Multiple sequence alignment - TraesCS4A01G474000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G474000 chr4A 100.000 3932 0 0 1 3932 733696306 733692375 0.000000e+00 7262
1 TraesCS4A01G474000 chr7D 90.953 1437 92 20 1797 3232 6484629 6486028 0.000000e+00 1899
2 TraesCS4A01G474000 chr7D 83.051 1121 86 47 273 1344 6482681 6483746 0.000000e+00 922
3 TraesCS4A01G474000 chr7D 87.665 454 31 9 1354 1784 6483970 6484421 4.530000e-139 505
4 TraesCS4A01G474000 chr7D 86.103 331 37 9 3325 3651 6486214 6486539 8.090000e-92 348
5 TraesCS4A01G474000 chr7D 84.553 246 25 8 35 267 6482458 6482703 8.500000e-57 231
6 TraesCS4A01G474000 chr7A 89.896 1445 107 22 1797 3232 7599218 7600632 0.000000e+00 1823
7 TraesCS4A01G474000 chr7A 82.982 1281 111 51 541 1784 7597928 7599138 0.000000e+00 1059
8 TraesCS4A01G474000 chr7A 84.646 254 34 5 3348 3598 7601298 7601549 8.440000e-62 248
9 TraesCS4A01G474000 chr2B 81.119 143 21 5 3380 3518 708551953 708552093 4.150000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G474000 chr4A 733692375 733696306 3931 True 7262.000000 7262 100.000000 1 3932 1 chr4A.!!$R1 3931
1 TraesCS4A01G474000 chr7D 6482458 6486539 4081 False 781.000000 1899 86.465000 35 3651 5 chr7D.!!$F1 3616
2 TraesCS4A01G474000 chr7A 7597928 7601549 3621 False 1043.333333 1823 85.841333 541 3598 3 chr7A.!!$F1 3057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 662 0.252558 CTACCCACTACCCACCACCT 60.253 60.0 0.0 0.0 0.00 4.00 F
1164 1212 0.038166 ACCACAGCCCTGTTACATGG 59.962 55.0 2.2 2.2 42.83 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1642 1955 0.321671 TTCTTGGAGCCGGAGAACTG 59.678 55.0 5.05 0.0 0.00 3.16 R
2961 3477 0.383491 CGCACACAGCAAGAACGAAG 60.383 55.0 0.00 0.0 46.13 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.301577 AGCAGATGAGGAAAGCGTAC 57.698 50.000 0.00 0.00 0.00 3.67
20 21 0.924090 GCAGATGAGGAAAGCGTACG 59.076 55.000 11.84 11.84 0.00 3.67
21 22 1.560923 CAGATGAGGAAAGCGTACGG 58.439 55.000 18.39 0.00 0.00 4.02
22 23 1.135083 CAGATGAGGAAAGCGTACGGT 60.135 52.381 15.34 15.34 0.00 4.83
23 24 2.098607 CAGATGAGGAAAGCGTACGGTA 59.901 50.000 21.64 3.87 0.00 4.02
24 25 2.098770 AGATGAGGAAAGCGTACGGTAC 59.901 50.000 21.64 16.80 0.00 3.34
25 26 1.246649 TGAGGAAAGCGTACGGTACA 58.753 50.000 21.64 12.61 0.00 2.90
26 27 1.820519 TGAGGAAAGCGTACGGTACAT 59.179 47.619 21.64 15.14 0.00 2.29
27 28 2.159338 TGAGGAAAGCGTACGGTACATC 60.159 50.000 21.64 22.15 0.00 3.06
28 29 1.194495 GGAAAGCGTACGGTACATCG 58.806 55.000 21.64 5.78 0.00 3.84
29 30 1.468054 GGAAAGCGTACGGTACATCGT 60.468 52.381 21.64 0.06 45.88 3.73
30 31 2.253603 GAAAGCGTACGGTACATCGTT 58.746 47.619 21.64 10.01 43.59 3.85
31 32 3.425404 GAAAGCGTACGGTACATCGTTA 58.575 45.455 21.64 0.00 43.59 3.18
32 33 2.458592 AGCGTACGGTACATCGTTAC 57.541 50.000 19.91 0.00 43.59 2.50
33 34 1.737236 AGCGTACGGTACATCGTTACA 59.263 47.619 19.91 0.00 43.59 2.41
43 44 5.107414 CGGTACATCGTTACATTGTTGTCAA 60.107 40.000 0.00 0.00 37.28 3.18
46 47 6.371809 ACATCGTTACATTGTTGTCAAAGT 57.628 33.333 0.00 0.00 38.67 2.66
50 51 4.086327 CGTTACATTGTTGTCAAAGTTGCG 60.086 41.667 0.00 0.00 36.91 4.85
58 59 4.095036 TGTTGTCAAAGTTGCGACATGTTA 59.905 37.500 6.90 0.00 41.55 2.41
59 60 4.884458 TGTCAAAGTTGCGACATGTTAA 57.116 36.364 6.90 0.00 37.23 2.01
66 67 2.735643 TGCGACATGTTAATGCATCG 57.264 45.000 0.00 0.00 37.29 3.84
75 80 1.535462 GTTAATGCATCGCCGCCTATT 59.465 47.619 0.00 0.00 0.00 1.73
86 91 4.382291 TCGCCGCCTATTTTTGTACATAT 58.618 39.130 0.00 0.00 0.00 1.78
109 114 0.537188 TTGGAGATGTTCTCGGGCTC 59.463 55.000 0.00 0.00 44.28 4.70
114 119 2.035321 GAGATGTTCTCGGGCTCTTAGG 59.965 54.545 0.00 0.00 33.35 2.69
115 120 0.466124 ATGTTCTCGGGCTCTTAGGC 59.534 55.000 0.00 0.00 40.51 3.93
129 134 4.262617 CTCTTAGGCCTGGGAACTTTTAC 58.737 47.826 17.99 0.00 0.00 2.01
135 140 3.552875 GCCTGGGAACTTTTACCTATCC 58.447 50.000 0.00 0.00 0.00 2.59
137 142 3.433173 CCTGGGAACTTTTACCTATCCGG 60.433 52.174 0.00 0.00 39.35 5.14
138 143 2.092807 TGGGAACTTTTACCTATCCGGC 60.093 50.000 0.00 0.00 35.61 6.13
159 173 3.432186 GCTTGTGGCATGTATAGTCAGGA 60.432 47.826 0.00 0.00 41.35 3.86
209 223 4.228895 GGGGAGAGGGGAAAGTGTTTATTA 59.771 45.833 0.00 0.00 0.00 0.98
214 228 5.255443 AGAGGGGAAAGTGTTTATTACCCAT 59.745 40.000 8.46 0.00 39.38 4.00
229 243 1.003233 ACCCATGAAGGAAGACCGTTC 59.997 52.381 0.00 0.00 41.22 3.95
230 244 1.279271 CCCATGAAGGAAGACCGTTCT 59.721 52.381 0.00 0.00 41.22 3.01
250 264 7.911205 CCGTTCTTGTGTGTAATTCTTTGTTTA 59.089 33.333 0.00 0.00 0.00 2.01
251 265 8.943925 CGTTCTTGTGTGTAATTCTTTGTTTAG 58.056 33.333 0.00 0.00 0.00 1.85
252 266 9.997482 GTTCTTGTGTGTAATTCTTTGTTTAGA 57.003 29.630 0.00 0.00 0.00 2.10
254 268 9.607988 TCTTGTGTGTAATTCTTTGTTTAGAGA 57.392 29.630 0.00 0.00 0.00 3.10
257 271 9.554395 TGTGTGTAATTCTTTGTTTAGAGATGA 57.446 29.630 0.00 0.00 0.00 2.92
301 315 7.962964 TCGAGATGATTTTGTTTGTAAGTCT 57.037 32.000 0.00 0.00 0.00 3.24
338 354 5.010719 GTCATGAGGACGGATTTGGACTATA 59.989 44.000 0.00 0.00 36.65 1.31
342 358 7.792364 TGAGGACGGATTTGGACTATATATT 57.208 36.000 0.00 0.00 0.00 1.28
343 359 8.202461 TGAGGACGGATTTGGACTATATATTT 57.798 34.615 0.00 0.00 0.00 1.40
344 360 8.094548 TGAGGACGGATTTGGACTATATATTTG 58.905 37.037 0.00 0.00 0.00 2.32
345 361 7.974504 AGGACGGATTTGGACTATATATTTGT 58.025 34.615 0.00 0.00 0.00 2.83
373 389 2.088664 CGCTTTTCGTCTCGTTGTCTAC 59.911 50.000 0.00 0.00 0.00 2.59
374 390 3.306818 GCTTTTCGTCTCGTTGTCTACT 58.693 45.455 0.00 0.00 0.00 2.57
375 391 3.734735 GCTTTTCGTCTCGTTGTCTACTT 59.265 43.478 0.00 0.00 0.00 2.24
376 392 4.208666 GCTTTTCGTCTCGTTGTCTACTTT 59.791 41.667 0.00 0.00 0.00 2.66
377 393 5.630896 TTTTCGTCTCGTTGTCTACTTTG 57.369 39.130 0.00 0.00 0.00 2.77
378 394 3.976793 TCGTCTCGTTGTCTACTTTGT 57.023 42.857 0.00 0.00 0.00 2.83
379 395 5.422666 TTCGTCTCGTTGTCTACTTTGTA 57.577 39.130 0.00 0.00 0.00 2.41
380 396 5.027206 TCGTCTCGTTGTCTACTTTGTAG 57.973 43.478 0.00 0.00 0.00 2.74
381 397 4.512944 TCGTCTCGTTGTCTACTTTGTAGT 59.487 41.667 4.89 0.00 38.44 2.73
382 398 5.008019 TCGTCTCGTTGTCTACTTTGTAGTT 59.992 40.000 4.89 0.00 35.78 2.24
383 399 5.339085 CGTCTCGTTGTCTACTTTGTAGTTC 59.661 44.000 4.89 1.81 35.78 3.01
384 400 5.339085 GTCTCGTTGTCTACTTTGTAGTTCG 59.661 44.000 4.89 6.16 35.78 3.95
385 401 5.008019 TCTCGTTGTCTACTTTGTAGTTCGT 59.992 40.000 4.89 0.00 35.78 3.85
386 402 4.971830 TCGTTGTCTACTTTGTAGTTCGTG 59.028 41.667 4.89 0.00 35.78 4.35
387 403 4.736793 CGTTGTCTACTTTGTAGTTCGTGT 59.263 41.667 4.89 0.00 35.78 4.49
392 408 6.639686 TGTCTACTTTGTAGTTCGTGTTCATC 59.360 38.462 4.89 0.00 35.78 2.92
393 409 6.639686 GTCTACTTTGTAGTTCGTGTTCATCA 59.360 38.462 4.89 0.00 35.78 3.07
396 412 7.956420 ACTTTGTAGTTCGTGTTCATCAATA 57.044 32.000 0.00 0.00 0.00 1.90
404 420 8.728088 AGTTCGTGTTCATCAATAATGTTTTC 57.272 30.769 0.00 0.00 36.68 2.29
407 423 8.093659 TCGTGTTCATCAATAATGTTTTCTCA 57.906 30.769 0.00 0.00 36.68 3.27
408 424 8.563732 TCGTGTTCATCAATAATGTTTTCTCAA 58.436 29.630 0.00 0.00 36.68 3.02
409 425 9.345517 CGTGTTCATCAATAATGTTTTCTCAAT 57.654 29.630 0.00 0.00 36.68 2.57
430 447 9.992910 CTCAATCGAAAAATGATAATCAAGTCA 57.007 29.630 0.00 0.00 0.00 3.41
442 459 8.828688 TGATAATCAAGTCATCAATCAGCTAG 57.171 34.615 0.00 0.00 0.00 3.42
450 467 8.671921 CAAGTCATCAATCAGCTAGTAACATTT 58.328 33.333 0.00 0.00 0.00 2.32
454 471 5.868257 TCAATCAGCTAGTAACATTTTGCG 58.132 37.500 0.00 0.00 0.00 4.85
458 475 6.307031 TCAGCTAGTAACATTTTGCGAAAA 57.693 33.333 2.54 0.00 34.41 2.29
510 527 4.187694 GGACTTGATTGGCTACTTCAGAG 58.812 47.826 0.00 0.00 0.00 3.35
514 531 4.478206 TGATTGGCTACTTCAGAGAAGG 57.522 45.455 11.08 0.00 0.00 3.46
516 533 4.532126 TGATTGGCTACTTCAGAGAAGGAA 59.468 41.667 11.08 0.00 0.00 3.36
641 662 0.252558 CTACCCACTACCCACCACCT 60.253 60.000 0.00 0.00 0.00 4.00
642 663 1.007479 CTACCCACTACCCACCACCTA 59.993 57.143 0.00 0.00 0.00 3.08
643 664 0.546027 ACCCACTACCCACCACCTAC 60.546 60.000 0.00 0.00 0.00 3.18
644 665 1.269703 CCCACTACCCACCACCTACC 61.270 65.000 0.00 0.00 0.00 3.18
645 666 0.252558 CCACTACCCACCACCTACCT 60.253 60.000 0.00 0.00 0.00 3.08
646 667 1.007479 CCACTACCCACCACCTACCTA 59.993 57.143 0.00 0.00 0.00 3.08
647 668 2.105766 CACTACCCACCACCTACCTAC 58.894 57.143 0.00 0.00 0.00 3.18
663 684 1.133231 CCTACCCTACCTACCCCAGTC 60.133 61.905 0.00 0.00 0.00 3.51
664 685 1.858246 CTACCCTACCTACCCCAGTCT 59.142 57.143 0.00 0.00 0.00 3.24
674 695 2.066999 CCCCAGTCTCCAGCCCTAC 61.067 68.421 0.00 0.00 0.00 3.18
676 697 1.333636 CCCAGTCTCCAGCCCTACAG 61.334 65.000 0.00 0.00 0.00 2.74
677 698 0.324738 CCAGTCTCCAGCCCTACAGA 60.325 60.000 0.00 0.00 0.00 3.41
678 699 0.820871 CAGTCTCCAGCCCTACAGAC 59.179 60.000 0.00 0.00 36.32 3.51
679 700 0.324830 AGTCTCCAGCCCTACAGACC 60.325 60.000 0.00 0.00 36.68 3.85
698 719 0.448593 CGACGACTTCCTGTCTCCTC 59.551 60.000 0.00 0.00 43.25 3.71
699 720 0.812549 GACGACTTCCTGTCTCCTCC 59.187 60.000 0.00 0.00 43.25 4.30
700 721 0.406361 ACGACTTCCTGTCTCCTCCT 59.594 55.000 0.00 0.00 43.25 3.69
701 722 1.099689 CGACTTCCTGTCTCCTCCTC 58.900 60.000 0.00 0.00 43.25 3.71
774 797 1.454663 GGCCTCTGAATCCCCTTGC 60.455 63.158 0.00 0.00 0.00 4.01
781 804 0.253347 TGAATCCCCTTGCTCCTCCT 60.253 55.000 0.00 0.00 0.00 3.69
782 805 0.922626 GAATCCCCTTGCTCCTCCTT 59.077 55.000 0.00 0.00 0.00 3.36
800 840 2.202987 CCGAGGAGGCAGCACATC 60.203 66.667 0.00 0.00 0.00 3.06
801 841 2.580815 CGAGGAGGCAGCACATCA 59.419 61.111 0.00 0.00 0.00 3.07
802 842 1.521010 CGAGGAGGCAGCACATCAG 60.521 63.158 0.00 0.00 0.00 2.90
805 845 1.453379 GGAGGCAGCACATCAGCAT 60.453 57.895 0.00 0.00 36.85 3.79
807 847 0.746923 GAGGCAGCACATCAGCATCA 60.747 55.000 0.00 0.00 37.82 3.07
821 861 1.227060 CATCAGCGGCGTGATCTGA 60.227 57.895 15.43 15.43 40.62 3.27
824 864 1.953138 CAGCGGCGTGATCTGATCC 60.953 63.158 14.71 5.76 0.00 3.36
836 876 1.681538 TCTGATCCGGTCTGCTAGAC 58.318 55.000 0.00 7.52 44.32 2.59
979 1024 3.391382 ACCACCGTCCAGCTAGCC 61.391 66.667 12.13 0.00 0.00 3.93
988 1036 2.806009 CCAGCTAGCCAGGCTCCTC 61.806 68.421 20.38 8.37 40.44 3.71
1102 1150 2.034053 CAGATCAGCTTCCTCGAGGTAC 59.966 54.545 30.17 19.90 36.34 3.34
1160 1208 2.325082 CGCACCACAGCCCTGTTAC 61.325 63.158 0.00 0.00 42.83 2.50
1164 1212 0.038166 ACCACAGCCCTGTTACATGG 59.962 55.000 2.20 2.20 42.83 3.66
1169 1217 2.052104 GCCCTGTTACATGGTGCCC 61.052 63.158 8.38 0.00 0.00 5.36
1170 1218 1.691219 CCCTGTTACATGGTGCCCT 59.309 57.895 0.00 0.00 0.00 5.19
1171 1219 0.680921 CCCTGTTACATGGTGCCCTG 60.681 60.000 0.00 0.00 0.00 4.45
1172 1220 1.315257 CCTGTTACATGGTGCCCTGC 61.315 60.000 0.00 0.00 0.00 4.85
1173 1221 0.322816 CTGTTACATGGTGCCCTGCT 60.323 55.000 0.00 0.00 0.00 4.24
1174 1222 0.608856 TGTTACATGGTGCCCTGCTG 60.609 55.000 0.00 0.00 0.00 4.41
1195 1243 5.525378 GCTGCTGCTGTTACTCTGTTATTAT 59.475 40.000 8.53 0.00 36.03 1.28
1196 1244 6.037610 GCTGCTGCTGTTACTCTGTTATTATT 59.962 38.462 8.53 0.00 36.03 1.40
1197 1245 7.224753 GCTGCTGCTGTTACTCTGTTATTATTA 59.775 37.037 8.53 0.00 36.03 0.98
1198 1246 8.420374 TGCTGCTGTTACTCTGTTATTATTAC 57.580 34.615 0.00 0.00 0.00 1.89
1199 1247 7.494625 TGCTGCTGTTACTCTGTTATTATTACC 59.505 37.037 0.00 0.00 0.00 2.85
1200 1248 7.041984 GCTGCTGTTACTCTGTTATTATTACCC 60.042 40.741 0.00 0.00 0.00 3.69
1202 1250 8.322828 TGCTGTTACTCTGTTATTATTACCCAA 58.677 33.333 0.00 0.00 0.00 4.12
1203 1251 8.827677 GCTGTTACTCTGTTATTATTACCCAAG 58.172 37.037 0.00 0.00 0.00 3.61
1228 1281 9.154847 AGAAAATTACTAATTTGCAATTGAGCC 57.845 29.630 10.34 0.00 40.05 4.70
1232 1285 7.695480 TTACTAATTTGCAATTGAGCCTACA 57.305 32.000 10.34 0.00 0.00 2.74
1233 1286 5.954335 ACTAATTTGCAATTGAGCCTACAC 58.046 37.500 10.34 0.00 0.00 2.90
1234 1287 4.870123 AATTTGCAATTGAGCCTACACA 57.130 36.364 10.34 0.00 0.00 3.72
1244 1297 6.594788 ATTGAGCCTACACAACAAATGATT 57.405 33.333 0.00 0.00 0.00 2.57
1321 1396 5.201713 TGTCACTTCTAAGTCAGTTCCAG 57.798 43.478 0.00 0.00 37.08 3.86
1326 1401 4.039366 ACTTCTAAGTCAGTTCCAGGTGTC 59.961 45.833 0.00 0.00 32.86 3.67
1348 1423 8.264347 GTGTCCCTTTCTACTACTACTACTACT 58.736 40.741 0.00 0.00 0.00 2.57
1349 1424 9.494055 TGTCCCTTTCTACTACTACTACTACTA 57.506 37.037 0.00 0.00 0.00 1.82
1350 1425 9.758651 GTCCCTTTCTACTACTACTACTACTAC 57.241 40.741 0.00 0.00 0.00 2.73
1351 1426 9.722317 TCCCTTTCTACTACTACTACTACTACT 57.278 37.037 0.00 0.00 0.00 2.57
1352 1427 9.762933 CCCTTTCTACTACTACTACTACTACTG 57.237 40.741 0.00 0.00 0.00 2.74
1403 1695 1.035139 ACAGCAGCCTGAAAAGTTGG 58.965 50.000 0.00 0.00 41.77 3.77
1434 1744 4.532834 CTCTCCTCCTTGTACTCTAGCTT 58.467 47.826 0.00 0.00 0.00 3.74
1494 1806 4.516698 TCTGGAATTCAACAAGCTGTTCTC 59.483 41.667 7.93 0.00 38.77 2.87
1642 1955 4.159693 ACTTGGGGAGTGAAAACAAGAAAC 59.840 41.667 9.41 0.00 40.60 2.78
1699 2012 2.863704 GCAAGTGAGCCCATGTTTGAAC 60.864 50.000 0.00 0.00 0.00 3.18
1713 2026 5.459110 TGTTTGAACAAAGTCGTACAGAC 57.541 39.130 9.05 9.05 42.14 3.51
1714 2027 4.930405 TGTTTGAACAAAGTCGTACAGACA 59.070 37.500 16.44 0.00 43.28 3.41
1715 2028 5.062934 TGTTTGAACAAAGTCGTACAGACAG 59.937 40.000 16.44 10.13 43.28 3.51
1770 2083 9.127277 AGCAACACAGATTTTAGTTAAAACCTA 57.873 29.630 0.00 0.00 37.92 3.08
1771 2084 9.177304 GCAACACAGATTTTAGTTAAAACCTAC 57.823 33.333 0.00 0.00 37.92 3.18
1788 2101 6.969993 AACCTACAAATGGAAGTTTAGCAA 57.030 33.333 0.00 0.00 0.00 3.91
1789 2102 6.969993 ACCTACAAATGGAAGTTTAGCAAA 57.030 33.333 0.00 0.00 0.00 3.68
1791 2104 7.602753 ACCTACAAATGGAAGTTTAGCAAATC 58.397 34.615 0.00 0.00 0.00 2.17
1792 2105 7.035612 CCTACAAATGGAAGTTTAGCAAATCC 58.964 38.462 0.00 0.00 0.00 3.01
1794 2107 4.718940 AATGGAAGTTTAGCAAATCCGG 57.281 40.909 0.00 0.00 32.72 5.14
1795 2108 3.149005 TGGAAGTTTAGCAAATCCGGT 57.851 42.857 0.00 0.00 32.72 5.28
1847 2355 8.028354 CAGTTGAACATTATGCAAATCTGGTAA 58.972 33.333 0.00 0.00 0.00 2.85
1849 2357 6.550843 TGAACATTATGCAAATCTGGTAACG 58.449 36.000 0.00 0.00 42.51 3.18
1955 2463 6.235664 ACCTAAATTATATAGGGTTGCGGTG 58.764 40.000 6.63 0.00 43.55 4.94
1956 2464 6.043474 ACCTAAATTATATAGGGTTGCGGTGA 59.957 38.462 6.63 0.00 43.55 4.02
1957 2465 6.370718 CCTAAATTATATAGGGTTGCGGTGAC 59.629 42.308 0.00 0.00 36.97 3.67
1980 2488 5.701290 ACTGTACAGGCAGTTCTTGTATTTC 59.299 40.000 26.12 0.00 46.45 2.17
1981 2489 5.865085 TGTACAGGCAGTTCTTGTATTTCT 58.135 37.500 0.00 0.00 0.00 2.52
1982 2490 5.700832 TGTACAGGCAGTTCTTGTATTTCTG 59.299 40.000 0.00 0.00 0.00 3.02
2004 2512 1.620819 CTCCAGTCTTAGTGCCACTGT 59.379 52.381 7.83 0.00 36.57 3.55
2062 2570 1.586541 TGCAGACGTAGCAGTCAGG 59.413 57.895 10.75 3.16 43.24 3.86
2078 2586 1.337703 TCAGGTCATGTGTGCAAAAGC 59.662 47.619 0.00 0.00 0.00 3.51
2120 2628 8.797350 TTCTTCATATGTCAATCAGTTCACAT 57.203 30.769 1.90 0.00 33.95 3.21
2122 2630 9.538508 TCTTCATATGTCAATCAGTTCACATAG 57.461 33.333 1.90 0.00 35.67 2.23
2170 2678 5.819379 TCTTCTTGTTCATGACATATGGAGC 59.181 40.000 7.80 0.00 38.26 4.70
2181 2689 3.332919 ACATATGGAGCTGATTGATCGC 58.667 45.455 7.80 1.41 30.59 4.58
2182 2690 3.007723 ACATATGGAGCTGATTGATCGCT 59.992 43.478 7.80 9.09 38.61 4.93
2351 2859 1.280133 TGCAGTTCATCTGAGAAGGGG 59.720 52.381 0.00 0.00 46.27 4.79
2374 2882 1.066914 GCCGATCAATCTCATCGCTC 58.933 55.000 0.00 0.00 41.55 5.03
2414 2922 2.643551 TCATTTTCTTCCCGCAGATCC 58.356 47.619 0.00 0.00 0.00 3.36
2425 2933 5.854010 TCCCGCAGATCCTAATATATGTC 57.146 43.478 0.00 0.00 0.00 3.06
2428 2936 5.274718 CCGCAGATCCTAATATATGTCGAC 58.725 45.833 9.11 9.11 0.00 4.20
2437 2945 6.370994 TCCTAATATATGTCGACGGTTCTCTC 59.629 42.308 11.62 0.00 0.00 3.20
2551 3067 4.497473 TTTTCCCAGTTTTACATCTGCG 57.503 40.909 0.00 0.00 0.00 5.18
2563 3079 1.001974 ACATCTGCGCTCTACAAACCA 59.998 47.619 9.73 0.00 0.00 3.67
2585 3101 6.154445 CCATAACAATTATGAATCAGCCAGC 58.846 40.000 9.63 0.00 44.52 4.85
2610 3126 2.852143 GCATGCATCGATTTGAACTCGG 60.852 50.000 14.21 0.00 36.78 4.63
2618 3134 6.183360 GCATCGATTTGAACTCGGTTTTAGTA 60.183 38.462 5.12 0.00 36.78 1.82
2619 3135 6.939551 TCGATTTGAACTCGGTTTTAGTAG 57.060 37.500 5.12 0.00 36.78 2.57
2620 3136 6.449698 TCGATTTGAACTCGGTTTTAGTAGT 58.550 36.000 5.12 0.00 36.78 2.73
2622 3138 6.585322 CGATTTGAACTCGGTTTTAGTAGTCT 59.415 38.462 0.00 0.00 32.58 3.24
2647 3163 3.516586 TGTAATGAACTGACTGAGGGGA 58.483 45.455 0.00 0.00 0.00 4.81
2663 3179 4.021544 TGAGGGGAATGTTAATGTTTGTGC 60.022 41.667 0.00 0.00 0.00 4.57
2961 3477 7.694367 GCCGTATTGAGATTTTTCTTCTTCTTC 59.306 37.037 0.00 0.00 0.00 2.87
2962 3478 8.940952 CCGTATTGAGATTTTTCTTCTTCTTCT 58.059 33.333 0.00 0.00 0.00 2.85
2984 3500 0.098728 GTTCTTGCTGTGTGCGTTGT 59.901 50.000 0.00 0.00 46.63 3.32
2985 3501 0.098552 TTCTTGCTGTGTGCGTTGTG 59.901 50.000 0.00 0.00 46.63 3.33
2986 3502 1.940758 CTTGCTGTGTGCGTTGTGC 60.941 57.895 0.00 0.00 46.63 4.57
3032 3554 1.601914 GGTGTTTTTGACGGGCATGAC 60.602 52.381 0.00 0.00 0.00 3.06
3090 3612 0.671251 TTGCCTGGTTTTACTTGCCG 59.329 50.000 0.00 0.00 0.00 5.69
3097 3619 1.877443 GGTTTTACTTGCCGCAGAGAA 59.123 47.619 8.85 0.00 0.00 2.87
3103 3625 1.150567 CTTGCCGCAGAGAAGGATCG 61.151 60.000 0.00 0.00 0.00 3.69
3108 3630 1.150567 CGCAGAGAAGGATCGCTTGG 61.151 60.000 1.70 0.00 32.96 3.61
3111 3633 1.524849 GAGAAGGATCGCTTGGGCC 60.525 63.158 0.00 0.00 34.44 5.80
3121 3643 2.041115 GCTTGGGCCTTCGTCCTTC 61.041 63.158 4.53 0.00 0.00 3.46
3176 3698 3.535561 AGATAACTGCAGAATGAACGGG 58.464 45.455 23.35 0.00 39.69 5.28
3217 3739 7.044181 GTGATGATGGTCAGGGTGTATATATG 58.956 42.308 0.00 0.00 0.00 1.78
3237 3805 1.745653 GCCCAGTTAGAGCATGGTTTC 59.254 52.381 0.00 0.00 31.85 2.78
3238 3806 2.369394 CCCAGTTAGAGCATGGTTTCC 58.631 52.381 0.00 0.00 31.85 3.13
3249 3817 2.749776 CATGGTTTCCGGTTTTTGTCC 58.250 47.619 0.00 0.00 0.00 4.02
3250 3818 1.112950 TGGTTTCCGGTTTTTGTCCC 58.887 50.000 0.00 0.00 0.00 4.46
3289 3860 0.316841 TCCTGCATTTTCGCCAAACC 59.683 50.000 0.00 0.00 0.00 3.27
3296 3867 4.167268 GCATTTTCGCCAAACCGTAAATA 58.833 39.130 0.00 0.00 36.51 1.40
3301 3872 6.692232 TTTCGCCAAACCGTAAATATTTTG 57.308 33.333 5.91 0.00 0.00 2.44
3304 3875 4.500127 GCCAAACCGTAAATATTTTGCCT 58.500 39.130 5.91 0.00 0.00 4.75
3305 3876 4.932799 GCCAAACCGTAAATATTTTGCCTT 59.067 37.500 5.91 0.00 0.00 4.35
3306 3877 5.410132 GCCAAACCGTAAATATTTTGCCTTT 59.590 36.000 5.91 0.00 0.00 3.11
3307 3878 6.590677 GCCAAACCGTAAATATTTTGCCTTTA 59.409 34.615 5.91 0.00 0.00 1.85
3308 3879 7.201487 GCCAAACCGTAAATATTTTGCCTTTAG 60.201 37.037 5.91 0.00 0.00 1.85
3311 3882 5.419471 ACCGTAAATATTTTGCCTTTAGCCA 59.581 36.000 5.91 0.00 42.71 4.75
3312 3883 6.097696 ACCGTAAATATTTTGCCTTTAGCCAT 59.902 34.615 5.91 0.00 42.71 4.40
3313 3884 7.285858 ACCGTAAATATTTTGCCTTTAGCCATA 59.714 33.333 5.91 0.00 42.71 2.74
3315 3886 9.522804 CGTAAATATTTTGCCTTTAGCCATAAA 57.477 29.630 5.91 0.00 42.71 1.40
3321 3892 6.603940 TTTGCCTTTAGCCATAAAATGACT 57.396 33.333 0.00 0.00 42.71 3.41
3322 3893 5.835113 TGCCTTTAGCCATAAAATGACTC 57.165 39.130 0.00 0.00 42.71 3.36
3323 3894 4.335315 TGCCTTTAGCCATAAAATGACTCG 59.665 41.667 0.00 0.00 42.71 4.18
3324 3895 4.261197 GCCTTTAGCCATAAAATGACTCGG 60.261 45.833 0.00 0.00 34.35 4.63
3325 3896 4.261197 CCTTTAGCCATAAAATGACTCGGC 60.261 45.833 0.00 0.00 39.90 5.54
3329 3900 1.013596 CATAAAATGACTCGGCGCCA 58.986 50.000 28.98 12.94 0.00 5.69
3330 3901 1.014352 ATAAAATGACTCGGCGCCAC 58.986 50.000 28.98 14.70 0.00 5.01
3331 3902 1.355796 TAAAATGACTCGGCGCCACG 61.356 55.000 28.98 18.87 0.00 4.94
3365 4359 4.168291 GCTAGCCAGGAGCCGCTT 62.168 66.667 2.29 0.00 45.47 4.68
3367 4361 3.746949 CTAGCCAGGAGCCGCTTGG 62.747 68.421 6.73 6.73 46.08 3.61
3436 4510 4.152647 GCTTTTAGGGGGCTTTATGCTAT 58.847 43.478 0.00 0.00 42.39 2.97
3465 4540 7.991084 AGGACCCTGTTGTAAATTTAACTAC 57.009 36.000 0.00 3.18 0.00 2.73
3467 4542 8.883302 AGGACCCTGTTGTAAATTTAACTACTA 58.117 33.333 0.00 0.00 0.00 1.82
3486 4561 6.666546 ACTACTAACAAGTGGGCTTCTACATA 59.333 38.462 0.00 0.00 31.49 2.29
3492 4567 2.706190 AGTGGGCTTCTACATATGACCC 59.294 50.000 10.38 10.10 36.36 4.46
3500 4575 4.563337 TCTACATATGACCCGAAACGAG 57.437 45.455 10.38 0.00 0.00 4.18
3506 4581 6.110707 ACATATGACCCGAAACGAGTTTTAT 58.889 36.000 10.38 0.00 32.11 1.40
3508 4583 3.992643 TGACCCGAAACGAGTTTTATGA 58.007 40.909 2.53 0.00 32.11 2.15
3512 4587 4.868734 ACCCGAAACGAGTTTTATGAGATC 59.131 41.667 2.53 0.00 32.11 2.75
3518 4593 7.148804 CGAAACGAGTTTTATGAGATCTGTTCA 60.149 37.037 0.00 0.00 32.11 3.18
3522 4597 4.872691 AGTTTTATGAGATCTGTTCAGGCG 59.127 41.667 0.00 0.00 0.00 5.52
3534 4609 1.978455 TTCAGGCGGAACACACACCT 61.978 55.000 0.00 0.00 0.00 4.00
3537 4612 0.034896 AGGCGGAACACACACCTTAG 59.965 55.000 0.00 0.00 0.00 2.18
3570 4645 9.674824 AGTATATCCGAAACGATTTTACAGTAG 57.325 33.333 0.00 0.00 0.00 2.57
3590 4665 2.168728 AGGAGATTTTACGAGACCTGCC 59.831 50.000 0.00 0.00 0.00 4.85
3618 4693 1.405821 CTCTTAGCGGATCTCCAACGT 59.594 52.381 0.00 0.00 35.14 3.99
3619 4694 1.404391 TCTTAGCGGATCTCCAACGTC 59.596 52.381 0.00 0.00 35.14 4.34
3621 4696 0.745486 TAGCGGATCTCCAACGTCGA 60.745 55.000 0.00 0.00 35.14 4.20
3634 4709 0.248990 ACGTCGAGCCACAAAACGTA 60.249 50.000 0.00 0.00 43.97 3.57
3640 4715 1.529865 GAGCCACAAAACGTACAGACC 59.470 52.381 0.00 0.00 0.00 3.85
3651 4726 0.108992 GTACAGACCGACGCATCCAA 60.109 55.000 0.00 0.00 0.00 3.53
3652 4727 0.821517 TACAGACCGACGCATCCAAT 59.178 50.000 0.00 0.00 0.00 3.16
3653 4728 0.740868 ACAGACCGACGCATCCAATG 60.741 55.000 0.00 0.00 0.00 2.82
3654 4729 0.740868 CAGACCGACGCATCCAATGT 60.741 55.000 0.00 0.00 0.00 2.71
3655 4730 0.740868 AGACCGACGCATCCAATGTG 60.741 55.000 0.00 0.00 45.88 3.21
3656 4731 0.739462 GACCGACGCATCCAATGTGA 60.739 55.000 7.44 0.00 43.24 3.58
3657 4732 0.107703 ACCGACGCATCCAATGTGAT 60.108 50.000 7.44 0.00 43.24 3.06
3658 4733 0.305617 CCGACGCATCCAATGTGATG 59.694 55.000 7.44 7.16 43.24 3.07
3659 4734 1.009078 CGACGCATCCAATGTGATGT 58.991 50.000 7.44 0.00 43.28 3.06
3661 4736 3.930400 CGCATCCAATGTGATGTGG 57.070 52.632 13.68 0.00 45.26 4.17
3662 4737 0.248743 CGCATCCAATGTGATGTGGC 60.249 55.000 13.68 1.96 45.26 5.01
3663 4738 0.818938 GCATCCAATGTGATGTGGCA 59.181 50.000 11.42 0.00 43.28 4.92
3664 4739 1.411246 GCATCCAATGTGATGTGGCAT 59.589 47.619 11.42 0.00 43.28 4.40
3665 4740 2.624364 GCATCCAATGTGATGTGGCATA 59.376 45.455 11.42 0.00 43.28 3.14
3666 4741 3.551454 GCATCCAATGTGATGTGGCATAC 60.551 47.826 11.42 0.00 43.28 2.39
3667 4742 2.287769 TCCAATGTGATGTGGCATACG 58.712 47.619 0.00 0.00 34.68 3.06
3668 4743 2.016318 CCAATGTGATGTGGCATACGT 58.984 47.619 0.00 0.00 0.00 3.57
3669 4744 2.032054 CCAATGTGATGTGGCATACGTC 59.968 50.000 0.00 5.80 44.09 4.34
3670 4745 1.953559 ATGTGATGTGGCATACGTCC 58.046 50.000 0.00 0.00 43.34 4.79
3671 4746 0.107897 TGTGATGTGGCATACGTCCC 60.108 55.000 0.00 0.00 43.34 4.46
3672 4747 1.142965 TGATGTGGCATACGTCCCG 59.857 57.895 0.00 0.00 43.34 5.14
3673 4748 1.143183 GATGTGGCATACGTCCCGT 59.857 57.895 0.00 0.00 44.35 5.28
3674 4749 1.151777 GATGTGGCATACGTCCCGTG 61.152 60.000 0.00 0.00 41.39 4.94
3675 4750 1.895020 ATGTGGCATACGTCCCGTGT 61.895 55.000 0.00 0.00 41.39 4.49
3680 4755 2.451693 CATACGTCCCGTGTGTTGG 58.548 57.895 0.00 0.00 42.37 3.77
3681 4756 0.038067 CATACGTCCCGTGTGTTGGA 60.038 55.000 0.00 0.00 42.37 3.53
3682 4757 0.899720 ATACGTCCCGTGTGTTGGAT 59.100 50.000 0.00 0.00 41.39 3.41
3683 4758 0.680618 TACGTCCCGTGTGTTGGATT 59.319 50.000 0.00 0.00 41.39 3.01
3684 4759 0.179040 ACGTCCCGTGTGTTGGATTT 60.179 50.000 0.00 0.00 39.18 2.17
3685 4760 1.070445 ACGTCCCGTGTGTTGGATTTA 59.930 47.619 0.00 0.00 39.18 1.40
3686 4761 1.461897 CGTCCCGTGTGTTGGATTTAC 59.538 52.381 0.00 0.00 32.20 2.01
3687 4762 1.461897 GTCCCGTGTGTTGGATTTACG 59.538 52.381 0.00 0.00 32.20 3.18
3688 4763 1.070445 TCCCGTGTGTTGGATTTACGT 59.930 47.619 0.00 0.00 33.28 3.57
3689 4764 1.874872 CCCGTGTGTTGGATTTACGTT 59.125 47.619 0.00 0.00 33.28 3.99
3690 4765 2.350007 CCCGTGTGTTGGATTTACGTTG 60.350 50.000 0.00 0.00 33.28 4.10
3691 4766 2.544686 CCGTGTGTTGGATTTACGTTGA 59.455 45.455 0.00 0.00 33.28 3.18
3692 4767 3.363575 CCGTGTGTTGGATTTACGTTGAG 60.364 47.826 0.00 0.00 33.28 3.02
3693 4768 3.363575 CGTGTGTTGGATTTACGTTGAGG 60.364 47.826 0.00 0.00 0.00 3.86
3694 4769 3.810941 GTGTGTTGGATTTACGTTGAGGA 59.189 43.478 0.00 0.00 0.00 3.71
3695 4770 4.062293 TGTGTTGGATTTACGTTGAGGAG 58.938 43.478 0.00 0.00 0.00 3.69
3696 4771 3.435671 GTGTTGGATTTACGTTGAGGAGG 59.564 47.826 0.00 0.00 0.00 4.30
3697 4772 3.071892 TGTTGGATTTACGTTGAGGAGGT 59.928 43.478 0.00 0.00 0.00 3.85
3698 4773 4.070009 GTTGGATTTACGTTGAGGAGGTT 58.930 43.478 0.00 0.00 0.00 3.50
3699 4774 4.360951 TGGATTTACGTTGAGGAGGTTT 57.639 40.909 0.00 0.00 0.00 3.27
3700 4775 4.069304 TGGATTTACGTTGAGGAGGTTTG 58.931 43.478 0.00 0.00 0.00 2.93
3701 4776 3.119955 GGATTTACGTTGAGGAGGTTTGC 60.120 47.826 0.00 0.00 0.00 3.68
3702 4777 1.504359 TTACGTTGAGGAGGTTTGCG 58.496 50.000 0.00 0.00 0.00 4.85
3703 4778 0.320073 TACGTTGAGGAGGTTTGCGG 60.320 55.000 0.00 0.00 0.00 5.69
3704 4779 2.325082 CGTTGAGGAGGTTTGCGGG 61.325 63.158 0.00 0.00 0.00 6.13
3705 4780 1.072505 GTTGAGGAGGTTTGCGGGA 59.927 57.895 0.00 0.00 0.00 5.14
3706 4781 0.955919 GTTGAGGAGGTTTGCGGGAG 60.956 60.000 0.00 0.00 0.00 4.30
3707 4782 1.415672 TTGAGGAGGTTTGCGGGAGT 61.416 55.000 0.00 0.00 0.00 3.85
3708 4783 1.079057 GAGGAGGTTTGCGGGAGTC 60.079 63.158 0.00 0.00 0.00 3.36
3709 4784 1.827399 GAGGAGGTTTGCGGGAGTCA 61.827 60.000 0.00 0.00 0.00 3.41
3710 4785 1.072505 GGAGGTTTGCGGGAGTCAA 59.927 57.895 0.00 0.00 0.00 3.18
3711 4786 0.955919 GGAGGTTTGCGGGAGTCAAG 60.956 60.000 0.00 0.00 0.00 3.02
3712 4787 0.034896 GAGGTTTGCGGGAGTCAAGA 59.965 55.000 0.00 0.00 0.00 3.02
3713 4788 0.250338 AGGTTTGCGGGAGTCAAGAC 60.250 55.000 0.00 0.00 0.00 3.01
3714 4789 1.235281 GGTTTGCGGGAGTCAAGACC 61.235 60.000 0.00 0.00 0.00 3.85
3715 4790 0.250338 GTTTGCGGGAGTCAAGACCT 60.250 55.000 0.00 0.00 0.00 3.85
3716 4791 0.034896 TTTGCGGGAGTCAAGACCTC 59.965 55.000 0.00 0.00 0.00 3.85
3717 4792 0.832135 TTGCGGGAGTCAAGACCTCT 60.832 55.000 0.00 0.00 0.00 3.69
3718 4793 0.039180 TGCGGGAGTCAAGACCTCTA 59.961 55.000 0.00 0.00 0.00 2.43
3719 4794 0.456628 GCGGGAGTCAAGACCTCTAC 59.543 60.000 0.00 0.00 0.00 2.59
3720 4795 1.956159 GCGGGAGTCAAGACCTCTACT 60.956 57.143 0.00 0.00 0.00 2.57
3721 4796 1.746220 CGGGAGTCAAGACCTCTACTG 59.254 57.143 0.00 0.00 0.00 2.74
3722 4797 1.478916 GGGAGTCAAGACCTCTACTGC 59.521 57.143 0.00 0.00 0.00 4.40
3723 4798 1.133407 GGAGTCAAGACCTCTACTGCG 59.867 57.143 0.00 0.00 0.00 5.18
3724 4799 1.813786 GAGTCAAGACCTCTACTGCGT 59.186 52.381 0.00 0.00 0.00 5.24
3725 4800 2.229302 GAGTCAAGACCTCTACTGCGTT 59.771 50.000 0.00 0.00 0.00 4.84
3726 4801 2.029828 AGTCAAGACCTCTACTGCGTTG 60.030 50.000 0.00 0.00 0.00 4.10
3727 4802 1.272490 TCAAGACCTCTACTGCGTTGG 59.728 52.381 0.00 0.00 0.00 3.77
3728 4803 0.608640 AAGACCTCTACTGCGTTGGG 59.391 55.000 0.00 0.00 0.00 4.12
3729 4804 1.218316 GACCTCTACTGCGTTGGGG 59.782 63.158 7.31 7.31 35.15 4.96
3730 4805 1.229082 ACCTCTACTGCGTTGGGGA 60.229 57.895 13.79 0.00 32.82 4.81
3731 4806 1.258445 ACCTCTACTGCGTTGGGGAG 61.258 60.000 13.79 1.38 40.47 4.30
3732 4807 1.517832 CTCTACTGCGTTGGGGAGG 59.482 63.158 0.00 0.00 38.63 4.30
3733 4808 1.229082 TCTACTGCGTTGGGGAGGT 60.229 57.895 0.00 0.00 38.63 3.85
3734 4809 0.834687 TCTACTGCGTTGGGGAGGTT 60.835 55.000 0.00 0.00 38.63 3.50
3735 4810 0.036306 CTACTGCGTTGGGGAGGTTT 59.964 55.000 0.00 0.00 38.63 3.27
3736 4811 0.250553 TACTGCGTTGGGGAGGTTTG 60.251 55.000 0.00 0.00 38.63 2.93
3737 4812 2.909965 TGCGTTGGGGAGGTTTGC 60.910 61.111 0.00 0.00 0.00 3.68
3738 4813 4.038080 GCGTTGGGGAGGTTTGCG 62.038 66.667 0.00 0.00 0.00 4.85
3739 4814 2.281208 CGTTGGGGAGGTTTGCGA 60.281 61.111 0.00 0.00 0.00 5.10
3740 4815 2.325082 CGTTGGGGAGGTTTGCGAG 61.325 63.158 0.00 0.00 0.00 5.03
3741 4816 2.282180 TTGGGGAGGTTTGCGAGC 60.282 61.111 0.00 0.00 0.00 5.03
3742 4817 3.126703 TTGGGGAGGTTTGCGAGCA 62.127 57.895 0.00 0.00 0.00 4.26
3743 4818 2.282180 GGGGAGGTTTGCGAGCAA 60.282 61.111 6.39 6.39 0.00 3.91
3744 4819 1.678970 GGGGAGGTTTGCGAGCAAT 60.679 57.895 11.53 0.00 35.70 3.56
3745 4820 0.393808 GGGGAGGTTTGCGAGCAATA 60.394 55.000 11.53 0.49 35.70 1.90
3746 4821 1.459450 GGGAGGTTTGCGAGCAATAA 58.541 50.000 11.53 0.00 35.70 1.40
3747 4822 1.816224 GGGAGGTTTGCGAGCAATAAA 59.184 47.619 11.53 0.00 35.70 1.40
3748 4823 2.230266 GGGAGGTTTGCGAGCAATAAAA 59.770 45.455 11.53 0.00 35.70 1.52
3749 4824 3.305744 GGGAGGTTTGCGAGCAATAAAAA 60.306 43.478 11.53 0.00 35.70 1.94
3768 4843 2.961526 AATGTACACCTAGCAGTCGG 57.038 50.000 0.00 0.00 0.00 4.79
3769 4844 2.139323 ATGTACACCTAGCAGTCGGA 57.861 50.000 0.00 0.00 0.00 4.55
3770 4845 2.139323 TGTACACCTAGCAGTCGGAT 57.861 50.000 0.00 0.00 0.00 4.18
3771 4846 2.453521 TGTACACCTAGCAGTCGGATT 58.546 47.619 0.00 0.00 0.00 3.01
3772 4847 3.623703 TGTACACCTAGCAGTCGGATTA 58.376 45.455 0.00 0.00 0.00 1.75
3773 4848 4.212716 TGTACACCTAGCAGTCGGATTAT 58.787 43.478 0.00 0.00 0.00 1.28
3774 4849 5.379187 TGTACACCTAGCAGTCGGATTATA 58.621 41.667 0.00 0.00 0.00 0.98
3775 4850 4.850347 ACACCTAGCAGTCGGATTATAC 57.150 45.455 0.00 0.00 0.00 1.47
3776 4851 3.252701 ACACCTAGCAGTCGGATTATACG 59.747 47.826 0.00 0.00 0.00 3.06
3777 4852 2.228343 ACCTAGCAGTCGGATTATACGC 59.772 50.000 0.00 0.00 0.00 4.42
3778 4853 2.415625 CCTAGCAGTCGGATTATACGCC 60.416 54.545 0.00 0.00 0.00 5.68
3796 4871 3.752796 CGATTAGACGGGCCTTTGA 57.247 52.632 0.84 0.00 0.00 2.69
3797 4872 2.240493 CGATTAGACGGGCCTTTGAT 57.760 50.000 0.84 0.00 0.00 2.57
3798 4873 2.561569 CGATTAGACGGGCCTTTGATT 58.438 47.619 0.84 0.00 0.00 2.57
3799 4874 2.544267 CGATTAGACGGGCCTTTGATTC 59.456 50.000 0.84 0.00 0.00 2.52
3800 4875 2.018542 TTAGACGGGCCTTTGATTCG 57.981 50.000 0.84 0.00 0.00 3.34
3801 4876 0.177141 TAGACGGGCCTTTGATTCGG 59.823 55.000 0.84 0.00 0.00 4.30
3802 4877 1.078708 GACGGGCCTTTGATTCGGA 60.079 57.895 0.84 0.00 0.00 4.55
3803 4878 1.366854 GACGGGCCTTTGATTCGGAC 61.367 60.000 0.84 0.00 0.00 4.79
3804 4879 2.461110 CGGGCCTTTGATTCGGACG 61.461 63.158 0.84 0.00 0.00 4.79
3805 4880 1.078708 GGGCCTTTGATTCGGACGA 60.079 57.895 0.84 0.00 0.00 4.20
3806 4881 0.463833 GGGCCTTTGATTCGGACGAT 60.464 55.000 0.84 0.00 0.00 3.73
3807 4882 1.379527 GGCCTTTGATTCGGACGATT 58.620 50.000 0.00 0.00 0.00 3.34
3808 4883 1.064060 GGCCTTTGATTCGGACGATTG 59.936 52.381 0.00 0.00 0.00 2.67
3809 4884 1.064060 GCCTTTGATTCGGACGATTGG 59.936 52.381 0.00 0.00 0.00 3.16
3810 4885 2.356135 CCTTTGATTCGGACGATTGGT 58.644 47.619 0.00 0.00 0.00 3.67
3811 4886 2.351726 CCTTTGATTCGGACGATTGGTC 59.648 50.000 0.00 0.00 45.31 4.02
3831 4906 4.323477 CCGGTGGCGACCCAAAGA 62.323 66.667 12.80 0.00 44.33 2.52
3832 4907 2.281208 CGGTGGCGACCCAAAGAA 60.281 61.111 12.80 0.00 44.33 2.52
3833 4908 2.325082 CGGTGGCGACCCAAAGAAG 61.325 63.158 12.80 0.00 44.33 2.85
3834 4909 1.072505 GGTGGCGACCCAAAGAAGA 59.927 57.895 6.63 0.00 44.33 2.87
3835 4910 0.536460 GGTGGCGACCCAAAGAAGAA 60.536 55.000 6.63 0.00 44.33 2.52
3836 4911 0.875059 GTGGCGACCCAAAGAAGAAG 59.125 55.000 0.00 0.00 44.33 2.85
3837 4912 0.762418 TGGCGACCCAAAGAAGAAGA 59.238 50.000 0.00 0.00 38.46 2.87
3838 4913 1.142060 TGGCGACCCAAAGAAGAAGAA 59.858 47.619 0.00 0.00 38.46 2.52
3839 4914 1.807142 GGCGACCCAAAGAAGAAGAAG 59.193 52.381 0.00 0.00 0.00 2.85
3840 4915 2.550208 GGCGACCCAAAGAAGAAGAAGA 60.550 50.000 0.00 0.00 0.00 2.87
3841 4916 2.739379 GCGACCCAAAGAAGAAGAAGAG 59.261 50.000 0.00 0.00 0.00 2.85
3842 4917 3.330267 CGACCCAAAGAAGAAGAAGAGG 58.670 50.000 0.00 0.00 0.00 3.69
3843 4918 3.680490 GACCCAAAGAAGAAGAAGAGGG 58.320 50.000 0.00 0.00 40.88 4.30
3844 4919 3.327439 ACCCAAAGAAGAAGAAGAGGGA 58.673 45.455 0.00 0.00 38.43 4.20
3845 4920 3.722101 ACCCAAAGAAGAAGAAGAGGGAA 59.278 43.478 0.00 0.00 38.43 3.97
3846 4921 4.202514 ACCCAAAGAAGAAGAAGAGGGAAG 60.203 45.833 0.00 0.00 38.43 3.46
3847 4922 3.755905 CCAAAGAAGAAGAAGAGGGAAGC 59.244 47.826 0.00 0.00 0.00 3.86
3848 4923 4.392940 CAAAGAAGAAGAAGAGGGAAGCA 58.607 43.478 0.00 0.00 0.00 3.91
3849 4924 4.713792 AAGAAGAAGAAGAGGGAAGCAA 57.286 40.909 0.00 0.00 0.00 3.91
3850 4925 4.284829 AGAAGAAGAAGAGGGAAGCAAG 57.715 45.455 0.00 0.00 0.00 4.01
3851 4926 3.008923 AGAAGAAGAAGAGGGAAGCAAGG 59.991 47.826 0.00 0.00 0.00 3.61
3852 4927 2.343625 AGAAGAAGAGGGAAGCAAGGT 58.656 47.619 0.00 0.00 0.00 3.50
3853 4928 2.713708 AGAAGAAGAGGGAAGCAAGGTT 59.286 45.455 0.00 0.00 0.00 3.50
3854 4929 2.869101 AGAAGAGGGAAGCAAGGTTC 57.131 50.000 3.52 3.52 0.00 3.62
3855 4930 2.057922 AGAAGAGGGAAGCAAGGTTCA 58.942 47.619 13.27 0.00 0.00 3.18
3856 4931 2.443255 AGAAGAGGGAAGCAAGGTTCAA 59.557 45.455 13.27 0.00 0.00 2.69
3857 4932 3.075134 AGAAGAGGGAAGCAAGGTTCAAT 59.925 43.478 13.27 1.79 0.00 2.57
3858 4933 3.532641 AGAGGGAAGCAAGGTTCAATT 57.467 42.857 13.27 0.00 0.00 2.32
3859 4934 3.849527 AGAGGGAAGCAAGGTTCAATTT 58.150 40.909 13.27 0.00 0.00 1.82
3860 4935 3.575687 AGAGGGAAGCAAGGTTCAATTTG 59.424 43.478 13.27 0.00 0.00 2.32
3861 4936 3.573967 GAGGGAAGCAAGGTTCAATTTGA 59.426 43.478 13.27 0.00 0.00 2.69
3862 4937 3.575687 AGGGAAGCAAGGTTCAATTTGAG 59.424 43.478 13.27 0.00 0.00 3.02
3863 4938 3.306294 GGGAAGCAAGGTTCAATTTGAGG 60.306 47.826 13.27 0.00 0.00 3.86
3864 4939 3.306294 GGAAGCAAGGTTCAATTTGAGGG 60.306 47.826 13.27 0.00 0.00 4.30
3865 4940 3.243359 AGCAAGGTTCAATTTGAGGGA 57.757 42.857 0.00 0.00 0.00 4.20
3866 4941 3.160269 AGCAAGGTTCAATTTGAGGGAG 58.840 45.455 0.00 0.00 0.00 4.30
3867 4942 2.232208 GCAAGGTTCAATTTGAGGGAGG 59.768 50.000 0.00 0.00 0.00 4.30
3868 4943 3.766545 CAAGGTTCAATTTGAGGGAGGA 58.233 45.455 0.00 0.00 0.00 3.71
3869 4944 4.151883 CAAGGTTCAATTTGAGGGAGGAA 58.848 43.478 0.00 0.00 0.00 3.36
3870 4945 4.469469 AGGTTCAATTTGAGGGAGGAAA 57.531 40.909 0.00 0.00 0.00 3.13
3871 4946 4.814967 AGGTTCAATTTGAGGGAGGAAAA 58.185 39.130 0.00 0.00 0.00 2.29
3872 4947 5.215845 AGGTTCAATTTGAGGGAGGAAAAA 58.784 37.500 0.00 0.00 0.00 1.94
3873 4948 5.846164 AGGTTCAATTTGAGGGAGGAAAAAT 59.154 36.000 0.00 0.00 0.00 1.82
3874 4949 6.014242 AGGTTCAATTTGAGGGAGGAAAAATC 60.014 38.462 0.00 0.00 0.00 2.17
3875 4950 5.643379 TCAATTTGAGGGAGGAAAAATCG 57.357 39.130 0.00 0.00 0.00 3.34
3876 4951 5.076873 TCAATTTGAGGGAGGAAAAATCGT 58.923 37.500 0.00 0.00 0.00 3.73
3877 4952 5.538433 TCAATTTGAGGGAGGAAAAATCGTT 59.462 36.000 0.00 0.00 0.00 3.85
3878 4953 4.846779 TTTGAGGGAGGAAAAATCGTTG 57.153 40.909 0.00 0.00 0.00 4.10
3879 4954 3.502123 TGAGGGAGGAAAAATCGTTGT 57.498 42.857 0.00 0.00 0.00 3.32
3880 4955 3.146066 TGAGGGAGGAAAAATCGTTGTG 58.854 45.455 0.00 0.00 0.00 3.33
3881 4956 3.146847 GAGGGAGGAAAAATCGTTGTGT 58.853 45.455 0.00 0.00 0.00 3.72
3882 4957 2.884639 AGGGAGGAAAAATCGTTGTGTG 59.115 45.455 0.00 0.00 0.00 3.82
3883 4958 2.882137 GGGAGGAAAAATCGTTGTGTGA 59.118 45.455 0.00 0.00 0.00 3.58
3884 4959 3.506067 GGGAGGAAAAATCGTTGTGTGAT 59.494 43.478 0.00 0.00 0.00 3.06
3885 4960 4.475944 GGAGGAAAAATCGTTGTGTGATG 58.524 43.478 0.00 0.00 0.00 3.07
3886 4961 3.900941 AGGAAAAATCGTTGTGTGATGC 58.099 40.909 0.00 0.00 0.00 3.91
3887 4962 3.569701 AGGAAAAATCGTTGTGTGATGCT 59.430 39.130 0.00 0.00 0.00 3.79
3888 4963 4.037923 AGGAAAAATCGTTGTGTGATGCTT 59.962 37.500 0.00 0.00 0.00 3.91
3889 4964 4.148696 GGAAAAATCGTTGTGTGATGCTTG 59.851 41.667 0.00 0.00 0.00 4.01
3890 4965 2.995466 AATCGTTGTGTGATGCTTGG 57.005 45.000 0.00 0.00 0.00 3.61
3891 4966 0.523072 ATCGTTGTGTGATGCTTGGC 59.477 50.000 0.00 0.00 0.00 4.52
3892 4967 0.534877 TCGTTGTGTGATGCTTGGCT 60.535 50.000 0.00 0.00 0.00 4.75
3893 4968 0.110056 CGTTGTGTGATGCTTGGCTC 60.110 55.000 0.00 0.00 0.00 4.70
3894 4969 0.110056 GTTGTGTGATGCTTGGCTCG 60.110 55.000 0.00 0.00 0.00 5.03
3895 4970 1.855213 TTGTGTGATGCTTGGCTCGC 61.855 55.000 0.00 0.00 0.00 5.03
3896 4971 2.747460 TGTGATGCTTGGCTCGCC 60.747 61.111 0.00 0.00 0.00 5.54
3897 4972 2.747460 GTGATGCTTGGCTCGCCA 60.747 61.111 6.52 6.52 45.63 5.69
3898 4973 2.117156 GTGATGCTTGGCTCGCCAT 61.117 57.895 12.00 0.00 46.64 4.40
3899 4974 1.378911 TGATGCTTGGCTCGCCATT 60.379 52.632 12.00 0.00 46.64 3.16
3900 4975 0.107263 TGATGCTTGGCTCGCCATTA 60.107 50.000 12.00 1.79 46.64 1.90
3901 4976 0.590195 GATGCTTGGCTCGCCATTAG 59.410 55.000 12.00 8.30 46.64 1.73
3902 4977 1.450531 ATGCTTGGCTCGCCATTAGC 61.451 55.000 21.82 21.82 46.64 3.09
3911 4986 4.438346 GCCATTAGCGTCGACCAT 57.562 55.556 10.58 0.72 0.00 3.55
3912 4987 2.690326 GCCATTAGCGTCGACCATT 58.310 52.632 10.58 0.00 0.00 3.16
3913 4988 1.014352 GCCATTAGCGTCGACCATTT 58.986 50.000 10.58 0.00 0.00 2.32
3914 4989 1.400494 GCCATTAGCGTCGACCATTTT 59.600 47.619 10.58 0.00 0.00 1.82
3915 4990 2.538939 GCCATTAGCGTCGACCATTTTC 60.539 50.000 10.58 0.00 0.00 2.29
3916 4991 2.675844 CCATTAGCGTCGACCATTTTCA 59.324 45.455 10.58 0.00 0.00 2.69
3917 4992 3.126171 CCATTAGCGTCGACCATTTTCAA 59.874 43.478 10.58 0.00 0.00 2.69
3918 4993 4.334443 CATTAGCGTCGACCATTTTCAAG 58.666 43.478 10.58 0.00 0.00 3.02
3919 4994 1.156736 AGCGTCGACCATTTTCAAGG 58.843 50.000 10.58 0.00 0.00 3.61
3920 4995 0.454452 GCGTCGACCATTTTCAAGGC 60.454 55.000 10.58 0.00 0.00 4.35
3921 4996 0.871722 CGTCGACCATTTTCAAGGCA 59.128 50.000 10.58 0.00 0.00 4.75
3922 4997 1.399727 CGTCGACCATTTTCAAGGCAC 60.400 52.381 10.58 0.00 0.00 5.01
3923 4998 1.606668 GTCGACCATTTTCAAGGCACA 59.393 47.619 3.51 0.00 0.00 4.57
3924 4999 1.879380 TCGACCATTTTCAAGGCACAG 59.121 47.619 0.00 0.00 0.00 3.66
3925 5000 1.879380 CGACCATTTTCAAGGCACAGA 59.121 47.619 0.00 0.00 0.00 3.41
3926 5001 2.095567 CGACCATTTTCAAGGCACAGAG 60.096 50.000 0.00 0.00 0.00 3.35
3927 5002 1.615392 ACCATTTTCAAGGCACAGAGC 59.385 47.619 0.00 0.00 44.65 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.469940 CGTACGCTTTCCTCATCTGCT 60.470 52.381 0.52 0.00 0.00 4.24
1 2 0.924090 CGTACGCTTTCCTCATCTGC 59.076 55.000 0.52 0.00 0.00 4.26
2 3 1.135083 ACCGTACGCTTTCCTCATCTG 60.135 52.381 10.49 0.00 0.00 2.90
3 4 1.183549 ACCGTACGCTTTCCTCATCT 58.816 50.000 10.49 0.00 0.00 2.90
4 5 2.159338 TGTACCGTACGCTTTCCTCATC 60.159 50.000 10.49 0.00 0.00 2.92
5 6 1.820519 TGTACCGTACGCTTTCCTCAT 59.179 47.619 10.49 0.00 0.00 2.90
6 7 1.246649 TGTACCGTACGCTTTCCTCA 58.753 50.000 10.49 0.00 0.00 3.86
7 8 2.457970 GATGTACCGTACGCTTTCCTC 58.542 52.381 10.49 0.00 0.00 3.71
8 9 1.202222 CGATGTACCGTACGCTTTCCT 60.202 52.381 10.49 0.00 0.00 3.36
9 10 1.194495 CGATGTACCGTACGCTTTCC 58.806 55.000 10.49 0.00 0.00 3.13
10 11 1.900237 ACGATGTACCGTACGCTTTC 58.100 50.000 10.49 1.09 41.44 2.62
11 12 2.352503 AACGATGTACCGTACGCTTT 57.647 45.000 10.49 0.00 42.54 3.51
12 13 2.161410 TGTAACGATGTACCGTACGCTT 59.839 45.455 10.49 0.80 42.54 4.68
13 14 1.737236 TGTAACGATGTACCGTACGCT 59.263 47.619 10.49 0.00 42.54 5.07
14 15 2.172593 TGTAACGATGTACCGTACGC 57.827 50.000 10.49 0.00 42.54 4.42
15 16 4.097714 ACAATGTAACGATGTACCGTACG 58.902 43.478 8.69 8.69 42.54 3.67
16 17 5.345741 ACAACAATGTAACGATGTACCGTAC 59.654 40.000 1.40 1.40 38.40 3.67
17 18 5.468592 ACAACAATGTAACGATGTACCGTA 58.531 37.500 0.00 0.00 38.40 4.02
18 19 4.309099 ACAACAATGTAACGATGTACCGT 58.691 39.130 0.00 0.00 38.24 4.83
19 20 4.386350 TGACAACAATGTAACGATGTACCG 59.614 41.667 0.00 0.00 40.74 4.02
20 21 5.849357 TGACAACAATGTAACGATGTACC 57.151 39.130 0.00 0.00 40.74 3.34
21 22 7.349711 ACTTTGACAACAATGTAACGATGTAC 58.650 34.615 0.00 0.00 40.74 2.90
22 23 7.485418 ACTTTGACAACAATGTAACGATGTA 57.515 32.000 0.00 0.00 40.74 2.29
23 24 6.371809 ACTTTGACAACAATGTAACGATGT 57.628 33.333 0.00 0.00 40.74 3.06
24 25 6.344936 GCAACTTTGACAACAATGTAACGATG 60.345 38.462 0.00 0.00 41.36 3.84
25 26 5.685511 GCAACTTTGACAACAATGTAACGAT 59.314 36.000 0.00 0.00 41.36 3.73
26 27 5.031578 GCAACTTTGACAACAATGTAACGA 58.968 37.500 0.00 0.00 41.36 3.85
27 28 4.086327 CGCAACTTTGACAACAATGTAACG 60.086 41.667 0.00 0.00 41.36 3.18
28 29 5.031578 TCGCAACTTTGACAACAATGTAAC 58.968 37.500 0.00 0.00 41.36 2.50
29 30 5.031578 GTCGCAACTTTGACAACAATGTAA 58.968 37.500 0.00 0.00 41.36 2.41
30 31 4.095036 TGTCGCAACTTTGACAACAATGTA 59.905 37.500 0.00 0.00 41.82 2.29
31 32 3.119673 TGTCGCAACTTTGACAACAATGT 60.120 39.130 0.00 0.00 41.82 2.71
32 33 3.433709 TGTCGCAACTTTGACAACAATG 58.566 40.909 0.00 0.00 41.82 2.82
33 34 3.773860 TGTCGCAACTTTGACAACAAT 57.226 38.095 0.00 0.00 41.82 2.71
43 44 3.913548 TGCATTAACATGTCGCAACTT 57.086 38.095 0.00 0.00 32.28 2.66
46 47 2.790812 GCGATGCATTAACATGTCGCAA 60.791 45.455 18.98 5.00 46.56 4.85
50 51 1.921573 GCGGCGATGCATTAACATGTC 60.922 52.381 12.98 0.00 32.28 3.06
58 59 1.032014 AAAATAGGCGGCGATGCATT 58.968 45.000 12.98 0.39 36.28 3.56
59 60 1.032014 AAAAATAGGCGGCGATGCAT 58.968 45.000 12.98 0.00 36.28 3.96
66 67 6.735130 AGAAATATGTACAAAAATAGGCGGC 58.265 36.000 0.00 0.00 0.00 6.53
86 91 2.615493 GCCCGAGAACATCTCCAAGAAA 60.615 50.000 1.98 0.00 40.34 2.52
98 103 4.838046 GCCTAAGAGCCCGAGAAC 57.162 61.111 0.00 0.00 0.00 3.01
109 114 3.010250 AGGTAAAAGTTCCCAGGCCTAAG 59.990 47.826 3.98 0.00 0.00 2.18
114 119 3.552875 GGATAGGTAAAAGTTCCCAGGC 58.447 50.000 0.00 0.00 0.00 4.85
115 120 3.433173 CCGGATAGGTAAAAGTTCCCAGG 60.433 52.174 0.00 0.00 34.51 4.45
116 121 3.805207 CCGGATAGGTAAAAGTTCCCAG 58.195 50.000 0.00 0.00 34.51 4.45
118 123 2.172082 AGCCGGATAGGTAAAAGTTCCC 59.828 50.000 5.05 0.00 43.70 3.97
129 134 1.149174 ATGCCACAAGCCGGATAGG 59.851 57.895 5.05 2.93 42.71 2.57
135 140 1.867233 GACTATACATGCCACAAGCCG 59.133 52.381 0.00 0.00 42.71 5.52
137 142 2.874701 CCTGACTATACATGCCACAAGC 59.125 50.000 0.00 0.00 44.14 4.01
138 143 4.122776 GTCCTGACTATACATGCCACAAG 58.877 47.826 0.00 0.00 0.00 3.16
209 223 1.003233 GAACGGTCTTCCTTCATGGGT 59.997 52.381 0.00 0.00 36.20 4.51
214 228 2.169769 ACACAAGAACGGTCTTCCTTCA 59.830 45.455 14.12 0.00 42.45 3.02
261 275 5.767665 TCATCTCGAAACAATCCCTCAAAAA 59.232 36.000 0.00 0.00 0.00 1.94
262 276 5.312895 TCATCTCGAAACAATCCCTCAAAA 58.687 37.500 0.00 0.00 0.00 2.44
263 277 4.905429 TCATCTCGAAACAATCCCTCAAA 58.095 39.130 0.00 0.00 0.00 2.69
264 278 4.551702 TCATCTCGAAACAATCCCTCAA 57.448 40.909 0.00 0.00 0.00 3.02
265 279 4.760530 ATCATCTCGAAACAATCCCTCA 57.239 40.909 0.00 0.00 0.00 3.86
266 280 6.127897 ACAAAATCATCTCGAAACAATCCCTC 60.128 38.462 0.00 0.00 0.00 4.30
267 281 5.711976 ACAAAATCATCTCGAAACAATCCCT 59.288 36.000 0.00 0.00 0.00 4.20
268 282 5.954335 ACAAAATCATCTCGAAACAATCCC 58.046 37.500 0.00 0.00 0.00 3.85
269 283 7.382218 ACAAACAAAATCATCTCGAAACAATCC 59.618 33.333 0.00 0.00 0.00 3.01
270 284 8.285776 ACAAACAAAATCATCTCGAAACAATC 57.714 30.769 0.00 0.00 0.00 2.67
271 285 9.743057 TTACAAACAAAATCATCTCGAAACAAT 57.257 25.926 0.00 0.00 0.00 2.71
272 286 9.232082 CTTACAAACAAAATCATCTCGAAACAA 57.768 29.630 0.00 0.00 0.00 2.83
273 287 8.402472 ACTTACAAACAAAATCATCTCGAAACA 58.598 29.630 0.00 0.00 0.00 2.83
274 288 8.782533 ACTTACAAACAAAATCATCTCGAAAC 57.217 30.769 0.00 0.00 0.00 2.78
275 289 8.836413 AGACTTACAAACAAAATCATCTCGAAA 58.164 29.630 0.00 0.00 0.00 3.46
276 290 8.378172 AGACTTACAAACAAAATCATCTCGAA 57.622 30.769 0.00 0.00 0.00 3.71
277 291 7.962964 AGACTTACAAACAAAATCATCTCGA 57.037 32.000 0.00 0.00 0.00 4.04
353 369 3.306818 AGTAGACAACGAGACGAAAAGC 58.693 45.455 0.00 0.00 0.00 3.51
367 383 5.893687 TGAACACGAACTACAAAGTAGACA 58.106 37.500 10.87 0.00 33.75 3.41
368 384 6.639686 TGATGAACACGAACTACAAAGTAGAC 59.360 38.462 10.87 4.27 33.75 2.59
369 385 6.741109 TGATGAACACGAACTACAAAGTAGA 58.259 36.000 10.87 0.00 33.75 2.59
373 389 9.265938 CATTATTGATGAACACGAACTACAAAG 57.734 33.333 0.00 0.00 38.03 2.77
374 390 8.779303 ACATTATTGATGAACACGAACTACAAA 58.221 29.630 0.00 0.00 39.15 2.83
375 391 8.317891 ACATTATTGATGAACACGAACTACAA 57.682 30.769 0.00 0.00 39.15 2.41
376 392 7.899178 ACATTATTGATGAACACGAACTACA 57.101 32.000 0.00 0.00 39.15 2.74
377 393 9.607285 AAAACATTATTGATGAACACGAACTAC 57.393 29.630 0.00 0.00 39.15 2.73
378 394 9.820229 GAAAACATTATTGATGAACACGAACTA 57.180 29.630 0.00 0.00 39.15 2.24
379 395 8.567948 AGAAAACATTATTGATGAACACGAACT 58.432 29.630 0.00 0.00 39.15 3.01
380 396 8.728088 AGAAAACATTATTGATGAACACGAAC 57.272 30.769 0.00 0.00 39.15 3.95
381 397 8.563732 TGAGAAAACATTATTGATGAACACGAA 58.436 29.630 0.00 0.00 39.15 3.85
382 398 8.093659 TGAGAAAACATTATTGATGAACACGA 57.906 30.769 0.00 0.00 39.15 4.35
383 399 8.726650 TTGAGAAAACATTATTGATGAACACG 57.273 30.769 0.00 0.00 39.15 4.49
385 401 9.558648 CGATTGAGAAAACATTATTGATGAACA 57.441 29.630 0.00 0.00 39.15 3.18
386 402 9.773328 TCGATTGAGAAAACATTATTGATGAAC 57.227 29.630 0.00 0.00 39.15 3.18
404 420 9.992910 TGACTTGATTATCATTTTTCGATTGAG 57.007 29.630 0.00 0.00 0.00 3.02
430 447 6.316140 TCGCAAAATGTTACTAGCTGATTGAT 59.684 34.615 0.00 0.00 0.00 2.57
442 459 6.904543 ACAAAGCAATTTTCGCAAAATGTTAC 59.095 30.769 7.36 0.00 40.05 2.50
445 462 5.482686 ACAAAGCAATTTTCGCAAAATGT 57.517 30.435 7.36 1.17 40.05 2.71
483 500 5.774690 TGAAGTAGCCAATCAAGTCCATTTT 59.225 36.000 0.00 0.00 0.00 1.82
486 503 4.225942 TCTGAAGTAGCCAATCAAGTCCAT 59.774 41.667 0.00 0.00 0.00 3.41
536 554 6.848069 TCCTTCCTTTGACTCCATTCTAAAA 58.152 36.000 0.00 0.00 0.00 1.52
592 613 4.864334 CTGCTGGGCCGGATGGAC 62.864 72.222 18.84 0.00 45.75 4.02
616 637 2.113807 GTGGGTAGTGGGTAGGGTTAG 58.886 57.143 0.00 0.00 0.00 2.34
641 662 2.146998 CTGGGGTAGGTAGGGTAGGTA 58.853 57.143 0.00 0.00 0.00 3.08
642 663 0.939698 CTGGGGTAGGTAGGGTAGGT 59.060 60.000 0.00 0.00 0.00 3.08
643 664 0.939698 ACTGGGGTAGGTAGGGTAGG 59.060 60.000 0.00 0.00 0.00 3.18
644 665 1.858246 AGACTGGGGTAGGTAGGGTAG 59.142 57.143 0.00 0.00 0.00 3.18
645 666 1.855599 GAGACTGGGGTAGGTAGGGTA 59.144 57.143 0.00 0.00 0.00 3.69
646 667 0.635555 GAGACTGGGGTAGGTAGGGT 59.364 60.000 0.00 0.00 0.00 4.34
647 668 0.105607 GGAGACTGGGGTAGGTAGGG 60.106 65.000 0.00 0.00 0.00 3.53
663 684 1.379977 TCGGTCTGTAGGGCTGGAG 60.380 63.158 0.00 0.00 0.00 3.86
664 685 1.681327 GTCGGTCTGTAGGGCTGGA 60.681 63.158 0.00 0.00 0.00 3.86
674 695 0.109689 GACAGGAAGTCGTCGGTCTG 60.110 60.000 0.00 0.00 37.53 3.51
676 697 4.863984 GACAGGAAGTCGTCGGTC 57.136 61.111 0.00 0.00 37.53 4.79
755 778 1.228510 CAAGGGGATTCAGAGGCCC 59.771 63.158 0.00 0.00 41.28 5.80
763 786 0.922626 AAGGAGGAGCAAGGGGATTC 59.077 55.000 0.00 0.00 0.00 2.52
781 804 2.244117 GATGTGCTGCCTCCTCGGAA 62.244 60.000 0.00 0.00 33.16 4.30
782 805 2.685017 ATGTGCTGCCTCCTCGGA 60.685 61.111 0.00 0.00 33.16 4.55
800 840 2.879070 GATCACGCCGCTGATGCTG 61.879 63.158 9.25 0.00 36.97 4.41
801 841 2.587194 GATCACGCCGCTGATGCT 60.587 61.111 9.25 0.00 36.97 3.79
802 842 2.587194 AGATCACGCCGCTGATGC 60.587 61.111 9.25 3.61 30.62 3.91
805 845 1.066422 GATCAGATCACGCCGCTGA 59.934 57.895 5.44 0.00 42.25 4.26
807 847 2.419198 GGATCAGATCACGCCGCT 59.581 61.111 12.66 0.00 0.00 5.52
821 861 2.235016 GATCAGTCTAGCAGACCGGAT 58.765 52.381 9.46 14.82 46.18 4.18
824 864 0.317436 GCGATCAGTCTAGCAGACCG 60.317 60.000 11.24 9.27 46.18 4.79
836 876 2.591571 TGGAGTGAATGAGCGATCAG 57.408 50.000 10.08 0.00 0.00 2.90
1147 1195 1.167851 CACCATGTAACAGGGCTGTG 58.832 55.000 0.00 0.00 44.13 3.66
1169 1217 1.077123 CAGAGTAACAGCAGCAGCAG 58.923 55.000 3.17 0.00 45.49 4.24
1170 1218 0.394192 ACAGAGTAACAGCAGCAGCA 59.606 50.000 3.17 0.00 45.49 4.41
1171 1219 1.517242 AACAGAGTAACAGCAGCAGC 58.483 50.000 0.00 0.00 42.56 5.25
1172 1220 7.545362 AATAATAACAGAGTAACAGCAGCAG 57.455 36.000 0.00 0.00 0.00 4.24
1173 1221 7.494625 GGTAATAATAACAGAGTAACAGCAGCA 59.505 37.037 0.00 0.00 0.00 4.41
1174 1222 7.041984 GGGTAATAATAACAGAGTAACAGCAGC 60.042 40.741 0.00 0.00 0.00 5.25
1197 1245 9.791801 AATTGCAAATTAGTAATTTTCTTGGGT 57.208 25.926 16.55 0.00 38.97 4.51
1202 1250 9.154847 GGCTCAATTGCAAATTAGTAATTTTCT 57.845 29.630 16.55 0.00 38.97 2.52
1203 1251 9.154847 AGGCTCAATTGCAAATTAGTAATTTTC 57.845 29.630 16.55 13.16 38.97 2.29
1217 1270 2.580962 TGTTGTGTAGGCTCAATTGCA 58.419 42.857 0.00 0.00 31.87 4.08
1221 1274 6.594788 AATCATTTGTTGTGTAGGCTCAAT 57.405 33.333 0.00 0.00 31.87 2.57
1321 1396 6.422333 AGTAGTAGTAGTAGAAAGGGACACC 58.578 44.000 0.00 0.00 0.00 4.16
1326 1401 9.762933 CAGTAGTAGTAGTAGTAGTAGAAAGGG 57.237 40.741 0.49 0.00 0.00 3.95
1349 1424 9.750783 TTCTAACACTTAGAATCTACTACCAGT 57.249 33.333 1.10 0.00 44.85 4.00
1373 1665 1.133976 AGGCTGCTGTGTGGGATATTC 60.134 52.381 0.00 0.00 0.00 1.75
1383 1675 1.269413 CCAACTTTTCAGGCTGCTGTG 60.269 52.381 10.34 2.83 0.00 3.66
1403 1695 1.919600 AAGGAGGAGAGGGCATGTGC 61.920 60.000 0.00 0.00 41.14 4.57
1483 1795 1.155042 GGCACAGAGAGAACAGCTTG 58.845 55.000 0.00 0.00 0.00 4.01
1607 1920 5.001874 CACTCCCCAAGTTACCTCTTAAAC 58.998 45.833 0.00 0.00 35.45 2.01
1623 1936 3.699538 ACTGTTTCTTGTTTTCACTCCCC 59.300 43.478 0.00 0.00 0.00 4.81
1629 1942 4.095782 CCGGAGAACTGTTTCTTGTTTTCA 59.904 41.667 0.00 0.00 42.53 2.69
1642 1955 0.321671 TTCTTGGAGCCGGAGAACTG 59.678 55.000 5.05 0.00 0.00 3.16
1665 1978 3.841643 CTCACTTGCAATGGATTGTTCC 58.158 45.455 0.00 0.00 42.94 3.62
1699 2012 1.792949 GCACCTGTCTGTACGACTTTG 59.207 52.381 15.47 11.47 43.25 2.77
1713 2026 2.421073 CCATGTAGATGTGTTGCACCTG 59.579 50.000 0.00 0.00 32.73 4.00
1714 2027 2.305635 TCCATGTAGATGTGTTGCACCT 59.694 45.455 0.00 0.00 32.73 4.00
1715 2028 2.710377 TCCATGTAGATGTGTTGCACC 58.290 47.619 0.00 0.00 32.73 5.01
1744 2057 8.007405 AGGTTTTAACTAAAATCTGTGTTGCT 57.993 30.769 6.88 0.00 43.04 3.91
1770 2083 5.469479 CGGATTTGCTAAACTTCCATTTGT 58.531 37.500 1.01 0.00 0.00 2.83
1771 2084 4.864247 CCGGATTTGCTAAACTTCCATTTG 59.136 41.667 0.00 0.00 0.00 2.32
1784 2097 5.913137 TTTCAATCATTACCGGATTTGCT 57.087 34.783 9.46 0.00 32.86 3.91
1818 2326 7.485913 CCAGATTTGCATAATGTTCAACTGTAC 59.514 37.037 0.00 0.00 0.00 2.90
1823 2331 7.008266 CGTTACCAGATTTGCATAATGTTCAAC 59.992 37.037 0.00 0.00 0.00 3.18
1824 2332 7.026562 CGTTACCAGATTTGCATAATGTTCAA 58.973 34.615 0.00 0.00 0.00 2.69
1847 2355 5.494390 AACCAAACCTCCTAAACTATCGT 57.506 39.130 0.00 0.00 0.00 3.73
1849 2357 8.098912 TCAAGTAACCAAACCTCCTAAACTATC 58.901 37.037 0.00 0.00 0.00 2.08
1857 2365 6.609616 TCAAATTTCAAGTAACCAAACCTCCT 59.390 34.615 0.00 0.00 0.00 3.69
1933 2441 7.117812 CAGTCACCGCAACCCTATATAATTTAG 59.882 40.741 0.00 0.00 0.00 1.85
1957 2465 5.934625 AGAAATACAAGAACTGCCTGTACAG 59.065 40.000 16.34 16.34 43.59 2.74
1981 2489 1.618837 GTGGCACTAAGACTGGAGACA 59.381 52.381 11.13 0.00 39.59 3.41
1982 2490 1.896465 AGTGGCACTAAGACTGGAGAC 59.104 52.381 20.61 0.00 0.00 3.36
2037 2545 0.456142 TGCTACGTCTGCAGCTTACG 60.456 55.000 20.96 20.96 42.17 3.18
2048 2556 1.202582 ACATGACCTGACTGCTACGTC 59.797 52.381 0.00 0.00 34.52 4.34
2181 2689 6.568271 GCAAATTTTATCAAAGGGGCAAACAG 60.568 38.462 0.00 0.00 0.00 3.16
2182 2690 5.240403 GCAAATTTTATCAAAGGGGCAAACA 59.760 36.000 0.00 0.00 0.00 2.83
2351 2859 1.453524 CGATGAGATTGATCGGCGTTC 59.546 52.381 6.85 9.18 39.23 3.95
2374 2882 4.523083 TGATTACCGAATCTTCTTTGGGG 58.477 43.478 0.00 0.00 41.87 4.96
2414 2922 6.090493 TCGAGAGAACCGTCGACATATATTAG 59.910 42.308 17.16 0.00 40.19 1.73
2437 2945 3.065233 TGATCCGGCATCATTTTCTTTCG 59.935 43.478 11.18 0.00 36.51 3.46
2526 3042 7.257722 CGCAGATGTAAAACTGGGAAAATTAT 58.742 34.615 1.34 0.00 45.50 1.28
2538 3054 4.921470 TTGTAGAGCGCAGATGTAAAAC 57.079 40.909 11.47 0.00 0.00 2.43
2563 3079 6.964807 TGCTGGCTGATTCATAATTGTTAT 57.035 33.333 0.00 0.00 0.00 1.89
2585 3101 4.109766 AGTTCAAATCGATGCATGCATTG 58.890 39.130 33.60 33.60 38.77 2.82
2610 3126 9.189723 AGTTCATTACAACGAGACTACTAAAAC 57.810 33.333 0.00 0.00 0.00 2.43
2618 3134 5.009710 TCAGTCAGTTCATTACAACGAGACT 59.990 40.000 0.00 7.99 42.34 3.24
2619 3135 5.220381 TCAGTCAGTTCATTACAACGAGAC 58.780 41.667 0.00 0.00 36.89 3.36
2620 3136 5.447624 TCAGTCAGTTCATTACAACGAGA 57.552 39.130 0.00 0.00 0.00 4.04
2622 3138 4.556233 CCTCAGTCAGTTCATTACAACGA 58.444 43.478 0.00 0.00 0.00 3.85
2647 3163 4.039004 TCTGCAGGCACAAACATTAACATT 59.961 37.500 15.13 0.00 0.00 2.71
2663 3179 4.722700 CCCACCGGGTTCTGCAGG 62.723 72.222 15.13 0.00 38.25 4.85
2724 3240 4.020617 CCCTTGAGCTGGACGGCA 62.021 66.667 5.85 0.00 34.17 5.69
2838 3354 2.511145 GCGCAAGAGGAGGAGCAG 60.511 66.667 0.30 0.00 43.02 4.24
2961 3477 0.383491 CGCACACAGCAAGAACGAAG 60.383 55.000 0.00 0.00 46.13 3.79
2962 3478 1.087202 ACGCACACAGCAAGAACGAA 61.087 50.000 0.00 0.00 46.13 3.85
2963 3479 1.087202 AACGCACACAGCAAGAACGA 61.087 50.000 0.00 0.00 46.13 3.85
2964 3480 0.925267 CAACGCACACAGCAAGAACG 60.925 55.000 0.00 0.00 46.13 3.95
3032 3554 4.992951 TGAGCCAGAAATACATCATCATCG 59.007 41.667 0.00 0.00 0.00 3.84
3090 3612 0.813210 CCCAAGCGATCCTTCTCTGC 60.813 60.000 0.00 0.00 0.00 4.26
3097 3619 2.592308 GAAGGCCCAAGCGATCCT 59.408 61.111 0.00 0.00 41.24 3.24
3103 3625 2.034221 AAGGACGAAGGCCCAAGC 59.966 61.111 0.00 0.00 38.76 4.01
3108 3630 2.296752 GACTATAGGAAGGACGAAGGCC 59.703 54.545 4.43 0.00 0.00 5.19
3111 3633 4.721132 AGGAGACTATAGGAAGGACGAAG 58.279 47.826 4.43 0.00 40.61 3.79
3192 3714 3.845781 ATACACCCTGACCATCATCAC 57.154 47.619 0.00 0.00 0.00 3.06
3193 3715 6.352137 GCATATATACACCCTGACCATCATCA 60.352 42.308 0.00 0.00 0.00 3.07
3194 3716 6.051717 GCATATATACACCCTGACCATCATC 58.948 44.000 0.00 0.00 0.00 2.92
3195 3717 5.104360 GGCATATATACACCCTGACCATCAT 60.104 44.000 0.00 0.00 0.00 2.45
3196 3718 4.225042 GGCATATATACACCCTGACCATCA 59.775 45.833 0.00 0.00 0.00 3.07
3203 3725 4.640771 AACTGGGCATATATACACCCTG 57.359 45.455 19.52 19.52 43.25 4.45
3217 3739 1.745653 GAAACCATGCTCTAACTGGGC 59.254 52.381 0.00 0.00 34.21 5.36
3281 3852 3.304826 GGCAAAATATTTACGGTTTGGCG 59.695 43.478 0.01 0.00 43.62 5.69
3301 3872 4.261197 CCGAGTCATTTTATGGCTAAAGGC 60.261 45.833 0.00 0.00 46.97 4.35
3304 3875 3.311322 CGCCGAGTCATTTTATGGCTAAA 59.689 43.478 0.00 0.00 46.97 1.85
3305 3876 2.869801 CGCCGAGTCATTTTATGGCTAA 59.130 45.455 0.00 0.00 46.97 3.09
3306 3877 2.479837 CGCCGAGTCATTTTATGGCTA 58.520 47.619 0.00 0.00 46.97 3.93
3308 3879 0.317020 GCGCCGAGTCATTTTATGGC 60.317 55.000 0.00 0.00 39.10 4.40
3311 3882 1.014352 GTGGCGCCGAGTCATTTTAT 58.986 50.000 23.90 0.00 36.54 1.40
3312 3883 1.355796 CGTGGCGCCGAGTCATTTTA 61.356 55.000 23.90 0.00 36.54 1.52
3313 3884 2.677003 CGTGGCGCCGAGTCATTTT 61.677 57.895 23.90 0.00 36.54 1.82
3336 3907 2.881352 GCTAGCCAGCGACGTGTC 60.881 66.667 2.29 0.00 38.22 3.67
3385 4458 0.322997 TTACAATTGGGTCCTGGCCG 60.323 55.000 10.83 0.00 0.00 6.13
3465 4540 6.480320 GTCATATGTAGAAGCCCACTTGTTAG 59.520 42.308 1.90 0.00 35.82 2.34
3467 4542 5.186198 GTCATATGTAGAAGCCCACTTGTT 58.814 41.667 1.90 0.00 35.82 2.83
3469 4544 4.130118 GGTCATATGTAGAAGCCCACTTG 58.870 47.826 1.90 0.00 35.82 3.16
3486 4561 4.571919 TCATAAAACTCGTTTCGGGTCAT 58.428 39.130 0.00 0.00 40.83 3.06
3492 4567 6.633668 ACAGATCTCATAAAACTCGTTTCG 57.366 37.500 0.00 0.00 31.45 3.46
3500 4575 4.034510 CCGCCTGAACAGATCTCATAAAAC 59.965 45.833 3.19 0.00 0.00 2.43
3506 4581 1.266178 TTCCGCCTGAACAGATCTCA 58.734 50.000 3.19 0.00 0.00 3.27
3518 4593 0.034896 CTAAGGTGTGTGTTCCGCCT 59.965 55.000 0.00 0.00 44.57 5.52
3522 4597 2.256117 AGCACTAAGGTGTGTGTTCC 57.744 50.000 0.00 0.00 44.65 3.62
3534 4609 8.552083 TCGTTTCGGATATACTATAGCACTAA 57.448 34.615 0.00 0.00 0.00 2.24
3537 4612 8.684973 AAATCGTTTCGGATATACTATAGCAC 57.315 34.615 0.00 0.00 0.00 4.40
3564 4639 5.125739 CAGGTCTCGTAAAATCTCCTACTGT 59.874 44.000 0.00 0.00 0.00 3.55
3570 4645 2.093658 TGGCAGGTCTCGTAAAATCTCC 60.094 50.000 0.00 0.00 0.00 3.71
3618 4693 1.067364 TCTGTACGTTTTGTGGCTCGA 59.933 47.619 0.00 0.00 0.00 4.04
3619 4694 1.191647 GTCTGTACGTTTTGTGGCTCG 59.808 52.381 0.00 0.00 0.00 5.03
3621 4696 1.589803 GGTCTGTACGTTTTGTGGCT 58.410 50.000 0.00 0.00 0.00 4.75
3634 4709 0.740868 CATTGGATGCGTCGGTCTGT 60.741 55.000 0.00 0.00 0.00 3.41
3640 4715 1.009078 ACATCACATTGGATGCGTCG 58.991 50.000 12.35 0.00 46.81 5.12
3651 4726 1.475034 GGGACGTATGCCACATCACAT 60.475 52.381 0.00 0.00 36.03 3.21
3652 4727 0.107897 GGGACGTATGCCACATCACA 60.108 55.000 0.00 0.00 36.03 3.58
3653 4728 2.690326 GGGACGTATGCCACATCAC 58.310 57.895 0.00 0.00 36.03 3.06
3667 4742 1.461897 CGTAAATCCAACACACGGGAC 59.538 52.381 0.00 0.00 35.67 4.46
3668 4743 1.070445 ACGTAAATCCAACACACGGGA 59.930 47.619 0.00 0.00 36.95 5.14
3669 4744 1.515081 ACGTAAATCCAACACACGGG 58.485 50.000 0.00 0.00 36.95 5.28
3670 4745 2.544686 TCAACGTAAATCCAACACACGG 59.455 45.455 0.00 0.00 36.95 4.94
3671 4746 3.363575 CCTCAACGTAAATCCAACACACG 60.364 47.826 0.00 0.00 38.52 4.49
3672 4747 3.810941 TCCTCAACGTAAATCCAACACAC 59.189 43.478 0.00 0.00 0.00 3.82
3673 4748 4.062293 CTCCTCAACGTAAATCCAACACA 58.938 43.478 0.00 0.00 0.00 3.72
3674 4749 3.435671 CCTCCTCAACGTAAATCCAACAC 59.564 47.826 0.00 0.00 0.00 3.32
3675 4750 3.071892 ACCTCCTCAACGTAAATCCAACA 59.928 43.478 0.00 0.00 0.00 3.33
3676 4751 3.671716 ACCTCCTCAACGTAAATCCAAC 58.328 45.455 0.00 0.00 0.00 3.77
3677 4752 4.360951 AACCTCCTCAACGTAAATCCAA 57.639 40.909 0.00 0.00 0.00 3.53
3678 4753 4.069304 CAAACCTCCTCAACGTAAATCCA 58.931 43.478 0.00 0.00 0.00 3.41
3679 4754 3.119955 GCAAACCTCCTCAACGTAAATCC 60.120 47.826 0.00 0.00 0.00 3.01
3680 4755 3.424433 CGCAAACCTCCTCAACGTAAATC 60.424 47.826 0.00 0.00 0.00 2.17
3681 4756 2.482721 CGCAAACCTCCTCAACGTAAAT 59.517 45.455 0.00 0.00 0.00 1.40
3682 4757 1.868498 CGCAAACCTCCTCAACGTAAA 59.132 47.619 0.00 0.00 0.00 2.01
3683 4758 1.504359 CGCAAACCTCCTCAACGTAA 58.496 50.000 0.00 0.00 0.00 3.18
3684 4759 0.320073 CCGCAAACCTCCTCAACGTA 60.320 55.000 0.00 0.00 0.00 3.57
3685 4760 1.597027 CCGCAAACCTCCTCAACGT 60.597 57.895 0.00 0.00 0.00 3.99
3686 4761 2.325082 CCCGCAAACCTCCTCAACG 61.325 63.158 0.00 0.00 0.00 4.10
3687 4762 0.955919 CTCCCGCAAACCTCCTCAAC 60.956 60.000 0.00 0.00 0.00 3.18
3688 4763 1.374947 CTCCCGCAAACCTCCTCAA 59.625 57.895 0.00 0.00 0.00 3.02
3689 4764 1.827399 GACTCCCGCAAACCTCCTCA 61.827 60.000 0.00 0.00 0.00 3.86
3690 4765 1.079057 GACTCCCGCAAACCTCCTC 60.079 63.158 0.00 0.00 0.00 3.71
3691 4766 1.415672 TTGACTCCCGCAAACCTCCT 61.416 55.000 0.00 0.00 0.00 3.69
3692 4767 0.955919 CTTGACTCCCGCAAACCTCC 60.956 60.000 0.00 0.00 0.00 4.30
3693 4768 0.034896 TCTTGACTCCCGCAAACCTC 59.965 55.000 0.00 0.00 0.00 3.85
3694 4769 0.250338 GTCTTGACTCCCGCAAACCT 60.250 55.000 0.00 0.00 0.00 3.50
3695 4770 1.235281 GGTCTTGACTCCCGCAAACC 61.235 60.000 0.61 0.00 0.00 3.27
3696 4771 0.250338 AGGTCTTGACTCCCGCAAAC 60.250 55.000 0.61 0.00 0.00 2.93
3697 4772 0.034896 GAGGTCTTGACTCCCGCAAA 59.965 55.000 0.61 0.00 0.00 3.68
3698 4773 0.832135 AGAGGTCTTGACTCCCGCAA 60.832 55.000 0.61 0.00 35.58 4.85
3699 4774 0.039180 TAGAGGTCTTGACTCCCGCA 59.961 55.000 0.61 0.00 35.58 5.69
3700 4775 0.456628 GTAGAGGTCTTGACTCCCGC 59.543 60.000 0.61 0.00 35.58 6.13
3701 4776 1.746220 CAGTAGAGGTCTTGACTCCCG 59.254 57.143 0.61 0.00 35.58 5.14
3702 4777 1.478916 GCAGTAGAGGTCTTGACTCCC 59.521 57.143 0.61 0.00 35.58 4.30
3703 4778 1.133407 CGCAGTAGAGGTCTTGACTCC 59.867 57.143 0.61 0.00 35.58 3.85
3704 4779 1.813786 ACGCAGTAGAGGTCTTGACTC 59.186 52.381 0.61 0.00 41.94 3.36
3705 4780 1.912417 ACGCAGTAGAGGTCTTGACT 58.088 50.000 0.61 0.00 41.94 3.41
3706 4781 2.329379 CAACGCAGTAGAGGTCTTGAC 58.671 52.381 0.00 0.00 45.00 3.18
3707 4782 1.272490 CCAACGCAGTAGAGGTCTTGA 59.728 52.381 0.00 0.00 45.00 3.02
3708 4783 1.673033 CCCAACGCAGTAGAGGTCTTG 60.673 57.143 0.00 0.00 45.00 3.02
3709 4784 0.608640 CCCAACGCAGTAGAGGTCTT 59.391 55.000 0.00 0.00 45.00 3.01
3710 4785 1.258445 CCCCAACGCAGTAGAGGTCT 61.258 60.000 0.00 0.00 45.00 3.85
3711 4786 1.218316 CCCCAACGCAGTAGAGGTC 59.782 63.158 0.00 0.00 45.00 3.85
3712 4787 1.229082 TCCCCAACGCAGTAGAGGT 60.229 57.895 0.00 0.00 45.00 3.85
3713 4788 1.517832 CTCCCCAACGCAGTAGAGG 59.482 63.158 0.00 0.00 45.00 3.69
3714 4789 1.258445 ACCTCCCCAACGCAGTAGAG 61.258 60.000 0.00 0.00 45.00 2.43
3715 4790 0.834687 AACCTCCCCAACGCAGTAGA 60.835 55.000 0.00 0.00 45.00 2.59
3716 4791 0.036306 AAACCTCCCCAACGCAGTAG 59.964 55.000 0.00 0.00 45.00 2.57
3717 4792 0.250553 CAAACCTCCCCAACGCAGTA 60.251 55.000 0.00 0.00 45.00 2.74
3719 4794 2.919494 GCAAACCTCCCCAACGCAG 61.919 63.158 0.00 0.00 0.00 5.18
3720 4795 2.909965 GCAAACCTCCCCAACGCA 60.910 61.111 0.00 0.00 0.00 5.24
3721 4796 4.038080 CGCAAACCTCCCCAACGC 62.038 66.667 0.00 0.00 0.00 4.84
3722 4797 2.281208 TCGCAAACCTCCCCAACG 60.281 61.111 0.00 0.00 0.00 4.10
3723 4798 2.626780 GCTCGCAAACCTCCCCAAC 61.627 63.158 0.00 0.00 0.00 3.77
3724 4799 2.282180 GCTCGCAAACCTCCCCAA 60.282 61.111 0.00 0.00 0.00 4.12
3725 4800 2.424842 ATTGCTCGCAAACCTCCCCA 62.425 55.000 8.54 0.00 39.55 4.96
3726 4801 0.393808 TATTGCTCGCAAACCTCCCC 60.394 55.000 8.54 0.00 39.55 4.81
3727 4802 1.459450 TTATTGCTCGCAAACCTCCC 58.541 50.000 8.54 0.00 39.55 4.30
3728 4803 3.569250 TTTTATTGCTCGCAAACCTCC 57.431 42.857 8.54 0.00 39.55 4.30
3746 4821 4.000988 CCGACTGCTAGGTGTACATTTTT 58.999 43.478 0.00 0.00 0.00 1.94
3747 4822 3.259876 TCCGACTGCTAGGTGTACATTTT 59.740 43.478 0.00 0.00 0.00 1.82
3748 4823 2.829720 TCCGACTGCTAGGTGTACATTT 59.170 45.455 0.00 0.00 0.00 2.32
3749 4824 2.453521 TCCGACTGCTAGGTGTACATT 58.546 47.619 0.00 0.00 0.00 2.71
3750 4825 2.139323 TCCGACTGCTAGGTGTACAT 57.861 50.000 0.00 0.00 0.00 2.29
3751 4826 2.139323 ATCCGACTGCTAGGTGTACA 57.861 50.000 0.00 0.00 0.00 2.90
3752 4827 4.850347 ATAATCCGACTGCTAGGTGTAC 57.150 45.455 0.00 0.00 0.00 2.90
3753 4828 4.453478 CGTATAATCCGACTGCTAGGTGTA 59.547 45.833 0.00 0.00 0.00 2.90
3754 4829 3.252701 CGTATAATCCGACTGCTAGGTGT 59.747 47.826 0.00 0.00 0.00 4.16
3755 4830 3.822996 CGTATAATCCGACTGCTAGGTG 58.177 50.000 0.00 0.00 0.00 4.00
3756 4831 2.228343 GCGTATAATCCGACTGCTAGGT 59.772 50.000 0.00 0.00 0.00 3.08
3757 4832 2.415625 GGCGTATAATCCGACTGCTAGG 60.416 54.545 0.00 0.00 0.00 3.02
3758 4833 2.864968 GGCGTATAATCCGACTGCTAG 58.135 52.381 0.00 0.00 0.00 3.42
3760 4835 3.888093 GGCGTATAATCCGACTGCT 57.112 52.632 0.00 0.00 0.00 4.24
3766 4841 3.096461 CGTCTAATCGGCGTATAATCCG 58.904 50.000 6.85 7.41 46.52 4.18
3767 4842 3.432782 CCGTCTAATCGGCGTATAATCC 58.567 50.000 6.85 0.00 43.96 3.01
3778 4853 2.240493 ATCAAAGGCCCGTCTAATCG 57.760 50.000 0.00 0.00 0.00 3.34
3779 4854 2.544267 CGAATCAAAGGCCCGTCTAATC 59.456 50.000 0.00 0.00 0.00 1.75
3780 4855 2.561569 CGAATCAAAGGCCCGTCTAAT 58.438 47.619 0.00 0.00 0.00 1.73
3781 4856 1.406341 CCGAATCAAAGGCCCGTCTAA 60.406 52.381 0.00 0.00 0.00 2.10
3782 4857 0.177141 CCGAATCAAAGGCCCGTCTA 59.823 55.000 0.00 0.00 0.00 2.59
3783 4858 1.078426 CCGAATCAAAGGCCCGTCT 60.078 57.895 0.00 0.00 0.00 4.18
3784 4859 1.078708 TCCGAATCAAAGGCCCGTC 60.079 57.895 0.00 0.00 0.00 4.79
3785 4860 1.376812 GTCCGAATCAAAGGCCCGT 60.377 57.895 0.00 0.00 0.00 5.28
3786 4861 2.461110 CGTCCGAATCAAAGGCCCG 61.461 63.158 0.00 0.00 0.00 6.13
3787 4862 0.463833 ATCGTCCGAATCAAAGGCCC 60.464 55.000 0.00 0.00 0.00 5.80
3788 4863 1.064060 CAATCGTCCGAATCAAAGGCC 59.936 52.381 0.00 0.00 0.00 5.19
3789 4864 1.064060 CCAATCGTCCGAATCAAAGGC 59.936 52.381 0.00 0.00 0.00 4.35
3790 4865 2.351726 GACCAATCGTCCGAATCAAAGG 59.648 50.000 0.00 0.00 35.23 3.11
3791 4866 2.029244 CGACCAATCGTCCGAATCAAAG 59.971 50.000 0.00 0.00 43.66 2.77
3792 4867 1.996898 CGACCAATCGTCCGAATCAAA 59.003 47.619 0.00 0.00 43.66 2.69
3793 4868 1.635844 CGACCAATCGTCCGAATCAA 58.364 50.000 0.00 0.00 43.66 2.57
3794 4869 3.339061 CGACCAATCGTCCGAATCA 57.661 52.632 0.00 0.00 43.66 2.57
3814 4889 3.835790 TTCTTTGGGTCGCCACCGG 62.836 63.158 0.00 0.00 44.91 5.28
3815 4890 2.281208 TTCTTTGGGTCGCCACCG 60.281 61.111 0.00 0.00 44.91 4.94
3816 4891 0.536460 TTCTTCTTTGGGTCGCCACC 60.536 55.000 0.00 0.00 42.90 4.61
3817 4892 0.875059 CTTCTTCTTTGGGTCGCCAC 59.125 55.000 0.00 0.00 0.00 5.01
3818 4893 0.762418 TCTTCTTCTTTGGGTCGCCA 59.238 50.000 0.00 0.00 0.00 5.69
3819 4894 1.807142 CTTCTTCTTCTTTGGGTCGCC 59.193 52.381 0.00 0.00 0.00 5.54
3820 4895 2.739379 CTCTTCTTCTTCTTTGGGTCGC 59.261 50.000 0.00 0.00 0.00 5.19
3821 4896 3.330267 CCTCTTCTTCTTCTTTGGGTCG 58.670 50.000 0.00 0.00 0.00 4.79
3822 4897 3.328050 TCCCTCTTCTTCTTCTTTGGGTC 59.672 47.826 0.00 0.00 35.20 4.46
3823 4898 3.327439 TCCCTCTTCTTCTTCTTTGGGT 58.673 45.455 0.00 0.00 35.20 4.51
3824 4899 4.331108 CTTCCCTCTTCTTCTTCTTTGGG 58.669 47.826 0.00 0.00 34.98 4.12
3825 4900 3.755905 GCTTCCCTCTTCTTCTTCTTTGG 59.244 47.826 0.00 0.00 0.00 3.28
3826 4901 4.392940 TGCTTCCCTCTTCTTCTTCTTTG 58.607 43.478 0.00 0.00 0.00 2.77
3827 4902 4.713792 TGCTTCCCTCTTCTTCTTCTTT 57.286 40.909 0.00 0.00 0.00 2.52
3828 4903 4.506448 CCTTGCTTCCCTCTTCTTCTTCTT 60.506 45.833 0.00 0.00 0.00 2.52
3829 4904 3.008923 CCTTGCTTCCCTCTTCTTCTTCT 59.991 47.826 0.00 0.00 0.00 2.85
3830 4905 3.244735 ACCTTGCTTCCCTCTTCTTCTTC 60.245 47.826 0.00 0.00 0.00 2.87
3831 4906 2.713708 ACCTTGCTTCCCTCTTCTTCTT 59.286 45.455 0.00 0.00 0.00 2.52
3832 4907 2.343625 ACCTTGCTTCCCTCTTCTTCT 58.656 47.619 0.00 0.00 0.00 2.85
3833 4908 2.869101 ACCTTGCTTCCCTCTTCTTC 57.131 50.000 0.00 0.00 0.00 2.87
3834 4909 2.443255 TGAACCTTGCTTCCCTCTTCTT 59.557 45.455 0.00 0.00 0.00 2.52
3835 4910 2.057922 TGAACCTTGCTTCCCTCTTCT 58.942 47.619 0.00 0.00 0.00 2.85
3836 4911 2.568623 TGAACCTTGCTTCCCTCTTC 57.431 50.000 0.00 0.00 0.00 2.87
3837 4912 3.532641 ATTGAACCTTGCTTCCCTCTT 57.467 42.857 0.00 0.00 0.00 2.85
3838 4913 3.532641 AATTGAACCTTGCTTCCCTCT 57.467 42.857 0.00 0.00 0.00 3.69
3839 4914 3.573967 TCAAATTGAACCTTGCTTCCCTC 59.426 43.478 0.00 0.00 0.00 4.30
3840 4915 3.575687 CTCAAATTGAACCTTGCTTCCCT 59.424 43.478 0.00 0.00 0.00 4.20
3841 4916 3.306294 CCTCAAATTGAACCTTGCTTCCC 60.306 47.826 0.00 0.00 0.00 3.97
3842 4917 3.306294 CCCTCAAATTGAACCTTGCTTCC 60.306 47.826 0.00 0.00 0.00 3.46
3843 4918 3.573967 TCCCTCAAATTGAACCTTGCTTC 59.426 43.478 0.00 0.00 0.00 3.86
3844 4919 3.575687 CTCCCTCAAATTGAACCTTGCTT 59.424 43.478 0.00 0.00 0.00 3.91
3845 4920 3.160269 CTCCCTCAAATTGAACCTTGCT 58.840 45.455 0.00 0.00 0.00 3.91
3846 4921 2.232208 CCTCCCTCAAATTGAACCTTGC 59.768 50.000 0.00 0.00 0.00 4.01
3847 4922 3.766545 TCCTCCCTCAAATTGAACCTTG 58.233 45.455 0.00 0.00 0.00 3.61
3848 4923 4.469469 TTCCTCCCTCAAATTGAACCTT 57.531 40.909 0.00 0.00 0.00 3.50
3849 4924 4.469469 TTTCCTCCCTCAAATTGAACCT 57.531 40.909 0.00 0.00 0.00 3.50
3850 4925 5.545063 TTTTTCCTCCCTCAAATTGAACC 57.455 39.130 0.00 0.00 0.00 3.62
3851 4926 5.863935 CGATTTTTCCTCCCTCAAATTGAAC 59.136 40.000 0.00 0.00 0.00 3.18
3852 4927 5.538433 ACGATTTTTCCTCCCTCAAATTGAA 59.462 36.000 0.00 0.00 0.00 2.69
3853 4928 5.076873 ACGATTTTTCCTCCCTCAAATTGA 58.923 37.500 0.00 0.00 0.00 2.57
3854 4929 5.391312 ACGATTTTTCCTCCCTCAAATTG 57.609 39.130 0.00 0.00 0.00 2.32
3855 4930 5.304357 ACAACGATTTTTCCTCCCTCAAATT 59.696 36.000 0.00 0.00 0.00 1.82
3856 4931 4.832823 ACAACGATTTTTCCTCCCTCAAAT 59.167 37.500 0.00 0.00 0.00 2.32
3857 4932 4.037446 CACAACGATTTTTCCTCCCTCAAA 59.963 41.667 0.00 0.00 0.00 2.69
3858 4933 3.568007 CACAACGATTTTTCCTCCCTCAA 59.432 43.478 0.00 0.00 0.00 3.02
3859 4934 3.146066 CACAACGATTTTTCCTCCCTCA 58.854 45.455 0.00 0.00 0.00 3.86
3860 4935 3.058224 CACACAACGATTTTTCCTCCCTC 60.058 47.826 0.00 0.00 0.00 4.30
3861 4936 2.884639 CACACAACGATTTTTCCTCCCT 59.115 45.455 0.00 0.00 0.00 4.20
3862 4937 2.882137 TCACACAACGATTTTTCCTCCC 59.118 45.455 0.00 0.00 0.00 4.30
3863 4938 4.475944 CATCACACAACGATTTTTCCTCC 58.524 43.478 0.00 0.00 0.00 4.30
3864 4939 3.914364 GCATCACACAACGATTTTTCCTC 59.086 43.478 0.00 0.00 0.00 3.71
3865 4940 3.569701 AGCATCACACAACGATTTTTCCT 59.430 39.130 0.00 0.00 0.00 3.36
3866 4941 3.900941 AGCATCACACAACGATTTTTCC 58.099 40.909 0.00 0.00 0.00 3.13
3867 4942 4.148696 CCAAGCATCACACAACGATTTTTC 59.851 41.667 0.00 0.00 0.00 2.29
3868 4943 4.050553 CCAAGCATCACACAACGATTTTT 58.949 39.130 0.00 0.00 0.00 1.94
3869 4944 3.641648 CCAAGCATCACACAACGATTTT 58.358 40.909 0.00 0.00 0.00 1.82
3870 4945 2.607771 GCCAAGCATCACACAACGATTT 60.608 45.455 0.00 0.00 0.00 2.17
3871 4946 1.068333 GCCAAGCATCACACAACGATT 60.068 47.619 0.00 0.00 0.00 3.34
3872 4947 0.523072 GCCAAGCATCACACAACGAT 59.477 50.000 0.00 0.00 0.00 3.73
3873 4948 0.534877 AGCCAAGCATCACACAACGA 60.535 50.000 0.00 0.00 0.00 3.85
3874 4949 0.110056 GAGCCAAGCATCACACAACG 60.110 55.000 0.00 0.00 0.00 4.10
3875 4950 0.110056 CGAGCCAAGCATCACACAAC 60.110 55.000 0.00 0.00 0.00 3.32
3876 4951 1.855213 GCGAGCCAAGCATCACACAA 61.855 55.000 0.00 0.00 34.19 3.33
3877 4952 2.327343 GCGAGCCAAGCATCACACA 61.327 57.895 0.00 0.00 34.19 3.72
3878 4953 2.482374 GCGAGCCAAGCATCACAC 59.518 61.111 0.00 0.00 34.19 3.82
3879 4954 2.747460 GGCGAGCCAAGCATCACA 60.747 61.111 9.58 0.00 36.08 3.58
3880 4955 2.747460 TGGCGAGCCAAGCATCAC 60.747 61.111 15.24 0.00 44.12 3.06
3894 4969 1.014352 AAATGGTCGACGCTAATGGC 58.986 50.000 9.92 0.00 37.64 4.40
3895 4970 2.675844 TGAAAATGGTCGACGCTAATGG 59.324 45.455 9.92 0.00 0.00 3.16
3896 4971 4.334443 CTTGAAAATGGTCGACGCTAATG 58.666 43.478 9.92 0.00 0.00 1.90
3897 4972 3.374058 CCTTGAAAATGGTCGACGCTAAT 59.626 43.478 9.92 0.00 0.00 1.73
3898 4973 2.739913 CCTTGAAAATGGTCGACGCTAA 59.260 45.455 9.92 0.00 0.00 3.09
3899 4974 2.343101 CCTTGAAAATGGTCGACGCTA 58.657 47.619 9.92 0.00 0.00 4.26
3900 4975 1.156736 CCTTGAAAATGGTCGACGCT 58.843 50.000 9.92 0.00 0.00 5.07
3901 4976 0.454452 GCCTTGAAAATGGTCGACGC 60.454 55.000 9.92 3.20 0.00 5.19
3902 4977 0.871722 TGCCTTGAAAATGGTCGACG 59.128 50.000 9.92 0.00 0.00 5.12
3903 4978 1.606668 TGTGCCTTGAAAATGGTCGAC 59.393 47.619 7.13 7.13 0.00 4.20
3904 4979 1.879380 CTGTGCCTTGAAAATGGTCGA 59.121 47.619 0.00 0.00 0.00 4.20
3905 4980 1.879380 TCTGTGCCTTGAAAATGGTCG 59.121 47.619 0.00 0.00 0.00 4.79
3906 4981 2.352127 GCTCTGTGCCTTGAAAATGGTC 60.352 50.000 0.00 0.00 35.15 4.02
3907 4982 1.615392 GCTCTGTGCCTTGAAAATGGT 59.385 47.619 0.00 0.00 35.15 3.55
3908 4983 1.614903 TGCTCTGTGCCTTGAAAATGG 59.385 47.619 0.00 0.00 42.00 3.16
3909 4984 3.005050 TCTTGCTCTGTGCCTTGAAAATG 59.995 43.478 0.00 0.00 42.00 2.32
3910 4985 3.225104 TCTTGCTCTGTGCCTTGAAAAT 58.775 40.909 0.00 0.00 42.00 1.82
3911 4986 2.653726 TCTTGCTCTGTGCCTTGAAAA 58.346 42.857 0.00 0.00 42.00 2.29
3912 4987 2.346766 TCTTGCTCTGTGCCTTGAAA 57.653 45.000 0.00 0.00 42.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.