AutoCloner

Multiple sequence alignment - TraesCS4A01G473800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G473800	chr4A	100.000	3630	0	0	1	3630	733641387	733637758	0.000000e+00	6704.0
1	TraesCS4A01G473800	chr4A	80.767	1591	230	43	902	2438	733672341	733670773	0.000000e+00	1173.0
2	TraesCS4A01G473800	chr4A	81.137	1442	232	26	1005	2435	733741333	733742745	0.000000e+00	1120.0
3	TraesCS4A01G473800	chr4A	80.971	762	123	14	1691	2438	733761474	733762227	5.220000e-163	584.0
4	TraesCS4A01G473800	chr4A	79.828	813	105	23	915	1687	733759891	733760684	4.120000e-149	538.0
5	TraesCS4A01G473800	chr4A	84.818	494	53	13	2586	3067	733762369	733762852	9.120000e-131	477.0
6	TraesCS4A01G473800	chr4A	80.866	277	30	14	2500	2768	733670686	733670425	2.860000e-46	196.0
7	TraesCS4A01G473800	chr4A	93.023	43	3	0	2456	2498	733670770	733670728	3.030000e-06	63.9
8	TraesCS4A01G473800	chr4A	96.970	33	1	0	2500	2532	733762318	733762350	5.060000e-04	56.5
9	TraesCS4A01G473800	chr7A	94.146	2528	86	18	822	3319	7669113	7671608	0.000000e+00	3792.0
10	TraesCS4A01G473800	chr7A	85.916	2265	235	39	822	3056	7633964	7636174	0.000000e+00	2338.0
11	TraesCS4A01G473800	chr7A	80.154	1426	214	32	1044	2438	7628830	7630217	0.000000e+00	1002.0
12	TraesCS4A01G473800	chr7A	86.332	717	67	19	2507	3206	7630309	7631011	0.000000e+00	752.0
13	TraesCS4A01G473800	chr7A	90.307	423	28	7	3081	3494	7636172	7636590	3.190000e-150	542.0
14	TraesCS4A01G473800	chr7A	74.653	576	90	34	2496	3046	7636623	7637167	1.710000e-48	204.0
15	TraesCS4A01G473800	chr7A	83.673	147	15	7	3490	3628	7636614	7636759	2.940000e-26	130.0
16	TraesCS4A01G473800	chr7A	83.740	123	12	5	697	815	401562162	401562280	3.830000e-20	110.0
17	TraesCS4A01G473800	chr7A	80.916	131	18	4	3503	3627	7670787	7670916	2.980000e-16	97.1
18	TraesCS4A01G473800	chr7A	78.740	127	25	2	1361	1486	118314007	118314132	2.320000e-12	84.2
19	TraesCS4A01G473800	chr7D	85.826	2681	276	54	842	3492	6582044	6584650	0.000000e+00	2750.0
20	TraesCS4A01G473800	chr7D	80.978	1472	218	38	1005	2438	6490983	6492430	0.000000e+00	1110.0
21	TraesCS4A01G473800	chr7D	85.503	676	73	15	2507	3168	6492522	6493186	0.000000e+00	682.0
22	TraesCS4A01G473800	chr7D	76.190	567	89	28	2496	3046	6584686	6585222	1.290000e-64	257.0
23	TraesCS4A01G473800	chr7D	84.564	149	14	3	3490	3630	6584677	6584824	4.890000e-29	139.0
24	TraesCS4A01G473800	chr7D	81.102	127	19	5	1354	1477	75806765	75806641	2.980000e-16	97.1
25	TraesCS4A01G473800	chr5A	98.762	808	8	2	1	808	115675917	115675112	0.000000e+00	1435.0
26	TraesCS4A01G473800	chr5A	86.789	545	66	6	70	610	490151321	490151863	1.440000e-168	603.0
27	TraesCS4A01G473800	chr7B	97.691	823	11	5	1	821	6678217	6679033	0.000000e+00	1408.0
28	TraesCS4A01G473800	chr2B	95.567	812	19	4	1	812	232258489	232257695	0.000000e+00	1284.0
29	TraesCS4A01G473800	chr2B	87.075	588	57	10	7	591	699915812	699915241	0.000000e+00	647.0
30	TraesCS4A01G473800	chr1B	95.086	814	21	7	1	814	628793970	628794764	0.000000e+00	1264.0
31	TraesCS4A01G473800	chr1B	86.364	110	8	5	708	814	646746166	646746061	2.960000e-21	113.0
32	TraesCS4A01G473800	chr1B	80.952	126	21	2	695	819	637911207	637911330	2.980000e-16	97.1
33	TraesCS4A01G473800	chr1B	77.070	157	34	2	1333	1488	643032683	643032528	4.990000e-14	89.8
34	TraesCS4A01G473800	chr1A	88.121	564	56	9	130	684	515149775	515150336	0.000000e+00	660.0
35	TraesCS4A01G473800	chr1A	87.922	563	58	8	130	684	514893510	514894070	0.000000e+00	654.0
36	TraesCS4A01G473800	chr1A	89.216	102	8	3	709	810	272003746	272003648	1.370000e-24	124.0
37	TraesCS4A01G473800	chr1A	82.517	143	21	4	708	849	244564554	244564693	4.920000e-24	122.0
38	TraesCS4A01G473800	chr2A	87.382	531	56	10	70	593	720971769	720972295	1.870000e-167	599.0
39	TraesCS4A01G473800	chr2A	93.333	45	3	0	1091	1135	752551786	752551830	2.340000e-07	67.6
40	TraesCS4A01G473800	chr6D	87.855	387	44	3	225	610	300218493	300218109	5.530000e-123	451.0
41	TraesCS4A01G473800	chr6D	86.747	83	11	0	3548	3630	7564070	7563988	3.860000e-15	93.5
42	TraesCS4A01G473800	chr3B	90.141	284	26	2	70	351	458263990	458263707	5.730000e-98	368.0
43	TraesCS4A01G473800	chr2D	89.147	129	14	0	1073	1201	440617045	440616917	1.040000e-35	161.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G473800	chr4A	733637758	733641387	3629	True	6704.000000	6704	100.000000	1	3630	1	chr4A.!!$R1	3629
1	TraesCS4A01G473800	chr4A	733741333	733742745	1412	False	1120.000000	1120	81.137000	1005	2435	1	chr4A.!!$F1	1430
2	TraesCS4A01G473800	chr4A	733670425	733672341	1916	True	477.633333	1173	84.885333	902	2768	3	chr4A.!!$R2	1866
3	TraesCS4A01G473800	chr4A	733759891	733762852	2961	False	413.875000	584	85.646750	915	3067	4	chr4A.!!$F2	2152
4	TraesCS4A01G473800	chr7A	7669113	7671608	2495	False	1944.550000	3792	87.531000	822	3627	2	chr7A.!!$F4	2805
5	TraesCS4A01G473800	chr7A	7628830	7637167	8337	False	828.000000	2338	83.505833	822	3628	6	chr7A.!!$F3	2806
6	TraesCS4A01G473800	chr7D	6582044	6585222	3178	False	1048.666667	2750	82.193333	842	3630	3	chr7D.!!$F2	2788
7	TraesCS4A01G473800	chr7D	6490983	6493186	2203	False	896.000000	1110	83.240500	1005	3168	2	chr7D.!!$F1	2163
8	TraesCS4A01G473800	chr5A	115675112	115675917	805	True	1435.000000	1435	98.762000	1	808	1	chr5A.!!$R1	807
9	TraesCS4A01G473800	chr5A	490151321	490151863	542	False	603.000000	603	86.789000	70	610	1	chr5A.!!$F1	540
10	TraesCS4A01G473800	chr7B	6678217	6679033	816	False	1408.000000	1408	97.691000	1	821	1	chr7B.!!$F1	820
11	TraesCS4A01G473800	chr2B	232257695	232258489	794	True	1284.000000	1284	95.567000	1	812	1	chr2B.!!$R1	811
12	TraesCS4A01G473800	chr2B	699915241	699915812	571	True	647.000000	647	87.075000	7	591	1	chr2B.!!$R2	584
13	TraesCS4A01G473800	chr1B	628793970	628794764	794	False	1264.000000	1264	95.086000	1	814	1	chr1B.!!$F1	813
14	TraesCS4A01G473800	chr1A	515149775	515150336	561	False	660.000000	660	88.121000	130	684	1	chr1A.!!$F3	554
15	TraesCS4A01G473800	chr1A	514893510	514894070	560	False	654.000000	654	87.922000	130	684	1	chr1A.!!$F2	554
16	TraesCS4A01G473800	chr2A	720971769	720972295	526	False	599.000000	599	87.382000	70	593	1	chr2A.!!$F1	523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
717	728	1.325355	CTTATTAGGAGGACCGCGGA	58.675	55.0	35.90	6.79	41.83	5.54	F
2208	7404	0.231279	CCGTCGACGTTCCAAAACTG	59.769	55.0	33.49	12.62	37.74	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2555	7805	0.251916	TTACCCGCTGGATCTGTTGG	59.748	55.0	0.0	0.0	34.81	3.77	R
3319	8600	0.320160	ACGGGCGGTCAAGTTACTTC	60.320	55.0	0.0	0.0	0.00	3.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
185	187	1.336887	CGAGATGGTGGTTGAAGTCGT	60.337	52.381	0.00	0.00	0.00	4.34
285	289	2.856000	AGGTGCTCTGGCCAGGTT	60.856	61.111	32.23	9.10	37.74	3.50
286	290	2.116125	GGTGCTCTGGCCAGGTTT	59.884	61.111	32.23	0.00	37.74	3.27
717	728	1.325355	CTTATTAGGAGGACCGCGGA	58.675	55.000	35.90	6.79	41.83	5.54
942	5257	1.678101	GGGCAGAATTCCGGAAGAATG	59.322	52.381	23.47	19.57	44.75	2.67
950	5265	1.358152	TCCGGAAGAATGGTGAAGGT	58.642	50.000	0.00	0.00	0.00	3.50
1025	5366	1.901085	CTCCGGAACCTTCTCCCTG	59.099	63.158	5.23	0.00	31.03	4.45
1125	5467	4.521062	CGGGGAAGGAGCAGAGCG	62.521	72.222	0.00	0.00	0.00	5.03
1127	5469	2.439104	GGGGAAGGAGCAGAGCGAT	61.439	63.158	0.00	0.00	0.00	4.58
1313	5695	1.752683	TCGTAGAAGAGGAGGCAGAC	58.247	55.000	0.00	0.00	0.00	3.51
1687	6876	1.705337	CGTGTGCAATCCGATGACCC	61.705	60.000	0.00	0.00	0.00	4.46
1906	7095	2.436646	GGGGACACAGACGGCATG	60.437	66.667	0.00	0.00	0.00	4.06
2042	7235	1.753848	CTTGCCCGGATGGAATGCA	60.754	57.895	0.73	0.00	37.49	3.96
2048	7241	2.492773	CGGATGGAATGCAAGGGGC	61.493	63.158	0.00	0.00	45.13	5.80
2208	7404	0.231279	CCGTCGACGTTCCAAAACTG	59.769	55.000	33.49	12.62	37.74	3.16
2329	7531	6.317857	GTGATTTTCATTACTGACTGGAAGC	58.682	40.000	0.00	0.00	37.60	3.86
2387	7589	0.454600	CATCCCATGTGCACTTCTGC	59.545	55.000	19.41	0.00	44.52	4.26
2555	7805	2.222953	CCGGTAGACATTTTGTAAGCGC	60.223	50.000	0.00	0.00	36.58	5.92
2603	7859	5.123820	TGCTTAGTTGTATGAATGACTTGGC	59.876	40.000	0.00	0.00	0.00	4.52
2666	7922	3.064207	GGTCACTTGTTATCTGTTCGCA	58.936	45.455	0.00	0.00	0.00	5.10
2681	7937	0.390998	TCGCATCGGCTGAATGTGAA	60.391	50.000	14.76	4.04	38.10	3.18
2801	8062	3.512219	TGCTGAATATGGATGATGCCA	57.488	42.857	0.00	0.00	43.23	4.92
2857	8126	4.425520	GTCTCTTCTATGCCGCATATACC	58.574	47.826	13.46	0.00	0.00	2.73
2875	8144	3.721087	ACCAAGGGTAAGGAGATGTTG	57.279	47.619	0.00	0.00	32.11	3.33
2881	8150	2.618053	GGTAAGGAGATGTTGGTGTCG	58.382	52.381	0.00	0.00	0.00	4.35
2892	8162	4.555348	TGTTGGTGTCGTTTATGAAACC	57.445	40.909	4.60	4.60	45.12	3.27
2997	8274	4.400567	CAGGGGAGAGAACAAAATGATTCC	59.599	45.833	0.00	0.00	0.00	3.01
3015	8292	3.795623	TCCGCCTGTAGCTAAAACTAG	57.204	47.619	0.00	0.00	40.39	2.57
3032	8309	7.582667	AAAACTAGGCACTCTTTATGTTTGT	57.417	32.000	0.00	0.00	41.75	2.83
3061	8342	6.853720	TGTCACTAGTAGTGTGCTTCTAATC	58.146	40.000	25.83	8.59	46.03	1.75
3075	8356	7.867403	TGTGCTTCTAATCAATTTCCTGTTTTC	59.133	33.333	0.00	0.00	0.00	2.29
3078	8359	7.483059	GCTTCTAATCAATTTCCTGTTTTCGAG	59.517	37.037	0.00	0.00	0.00	4.04
3090	8371	5.646360	TCCTGTTTTCGAGTCTTTTTCTTGT	59.354	36.000	0.00	0.00	0.00	3.16
3114	8395	4.485163	GGGATTGAACTTTTGATTGACCG	58.515	43.478	0.00	0.00	0.00	4.79
3129	8410	3.564053	TGACCGGTTTTTCCTACTTGT	57.436	42.857	9.42	0.00	0.00	3.16
3152	8433	6.666113	TGTATCCTGACCATACTGTTGAACTA	59.334	38.462	0.00	0.00	0.00	2.24
3190	8471	4.948847	ACCAATCCTGTTTTTGAAGCTTC	58.051	39.130	19.89	19.89	0.00	3.86
3257	8538	1.063806	GTCAGCTACGAACTGTGCAG	58.936	55.000	0.00	0.00	36.50	4.41
3308	8589	2.243602	ATTGTTACCCGTGTGTCGTT	57.756	45.000	0.00	0.00	37.94	3.85
3319	8600	0.598419	TGTGTCGTTCTGCAGCTGAG	60.598	55.000	20.43	12.20	0.00	3.35
3360	8647	0.321564	TGCTGCATGACCCACTACAC	60.322	55.000	0.00	0.00	0.00	2.90
3361	8648	0.321564	GCTGCATGACCCACTACACA	60.322	55.000	0.00	0.00	0.00	3.72
3362	8649	1.679944	GCTGCATGACCCACTACACAT	60.680	52.381	0.00	0.00	0.00	3.21
3363	8650	2.011947	CTGCATGACCCACTACACATG	58.988	52.381	0.00	0.00	41.72	3.21
3372	8659	1.739466	CCACTACACATGCATGTCACC	59.261	52.381	29.23	0.00	39.39	4.02
3375	8662	2.302733	ACTACACATGCATGTCACCAGA	59.697	45.455	29.23	9.96	39.39	3.86
3392	8679	7.443272	TGTCACCAGATTGAGCTTATATTCATG	59.557	37.037	0.00	0.00	0.00	3.07
3396	8683	6.304882	CAGATTGAGCTTATATTCATGCACG	58.695	40.000	0.00	0.00	0.00	5.34
3433	8720	9.498176	ACGTGTGATAGGTTTAAACTTTATTCT	57.502	29.630	17.50	7.84	0.00	2.40
3471	8759	5.502089	TTGAATGCCCCATCAAATTTTCT	57.498	34.783	0.00	0.00	0.00	2.52
3475	8763	4.970860	TGCCCCATCAAATTTTCTTTCA	57.029	36.364	0.00	0.00	0.00	2.69
3518	8836	1.724582	GAGTGCAGCCGTTTTGTGGT	61.725	55.000	0.00	0.00	0.00	4.16
3532	8850	5.107298	CGTTTTGTGGTGTTGAACAATGTTT	60.107	36.000	0.00	0.00	36.26	2.83
3537	8855	4.926238	GTGGTGTTGAACAATGTTTGTCAA	59.074	37.500	0.00	0.00	44.59	3.18
3539	8857	4.926238	GGTGTTGAACAATGTTTGTCAACA	59.074	37.500	21.35	21.35	46.56	3.33
3544	8862	6.707440	TGAACAATGTTTGTCAACAGGTAT	57.293	33.333	0.00	0.00	46.25	2.73
3546	8864	7.870826	TGAACAATGTTTGTCAACAGGTATAG	58.129	34.615	0.00	0.00	46.25	1.31
3547	8865	7.717436	TGAACAATGTTTGTCAACAGGTATAGA	59.283	33.333	0.00	0.00	46.25	1.98
3558	8876	7.826744	TGTCAACAGGTATAGATTTTGTATGCA	59.173	33.333	0.00	0.00	0.00	3.96

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
185	187	0.835971	TCAGTACTGCTCTGCCCCAA	60.836	55.000	18.45	0.00	33.48	4.12
285	289	2.774234	CTCCTCCCCAATGCTCTTCTAA	59.226	50.000	0.00	0.00	0.00	2.10
286	290	2.023015	TCTCCTCCCCAATGCTCTTCTA	60.023	50.000	0.00	0.00	0.00	2.10
717	728	7.168905	AGTCCCTTCGTTTCTGAGAAATTAAT	58.831	34.615	11.20	0.00	0.00	1.40
942	5257	0.976073	TCGAGGGGATGACCTTCACC	60.976	60.000	0.00	0.00	45.29	4.02
950	5265	0.252057	TGTGTTCCTCGAGGGGATGA	60.252	55.000	30.80	8.82	35.07	2.92
1180	5522	0.811915	GCAGACCTGAGAAGCTACGA	59.188	55.000	0.47	0.00	0.00	3.43
1238	5604	4.265320	TCGATTCATTGATTCGAAGACACG	59.735	41.667	23.84	5.78	40.03	4.49
1324	5715	3.371063	GACGCTCACCACCTCCGA	61.371	66.667	0.00	0.00	0.00	4.55
1687	6876	2.896801	GCAGCACGGTCCACTGTTG	61.897	63.158	5.67	1.83	32.07	3.33
1760	6949	3.688185	GTCGAAAACCAGGAAGGGATAAC	59.312	47.826	0.00	0.00	43.89	1.89
1956	7148	4.961438	AGTTCCATGGAAAAGCAAATGT	57.039	36.364	28.64	2.70	35.75	2.71
2048	7241	1.243902	ACCATAACCAGGCGTTGTTG	58.756	50.000	6.16	0.00	35.79	3.33
2049	7242	1.883926	GAACCATAACCAGGCGTTGTT	59.116	47.619	1.30	1.30	35.79	2.83
2050	7243	1.530323	GAACCATAACCAGGCGTTGT	58.470	50.000	0.00	0.00	35.79	3.32
2329	7531	3.138205	GTCGTATGACAGACTCACCAG	57.862	52.381	10.30	0.00	44.82	4.00
2555	7805	0.251916	TTACCCGCTGGATCTGTTGG	59.748	55.000	0.00	0.00	34.81	3.77
2631	7887	9.905713	ATAACAAGTGACCACATTAATCAGTAT	57.094	29.630	2.78	0.00	0.00	2.12
2666	7922	3.411446	TGAAAGTTCACATTCAGCCGAT	58.589	40.909	0.00	0.00	31.08	4.18
2791	8052	4.496341	CGTTACAAAGACATGGCATCATCC	60.496	45.833	0.00	0.00	0.00	3.51
2801	8062	7.739498	AATTCTGTTACCGTTACAAAGACAT	57.261	32.000	0.00	0.00	0.00	3.06
2857	8126	3.244911	ACACCAACATCTCCTTACCCTTG	60.245	47.826	0.00	0.00	0.00	3.61
2875	8144	6.094325	TCCATATTGGTTTCATAAACGACACC	59.906	38.462	0.00	0.00	42.29	4.16
2881	8150	9.087424	GAAAAGCTCCATATTGGTTTCATAAAC	57.913	33.333	0.00	0.00	39.03	2.01
3015	8292	5.810074	ACAAACAACAAACATAAAGAGTGCC	59.190	36.000	0.00	0.00	0.00	5.01
3061	8342	7.702348	AGAAAAAGACTCGAAAACAGGAAATTG	59.298	33.333	0.00	0.00	0.00	2.32
3075	8356	2.846193	TCCCCACAAGAAAAAGACTCG	58.154	47.619	0.00	0.00	0.00	4.18
3078	8359	5.069119	AGTTCAATCCCCACAAGAAAAAGAC	59.931	40.000	0.00	0.00	0.00	3.01
3090	8371	4.283212	GGTCAATCAAAAGTTCAATCCCCA	59.717	41.667	0.00	0.00	0.00	4.96
3114	8395	5.646793	GGTCAGGATACAAGTAGGAAAAACC	59.353	44.000	0.00	0.00	41.41	3.27
3129	8410	6.895756	AGTAGTTCAACAGTATGGTCAGGATA	59.104	38.462	0.00	0.00	43.62	2.59
3152	8433	4.583073	GGATTGGTTTGACAACAACCTAGT	59.417	41.667	9.84	0.00	35.63	2.57
3190	8471	9.338291	CTACATCATTGTCAACAAAATCTGAAG	57.662	33.333	0.00	0.00	39.55	3.02
3308	8589	3.321968	TCAAGTTACTTCTCAGCTGCAGA	59.678	43.478	20.43	10.19	0.00	4.26
3319	8600	0.320160	ACGGGCGGTCAAGTTACTTC	60.320	55.000	0.00	0.00	0.00	3.01
3360	8647	2.223502	GCTCAATCTGGTGACATGCATG	60.224	50.000	25.09	25.09	41.51	4.06
3361	8648	2.022195	GCTCAATCTGGTGACATGCAT	58.978	47.619	0.00	0.00	41.51	3.96
3362	8649	1.003928	AGCTCAATCTGGTGACATGCA	59.996	47.619	0.00	0.00	41.51	3.96
3363	8650	1.747709	AGCTCAATCTGGTGACATGC	58.252	50.000	0.00	0.00	41.51	4.06
3372	8659	6.146673	TCGTGCATGAATATAAGCTCAATCTG	59.853	38.462	6.04	0.00	0.00	2.90
3375	8662	5.107337	CGTCGTGCATGAATATAAGCTCAAT	60.107	40.000	10.93	0.00	0.00	2.57
3392	8679	4.046998	CGTGTGACTGCGTCGTGC	62.047	66.667	0.00	0.00	46.70	5.34
3500	8818	1.752694	ACCACAAAACGGCTGCACT	60.753	52.632	0.50	0.00	0.00	4.40
3518	8836	5.167121	CCTGTTGACAAACATTGTTCAACA	58.833	37.500	23.84	23.84	46.56	3.33
3532	8850	7.826744	TGCATACAAAATCTATACCTGTTGACA	59.173	33.333	0.00	0.00	0.00	3.58
3537	8855	8.574251	TTGTTGCATACAAAATCTATACCTGT	57.426	30.769	10.67	0.00	43.58	4.00
3539	8857	7.467267	CGCTTGTTGCATACAAAATCTATACCT	60.467	37.037	13.10	0.00	45.69	3.08
3544	8862	5.871465	TCGCTTGTTGCATACAAAATCTA	57.129	34.783	13.10	0.09	45.69	1.98
3546	8864	5.572511	TGAATCGCTTGTTGCATACAAAATC	59.427	36.000	13.10	8.88	45.69	2.17
3547	8865	5.468592	TGAATCGCTTGTTGCATACAAAAT	58.531	33.333	13.10	6.87	45.69	1.82
3555	8873	2.245795	CGATTGAATCGCTTGTTGCA	57.754	45.000	15.04	0.00	46.55	4.08
3565	8883	5.237344	ACAGCTAAGCATTACCGATTGAATC	59.763	40.000	0.00	0.00	0.00	2.52
3568	8886	4.137116	ACAGCTAAGCATTACCGATTGA	57.863	40.909	0.00	0.00	0.00	2.57
3571	8889	5.468540	TCATACAGCTAAGCATTACCGAT	57.531	39.130	0.00	0.00	0.00	4.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.