1156 480698454 480698364 1.020000e-22 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G474100 chr4A 733695309 733701079 5770 True 10658.00 10658 100.000000 1 5771 1 chr4A.!!$R1 5770
1 TraesCS4A01G474100 chr4A 662780841 662781375 534 False 322.00 322 78.689000 943 1458 1 chr4A.!!$F2 515
2 TraesCS4A01G474100 chr7A 7593333 7597644 4311 False 1172.25 3406 85.775000 1000 5035 4 chr7A.!!$F2 4035
3 TraesCS4A01G474100 chr7A 728013637 728014191 554 False 420.00 420 81.071000 201 736 1 chr7A.!!$F1 535
4 TraesCS4A01G474100 chr7D 6478408 6483391 4983 False 1793.00 2494 85.828667 804 5771 3 chr7D.!!$F2 4967
5 TraesCS4A01G474100 chr7D 561800343 561800905 562 True 372.00 372 79.833000 1336 1901 1 chr7D.!!$R1 565
6 TraesCS4A01G474100 chr7D 581090817 581091369 552 False 372.00 372 79.715000 205 738 1 chr7D.!!$F1 533
7 TraesCS4A01G474100 chr4B 44859176 44860238 1062 False 343.00 351 81.202000 921 1979 2 chr4B.!!$F6 1058
8 TraesCS4A01G474100 chr1B 671544125 671544640 515 False 436.00 436 82.667000 205 706 1 chr1B.!!$F1 501
9 TraesCS4A01G474100 chr1A 13969810 13970326 516 False 388.00 388 80.989000 205 707 1 chr1A.!!$F1 502
10 TraesCS4A01G474100 chr2D 626640639 626641402 763 True 317.50 359 85.583000 90 738 2 chr2D.!!$R1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 1040 0.036875 CGCCTTCCTTCCTTCCTTGT 59.963 55.000 0.00 0.00 0.00 3.16 F
1325 1556 0.038159 GTAGAACGTCTGGCAGCTGT 60.038 55.000 16.64 7.66 0.00 4.40 F
1520 1778 0.107214 GCCGGGGACAGAAATCATCA 60.107 55.000 2.18 0.00 0.00 3.07 F
1741 2123 0.323451 TAGGCCGTCTGCTTCTGAGA 60.323 55.000 0.00 0.00 40.92 3.27 F
1931 2318 0.740164 ATGCTCTGTTCTGCGCTCAG 60.740 55.000 9.73 12.02 41.67 3.35 F
2937 3360 0.396974 ATGGTGGCAACTGTTGTGGT 60.397 50.000 20.57 0.81 37.61 4.16 F
4298 4730 1.001378 GTGAATCTGCCGCAACTTGTT 60.001 47.619 0.00 0.00 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2157 2579 0.176910 TCACCGCACAGTTTGTCAGA 59.823 50.000 0.00 0.00 0.00 3.27 R
2399 2821 0.252479 CTGCAGGAGCTCCAAGATGT 59.748 55.000 33.90 10.03 42.74 3.06 R
2731 3154 0.661552 CCAATCGCATCAGAAGCTGG 59.338 55.000 0.00 0.00 31.51 4.85 R
2734 3157 1.358046 GCCCAATCGCATCAGAAGC 59.642 57.895 0.00 0.00 0.00 3.86 R
3638 4065 1.613437 CAAAACGACCTGGCCTTCATT 59.387 47.619 3.32 0.00 0.00 2.57 R
4372 4805 0.038599 ATGTGCAGCATGGAGTGGAA 59.961 50.000 0.00 0.00 36.81 3.53 R
5420 5996 0.105607 GGAGACTGGGGTAGGTAGGG 60.106 65.000 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.633116 CGGGGGTGGGTCGTTCTT 61.633 66.667 0.00 0.00 0.00 2.52
28 29 2.841317 GGGGGTGGGTCGTTCTTT 59.159 61.111 0.00 0.00 0.00 2.52
29 30 1.602605 GGGGGTGGGTCGTTCTTTG 60.603 63.158 0.00 0.00 0.00 2.77
30 31 1.602605 GGGGTGGGTCGTTCTTTGG 60.603 63.158 0.00 0.00 0.00 3.28
31 32 1.602605 GGGTGGGTCGTTCTTTGGG 60.603 63.158 0.00 0.00 0.00 4.12
32 33 1.602605 GGTGGGTCGTTCTTTGGGG 60.603 63.158 0.00 0.00 0.00 4.96
33 34 1.602605 GTGGGTCGTTCTTTGGGGG 60.603 63.158 0.00 0.00 0.00 5.40
34 35 2.079911 TGGGTCGTTCTTTGGGGGT 61.080 57.895 0.00 0.00 0.00 4.95
35 36 1.152138 GGGTCGTTCTTTGGGGGTT 59.848 57.895 0.00 0.00 0.00 4.11
36 37 0.468585 GGGTCGTTCTTTGGGGGTTT 60.469 55.000 0.00 0.00 0.00 3.27
37 38 0.671796 GGTCGTTCTTTGGGGGTTTG 59.328 55.000 0.00 0.00 0.00 2.93
38 39 1.395635 GTCGTTCTTTGGGGGTTTGT 58.604 50.000 0.00 0.00 0.00 2.83
39 40 1.066454 GTCGTTCTTTGGGGGTTTGTG 59.934 52.381 0.00 0.00 0.00 3.33
40 41 1.064611 TCGTTCTTTGGGGGTTTGTGA 60.065 47.619 0.00 0.00 0.00 3.58
41 42 1.336755 CGTTCTTTGGGGGTTTGTGAG 59.663 52.381 0.00 0.00 0.00 3.51
42 43 2.384828 GTTCTTTGGGGGTTTGTGAGT 58.615 47.619 0.00 0.00 0.00 3.41
43 44 2.764010 GTTCTTTGGGGGTTTGTGAGTT 59.236 45.455 0.00 0.00 0.00 3.01
44 45 2.383855 TCTTTGGGGGTTTGTGAGTTG 58.616 47.619 0.00 0.00 0.00 3.16
45 46 2.107366 CTTTGGGGGTTTGTGAGTTGT 58.893 47.619 0.00 0.00 0.00 3.32
46 47 1.770294 TTGGGGGTTTGTGAGTTGTC 58.230 50.000 0.00 0.00 0.00 3.18
47 48 0.626382 TGGGGGTTTGTGAGTTGTCA 59.374 50.000 0.00 0.00 0.00 3.58
48 49 1.006043 TGGGGGTTTGTGAGTTGTCAA 59.994 47.619 0.00 0.00 33.27 3.18
49 50 2.104170 GGGGGTTTGTGAGTTGTCAAA 58.896 47.619 0.00 0.00 33.27 2.69
50 51 2.498078 GGGGGTTTGTGAGTTGTCAAAA 59.502 45.455 0.00 0.00 35.73 2.44
51 52 3.055747 GGGGGTTTGTGAGTTGTCAAAAA 60.056 43.478 0.00 0.00 37.53 1.94
72 73 7.568199 AAAAAGGAAAGAAAGATGAGAACGA 57.432 32.000 0.00 0.00 0.00 3.85
73 74 6.793492 AAAGGAAAGAAAGATGAGAACGAG 57.207 37.500 0.00 0.00 0.00 4.18
74 75 4.826556 AGGAAAGAAAGATGAGAACGAGG 58.173 43.478 0.00 0.00 0.00 4.63
75 76 4.284746 AGGAAAGAAAGATGAGAACGAGGT 59.715 41.667 0.00 0.00 0.00 3.85
76 77 4.998033 GGAAAGAAAGATGAGAACGAGGTT 59.002 41.667 0.00 0.00 0.00 3.50
77 78 6.014499 AGGAAAGAAAGATGAGAACGAGGTTA 60.014 38.462 0.00 0.00 0.00 2.85
78 79 6.649557 GGAAAGAAAGATGAGAACGAGGTTAA 59.350 38.462 0.00 0.00 0.00 2.01
79 80 7.172703 GGAAAGAAAGATGAGAACGAGGTTAAA 59.827 37.037 0.00 0.00 0.00 1.52
80 81 8.446599 AAAGAAAGATGAGAACGAGGTTAAAA 57.553 30.769 0.00 0.00 0.00 1.52
81 82 8.446599 AAGAAAGATGAGAACGAGGTTAAAAA 57.553 30.769 0.00 0.00 0.00 1.94
110 111 0.976073 AGCTTACCTTCAGCCGGCTA 60.976 55.000 32.30 14.74 38.09 3.93
141 142 2.833533 GCATCCGCCGCTTGCATAA 61.834 57.895 4.86 0.00 41.33 1.90
146 147 2.403586 GCCGCTTGCATAACCGTC 59.596 61.111 0.00 0.00 40.77 4.79
156 157 4.135747 TGCATAACCGTCAGATCAATCA 57.864 40.909 0.00 0.00 0.00 2.57
187 188 4.626081 ACGCTGGCCACAGGTCAC 62.626 66.667 0.00 0.00 45.04 3.67
190 191 2.888447 GCTGGCCACAGGTCACTCT 61.888 63.158 0.00 0.00 45.04 3.24
191 192 1.757306 CTGGCCACAGGTCACTCTT 59.243 57.895 0.00 0.00 41.13 2.85
216 310 3.366374 GCGGCTAGTCTTTTTCTTGCAAT 60.366 43.478 0.00 0.00 35.92 3.56
217 311 4.142687 GCGGCTAGTCTTTTTCTTGCAATA 60.143 41.667 0.00 0.00 35.92 1.90
224 318 5.243954 AGTCTTTTTCTTGCAATAAGGGTCC 59.756 40.000 0.00 0.00 0.00 4.46
225 319 4.217550 TCTTTTTCTTGCAATAAGGGTCCG 59.782 41.667 0.00 0.00 0.00 4.79
232 326 1.471287 GCAATAAGGGTCCGGTTTCAC 59.529 52.381 0.00 0.00 0.00 3.18
233 327 2.878526 GCAATAAGGGTCCGGTTTCACT 60.879 50.000 0.00 0.00 0.00 3.41
242 336 4.161001 GGGTCCGGTTTCACTAGATTTCTA 59.839 45.833 0.00 0.00 0.00 2.10
248 342 6.128634 CCGGTTTCACTAGATTTCTACAACAC 60.129 42.308 0.00 0.00 0.00 3.32
250 344 6.128634 GGTTTCACTAGATTTCTACAACACGG 60.129 42.308 0.00 0.00 0.00 4.94
251 345 5.068234 TCACTAGATTTCTACAACACGGG 57.932 43.478 0.00 0.00 0.00 5.28
252 346 4.768448 TCACTAGATTTCTACAACACGGGA 59.232 41.667 0.00 0.00 0.00 5.14
253 347 4.863131 CACTAGATTTCTACAACACGGGAC 59.137 45.833 0.00 0.00 0.00 4.46
255 349 5.948162 ACTAGATTTCTACAACACGGGACTA 59.052 40.000 0.00 0.00 0.00 2.59
293 387 0.395312 AACGATTCGGTGGTGAAGGT 59.605 50.000 11.29 0.00 0.00 3.50
294 388 1.259609 ACGATTCGGTGGTGAAGGTA 58.740 50.000 11.29 0.00 0.00 3.08
325 419 1.067060 GCAACTGGGGTCTTGTTTCAC 59.933 52.381 0.00 0.00 0.00 3.18
329 423 3.642141 ACTGGGGTCTTGTTTCACAAAT 58.358 40.909 0.00 0.00 37.69 2.32
334 428 6.548321 TGGGGTCTTGTTTCACAAATATAGT 58.452 36.000 0.00 0.00 37.69 2.12
383 494 4.455533 GTGGTTAGACATTGCAACATGAGA 59.544 41.667 0.00 0.00 0.00 3.27
385 496 4.436050 GGTTAGACATTGCAACATGAGACG 60.436 45.833 0.00 0.00 0.00 4.18
450 566 1.425825 CATGAGAGCTCGTCGTCGT 59.574 57.895 8.37 0.00 38.33 4.34
451 567 0.587737 CATGAGAGCTCGTCGTCGTC 60.588 60.000 8.37 0.00 38.33 4.20
452 568 2.020287 GAGAGCTCGTCGTCGTCG 59.980 66.667 8.37 5.50 38.33 5.12
642 763 4.320275 GGGGAATCTGTTTTCGAAACTGAC 60.320 45.833 10.79 7.17 32.32 3.51
667 788 2.504367 TGTTGCAGGAAGTAAGAAGGC 58.496 47.619 0.00 0.00 0.00 4.35
668 789 2.106511 TGTTGCAGGAAGTAAGAAGGCT 59.893 45.455 0.00 0.00 0.00 4.58
707 842 2.028130 AGATCTGACGGCTGTTAGAGG 58.972 52.381 22.88 0.00 43.11 3.69
739 874 2.740055 GCTCCATGCGGCGGATAG 60.740 66.667 15.01 10.31 0.00 2.08
740 875 2.047844 CTCCATGCGGCGGATAGG 60.048 66.667 15.01 17.27 0.00 2.57
741 876 3.596066 CTCCATGCGGCGGATAGGG 62.596 68.421 15.01 12.62 0.00 3.53
742 877 4.704833 CCATGCGGCGGATAGGGG 62.705 72.222 15.01 7.79 0.00 4.79
746 881 4.990553 GCGGCGGATAGGGGCTTC 62.991 72.222 9.78 0.00 0.00 3.86
747 882 4.315941 CGGCGGATAGGGGCTTCC 62.316 72.222 0.00 0.00 0.00 3.46
749 884 2.452937 GGCGGATAGGGGCTTCCTT 61.453 63.158 4.59 0.00 45.47 3.36
750 885 1.125711 GGCGGATAGGGGCTTCCTTA 61.126 60.000 4.59 0.00 45.47 2.69
751 886 0.763035 GCGGATAGGGGCTTCCTTAA 59.237 55.000 4.59 0.00 45.47 1.85
752 887 1.142262 GCGGATAGGGGCTTCCTTAAA 59.858 52.381 4.59 0.00 45.47 1.52
753 888 2.422377 GCGGATAGGGGCTTCCTTAAAA 60.422 50.000 4.59 0.00 45.47 1.52
754 889 3.893521 CGGATAGGGGCTTCCTTAAAAA 58.106 45.455 4.59 0.00 45.47 1.94
773 908 5.573337 AAAAAGATGCAGCCTATCAAGTC 57.427 39.130 0.00 0.00 0.00 3.01
774 909 2.522836 AGATGCAGCCTATCAAGTCG 57.477 50.000 0.00 0.00 0.00 4.18
775 910 1.759445 AGATGCAGCCTATCAAGTCGT 59.241 47.619 0.00 0.00 0.00 4.34
776 911 2.959030 AGATGCAGCCTATCAAGTCGTA 59.041 45.455 0.00 0.00 0.00 3.43
777 912 2.579207 TGCAGCCTATCAAGTCGTAC 57.421 50.000 0.00 0.00 0.00 3.67
778 913 2.100197 TGCAGCCTATCAAGTCGTACT 58.900 47.619 0.00 0.00 0.00 2.73
779 914 2.159240 TGCAGCCTATCAAGTCGTACTG 60.159 50.000 0.00 0.00 0.00 2.74
780 915 2.799917 GCAGCCTATCAAGTCGTACTGG 60.800 54.545 0.00 0.00 0.00 4.00
781 916 2.032620 AGCCTATCAAGTCGTACTGGG 58.967 52.381 0.00 0.00 0.00 4.45
782 917 1.538419 GCCTATCAAGTCGTACTGGGC 60.538 57.143 0.00 0.00 0.00 5.36
783 918 1.068741 CCTATCAAGTCGTACTGGGCC 59.931 57.143 0.00 0.00 0.00 5.80
784 919 1.754803 CTATCAAGTCGTACTGGGCCA 59.245 52.381 5.85 5.85 0.00 5.36
785 920 1.204146 ATCAAGTCGTACTGGGCCAT 58.796 50.000 6.72 0.00 0.00 4.40
786 921 0.249120 TCAAGTCGTACTGGGCCATG 59.751 55.000 6.72 3.79 0.00 3.66
787 922 1.078426 AAGTCGTACTGGGCCATGC 60.078 57.895 6.72 0.00 0.00 4.06
788 923 2.852495 AAGTCGTACTGGGCCATGCG 62.852 60.000 6.72 13.05 0.00 4.73
789 924 3.387091 TCGTACTGGGCCATGCGT 61.387 61.111 6.72 4.03 0.00 5.24
790 925 3.195002 CGTACTGGGCCATGCGTG 61.195 66.667 6.72 0.00 0.00 5.34
885 1020 3.360340 ACGTCACCGTCCTCGTCC 61.360 66.667 0.00 0.00 46.28 4.79
894 1029 4.377760 TCCTCGTCCCGCCTTCCT 62.378 66.667 0.00 0.00 0.00 3.36
895 1030 3.391382 CCTCGTCCCGCCTTCCTT 61.391 66.667 0.00 0.00 0.00 3.36
896 1031 2.184579 CTCGTCCCGCCTTCCTTC 59.815 66.667 0.00 0.00 0.00 3.46
898 1033 3.391382 CGTCCCGCCTTCCTTCCT 61.391 66.667 0.00 0.00 0.00 3.36
899 1034 2.955881 CGTCCCGCCTTCCTTCCTT 61.956 63.158 0.00 0.00 0.00 3.36
900 1035 1.078356 GTCCCGCCTTCCTTCCTTC 60.078 63.158 0.00 0.00 0.00 3.46
902 1037 2.301738 CCCGCCTTCCTTCCTTCCT 61.302 63.158 0.00 0.00 0.00 3.36
903 1038 1.685820 CCGCCTTCCTTCCTTCCTT 59.314 57.895 0.00 0.00 0.00 3.36
905 1040 0.036875 CGCCTTCCTTCCTTCCTTGT 59.963 55.000 0.00 0.00 0.00 3.16
906 1041 1.827681 GCCTTCCTTCCTTCCTTGTC 58.172 55.000 0.00 0.00 0.00 3.18
909 1044 2.553247 CCTTCCTTCCTTCCTTGTCCAC 60.553 54.545 0.00 0.00 0.00 4.02
913 1053 1.774894 TTCCTTCCTTGTCCACGGGG 61.775 60.000 0.00 0.00 0.00 5.73
978 1120 2.125753 CAGCAGACTCCAGCGACC 60.126 66.667 0.00 0.00 35.48 4.79
1021 1190 4.129737 CGGCGGTGATGGAGTCGT 62.130 66.667 0.00 0.00 0.00 4.34
1024 1193 2.875485 CGGTGATGGAGTCGTCGT 59.125 61.111 0.00 0.00 0.00 4.34
1030 1199 3.338126 ATGGAGTCGTCGTCGGTGC 62.338 63.158 1.55 0.00 37.69 5.01
1167 1379 4.354162 TAAGCAACCACCGGCCCC 62.354 66.667 0.00 0.00 0.00 5.80
1209 1429 1.208844 TGGTTGGGGATCGGGCTTAA 61.209 55.000 0.00 0.00 0.00 1.85
1221 1441 0.536687 GGGCTTAATTAGGTCCGGCC 60.537 60.000 2.06 0.59 37.61 6.13
1231 1451 2.413765 GTCCGGCCGATCAGAGTC 59.586 66.667 30.73 2.00 0.00 3.36
1233 1453 3.917760 CCGGCCGATCAGAGTCCC 61.918 72.222 30.73 0.00 0.00 4.46
1236 1460 1.758514 GGCCGATCAGAGTCCCTCA 60.759 63.158 0.00 0.00 32.06 3.86
1265 1489 1.300233 CTGCTAGATCGCCGGGTTC 60.300 63.158 2.18 0.00 0.00 3.62
1278 1502 2.367202 GGGTTCAGCCGAGGATCCA 61.367 63.158 15.82 0.00 38.44 3.41
1313 1544 2.291190 GGCTAGTGGCTAGAGTAGAACG 59.709 54.545 7.30 0.00 41.46 3.95
1325 1556 0.038159 GTAGAACGTCTGGCAGCTGT 60.038 55.000 16.64 7.66 0.00 4.40
1352 1583 5.047377 GCCTAGTTGATTTTGATTTGGACCA 60.047 40.000 0.00 0.00 0.00 4.02
1418 1662 1.303888 CATGGAGCTTGGCAGGTGT 60.304 57.895 0.00 0.00 0.00 4.16
1428 1674 1.748122 GGCAGGTGTGAGCAGGATG 60.748 63.158 0.00 0.00 40.87 3.51
1432 1678 2.103094 GCAGGTGTGAGCAGGATGTATA 59.897 50.000 0.00 0.00 39.31 1.47
1434 1680 4.564041 CAGGTGTGAGCAGGATGTATATC 58.436 47.826 0.00 0.00 39.31 1.63
1435 1681 4.282957 CAGGTGTGAGCAGGATGTATATCT 59.717 45.833 0.00 0.00 39.31 1.98
1436 1682 4.904251 AGGTGTGAGCAGGATGTATATCTT 59.096 41.667 0.00 0.00 39.31 2.40
1444 1690 5.188751 AGCAGGATGTATATCTTCCTTAGGC 59.811 44.000 0.00 7.64 44.90 3.93
1480 1730 2.407090 GTTAACTGCTTAACCCGTCGT 58.593 47.619 0.00 0.00 37.01 4.34
1481 1731 2.352503 TAACTGCTTAACCCGTCGTC 57.647 50.000 0.00 0.00 0.00 4.20
1483 1733 1.210931 CTGCTTAACCCGTCGTCGA 59.789 57.895 2.98 0.00 39.71 4.20
1485 1735 0.179156 TGCTTAACCCGTCGTCGATC 60.179 55.000 2.98 0.00 39.71 3.69
1486 1736 1.198608 GCTTAACCCGTCGTCGATCG 61.199 60.000 9.36 9.36 39.71 3.69
1520 1778 0.107214 GCCGGGGACAGAAATCATCA 60.107 55.000 2.18 0.00 0.00 3.07
1521 1779 1.668419 CCGGGGACAGAAATCATCAC 58.332 55.000 0.00 0.00 0.00 3.06
1532 1790 4.034858 CAGAAATCATCACTCCATCCGTTG 59.965 45.833 0.00 0.00 0.00 4.10
1560 1819 4.486125 AACCATGGGCCATTTTACATTC 57.514 40.909 18.46 0.00 0.00 2.67
1562 1821 2.224018 CCATGGGCCATTTTACATTCGG 60.224 50.000 18.46 7.87 0.00 4.30
1563 1822 2.516227 TGGGCCATTTTACATTCGGA 57.484 45.000 0.00 0.00 0.00 4.55
1569 1828 5.293324 GGGCCATTTTACATTCGGAATTTTC 59.707 40.000 4.39 0.00 0.00 2.29
1589 1849 8.831715 ATTTTCACCATCTTTTCACCAATTAC 57.168 30.769 0.00 0.00 0.00 1.89
1624 1917 2.579787 CGGCCTCGACATCGTCAC 60.580 66.667 0.00 0.00 40.80 3.67
1738 2120 0.460987 CCTTAGGCCGTCTGCTTCTG 60.461 60.000 0.00 0.00 40.92 3.02
1740 2122 0.532573 TTAGGCCGTCTGCTTCTGAG 59.467 55.000 0.00 0.00 40.92 3.35
1741 2123 0.323451 TAGGCCGTCTGCTTCTGAGA 60.323 55.000 0.00 0.00 40.92 3.27
1742 2124 1.153667 GGCCGTCTGCTTCTGAGAG 60.154 63.158 0.00 0.00 40.92 3.20
1743 2125 1.153667 GCCGTCTGCTTCTGAGAGG 60.154 63.158 0.00 0.00 36.87 3.69
1744 2126 1.153667 CCGTCTGCTTCTGAGAGGC 60.154 63.158 9.87 9.87 35.17 4.70
1745 2127 1.603236 CCGTCTGCTTCTGAGAGGCT 61.603 60.000 17.58 0.00 35.64 4.58
1754 2136 4.074526 TGAGAGGCTGGCTCGTGC 62.075 66.667 23.29 17.22 35.15 5.34
1767 2149 1.462541 GCTCGTGCGACAACTGAAATC 60.463 52.381 0.00 0.00 0.00 2.17
1774 2156 1.656095 CGACAACTGAAATCGCTCTCC 59.344 52.381 0.00 0.00 0.00 3.71
1781 2163 4.375272 ACTGAAATCGCTCTCCATGTATG 58.625 43.478 0.00 0.00 0.00 2.39
1795 2177 4.186926 CCATGTATGGTCTTGTCTGTCTG 58.813 47.826 2.66 0.00 43.05 3.51
1829 2211 8.677148 AGTTACATGTATCTCTTTGTTTGTGT 57.323 30.769 6.36 0.00 0.00 3.72
1905 2287 4.678309 GCTCCAAGACAGTGATACAGGTAC 60.678 50.000 0.00 0.00 0.00 3.34
1909 2291 6.839134 TCCAAGACAGTGATACAGGTACATAT 59.161 38.462 0.00 0.00 0.00 1.78
1910 2292 8.002459 TCCAAGACAGTGATACAGGTACATATA 58.998 37.037 0.00 0.00 0.00 0.86
1912 2294 9.067986 CAAGACAGTGATACAGGTACATATAGA 57.932 37.037 0.00 0.00 0.00 1.98
1931 2318 0.740164 ATGCTCTGTTCTGCGCTCAG 60.740 55.000 9.73 12.02 41.67 3.35
1954 2342 3.976793 TCTGCTTCTCTTTGCTGTTTG 57.023 42.857 0.00 0.00 0.00 2.93
1958 2346 3.951037 TGCTTCTCTTTGCTGTTTGGTTA 59.049 39.130 0.00 0.00 0.00 2.85
1959 2347 4.202010 TGCTTCTCTTTGCTGTTTGGTTAC 60.202 41.667 0.00 0.00 0.00 2.50
1975 2363 8.783093 TGTTTGGTTACTTATCATCTGACAAAG 58.217 33.333 0.00 3.69 0.00 2.77
1986 2374 9.890629 TTATCATCTGACAAAGTATGCTTAGTT 57.109 29.630 0.00 0.00 33.95 2.24
1993 2381 6.320164 TGACAAAGTATGCTTAGTTGTTTGGT 59.680 34.615 0.00 1.65 33.95 3.67
2017 2406 8.254508 GGTTTGCAACCCATATTTTATAGTTGA 58.745 33.333 8.36 0.00 46.12 3.18
2038 2457 8.844244 AGTTGATAATACATTTTCCAGATCTGC 58.156 33.333 17.76 0.00 0.00 4.26
2048 2467 1.202915 TCCAGATCTGCTTGGTTGCAA 60.203 47.619 17.76 0.00 42.83 4.08
2075 2494 2.071688 TCTGCTTCTTCTCTGAACGC 57.928 50.000 0.00 0.00 0.00 4.84
2076 2495 1.341209 TCTGCTTCTTCTCTGAACGCA 59.659 47.619 0.00 0.00 33.05 5.24
2138 2560 6.233905 TCCAATAAGTAGATGCACTTGCTA 57.766 37.500 2.33 0.00 39.12 3.49
2155 2577 7.324616 GCACTTGCTACTTGCTTATATATTTGC 59.675 37.037 0.00 0.00 43.37 3.68
2157 2579 7.226720 ACTTGCTACTTGCTTATATATTTGCGT 59.773 33.333 0.00 0.00 43.37 5.24
2267 2689 1.451028 GACAGGTGAGCATCTGCCC 60.451 63.158 10.52 0.00 43.20 5.36
2321 2743 4.443739 CCGTACCCACATAATAAAGCCTCA 60.444 45.833 0.00 0.00 0.00 3.86
2346 2768 5.977489 AAAGGGTAATAAGCACTTTCCAC 57.023 39.130 0.00 0.00 0.00 4.02
2370 2792 5.545723 CCCCTCATCTGACTAACCTGAATAT 59.454 44.000 0.00 0.00 0.00 1.28
2429 2851 2.045536 CCTGCAGCCCCTGAAGTC 60.046 66.667 8.66 0.00 35.44 3.01
2441 2863 1.143305 CTGAAGTCGACTTGCCACAG 58.857 55.000 34.23 27.46 36.11 3.66
2468 2890 0.742281 CTCATGTCGTGGAGCAAGGG 60.742 60.000 0.00 0.00 0.00 3.95
2469 2891 2.045926 ATGTCGTGGAGCAAGGGC 60.046 61.111 0.00 0.00 41.61 5.19
2520 2942 3.035942 GCTACAAACTCAAGTGCAAACG 58.964 45.455 0.00 0.00 0.00 3.60
2521 2943 3.242608 GCTACAAACTCAAGTGCAAACGA 60.243 43.478 0.00 0.00 0.00 3.85
2522 2944 3.405170 ACAAACTCAAGTGCAAACGAG 57.595 42.857 6.09 6.09 0.00 4.18
2558 2980 1.979308 TGGGACGATGTTCTTACCCAA 59.021 47.619 0.00 0.00 43.34 4.12
2588 3010 3.305335 GCCCAAGACATACACAAGGTTTG 60.305 47.826 0.00 0.00 34.95 2.93
2664 3087 7.278203 GGTACCACTAACTTCTTTGCTCTTATC 59.722 40.741 7.15 0.00 0.00 1.75
2676 3099 2.159421 TGCTCTTATCGAACCGACAGAC 60.159 50.000 0.00 0.00 39.18 3.51
2750 3173 0.661552 CCAGCTTCTGATGCGATTGG 59.338 55.000 9.53 8.45 32.44 3.16
2806 3229 3.944015 GCAAGAGATTGTACTTCCAGCAT 59.056 43.478 0.00 0.00 0.00 3.79
2888 3311 7.004555 AGACTGTTGTGGACATCTATACAAA 57.995 36.000 0.00 0.00 37.69 2.83
2937 3360 0.396974 ATGGTGGCAACTGTTGTGGT 60.397 50.000 20.57 0.81 37.61 4.16
2942 3365 3.761752 GGTGGCAACTGTTGTGGTTATAT 59.238 43.478 20.57 0.00 37.61 0.86
3016 3439 6.978080 GCAAATTCTGTTCCACTTGTTAAAGA 59.022 34.615 0.00 0.00 36.84 2.52
3018 3441 7.881775 AATTCTGTTCCACTTGTTAAAGAGT 57.118 32.000 0.00 0.00 36.84 3.24
3096 3519 9.926751 GATATGATATGTGCAAATTCTATTCCG 57.073 33.333 0.00 0.00 0.00 4.30
3137 3560 7.869937 GTGCATGATATGAGAGTACACTAACAT 59.130 37.037 0.00 0.00 0.00 2.71
3174 3599 9.710900 ACTCCATTCATTATTTTTGAACCTTTC 57.289 29.630 0.00 0.00 36.02 2.62
3199 3626 3.876914 TCTGGTGTCAATCAGTGTGTTTC 59.123 43.478 0.00 0.00 33.13 2.78
3329 3756 9.521841 TGATGTACCCTGTTACAATATGAAAAA 57.478 29.630 0.00 0.00 0.00 1.94
3351 3778 8.619146 AAAATGTAATGATGTGCAGTATTTCG 57.381 30.769 0.00 0.00 28.84 3.46
3377 3804 3.569491 ACCCTTTGATGGCCTTGATATG 58.431 45.455 3.32 0.00 0.00 1.78
3380 3807 4.650588 CCCTTTGATGGCCTTGATATGAAA 59.349 41.667 3.32 0.00 0.00 2.69
3390 3817 5.807011 GGCCTTGATATGAAACAATGTGTTC 59.193 40.000 0.00 0.00 40.14 3.18
3392 3819 7.037438 GCCTTGATATGAAACAATGTGTTCAT 58.963 34.615 19.51 19.51 40.14 2.57
3393 3820 7.009815 GCCTTGATATGAAACAATGTGTTCATG 59.990 37.037 22.13 12.38 40.14 3.07
3414 3841 6.553100 TCATGTTTTTGGTTTATCAGTTCCCT 59.447 34.615 0.00 0.00 0.00 4.20
3415 3842 7.726291 TCATGTTTTTGGTTTATCAGTTCCCTA 59.274 33.333 0.00 0.00 0.00 3.53
3445 3872 9.180678 GACATTTGTTTTGTACTTATTCTGGTG 57.819 33.333 0.00 0.00 0.00 4.17
3569 3996 6.665992 TCCTATAGATGCTGAAACGGTATT 57.334 37.500 0.00 0.00 0.00 1.89
3592 4019 3.484407 CCATTTGCTAATCTCCCCTCTG 58.516 50.000 0.00 0.00 0.00 3.35
3638 4065 8.562892 GCTATAAAGCTATTGATTTCTGCAAGA 58.437 33.333 0.00 0.00 45.85 3.02
3653 4080 1.089920 CAAGAATGAAGGCCAGGTCG 58.910 55.000 5.01 0.00 0.00 4.79
3727 4158 3.440872 AGTACCTCGATTCAGTCAGTGTC 59.559 47.826 0.00 0.00 0.00 3.67
3762 4193 2.635915 TGAAACTATTCCGGACAGGTGT 59.364 45.455 1.83 0.00 41.99 4.16
4022 4453 8.533657 TGAAAAATCTATCGGTAAACCTGTCTA 58.466 33.333 0.00 0.00 0.00 2.59
4056 4487 5.284079 TGAGACACACGTAAGGACTTAAAC 58.716 41.667 0.00 0.00 46.39 2.01
4058 4489 5.527033 AGACACACGTAAGGACTTAAACTC 58.473 41.667 0.00 0.00 46.39 3.01
4059 4490 4.293415 ACACACGTAAGGACTTAAACTCG 58.707 43.478 0.00 0.00 46.39 4.18
4068 4499 8.118607 CGTAAGGACTTAAACTCGTTTTTCTTT 58.881 33.333 0.00 2.08 34.23 2.52
4071 4502 8.221965 AGGACTTAAACTCGTTTTTCTTTCAT 57.778 30.769 0.00 0.00 34.23 2.57
4072 4503 8.129211 AGGACTTAAACTCGTTTTTCTTTCATG 58.871 33.333 0.00 0.00 34.23 3.07
4076 4507 3.964909 ACTCGTTTTTCTTTCATGCCAC 58.035 40.909 0.00 0.00 0.00 5.01
4083 4514 1.999648 TCTTTCATGCCACCTGCTTT 58.000 45.000 0.00 0.00 42.00 3.51
4084 4515 2.318908 TCTTTCATGCCACCTGCTTTT 58.681 42.857 0.00 0.00 42.00 2.27
4085 4516 3.495331 TCTTTCATGCCACCTGCTTTTA 58.505 40.909 0.00 0.00 42.00 1.52
4086 4517 3.894427 TCTTTCATGCCACCTGCTTTTAA 59.106 39.130 0.00 0.00 42.00 1.52
4087 4518 4.527816 TCTTTCATGCCACCTGCTTTTAAT 59.472 37.500 0.00 0.00 42.00 1.40
4088 4519 5.714333 TCTTTCATGCCACCTGCTTTTAATA 59.286 36.000 0.00 0.00 42.00 0.98
4089 4520 6.380846 TCTTTCATGCCACCTGCTTTTAATAT 59.619 34.615 0.00 0.00 42.00 1.28
4090 4521 6.543430 TTCATGCCACCTGCTTTTAATATT 57.457 33.333 0.00 0.00 42.00 1.28
4126 4557 8.713971 TGTGATCCACAATATTTGTCTACCTAT 58.286 33.333 0.00 0.00 43.23 2.57
4145 4576 5.701290 ACCTATTGTGAACAAAGTAGCTGAC 59.299 40.000 0.00 0.00 39.55 3.51
4149 4580 3.871006 TGTGAACAAAGTAGCTGACACTG 59.129 43.478 0.00 0.00 0.00 3.66
4192 4623 3.242518 CGCTATTGTCGAACAGTTCTCA 58.757 45.455 11.60 7.66 0.00 3.27
4195 4626 5.374898 GCTATTGTCGAACAGTTCTCAAAC 58.625 41.667 18.19 9.86 35.50 2.93
4213 4644 1.238439 ACTGTTTTCCATGCCGACAG 58.762 50.000 12.34 12.34 42.48 3.51
4298 4730 1.001378 GTGAATCTGCCGCAACTTGTT 60.001 47.619 0.00 0.00 0.00 2.83
4299 4731 1.001487 TGAATCTGCCGCAACTTGTTG 60.001 47.619 8.95 8.95 0.00 3.33
4300 4732 1.001378 GAATCTGCCGCAACTTGTTGT 60.001 47.619 13.97 0.00 0.00 3.32
4311 4743 4.665645 CGCAACTTGTTGTGTACTAATCCG 60.666 45.833 16.20 4.34 0.00 4.18
4318 4750 5.786311 TGTTGTGTACTAATCCGTTAGCTT 58.214 37.500 0.00 0.00 40.82 3.74
4319 4751 6.225318 TGTTGTGTACTAATCCGTTAGCTTT 58.775 36.000 0.00 0.00 40.82 3.51
4360 4793 5.647658 ACTGTTCTGAACTGAATCAACACAA 59.352 36.000 27.24 2.13 34.78 3.33
4370 4803 6.560711 ACTGAATCAACACAAAACCAGTTAC 58.439 36.000 0.00 0.00 30.42 2.50
4372 4805 5.124138 TGAATCAACACAAAACCAGTTACGT 59.876 36.000 0.00 0.00 0.00 3.57
4391 4824 0.038599 TTCCACTCCATGCTGCACAT 59.961 50.000 3.57 0.00 40.66 3.21
4402 4835 4.023450 CCATGCTGCACATTAATCGAATCT 60.023 41.667 3.57 0.00 36.64 2.40
4419 4935 5.466728 TCGAATCTTTGCTATCCTGTTATGC 59.533 40.000 0.00 0.00 0.00 3.14
4458 4974 1.342174 AGGATGGTGTTTTGCTTGCTG 59.658 47.619 0.00 0.00 0.00 4.41
4472 4988 0.395586 TTGCTGGGTGCTTTGTCAGT 60.396 50.000 0.00 0.00 43.37 3.41
4485 5001 7.395190 TGCTTTGTCAGTAATGAAGCATATT 57.605 32.000 12.64 0.00 45.33 1.28
4537 5055 2.715046 TGCTCCCTAATCTGTTGCAAG 58.285 47.619 0.00 0.00 0.00 4.01
4661 5179 0.890090 CGTAGGAGATCCGGGGTCTC 60.890 65.000 26.12 26.12 42.08 3.36
4662 5180 0.479378 GTAGGAGATCCGGGGTCTCT 59.521 60.000 30.89 20.84 41.42 3.10
4719 5244 0.895530 TCACCCTCTTCGTGATCCAC 59.104 55.000 0.00 0.00 35.35 4.02
4741 5266 2.603110 GCTCACGACATCGCTAATTTCA 59.397 45.455 0.14 0.00 44.43 2.69
4777 5303 4.950479 CTGCAGGGTAAGGAGCAG 57.050 61.111 5.57 0.00 46.98 4.24
4784 5310 1.292242 AGGGTAAGGAGCAGATGAGGA 59.708 52.381 0.00 0.00 0.00 3.71
4785 5311 2.119495 GGGTAAGGAGCAGATGAGGAA 58.881 52.381 0.00 0.00 0.00 3.36
4788 5314 2.416680 AAGGAGCAGATGAGGAAAGC 57.583 50.000 0.00 0.00 0.00 3.51
4790 5316 0.107945 GGAGCAGATGAGGAAAGCGT 60.108 55.000 0.00 0.00 0.00 5.07
4793 5319 0.924090 GCAGATGAGGAAAGCGTACG 59.076 55.000 11.84 11.84 0.00 3.67
4795 5321 1.135083 CAGATGAGGAAAGCGTACGGT 60.135 52.381 15.34 15.34 0.00 4.83
4796 5322 2.098607 CAGATGAGGAAAGCGTACGGTA 59.901 50.000 21.64 3.87 0.00 4.02
4797 5323 2.098770 AGATGAGGAAAGCGTACGGTAC 59.901 50.000 21.64 16.80 0.00 3.34
4798 5324 1.246649 TGAGGAAAGCGTACGGTACA 58.753 50.000 21.64 12.61 0.00 2.90
4799 5325 1.820519 TGAGGAAAGCGTACGGTACAT 59.179 47.619 21.64 15.14 0.00 2.29
4800 5326 2.159338 TGAGGAAAGCGTACGGTACATC 60.159 50.000 21.64 22.15 0.00 3.06
4801 5327 1.194495 GGAAAGCGTACGGTACATCG 58.806 55.000 21.64 5.78 0.00 3.84
4802 5328 1.468054 GGAAAGCGTACGGTACATCGT 60.468 52.381 21.64 0.06 45.88 3.73
4816 5342 5.107414 CGGTACATCGTTACATTGTTGTCAA 60.107 40.000 0.00 0.00 37.28 3.18
4819 5345 6.371809 ACATCGTTACATTGTTGTCAAAGT 57.628 33.333 0.00 0.00 38.67 2.66
4831 5357 4.095036 TGTTGTCAAAGTTGCGACATGTTA 59.905 37.500 6.90 0.00 41.55 2.41
4832 5358 4.884458 TGTCAAAGTTGCGACATGTTAA 57.116 36.364 6.90 0.00 37.23 2.01
4833 5359 5.431420 TGTCAAAGTTGCGACATGTTAAT 57.569 34.783 6.90 0.00 37.23 1.40
4841 5367 1.921573 GCGACATGTTAATGCATCGCC 60.922 52.381 14.38 0.00 45.47 5.54
4848 5412 1.535462 GTTAATGCATCGCCGCCTATT 59.465 47.619 0.00 0.00 0.00 1.73
4859 5423 4.382291 TCGCCGCCTATTTTTGTACATAT 58.618 39.130 0.00 0.00 0.00 1.78
4887 5451 2.035321 GAGATGTTCTCGGGCTCTTAGG 59.965 54.545 0.00 0.00 33.35 2.69
4888 5452 0.466124 ATGTTCTCGGGCTCTTAGGC 59.534 55.000 0.00 0.00 40.51 3.93
4902 5466 4.262617 CTCTTAGGCCTGGGAACTTTTAC 58.737 47.826 17.99 0.00 0.00 2.01
4908 5472 3.552875 GCCTGGGAACTTTTACCTATCC 58.447 50.000 0.00 0.00 0.00 2.59
4910 5474 3.433173 CCTGGGAACTTTTACCTATCCGG 60.433 52.174 0.00 0.00 39.35 5.14
4932 5505 3.432186 GCTTGTGGCATGTATAGTCAGGA 60.432 47.826 0.00 0.00 41.35 3.86
4987 5560 5.255443 AGAGGGGAAAGTGTTTATTACCCAT 59.745 40.000 8.46 0.00 39.38 4.00
5023 5596 7.911205 CCGTTCTTGTGTGTAATTCTTTGTTTA 59.089 33.333 0.00 0.00 0.00 2.01
5057 5630 5.627499 TTTTGAGGGATTGTTTCGAGATG 57.373 39.130 0.00 0.00 0.00 2.90
5058 5631 4.551702 TTGAGGGATTGTTTCGAGATGA 57.448 40.909 0.00 0.00 0.00 2.92
5059 5632 4.760530 TGAGGGATTGTTTCGAGATGAT 57.239 40.909 0.00 0.00 0.00 2.45
5060 5633 5.102953 TGAGGGATTGTTTCGAGATGATT 57.897 39.130 0.00 0.00 0.00 2.57
5061 5634 5.500234 TGAGGGATTGTTTCGAGATGATTT 58.500 37.500 0.00 0.00 0.00 2.17
5062 5635 5.945784 TGAGGGATTGTTTCGAGATGATTTT 59.054 36.000 0.00 0.00 0.00 1.82
5074 5647 7.962964 TCGAGATGATTTTGTTTGTAAGTCT 57.037 32.000 0.00 0.00 0.00 3.24
5111 5686 5.010719 GTCATGAGGACGGATTTGGACTATA 59.989 44.000 0.00 0.00 36.65 1.31
5115 5690 7.792364 TGAGGACGGATTTGGACTATATATT 57.208 36.000 0.00 0.00 0.00 1.28
5116 5691 8.202461 TGAGGACGGATTTGGACTATATATTT 57.798 34.615 0.00 0.00 0.00 1.40
5117 5692 8.094548 TGAGGACGGATTTGGACTATATATTTG 58.905 37.037 0.00 0.00 0.00 2.32
5118 5693 7.974504 AGGACGGATTTGGACTATATATTTGT 58.025 34.615 0.00 0.00 0.00 2.83
5146 5721 2.088664 CGCTTTTCGTCTCGTTGTCTAC 59.911 50.000 0.00 0.00 0.00 2.59
5147 5722 3.306818 GCTTTTCGTCTCGTTGTCTACT 58.693 45.455 0.00 0.00 0.00 2.57
5148 5723 3.734735 GCTTTTCGTCTCGTTGTCTACTT 59.265 43.478 0.00 0.00 0.00 2.24
5150 5725 5.630896 TTTTCGTCTCGTTGTCTACTTTG 57.369 39.130 0.00 0.00 0.00 2.77
5151 5726 3.976793 TCGTCTCGTTGTCTACTTTGT 57.023 42.857 0.00 0.00 0.00 2.83
5153 5728 5.027206 TCGTCTCGTTGTCTACTTTGTAG 57.973 43.478 0.00 0.00 0.00 2.74
5154 5729 4.512944 TCGTCTCGTTGTCTACTTTGTAGT 59.487 41.667 4.89 0.00 38.44 2.73
5155 5730 5.008019 TCGTCTCGTTGTCTACTTTGTAGTT 59.992 40.000 4.89 0.00 35.78 2.24
5156 5731 5.339085 CGTCTCGTTGTCTACTTTGTAGTTC 59.661 44.000 4.89 1.81 35.78 3.01
5159 5734 4.971830 TCGTTGTCTACTTTGTAGTTCGTG 59.028 41.667 4.89 0.00 35.78 4.35
5162 5737 6.559158 CGTTGTCTACTTTGTAGTTCGTGTTC 60.559 42.308 4.89 0.00 35.78 3.18
5163 5738 5.893687 TGTCTACTTTGTAGTTCGTGTTCA 58.106 37.500 4.89 0.00 35.78 3.18
5164 5739 6.509656 TGTCTACTTTGTAGTTCGTGTTCAT 58.490 36.000 4.89 0.00 35.78 2.57
5166 5741 6.639686 GTCTACTTTGTAGTTCGTGTTCATCA 59.360 38.462 4.89 0.00 35.78 3.07
5168 5743 6.861065 ACTTTGTAGTTCGTGTTCATCAAT 57.139 33.333 0.00 0.00 0.00 2.57
5169 5744 7.956420 ACTTTGTAGTTCGTGTTCATCAATA 57.044 32.000 0.00 0.00 0.00 1.90
5170 5745 8.373048 ACTTTGTAGTTCGTGTTCATCAATAA 57.627 30.769 0.00 0.00 0.00 1.40
5171 5746 8.999431 ACTTTGTAGTTCGTGTTCATCAATAAT 58.001 29.630 0.00 0.00 0.00 1.28
5172 5747 9.265938 CTTTGTAGTTCGTGTTCATCAATAATG 57.734 33.333 0.00 0.00 36.65 1.90
5173 5748 7.899178 TGTAGTTCGTGTTCATCAATAATGT 57.101 32.000 0.00 0.00 36.68 2.71
5174 5749 8.317891 TGTAGTTCGTGTTCATCAATAATGTT 57.682 30.769 0.00 0.00 36.68 2.71
5175 5750 8.779303 TGTAGTTCGTGTTCATCAATAATGTTT 58.221 29.630 0.00 0.00 36.68 2.83
5176 5751 9.607285 GTAGTTCGTGTTCATCAATAATGTTTT 57.393 29.630 0.00 0.00 36.68 2.43
5177 5752 8.728088 AGTTCGTGTTCATCAATAATGTTTTC 57.272 30.769 0.00 0.00 36.68 2.29
5178 5753 8.567948 AGTTCGTGTTCATCAATAATGTTTTCT 58.432 29.630 0.00 0.00 36.68 2.52
5179 5754 8.840867 GTTCGTGTTCATCAATAATGTTTTCTC 58.159 33.333 0.00 0.00 36.68 2.87
5180 5755 8.093659 TCGTGTTCATCAATAATGTTTTCTCA 57.906 30.769 0.00 0.00 36.68 3.27
5181 5756 8.563732 TCGTGTTCATCAATAATGTTTTCTCAA 58.436 29.630 0.00 0.00 36.68 3.02
5182 5757 9.345517 CGTGTTCATCAATAATGTTTTCTCAAT 57.654 29.630 0.00 0.00 36.68 2.57
5203 5778 9.992910 CTCAATCGAAAAATGATAATCAAGTCA 57.007 29.630 0.00 0.00 0.00 3.41
5215 5790 8.828688 TGATAATCAAGTCATCAATCAGCTAG 57.171 34.615 0.00 0.00 0.00 3.42
5223 5798 8.671921 CAAGTCATCAATCAGCTAGTAACATTT 58.328 33.333 0.00 0.00 0.00 2.32
5227 5802 5.868257 TCAATCAGCTAGTAACATTTTGCG 58.132 37.500 0.00 0.00 0.00 4.85
5231 5806 6.307031 TCAGCTAGTAACATTTTGCGAAAA 57.693 33.333 2.54 0.00 34.41 2.29
5283 5858 4.187694 GGACTTGATTGGCTACTTCAGAG 58.812 47.826 0.00 0.00 0.00 3.35
5287 5862 4.478206 TGATTGGCTACTTCAGAGAAGG 57.522 45.455 11.08 0.00 0.00 3.46
5289 5864 4.532126 TGATTGGCTACTTCAGAGAAGGAA 59.468 41.667 11.08 0.00 0.00 3.36
5414 5990 0.252558 CTACCCACTACCCACCACCT 60.253 60.000 0.00 0.00 0.00 4.00
5415 5991 1.007479 CTACCCACTACCCACCACCTA 59.993 57.143 0.00 0.00 0.00 3.08
5416 5992 0.546027 ACCCACTACCCACCACCTAC 60.546 60.000 0.00 0.00 0.00 3.18
5417 5993 1.269703 CCCACTACCCACCACCTACC 61.270 65.000 0.00 0.00 0.00 3.18
5418 5994 0.252558 CCACTACCCACCACCTACCT 60.253 60.000 0.00 0.00 0.00 3.08
5419 5995 1.007479 CCACTACCCACCACCTACCTA 59.993 57.143 0.00 0.00 0.00 3.08
5420 5996 2.105766 CACTACCCACCACCTACCTAC 58.894 57.143 0.00 0.00 0.00 3.18
5436 6012 1.133231 CCTACCCTACCTACCCCAGTC 60.133 61.905 0.00 0.00 0.00 3.51
5437 6013 1.858246 CTACCCTACCTACCCCAGTCT 59.142 57.143 0.00 0.00 0.00 3.24
5447 6023 2.066999 CCCCAGTCTCCAGCCCTAC 61.067 68.421 0.00 0.00 0.00 3.18
5449 6025 1.333636 CCCAGTCTCCAGCCCTACAG 61.334 65.000 0.00 0.00 0.00 2.74
5450 6026 0.324738 CCAGTCTCCAGCCCTACAGA 60.325 60.000 0.00 0.00 0.00 3.41
5451 6027 0.820871 CAGTCTCCAGCCCTACAGAC 59.179 60.000 0.00 0.00 36.32 3.51
5452 6028 0.324830 AGTCTCCAGCCCTACAGACC 60.325 60.000 0.00 0.00 36.68 3.85
5471 6047 0.448593 CGACGACTTCCTGTCTCCTC 59.551 60.000 0.00 0.00 43.25 3.71
5472 6048 0.812549 GACGACTTCCTGTCTCCTCC 59.187 60.000 0.00 0.00 43.25 4.30
5473 6049 0.406361 ACGACTTCCTGTCTCCTCCT 59.594 55.000 0.00 0.00 43.25 3.69
5474 6050 1.099689 CGACTTCCTGTCTCCTCCTC 58.900 60.000 0.00 0.00 43.25 3.71
5504 6080 2.833582 TCCGTCCATCGCTCTCCC 60.834 66.667 0.00 0.00 38.35 4.30
5505 6081 3.917760 CCGTCCATCGCTCTCCCC 61.918 72.222 0.00 0.00 38.35 4.81
5506 6082 3.917760 CGTCCATCGCTCTCCCCC 61.918 72.222 0.00 0.00 0.00 5.40
5543 6119 3.878667 CCGGGCCTCTGAATCCCC 61.879 72.222 0.84 3.36 36.69 4.81
5545 6121 2.378634 CGGGCCTCTGAATCCCCTT 61.379 63.158 0.84 0.00 36.69 3.95
5546 6122 1.228510 GGGCCTCTGAATCCCCTTG 59.771 63.158 0.84 0.00 34.59 3.61
5547 6123 1.454663 GGCCTCTGAATCCCCTTGC 60.455 63.158 0.00 0.00 0.00 4.01
5548 6124 1.611965 GCCTCTGAATCCCCTTGCT 59.388 57.895 0.00 0.00 0.00 3.91
5550 6126 0.182299 CCTCTGAATCCCCTTGCTCC 59.818 60.000 0.00 0.00 0.00 4.70
5551 6127 1.211456 CTCTGAATCCCCTTGCTCCT 58.789 55.000 0.00 0.00 0.00 3.69
5552 6128 1.140652 CTCTGAATCCCCTTGCTCCTC 59.859 57.143 0.00 0.00 0.00 3.71
5554 6130 0.253347 TGAATCCCCTTGCTCCTCCT 60.253 55.000 0.00 0.00 0.00 3.69
5555 6131 0.922626 GAATCCCCTTGCTCCTCCTT 59.077 55.000 0.00 0.00 0.00 3.36
5573 6166 2.202987 CCGAGGAGGCAGCACATC 60.203 66.667 0.00 0.00 0.00 3.06
5574 6167 2.580815 CGAGGAGGCAGCACATCA 59.419 61.111 0.00 0.00 0.00 3.07
5575 6168 1.521010 CGAGGAGGCAGCACATCAG 60.521 63.158 0.00 0.00 0.00 2.90
5578 6171 1.453379 GGAGGCAGCACATCAGCAT 60.453 57.895 0.00 0.00 36.85 3.79
5580 6173 0.746923 GAGGCAGCACATCAGCATCA 60.747 55.000 0.00 0.00 37.82 3.07
5594 6187 1.227060 CATCAGCGGCGTGATCTGA 60.227 57.895 15.43 15.43 40.62 3.27
5597 6190 1.953138 CAGCGGCGTGATCTGATCC 60.953 63.158 14.71 5.76 0.00 3.36
5609 6202 1.681538 TCTGATCCGGTCTGCTAGAC 58.318 55.000 0.00 7.52 44.32 2.59
5616 6209 3.560826 GGTCTGCTAGACTGATCGC 57.439 57.895 13.59 0.00 44.46 4.58
5735 6328 3.157252 GAGCGAGCCCTCCATCCA 61.157 66.667 0.00 0.00 0.00 3.41
5754 6351 2.185350 CACCGTCCAGCTAGCCAG 59.815 66.667 12.13 4.25 0.00 4.85
5761 6358 2.806009 CCAGCTAGCCAGGCTCCTC 61.806 68.421 20.38 8.37 40.44 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.186656 AAAGAACGACCCACCCCCG 62.187 63.158 0.00 0.00 0.00 5.73
11 12 1.602605 CAAAGAACGACCCACCCCC 60.603 63.158 0.00 0.00 0.00 5.40
12 13 1.602605 CCAAAGAACGACCCACCCC 60.603 63.158 0.00 0.00 0.00 4.95
13 14 1.602605 CCCAAAGAACGACCCACCC 60.603 63.158 0.00 0.00 0.00 4.61
14 15 1.602605 CCCCAAAGAACGACCCACC 60.603 63.158 0.00 0.00 0.00 4.61
15 16 1.602605 CCCCCAAAGAACGACCCAC 60.603 63.158 0.00 0.00 0.00 4.61
16 17 1.647334 AACCCCCAAAGAACGACCCA 61.647 55.000 0.00 0.00 0.00 4.51
17 18 0.468585 AAACCCCCAAAGAACGACCC 60.469 55.000 0.00 0.00 0.00 4.46
18 19 0.671796 CAAACCCCCAAAGAACGACC 59.328 55.000 0.00 0.00 0.00 4.79
19 20 1.066454 CACAAACCCCCAAAGAACGAC 59.934 52.381 0.00 0.00 0.00 4.34
20 21 1.064611 TCACAAACCCCCAAAGAACGA 60.065 47.619 0.00 0.00 0.00 3.85
21 22 1.336755 CTCACAAACCCCCAAAGAACG 59.663 52.381 0.00 0.00 0.00 3.95
22 23 2.384828 ACTCACAAACCCCCAAAGAAC 58.615 47.619 0.00 0.00 0.00 3.01
23 24 2.763448 CAACTCACAAACCCCCAAAGAA 59.237 45.455 0.00 0.00 0.00 2.52
24 25 2.291930 ACAACTCACAAACCCCCAAAGA 60.292 45.455 0.00 0.00 0.00 2.52
25 26 2.100749 GACAACTCACAAACCCCCAAAG 59.899 50.000 0.00 0.00 0.00 2.77
26 27 2.104170 GACAACTCACAAACCCCCAAA 58.896 47.619 0.00 0.00 0.00 3.28
27 28 1.006043 TGACAACTCACAAACCCCCAA 59.994 47.619 0.00 0.00 0.00 4.12
28 29 0.626382 TGACAACTCACAAACCCCCA 59.374 50.000 0.00 0.00 0.00 4.96
29 30 1.770294 TTGACAACTCACAAACCCCC 58.230 50.000 0.00 0.00 0.00 5.40
30 31 3.878160 TTTTGACAACTCACAAACCCC 57.122 42.857 0.00 0.00 36.06 4.95
48 49 7.255277 CCTCGTTCTCATCTTTCTTTCCTTTTT 60.255 37.037 0.00 0.00 0.00 1.94
49 50 6.205658 CCTCGTTCTCATCTTTCTTTCCTTTT 59.794 38.462 0.00 0.00 0.00 2.27
50 51 5.703130 CCTCGTTCTCATCTTTCTTTCCTTT 59.297 40.000 0.00 0.00 0.00 3.11
51 52 5.221742 ACCTCGTTCTCATCTTTCTTTCCTT 60.222 40.000 0.00 0.00 0.00 3.36
52 53 4.284746 ACCTCGTTCTCATCTTTCTTTCCT 59.715 41.667 0.00 0.00 0.00 3.36
53 54 4.570930 ACCTCGTTCTCATCTTTCTTTCC 58.429 43.478 0.00 0.00 0.00 3.13
54 55 7.653767 TTAACCTCGTTCTCATCTTTCTTTC 57.346 36.000 0.00 0.00 0.00 2.62
55 56 8.446599 TTTTAACCTCGTTCTCATCTTTCTTT 57.553 30.769 0.00 0.00 0.00 2.52
56 57 8.446599 TTTTTAACCTCGTTCTCATCTTTCTT 57.553 30.769 0.00 0.00 0.00 2.52
80 81 5.453339 GCTGAAGGTAAGCTTTTCCCTTTTT 60.453 40.000 19.68 8.45 37.43 1.94
81 82 4.039245 GCTGAAGGTAAGCTTTTCCCTTTT 59.961 41.667 19.68 8.71 37.43 2.27
82 83 3.574396 GCTGAAGGTAAGCTTTTCCCTTT 59.426 43.478 19.68 9.25 37.43 3.11
83 84 3.157881 GCTGAAGGTAAGCTTTTCCCTT 58.842 45.455 19.10 19.10 39.96 3.95
84 85 2.555448 GGCTGAAGGTAAGCTTTTCCCT 60.555 50.000 3.20 5.17 40.64 4.20
85 86 1.819288 GGCTGAAGGTAAGCTTTTCCC 59.181 52.381 3.20 2.56 40.64 3.97
86 87 1.468914 CGGCTGAAGGTAAGCTTTTCC 59.531 52.381 3.20 8.30 40.64 3.13
87 88 1.468914 CCGGCTGAAGGTAAGCTTTTC 59.531 52.381 3.20 3.03 40.64 2.29
88 89 1.534729 CCGGCTGAAGGTAAGCTTTT 58.465 50.000 3.20 0.00 40.64 2.27
132 133 2.279741 TGATCTGACGGTTATGCAAGC 58.720 47.619 0.00 0.00 0.00 4.01
182 183 3.642778 TAGCCGCGCAAGAGTGACC 62.643 63.158 8.75 0.00 43.02 4.02
187 188 0.737715 AAAGACTAGCCGCGCAAGAG 60.738 55.000 8.75 0.57 43.02 2.85
190 191 0.515564 GAAAAAGACTAGCCGCGCAA 59.484 50.000 8.75 0.00 0.00 4.85
191 192 0.320421 AGAAAAAGACTAGCCGCGCA 60.320 50.000 8.75 0.00 0.00 6.09
216 310 3.173953 TCTAGTGAAACCGGACCCTTA 57.826 47.619 9.46 0.00 37.80 2.69
217 311 2.019807 TCTAGTGAAACCGGACCCTT 57.980 50.000 9.46 0.00 37.80 3.95
224 318 6.399669 CGTGTTGTAGAAATCTAGTGAAACCG 60.400 42.308 0.00 0.00 37.80 4.44
225 319 6.128634 CCGTGTTGTAGAAATCTAGTGAAACC 60.129 42.308 0.00 0.00 37.80 3.27
232 326 5.326200 AGTCCCGTGTTGTAGAAATCTAG 57.674 43.478 0.00 0.00 0.00 2.43
233 327 5.948162 ACTAGTCCCGTGTTGTAGAAATCTA 59.052 40.000 0.00 0.00 0.00 1.98
242 336 2.696707 TCTGAAACTAGTCCCGTGTTGT 59.303 45.455 0.00 0.00 0.00 3.32
248 342 6.613755 TTTTTCTTTCTGAAACTAGTCCCG 57.386 37.500 0.00 0.00 43.55 5.14
271 365 2.292292 CCTTCACCACCGAATCGTTTTT 59.708 45.455 0.82 0.00 0.00 1.94
272 366 1.877443 CCTTCACCACCGAATCGTTTT 59.123 47.619 0.82 0.00 0.00 2.43
276 370 2.596904 ATACCTTCACCACCGAATCG 57.403 50.000 0.00 0.00 0.00 3.34
325 419 3.060272 CGCTGCAACTCGGACTATATTTG 60.060 47.826 0.00 0.00 0.00 2.32
329 423 0.248907 GCGCTGCAACTCGGACTATA 60.249 55.000 0.00 0.00 0.00 1.31
334 428 4.742201 GAGGCGCTGCAACTCGGA 62.742 66.667 7.64 0.00 0.00 4.55
350 444 3.238788 TGTCTAACCACTCACTCCTGA 57.761 47.619 0.00 0.00 0.00 3.86
365 476 3.679502 CACGTCTCATGTTGCAATGTCTA 59.320 43.478 0.59 0.00 0.00 2.59
404 515 1.197721 CTTCTTCGGCGTTTTCTGCAT 59.802 47.619 6.85 0.00 0.00 3.96
407 518 0.451135 CGCTTCTTCGGCGTTTTCTG 60.451 55.000 6.85 0.00 46.37 3.02
408 519 1.860078 CGCTTCTTCGGCGTTTTCT 59.140 52.632 6.85 0.00 46.37 2.52
474 590 4.135153 TCAGCTCCGCGAGAAGCC 62.135 66.667 19.76 6.86 44.76 4.35
486 602 1.077068 CTCCTCCTCCGTCTCAGCT 60.077 63.158 0.00 0.00 0.00 4.24
524 640 0.981943 CGGGGGAACTAGTCCTTGTT 59.018 55.000 0.00 0.00 46.92 2.83
598 718 2.279517 CGCCGTCCTGACATAGCC 60.280 66.667 0.00 0.00 0.00 3.93
642 763 1.535462 CTTACTTCCTGCAACAACCGG 59.465 52.381 0.00 0.00 0.00 5.28
707 842 0.744771 GGAGCTCCGTTGGATCAACC 60.745 60.000 19.06 0.00 40.82 3.77
751 886 4.095483 CGACTTGATAGGCTGCATCTTTTT 59.905 41.667 0.50 0.00 0.00 1.94
752 887 3.624861 CGACTTGATAGGCTGCATCTTTT 59.375 43.478 0.50 0.00 0.00 2.27
753 888 3.201290 CGACTTGATAGGCTGCATCTTT 58.799 45.455 0.50 0.00 0.00 2.52
754 889 2.169352 ACGACTTGATAGGCTGCATCTT 59.831 45.455 0.50 0.00 0.00 2.40
755 890 1.759445 ACGACTTGATAGGCTGCATCT 59.241 47.619 0.50 0.00 0.00 2.90
756 891 2.231215 ACGACTTGATAGGCTGCATC 57.769 50.000 0.50 0.00 0.00 3.91
757 892 2.695666 AGTACGACTTGATAGGCTGCAT 59.304 45.455 0.50 0.00 0.00 3.96
758 893 2.100197 AGTACGACTTGATAGGCTGCA 58.900 47.619 0.50 0.00 0.00 4.41
759 894 2.464865 CAGTACGACTTGATAGGCTGC 58.535 52.381 0.00 0.00 0.00 5.25
760 895 2.223829 CCCAGTACGACTTGATAGGCTG 60.224 54.545 0.00 0.00 0.00 4.85
761 896 2.032620 CCCAGTACGACTTGATAGGCT 58.967 52.381 0.00 0.00 0.00 4.58
762 897 1.538419 GCCCAGTACGACTTGATAGGC 60.538 57.143 0.00 0.00 0.00 3.93
763 898 1.068741 GGCCCAGTACGACTTGATAGG 59.931 57.143 0.00 0.00 0.00 2.57
764 899 1.754803 TGGCCCAGTACGACTTGATAG 59.245 52.381 0.00 0.00 0.00 2.08
765 900 1.855295 TGGCCCAGTACGACTTGATA 58.145 50.000 0.00 0.00 0.00 2.15
766 901 1.134401 CATGGCCCAGTACGACTTGAT 60.134 52.381 0.00 0.00 0.00 2.57
767 902 0.249120 CATGGCCCAGTACGACTTGA 59.751 55.000 0.00 0.00 0.00 3.02
768 903 1.369091 GCATGGCCCAGTACGACTTG 61.369 60.000 0.00 0.00 0.00 3.16
769 904 1.078426 GCATGGCCCAGTACGACTT 60.078 57.895 0.00 0.00 0.00 3.01
770 905 2.584608 GCATGGCCCAGTACGACT 59.415 61.111 0.00 0.00 0.00 4.18
771 906 2.890474 CGCATGGCCCAGTACGAC 60.890 66.667 0.00 0.00 0.00 4.34
772 907 3.387091 ACGCATGGCCCAGTACGA 61.387 61.111 0.00 0.00 0.00 3.43
773 908 3.195002 CACGCATGGCCCAGTACG 61.195 66.667 0.00 0.00 0.00 3.67
774 909 2.824041 CCACGCATGGCCCAGTAC 60.824 66.667 0.00 0.00 39.82 2.73
833 968 3.073735 CTCCTGGCCACGAGCTCT 61.074 66.667 17.34 0.00 43.05 4.09
885 1020 0.678048 CAAGGAAGGAAGGAAGGCGG 60.678 60.000 0.00 0.00 0.00 6.13
894 1029 1.758592 CCCGTGGACAAGGAAGGAA 59.241 57.895 5.83 0.00 31.21 3.36
895 1030 2.221299 CCCCGTGGACAAGGAAGGA 61.221 63.158 5.83 0.00 31.21 3.36
896 1031 2.351276 CCCCGTGGACAAGGAAGG 59.649 66.667 5.83 0.00 31.21 3.46
913 1053 2.583520 CAGCAGCAGAGTCCTCCC 59.416 66.667 0.00 0.00 0.00 4.30
939 1079 2.444766 AGGAATGGAATGGAGATGGGAC 59.555 50.000 0.00 0.00 0.00 4.46
942 1082 3.752665 CTGAGGAATGGAATGGAGATGG 58.247 50.000 0.00 0.00 0.00 3.51
943 1083 3.147629 GCTGAGGAATGGAATGGAGATG 58.852 50.000 0.00 0.00 0.00 2.90
944 1084 2.781757 TGCTGAGGAATGGAATGGAGAT 59.218 45.455 0.00 0.00 0.00 2.75
945 1085 2.172082 CTGCTGAGGAATGGAATGGAGA 59.828 50.000 0.00 0.00 0.00 3.71
978 1120 1.464608 GCTCTCTCTGATCCGATCTCG 59.535 57.143 9.78 1.64 39.44 4.04
1069 1253 0.462047 GTGATGGTGTAGGGCTTCCG 60.462 60.000 0.00 0.00 35.17 4.30
1167 1379 1.099689 GACAAGAGAGAGGGAGGTCG 58.900 60.000 0.00 0.00 0.00 4.79
1174 1386 1.265236 ACCAGCAGACAAGAGAGAGG 58.735 55.000 0.00 0.00 0.00 3.69
1175 1387 2.612471 CCAACCAGCAGACAAGAGAGAG 60.612 54.545 0.00 0.00 0.00 3.20
1176 1388 1.345741 CCAACCAGCAGACAAGAGAGA 59.654 52.381 0.00 0.00 0.00 3.10
1179 1391 0.607489 CCCCAACCAGCAGACAAGAG 60.607 60.000 0.00 0.00 0.00 2.85
1209 1429 0.469331 TCTGATCGGCCGGACCTAAT 60.469 55.000 27.83 10.35 35.61 1.73
1247 1471 1.300233 GAACCCGGCGATCTAGCAG 60.300 63.158 9.30 0.00 39.27 4.24
1265 1489 4.247380 GGGCTGGATCCTCGGCTG 62.247 72.222 21.34 0.00 38.94 4.85
1325 1556 6.009589 TCCAAATCAAAATCAACTAGGCAGA 58.990 36.000 0.00 0.00 0.00 4.26
1418 1662 6.438741 CCTAAGGAAGATATACATCCTGCTCA 59.561 42.308 4.63 0.00 44.63 4.26
1428 1674 5.513267 CCCAAGTGGCCTAAGGAAGATATAC 60.513 48.000 3.32 0.00 0.00 1.47
1432 1678 1.566231 CCCAAGTGGCCTAAGGAAGAT 59.434 52.381 3.32 0.00 0.00 2.40
1434 1680 3.577389 CCCAAGTGGCCTAAGGAAG 57.423 57.895 3.32 0.00 0.00 3.46
1506 1760 4.133078 GGATGGAGTGATGATTTCTGTCC 58.867 47.826 0.00 0.00 0.00 4.02
1508 1762 3.198635 ACGGATGGAGTGATGATTTCTGT 59.801 43.478 0.00 0.00 0.00 3.41
1510 1764 4.194640 CAACGGATGGAGTGATGATTTCT 58.805 43.478 0.00 0.00 0.00 2.52
1511 1765 3.242870 GCAACGGATGGAGTGATGATTTC 60.243 47.826 0.00 0.00 0.00 2.17
1532 1790 4.086547 GGCCCATGGTTTGCTGGC 62.087 66.667 11.73 4.58 41.42 4.85
1560 1819 4.923281 GGTGAAAAGATGGTGAAAATTCCG 59.077 41.667 0.00 0.00 0.00 4.30
1562 1821 7.967890 ATTGGTGAAAAGATGGTGAAAATTC 57.032 32.000 0.00 0.00 0.00 2.17
1563 1822 9.271828 GTAATTGGTGAAAAGATGGTGAAAATT 57.728 29.630 0.00 0.00 0.00 1.82
1569 1828 6.573664 TGAGTAATTGGTGAAAAGATGGTG 57.426 37.500 0.00 0.00 0.00 4.17
1589 1849 1.466167 CCGCTTGGTCAGAACAATGAG 59.534 52.381 0.00 0.00 0.00 2.90
1743 2125 4.077188 GTTGTCGCACGAGCCAGC 62.077 66.667 0.00 0.00 37.52 4.85
1744 2126 2.356313 AGTTGTCGCACGAGCCAG 60.356 61.111 0.00 0.00 37.52 4.85
1745 2127 2.636778 TTCAGTTGTCGCACGAGCCA 62.637 55.000 0.00 0.00 37.52 4.75
1754 2136 1.656095 GGAGAGCGATTTCAGTTGTCG 59.344 52.381 0.00 0.00 38.34 4.35
1774 2156 4.825422 ACAGACAGACAAGACCATACATG 58.175 43.478 0.00 0.00 0.00 3.21
1781 2163 1.068194 CGAGGACAGACAGACAAGACC 60.068 57.143 0.00 0.00 0.00 3.85
1782 2164 1.609555 ACGAGGACAGACAGACAAGAC 59.390 52.381 0.00 0.00 0.00 3.01
1783 2165 1.982660 ACGAGGACAGACAGACAAGA 58.017 50.000 0.00 0.00 0.00 3.02
1784 2166 2.802787 AACGAGGACAGACAGACAAG 57.197 50.000 0.00 0.00 0.00 3.16
1785 2167 3.220110 ACTAACGAGGACAGACAGACAA 58.780 45.455 0.00 0.00 0.00 3.18
1795 2177 7.261829 AGAGATACATGTAACTAACGAGGAC 57.738 40.000 14.92 1.68 0.00 3.85
1909 2291 5.580897 CTGAGCGCAGAACAGAGCATCTA 62.581 52.174 12.68 0.00 44.86 1.98
1910 2292 4.916675 CTGAGCGCAGAACAGAGCATCT 62.917 54.545 12.68 0.00 46.78 2.90
1912 2294 0.740164 CTGAGCGCAGAACAGAGCAT 60.740 55.000 12.68 0.00 45.17 3.79
1931 2318 1.878734 ACAGCAAAGAGAAGCAGAAGC 59.121 47.619 0.00 0.00 42.56 3.86
1943 2330 7.752239 CAGATGATAAGTAACCAAACAGCAAAG 59.248 37.037 0.00 0.00 0.00 2.77
1946 2334 6.371548 GTCAGATGATAAGTAACCAAACAGCA 59.628 38.462 0.00 0.00 0.00 4.41
1954 2342 8.552034 GCATACTTTGTCAGATGATAAGTAACC 58.448 37.037 17.19 11.19 37.46 2.85
1958 2346 9.539825 CTAAGCATACTTTGTCAGATGATAAGT 57.460 33.333 14.01 14.01 37.33 2.24
1959 2347 9.539825 ACTAAGCATACTTTGTCAGATGATAAG 57.460 33.333 0.00 6.27 37.29 1.73
1975 2363 5.285651 TGCAAACCAAACAACTAAGCATAC 58.714 37.500 0.00 0.00 0.00 2.39
2013 2402 8.844244 AGCAGATCTGGAAAATGTATTATCAAC 58.156 33.333 23.89 0.87 0.00 3.18
2015 2404 8.843262 CAAGCAGATCTGGAAAATGTATTATCA 58.157 33.333 23.89 0.00 0.00 2.15
2017 2406 7.781693 ACCAAGCAGATCTGGAAAATGTATTAT 59.218 33.333 23.89 0.00 0.00 1.28
2019 2408 5.954150 ACCAAGCAGATCTGGAAAATGTATT 59.046 36.000 23.89 0.00 0.00 1.89
2033 2452 4.612264 AAAAGATTGCAACCAAGCAGAT 57.388 36.364 0.00 0.00 46.54 2.90
2038 2457 5.717119 AGCAGATAAAAGATTGCAACCAAG 58.283 37.500 0.00 0.00 38.97 3.61
2048 2467 7.277539 CGTTCAGAGAAGAAGCAGATAAAAGAT 59.722 37.037 0.00 0.00 0.00 2.40
2138 2560 6.761242 TGTCAGACGCAAATATATAAGCAAGT 59.239 34.615 9.25 1.52 0.00 3.16
2142 2564 7.584123 CAGTTTGTCAGACGCAAATATATAAGC 59.416 37.037 0.00 0.00 38.00 3.09
2155 2577 1.151777 ACCGCACAGTTTGTCAGACG 61.152 55.000 0.00 0.00 0.00 4.18
2157 2579 0.176910 TCACCGCACAGTTTGTCAGA 59.823 50.000 0.00 0.00 0.00 3.27
2198 2620 1.153025 TGCATGGCTCCTGATCTGC 60.153 57.895 0.00 0.00 0.00 4.26
2240 2662 1.003580 TGCTCACCTGTCCCATTCTTC 59.996 52.381 0.00 0.00 0.00 2.87
2249 2671 1.451028 GGGCAGATGCTCACCTGTC 60.451 63.158 4.59 0.00 42.27 3.51
2267 2689 2.435693 CCTCTTCGGCCTAGGTGGG 61.436 68.421 11.31 0.00 36.00 4.61
2334 2756 0.779997 ATGAGGGGTGGAAAGTGCTT 59.220 50.000 0.00 0.00 0.00 3.91
2335 2757 0.329596 GATGAGGGGTGGAAAGTGCT 59.670 55.000 0.00 0.00 0.00 4.40
2336 2758 0.329596 AGATGAGGGGTGGAAAGTGC 59.670 55.000 0.00 0.00 0.00 4.40
2339 2761 1.912043 AGTCAGATGAGGGGTGGAAAG 59.088 52.381 0.00 0.00 0.00 2.62
2343 2765 1.486726 GGTTAGTCAGATGAGGGGTGG 59.513 57.143 0.00 0.00 0.00 4.61
2346 2768 2.752030 TCAGGTTAGTCAGATGAGGGG 58.248 52.381 0.00 0.00 0.00 4.79
2394 2816 3.683847 GCAGGAGCTCCAAGATGTTATGT 60.684 47.826 33.90 6.20 38.89 2.29
2395 2817 2.877168 GCAGGAGCTCCAAGATGTTATG 59.123 50.000 33.90 20.17 38.89 1.90
2396 2818 2.507058 TGCAGGAGCTCCAAGATGTTAT 59.493 45.455 33.90 7.59 42.74 1.89
2397 2819 1.908619 TGCAGGAGCTCCAAGATGTTA 59.091 47.619 33.90 13.72 42.74 2.41
2399 2821 0.252479 CTGCAGGAGCTCCAAGATGT 59.748 55.000 33.90 10.03 42.74 3.06
2400 2822 1.096386 GCTGCAGGAGCTCCAAGATG 61.096 60.000 33.90 23.38 45.21 2.90
2441 2863 1.812922 CACGACATGAGGAGGCTGC 60.813 63.158 0.00 0.00 0.00 5.25
2468 2890 3.432252 GTGCATCCATAGGTATAACACGC 59.568 47.826 0.00 0.00 0.00 5.34
2469 2891 3.994392 GGTGCATCCATAGGTATAACACG 59.006 47.826 0.00 0.00 35.97 4.49
2473 2895 6.082031 ACAGTAGGTGCATCCATAGGTATAA 58.918 40.000 0.00 0.00 39.02 0.98
2522 2944 1.354368 TCCCAGGAAGGAAATGTGTCC 59.646 52.381 0.00 0.00 41.22 4.02
2558 2980 4.719773 TGTGTATGTCTTGGGCTATAAGGT 59.280 41.667 0.00 0.00 0.00 3.50
2588 3010 3.546002 TGCGGTAGTTAACACAATTGC 57.454 42.857 8.61 4.69 0.00 3.56
2664 3087 0.797249 CGCCTAAGTCTGTCGGTTCG 60.797 60.000 0.00 0.00 0.00 3.95
2676 3099 3.499918 AGCTATTATTTGCAGCGCCTAAG 59.500 43.478 2.29 0.00 40.29 2.18
2731 3154 0.661552 CCAATCGCATCAGAAGCTGG 59.338 55.000 0.00 0.00 31.51 4.85
2734 3157 1.358046 GCCCAATCGCATCAGAAGC 59.642 57.895 0.00 0.00 0.00 3.86
2750 3173 2.549064 AGTTGGCCAAATTTCTTGCC 57.451 45.000 22.47 13.50 44.27 4.52
2759 3182 1.861542 CGCATCGGAAGTTGGCCAAA 61.862 55.000 22.47 3.18 0.00 3.28
2806 3229 2.555325 CAAAGAGAAGCTCACCATGCAA 59.445 45.455 0.00 0.00 32.06 4.08
3016 3439 4.578871 TGAATGTGACCGATTGATCAACT 58.421 39.130 11.07 0.00 0.00 3.16
3018 3441 6.513806 AAATGAATGTGACCGATTGATCAA 57.486 33.333 11.26 11.26 0.00 2.57
3137 3560 9.474313 AAATAATGAATGGAGTTAAACTAGCCA 57.526 29.630 0.00 0.00 0.00 4.75
3174 3599 2.804527 CACACTGATTGACACCAGACTG 59.195 50.000 10.14 0.00 34.65 3.51
3199 3626 4.319177 CTCCAACAGAGTTAAACAGGGAG 58.681 47.826 0.00 0.00 37.87 4.30
3329 3756 6.925610 ACGAAATACTGCACATCATTACAT 57.074 33.333 0.00 0.00 0.00 2.29
3351 3778 4.532834 TCAAGGCCATCAAAGGGTAATAC 58.467 43.478 5.01 0.00 0.00 1.89
3377 3804 7.071014 ACCAAAAACATGAACACATTGTTTC 57.929 32.000 0.00 0.00 41.28 2.78
3380 3807 8.729805 ATAAACCAAAAACATGAACACATTGT 57.270 26.923 0.00 0.00 0.00 2.71
3390 3817 6.758254 AGGGAACTGATAAACCAAAAACATG 58.242 36.000 0.00 0.00 41.13 3.21
3392 3819 7.947890 AGATAGGGAACTGATAAACCAAAAACA 59.052 33.333 0.00 0.00 43.88 2.83
3393 3820 8.244113 CAGATAGGGAACTGATAAACCAAAAAC 58.756 37.037 0.00 0.00 43.88 2.43
3592 4019 3.887716 AGCAGGGCAGATGAATCAATTAC 59.112 43.478 0.00 0.00 0.00 1.89
3626 4053 3.194116 TGGCCTTCATTCTTGCAGAAATC 59.806 43.478 3.32 0.00 37.82 2.17
3638 4065 1.613437 CAAAACGACCTGGCCTTCATT 59.387 47.619 3.32 0.00 0.00 2.57
3653 4080 7.054855 TGTCACTAAACAATGCAAACAAAAC 57.945 32.000 0.00 0.00 0.00 2.43
3762 4193 8.607713 TGAGTAATTAAACTTCACCCCAGAATA 58.392 33.333 0.00 0.00 0.00 1.75
3876 4307 6.506827 CGACTTGCAAAAGAATGAACAAAGTG 60.507 38.462 0.00 0.00 0.00 3.16
4022 4453 1.371558 GTGTCTCAAAGTCCGGGCT 59.628 57.895 0.35 0.35 0.00 5.19
4056 4487 3.004734 AGGTGGCATGAAAGAAAAACGAG 59.995 43.478 0.00 0.00 0.00 4.18
4058 4489 3.052036 CAGGTGGCATGAAAGAAAAACG 58.948 45.455 0.00 0.00 0.00 3.60
4059 4490 2.802247 GCAGGTGGCATGAAAGAAAAAC 59.198 45.455 0.00 0.00 43.97 2.43
4126 4557 4.332543 CAGTGTCAGCTACTTTGTTCACAA 59.667 41.667 0.00 0.00 0.00 3.33
4130 4561 3.059325 CAGCAGTGTCAGCTACTTTGTTC 60.059 47.826 0.00 0.00 41.14 3.18
4149 4580 3.369451 GCAAGCTACTTCTGTTCTACAGC 59.631 47.826 1.98 0.00 45.54 4.40
4192 4623 2.028130 TGTCGGCATGGAAAACAGTTT 58.972 42.857 0.00 0.00 0.00 2.66
4195 4626 0.109597 GCTGTCGGCATGGAAAACAG 60.110 55.000 0.00 0.00 41.35 3.16
4273 4705 2.095059 AGTTGCGGCAGATTCACAAATC 60.095 45.455 1.67 0.00 41.43 2.17
4298 4730 6.028146 TCAAAGCTAACGGATTAGTACACA 57.972 37.500 0.00 0.00 40.13 3.72
4299 4731 6.810182 TCTTCAAAGCTAACGGATTAGTACAC 59.190 38.462 0.00 0.00 40.13 2.90
4300 4732 6.927416 TCTTCAAAGCTAACGGATTAGTACA 58.073 36.000 0.00 0.00 40.13 2.90
4311 4743 8.746751 GTCACAAAAAGAATCTTCAAAGCTAAC 58.253 33.333 0.00 0.00 0.00 2.34
4318 4750 7.970061 CAGAACAGTCACAAAAAGAATCTTCAA 59.030 33.333 0.00 0.00 0.00 2.69
4319 4751 7.336679 TCAGAACAGTCACAAAAAGAATCTTCA 59.663 33.333 0.00 0.00 0.00 3.02
4360 4793 2.171027 TGGAGTGGAACGTAACTGGTTT 59.829 45.455 3.45 0.00 45.86 3.27
4370 4803 1.672030 TGCAGCATGGAGTGGAACG 60.672 57.895 0.00 0.00 38.48 3.95
4372 4805 0.038599 ATGTGCAGCATGGAGTGGAA 59.961 50.000 0.00 0.00 36.81 3.53
4391 4824 9.778741 ATAACAGGATAGCAAAGATTCGATTAA 57.221 29.630 0.00 0.00 0.00 1.40
4419 4935 7.823799 ACCATCCTGCCATTTACTTTTATTTTG 59.176 33.333 0.00 0.00 0.00 2.44
4458 4974 3.366374 GCTTCATTACTGACAAAGCACCC 60.366 47.826 3.04 0.00 34.36 4.61
4537 5055 4.704057 AGCTGGATTTCCAAGAAAGATGAC 59.296 41.667 0.18 0.00 46.97 3.06
4573 5091 1.002868 CCTCTGCAACAGTCAGGGG 60.003 63.158 0.00 0.00 44.90 4.79
4719 5244 1.200483 AATTAGCGATGTCGTGAGCG 58.800 50.000 4.20 0.00 42.22 5.03
4741 5266 2.511600 GCGGTCCATGCGCTTAGT 60.512 61.111 9.73 0.00 0.00 2.24
4777 5303 2.159338 TGTACCGTACGCTTTCCTCATC 60.159 50.000 10.49 0.00 0.00 2.92
4784 5310 2.352503 AACGATGTACCGTACGCTTT 57.647 45.000 10.49 0.00 42.54 3.51
4785 5311 2.161410 TGTAACGATGTACCGTACGCTT 59.839 45.455 10.49 0.80 42.54 4.68
4788 5314 4.097714 ACAATGTAACGATGTACCGTACG 58.902 43.478 8.69 8.69 42.54 3.67
4790 5316 5.468592 ACAACAATGTAACGATGTACCGTA 58.531 37.500 0.00 0.00 38.40 4.02
4793 5319 5.849357 TGACAACAATGTAACGATGTACC 57.151 39.130 0.00 0.00 40.74 3.34
4795 5321 7.485418 ACTTTGACAACAATGTAACGATGTA 57.515 32.000 0.00 0.00 40.74 2.29
4796 5322 6.371809 ACTTTGACAACAATGTAACGATGT 57.628 33.333 0.00 0.00 40.74 3.06
4797 5323 6.344936 GCAACTTTGACAACAATGTAACGATG 60.345 38.462 0.00 0.00 41.36 3.84
4798 5324 5.685511 GCAACTTTGACAACAATGTAACGAT 59.314 36.000 0.00 0.00 41.36 3.73
4799 5325 5.031578 GCAACTTTGACAACAATGTAACGA 58.968 37.500 0.00 0.00 41.36 3.85
4800 5326 4.086327 CGCAACTTTGACAACAATGTAACG 60.086 41.667 0.00 0.00 41.36 3.18
4801 5327 5.031578 TCGCAACTTTGACAACAATGTAAC 58.968 37.500 0.00 0.00 41.36 2.50
4802 5328 5.031578 GTCGCAACTTTGACAACAATGTAA 58.968 37.500 0.00 0.00 41.36 2.41
4816 5342 3.913548 TGCATTAACATGTCGCAACTT 57.086 38.095 0.00 0.00 32.28 2.66
4819 5345 2.790812 GCGATGCATTAACATGTCGCAA 60.791 45.455 18.98 5.00 46.56 4.85
4831 5357 1.032014 AAAATAGGCGGCGATGCATT 58.968 45.000 12.98 0.39 36.28 3.56
4832 5358 1.032014 AAAAATAGGCGGCGATGCAT 58.968 45.000 12.98 0.00 36.28 3.96
4833 5359 0.100325 CAAAAATAGGCGGCGATGCA 59.900 50.000 12.98 0.00 36.28 3.96
4841 5367 8.402472 TCCAAGAAATATGTACAAAAATAGGCG 58.598 33.333 0.00 0.00 0.00 5.52
4859 5423 2.615493 GCCCGAGAACATCTCCAAGAAA 60.615 50.000 1.98 0.00 40.34 2.52
4887 5451 3.552875 GGATAGGTAAAAGTTCCCAGGC 58.447 50.000 0.00 0.00 0.00 4.85
4888 5452 3.433173 CCGGATAGGTAAAAGTTCCCAGG 60.433 52.174 0.00 0.00 34.51 4.45
4889 5453 3.805207 CCGGATAGGTAAAAGTTCCCAG 58.195 50.000 0.00 0.00 34.51 4.45
4902 5466 1.149174 ATGCCACAAGCCGGATAGG 59.851 57.895 5.05 2.93 42.71 2.57
4908 5472 1.867233 GACTATACATGCCACAAGCCG 59.133 52.381 0.00 0.00 42.71 5.52
4910 5474 2.874701 CCTGACTATACATGCCACAAGC 59.125 50.000 0.00 0.00 44.14 4.01
4987 5560 2.169769 ACACAAGAACGGTCTTCCTTCA 59.830 45.455 14.12 0.00 42.45 3.02
5035 5608 5.312895 TCATCTCGAAACAATCCCTCAAAA 58.687 37.500 0.00 0.00 0.00 2.44
5036 5609 4.905429 TCATCTCGAAACAATCCCTCAAA 58.095 39.130 0.00 0.00 0.00 2.69
5037 5610 4.551702 TCATCTCGAAACAATCCCTCAA 57.448 40.909 0.00 0.00 0.00 3.02
5038 5611 4.760530 ATCATCTCGAAACAATCCCTCA 57.239 40.909 0.00 0.00 0.00 3.86
5039 5612 6.127897 ACAAAATCATCTCGAAACAATCCCTC 60.128 38.462 0.00 0.00 0.00 4.30
5040 5613 5.711976 ACAAAATCATCTCGAAACAATCCCT 59.288 36.000 0.00 0.00 0.00 4.20
5041 5614 5.954335 ACAAAATCATCTCGAAACAATCCC 58.046 37.500 0.00 0.00 0.00 3.85
5042 5615 7.382218 ACAAACAAAATCATCTCGAAACAATCC 59.618 33.333 0.00 0.00 0.00 3.01
5043 5616 8.285776 ACAAACAAAATCATCTCGAAACAATC 57.714 30.769 0.00 0.00 0.00 2.67
5044 5617 9.743057 TTACAAACAAAATCATCTCGAAACAAT 57.257 25.926 0.00 0.00 0.00 2.71
5045 5618 9.232082 CTTACAAACAAAATCATCTCGAAACAA 57.768 29.630 0.00 0.00 0.00 2.83
5046 5619 8.402472 ACTTACAAACAAAATCATCTCGAAACA 58.598 29.630 0.00 0.00 0.00 2.83
5047 5620 8.782533 ACTTACAAACAAAATCATCTCGAAAC 57.217 30.769 0.00 0.00 0.00 2.78
5048 5621 8.836413 AGACTTACAAACAAAATCATCTCGAAA 58.164 29.630 0.00 0.00 0.00 3.46
5049 5622 8.378172 AGACTTACAAACAAAATCATCTCGAA 57.622 30.769 0.00 0.00 0.00 3.71
5050 5623 7.962964 AGACTTACAAACAAAATCATCTCGA 57.037 32.000 0.00 0.00 0.00 4.04
5126 5701 3.306818 AGTAGACAACGAGACGAAAAGC 58.693 45.455 0.00 0.00 0.00 3.51
5140 5715 5.893687 TGAACACGAACTACAAAGTAGACA 58.106 37.500 10.87 0.00 33.75 3.41
5141 5716 6.639686 TGATGAACACGAACTACAAAGTAGAC 59.360 38.462 10.87 4.27 33.75 2.59
5142 5717 6.741109 TGATGAACACGAACTACAAAGTAGA 58.259 36.000 10.87 0.00 33.75 2.59
5146 5721 9.265938 CATTATTGATGAACACGAACTACAAAG 57.734 33.333 0.00 0.00 38.03 2.77
5147 5722 8.779303 ACATTATTGATGAACACGAACTACAAA 58.221 29.630 0.00 0.00 39.15 2.83
5148 5723 8.317891 ACATTATTGATGAACACGAACTACAA 57.682 30.769 0.00 0.00 39.15 2.41
5150 5725 9.607285 AAAACATTATTGATGAACACGAACTAC 57.393 29.630 0.00 0.00 39.15 2.73
5151 5726 9.820229 GAAAACATTATTGATGAACACGAACTA 57.180 29.630 0.00 0.00 39.15 2.24
5153 5728 8.728088 AGAAAACATTATTGATGAACACGAAC 57.272 30.769 0.00 0.00 39.15 3.95
5154 5729 8.563732 TGAGAAAACATTATTGATGAACACGAA 58.436 29.630 0.00 0.00 39.15 3.85
5155 5730 8.093659 TGAGAAAACATTATTGATGAACACGA 57.906 30.769 0.00 0.00 39.15 4.35
5156 5731 8.726650 TTGAGAAAACATTATTGATGAACACG 57.273 30.769 0.00 0.00 39.15 4.49
5159 5734 9.773328 TCGATTGAGAAAACATTATTGATGAAC 57.227 29.630 0.00 0.00 39.15 3.18
5177 5752 9.992910 TGACTTGATTATCATTTTTCGATTGAG 57.007 29.630 0.00 0.00 0.00 3.02
5203 5778 6.316140 TCGCAAAATGTTACTAGCTGATTGAT 59.684 34.615 0.00 0.00 0.00 2.57
5215 5790 6.904543 ACAAAGCAATTTTCGCAAAATGTTAC 59.095 30.769 7.36 0.00 40.05 2.50
5218 5793 5.482686 ACAAAGCAATTTTCGCAAAATGT 57.517 30.435 7.36 1.17 40.05 2.71
5256 5831 5.774690 TGAAGTAGCCAATCAAGTCCATTTT 59.225 36.000 0.00 0.00 0.00 1.82
5259 5834 4.225942 TCTGAAGTAGCCAATCAAGTCCAT 59.774 41.667 0.00 0.00 0.00 3.41
5309 5885 6.848069 TCCTTCCTTTGACTCCATTCTAAAA 58.152 36.000 0.00 0.00 0.00 1.52
5316 5892 3.796111 TCTCTCCTTCCTTTGACTCCAT 58.204 45.455 0.00 0.00 0.00 3.41
5330 5906 0.178958 ACGACCACCACTTCTCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
5365 5941 4.864334 CTGCTGGGCCGGATGGAC 62.864 72.222 18.84 0.00 45.75 4.02
5389 5965 2.113807 GTGGGTAGTGGGTAGGGTTAG 58.886 57.143 0.00 0.00 0.00 2.34
5414 5990 2.146998 CTGGGGTAGGTAGGGTAGGTA 58.853 57.143 0.00 0.00 0.00 3.08
5415 5991 0.939698 CTGGGGTAGGTAGGGTAGGT 59.060 60.000 0.00 0.00 0.00 3.08
5416 5992 0.939698 ACTGGGGTAGGTAGGGTAGG 59.060 60.000 0.00 0.00 0.00 3.18
5417 5993 1.858246 AGACTGGGGTAGGTAGGGTAG 59.142 57.143 0.00 0.00 0.00 3.18
5418 5994 1.855599 GAGACTGGGGTAGGTAGGGTA 59.144 57.143 0.00 0.00 0.00 3.69
5419 5995 0.635555 GAGACTGGGGTAGGTAGGGT 59.364 60.000 0.00 0.00 0.00 4.34
5420 5996 0.105607 GGAGACTGGGGTAGGTAGGG 60.106 65.000 0.00 0.00 0.00 3.53
5436 6012 1.379977 TCGGTCTGTAGGGCTGGAG 60.380 63.158 0.00 0.00 0.00 3.86
5437 6013 1.681327 GTCGGTCTGTAGGGCTGGA 60.681 63.158 0.00 0.00 0.00 3.86
5447 6023 0.109689 GACAGGAAGTCGTCGGTCTG 60.110 60.000 0.00 0.00 37.53 3.51
5449 6025 4.863984 GACAGGAAGTCGTCGGTC 57.136 61.111 0.00 0.00 37.53 4.79
5525 6101 4.570874 GGGATTCAGAGGCCCGGC 62.571 72.222 0.00 0.00 31.06 6.13
5528 6104 1.228510 CAAGGGGATTCAGAGGCCC 59.771 63.158 0.00 0.00 41.28 5.80
5531 6107 0.182299 GGAGCAAGGGGATTCAGAGG 59.818 60.000 0.00 0.00 0.00 3.69
5536 6112 0.922626 AAGGAGGAGCAAGGGGATTC 59.077 55.000 0.00 0.00 0.00 2.52
5552 6128 3.393970 TGCTGCCTCCTCGGAAGG 61.394 66.667 0.00 0.00 39.10 3.46
5554 6130 2.244117 GATGTGCTGCCTCCTCGGAA 62.244 60.000 0.00 0.00 33.16 4.30
5555 6131 2.685017 ATGTGCTGCCTCCTCGGA 60.685 61.111 0.00 0.00 33.16 4.55
5573 6166 2.879070 GATCACGCCGCTGATGCTG 61.879 63.158 9.25 0.00 36.97 4.41
5574 6167 2.587194 GATCACGCCGCTGATGCT 60.587 61.111 9.25 0.00 36.97 3.79
5575 6168 2.587194 AGATCACGCCGCTGATGC 60.587 61.111 9.25 3.61 30.62 3.91
5578 6171 1.066422 GATCAGATCACGCCGCTGA 59.934 57.895 5.44 0.00 42.25 4.26
5580 6173 2.419198 GGATCAGATCACGCCGCT 59.581 61.111 12.66 0.00 0.00 5.52
5594 6187 2.235016 GATCAGTCTAGCAGACCGGAT 58.765 52.381 9.46 14.82 46.18 4.18
5597 6190 0.317436 GCGATCAGTCTAGCAGACCG 60.317 60.000 11.24 9.27 46.18 4.79
5609 6202 2.591571 TGGAGTGAATGAGCGATCAG 57.408 50.000 10.08 0.00 0.00 2.90
5616 6209 3.002042 GCGTCATCAATGGAGTGAATGAG 59.998 47.826 0.00 0.00 0.00 2.90
5726 6319 2.584608 GACGGTGGTGGATGGAGG 59.415 66.667 0.00 0.00 0.00 4.30
5727 6320 2.244117 CTGGACGGTGGTGGATGGAG 62.244 65.000 0.00 0.00 0.00 3.86
5728 6321 2.203862 TGGACGGTGGTGGATGGA 60.204 61.111 0.00 0.00 0.00 3.41
5730 6323 1.613317 TAGCTGGACGGTGGTGGATG 61.613 60.000 0.00 0.00 0.00 3.51
5731 6324 1.305802 TAGCTGGACGGTGGTGGAT 60.306 57.895 0.00 0.00 0.00 3.41
5732 6325 1.982395 CTAGCTGGACGGTGGTGGA 60.982 63.158 0.00 0.00 0.00 4.02
5735 6328 3.391382 GGCTAGCTGGACGGTGGT 61.391 66.667 15.72 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.