Multiple sequence alignment - TraesCS4A01G473800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G473800 chr4A 100.000 3630 0 0 1 3630 733641387 733637758 0.000000e+00 6704.0
1 TraesCS4A01G473800 chr4A 80.767 1591 230 43 902 2438 733672341 733670773 0.000000e+00 1173.0
2 TraesCS4A01G473800 chr4A 81.137 1442 232 26 1005 2435 733741333 733742745 0.000000e+00 1120.0
3 TraesCS4A01G473800 chr4A 80.971 762 123 14 1691 2438 733761474 733762227 5.220000e-163 584.0
4 TraesCS4A01G473800 chr4A 79.828 813 105 23 915 1687 733759891 733760684 4.120000e-149 538.0
5 TraesCS4A01G473800 chr4A 84.818 494 53 13 2586 3067 733762369 733762852 9.120000e-131 477.0
6 TraesCS4A01G473800 chr4A 80.866 277 30 14 2500 2768 733670686 733670425 2.860000e-46 196.0
7 TraesCS4A01G473800 chr4A 93.023 43 3 0 2456 2498 733670770 733670728 3.030000e-06 63.9
8 TraesCS4A01G473800 chr4A 96.970 33 1 0 2500 2532 733762318 733762350 5.060000e-04 56.5
9 TraesCS4A01G473800 chr7A 94.146 2528 86 18 822 3319 7669113 7671608 0.000000e+00 3792.0
10 TraesCS4A01G473800 chr7A 85.916 2265 235 39 822 3056 7633964 7636174 0.000000e+00 2338.0
11 TraesCS4A01G473800 chr7A 80.154 1426 214 32 1044 2438 7628830 7630217 0.000000e+00 1002.0
12 TraesCS4A01G473800 chr7A 86.332 717 67 19 2507 3206 7630309 7631011 0.000000e+00 752.0
13 TraesCS4A01G473800 chr7A 90.307 423 28 7 3081 3494 7636172 7636590 3.190000e-150 542.0
14 TraesCS4A01G473800 chr7A 74.653 576 90 34 2496 3046 7636623 7637167 1.710000e-48 204.0
15 TraesCS4A01G473800 chr7A 83.673 147 15 7 3490 3628 7636614 7636759 2.940000e-26 130.0
16 TraesCS4A01G473800 chr7A 83.740 123 12 5 697 815 401562162 401562280 3.830000e-20 110.0
17 TraesCS4A01G473800 chr7A 80.916 131 18 4 3503 3627 7670787 7670916 2.980000e-16 97.1
18 TraesCS4A01G473800 chr7A 78.740 127 25 2 1361 1486 118314007 118314132 2.320000e-12 84.2
19 TraesCS4A01G473800 chr7D 85.826 2681 276 54 842 3492 6582044 6584650 0.000000e+00 2750.0
20 TraesCS4A01G473800 chr7D 80.978 1472 218 38 1005 2438 6490983 6492430 0.000000e+00 1110.0
21 TraesCS4A01G473800 chr7D 85.503 676 73 15 2507 3168 6492522 6493186 0.000000e+00 682.0
22 TraesCS4A01G473800 chr7D 76.190 567 89 28 2496 3046 6584686 6585222 1.290000e-64 257.0
23 TraesCS4A01G473800 chr7D 84.564 149 14 3 3490 3630 6584677 6584824 4.890000e-29 139.0
24 TraesCS4A01G473800 chr7D 81.102 127 19 5 1354 1477 75806765 75806641 2.980000e-16 97.1
25 TraesCS4A01G473800 chr5A 98.762 808 8 2 1 808 115675917 115675112 0.000000e+00 1435.0
26 TraesCS4A01G473800 chr5A 86.789 545 66 6 70 610 490151321 490151863 1.440000e-168 603.0
27 TraesCS4A01G473800 chr7B 97.691 823 11 5 1 821 6678217 6679033 0.000000e+00 1408.0
28 TraesCS4A01G473800 chr2B 95.567 812 19 4 1 812 232258489 232257695 0.000000e+00 1284.0
29 TraesCS4A01G473800 chr2B 87.075 588 57 10 7 591 699915812 699915241 0.000000e+00 647.0
30 TraesCS4A01G473800 chr1B 95.086 814 21 7 1 814 628793970 628794764 0.000000e+00 1264.0
31 TraesCS4A01G473800 chr1B 86.364 110 8 5 708 814 646746166 646746061 2.960000e-21 113.0
32 TraesCS4A01G473800 chr1B 80.952 126 21 2 695 819 637911207 637911330 2.980000e-16 97.1
33 TraesCS4A01G473800 chr1B 77.070 157 34 2 1333 1488 643032683 643032528 4.990000e-14 89.8
34 TraesCS4A01G473800 chr1A 88.121 564 56 9 130 684 515149775 515150336 0.000000e+00 660.0
35 TraesCS4A01G473800 chr1A 87.922 563 58 8 130 684 514893510 514894070 0.000000e+00 654.0
36 TraesCS4A01G473800 chr1A 89.216 102 8 3 709 810 272003746 272003648 1.370000e-24 124.0
37 TraesCS4A01G473800 chr1A 82.517 143 21 4 708 849 244564554 244564693 4.920000e-24 122.0
38 TraesCS4A01G473800 chr2A 87.382 531 56 10 70 593 720971769 720972295 1.870000e-167 599.0
39 TraesCS4A01G473800 chr2A 93.333 45 3 0 1091 1135 752551786 752551830 2.340000e-07 67.6
40 TraesCS4A01G473800 chr6D 87.855 387 44 3 225 610 300218493 300218109 5.530000e-123 451.0
41 TraesCS4A01G473800 chr6D 86.747 83 11 0 3548 3630 7564070 7563988 3.860000e-15 93.5
42 TraesCS4A01G473800 chr3B 90.141 284 26 2 70 351 458263990 458263707 5.730000e-98 368.0
43 TraesCS4A01G473800 chr2D 89.147 129 14 0 1073 1201 440617045 440616917 1.040000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G473800 chr4A 733637758 733641387 3629 True 6704.000000 6704 100.000000 1 3630 1 chr4A.!!$R1 3629
1 TraesCS4A01G473800 chr4A 733741333 733742745 1412 False 1120.000000 1120 81.137000 1005 2435 1 chr4A.!!$F1 1430
2 TraesCS4A01G473800 chr4A 733670425 733672341 1916 True 477.633333 1173 84.885333 902 2768 3 chr4A.!!$R2 1866
3 TraesCS4A01G473800 chr4A 733759891 733762852 2961 False 413.875000 584 85.646750 915 3067 4 chr4A.!!$F2 2152
4 TraesCS4A01G473800 chr7A 7669113 7671608 2495 False 1944.550000 3792 87.531000 822 3627 2 chr7A.!!$F4 2805
5 TraesCS4A01G473800 chr7A 7628830 7637167 8337 False 828.000000 2338 83.505833 822 3628 6 chr7A.!!$F3 2806
6 TraesCS4A01G473800 chr7D 6582044 6585222 3178 False 1048.666667 2750 82.193333 842 3630 3 chr7D.!!$F2 2788
7 TraesCS4A01G473800 chr7D 6490983 6493186 2203 False 896.000000 1110 83.240500 1005 3168 2 chr7D.!!$F1 2163
8 TraesCS4A01G473800 chr5A 115675112 115675917 805 True 1435.000000 1435 98.762000 1 808 1 chr5A.!!$R1 807
9 TraesCS4A01G473800 chr5A 490151321 490151863 542 False 603.000000 603 86.789000 70 610 1 chr5A.!!$F1 540
10 TraesCS4A01G473800 chr7B 6678217 6679033 816 False 1408.000000 1408 97.691000 1 821 1 chr7B.!!$F1 820
11 TraesCS4A01G473800 chr2B 232257695 232258489 794 True 1284.000000 1284 95.567000 1 812 1 chr2B.!!$R1 811
12 TraesCS4A01G473800 chr2B 699915241 699915812 571 True 647.000000 647 87.075000 7 591 1 chr2B.!!$R2 584
13 TraesCS4A01G473800 chr1B 628793970 628794764 794 False 1264.000000 1264 95.086000 1 814 1 chr1B.!!$F1 813
14 TraesCS4A01G473800 chr1A 515149775 515150336 561 False 660.000000 660 88.121000 130 684 1 chr1A.!!$F3 554
15 TraesCS4A01G473800 chr1A 514893510 514894070 560 False 654.000000 654 87.922000 130 684 1 chr1A.!!$F2 554
16 TraesCS4A01G473800 chr2A 720971769 720972295 526 False 599.000000 599 87.382000 70 593 1 chr2A.!!$F1 523


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 728 1.325355 CTTATTAGGAGGACCGCGGA 58.675 55.0 35.90 6.79 41.83 5.54 F
2208 7404 0.231279 CCGTCGACGTTCCAAAACTG 59.769 55.0 33.49 12.62 37.74 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2555 7805 0.251916 TTACCCGCTGGATCTGTTGG 59.748 55.0 0.0 0.0 34.81 3.77 R
3319 8600 0.320160 ACGGGCGGTCAAGTTACTTC 60.320 55.0 0.0 0.0 0.00 3.01 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 187 1.336887 CGAGATGGTGGTTGAAGTCGT 60.337 52.381 0.00 0.00 0.00 4.34
285 289 2.856000 AGGTGCTCTGGCCAGGTT 60.856 61.111 32.23 9.10 37.74 3.50
286 290 2.116125 GGTGCTCTGGCCAGGTTT 59.884 61.111 32.23 0.00 37.74 3.27
717 728 1.325355 CTTATTAGGAGGACCGCGGA 58.675 55.000 35.90 6.79 41.83 5.54
942 5257 1.678101 GGGCAGAATTCCGGAAGAATG 59.322 52.381 23.47 19.57 44.75 2.67
950 5265 1.358152 TCCGGAAGAATGGTGAAGGT 58.642 50.000 0.00 0.00 0.00 3.50
1025 5366 1.901085 CTCCGGAACCTTCTCCCTG 59.099 63.158 5.23 0.00 31.03 4.45
1125 5467 4.521062 CGGGGAAGGAGCAGAGCG 62.521 72.222 0.00 0.00 0.00 5.03
1127 5469 2.439104 GGGGAAGGAGCAGAGCGAT 61.439 63.158 0.00 0.00 0.00 4.58
1313 5695 1.752683 TCGTAGAAGAGGAGGCAGAC 58.247 55.000 0.00 0.00 0.00 3.51
1687 6876 1.705337 CGTGTGCAATCCGATGACCC 61.705 60.000 0.00 0.00 0.00 4.46
1906 7095 2.436646 GGGGACACAGACGGCATG 60.437 66.667 0.00 0.00 0.00 4.06
2042 7235 1.753848 CTTGCCCGGATGGAATGCA 60.754 57.895 0.73 0.00 37.49 3.96
2048 7241 2.492773 CGGATGGAATGCAAGGGGC 61.493 63.158 0.00 0.00 45.13 5.80
2208 7404 0.231279 CCGTCGACGTTCCAAAACTG 59.769 55.000 33.49 12.62 37.74 3.16
2329 7531 6.317857 GTGATTTTCATTACTGACTGGAAGC 58.682 40.000 0.00 0.00 37.60 3.86
2387 7589 0.454600 CATCCCATGTGCACTTCTGC 59.545 55.000 19.41 0.00 44.52 4.26
2555 7805 2.222953 CCGGTAGACATTTTGTAAGCGC 60.223 50.000 0.00 0.00 36.58 5.92
2603 7859 5.123820 TGCTTAGTTGTATGAATGACTTGGC 59.876 40.000 0.00 0.00 0.00 4.52
2666 7922 3.064207 GGTCACTTGTTATCTGTTCGCA 58.936 45.455 0.00 0.00 0.00 5.10
2681 7937 0.390998 TCGCATCGGCTGAATGTGAA 60.391 50.000 14.76 4.04 38.10 3.18
2801 8062 3.512219 TGCTGAATATGGATGATGCCA 57.488 42.857 0.00 0.00 43.23 4.92
2857 8126 4.425520 GTCTCTTCTATGCCGCATATACC 58.574 47.826 13.46 0.00 0.00 2.73
2875 8144 3.721087 ACCAAGGGTAAGGAGATGTTG 57.279 47.619 0.00 0.00 32.11 3.33
2881 8150 2.618053 GGTAAGGAGATGTTGGTGTCG 58.382 52.381 0.00 0.00 0.00 4.35
2892 8162 4.555348 TGTTGGTGTCGTTTATGAAACC 57.445 40.909 4.60 4.60 45.12 3.27
2997 8274 4.400567 CAGGGGAGAGAACAAAATGATTCC 59.599 45.833 0.00 0.00 0.00 3.01
3015 8292 3.795623 TCCGCCTGTAGCTAAAACTAG 57.204 47.619 0.00 0.00 40.39 2.57
3032 8309 7.582667 AAAACTAGGCACTCTTTATGTTTGT 57.417 32.000 0.00 0.00 41.75 2.83
3061 8342 6.853720 TGTCACTAGTAGTGTGCTTCTAATC 58.146 40.000 25.83 8.59 46.03 1.75
3075 8356 7.867403 TGTGCTTCTAATCAATTTCCTGTTTTC 59.133 33.333 0.00 0.00 0.00 2.29
3078 8359 7.483059 GCTTCTAATCAATTTCCTGTTTTCGAG 59.517 37.037 0.00 0.00 0.00 4.04
3090 8371 5.646360 TCCTGTTTTCGAGTCTTTTTCTTGT 59.354 36.000 0.00 0.00 0.00 3.16
3114 8395 4.485163 GGGATTGAACTTTTGATTGACCG 58.515 43.478 0.00 0.00 0.00 4.79
3129 8410 3.564053 TGACCGGTTTTTCCTACTTGT 57.436 42.857 9.42 0.00 0.00 3.16
3152 8433 6.666113 TGTATCCTGACCATACTGTTGAACTA 59.334 38.462 0.00 0.00 0.00 2.24
3190 8471 4.948847 ACCAATCCTGTTTTTGAAGCTTC 58.051 39.130 19.89 19.89 0.00 3.86
3257 8538 1.063806 GTCAGCTACGAACTGTGCAG 58.936 55.000 0.00 0.00 36.50 4.41
3308 8589 2.243602 ATTGTTACCCGTGTGTCGTT 57.756 45.000 0.00 0.00 37.94 3.85
3319 8600 0.598419 TGTGTCGTTCTGCAGCTGAG 60.598 55.000 20.43 12.20 0.00 3.35
3360 8647 0.321564 TGCTGCATGACCCACTACAC 60.322 55.000 0.00 0.00 0.00 2.90
3361 8648 0.321564 GCTGCATGACCCACTACACA 60.322 55.000 0.00 0.00 0.00 3.72
3362 8649 1.679944 GCTGCATGACCCACTACACAT 60.680 52.381 0.00 0.00 0.00 3.21
3363 8650 2.011947 CTGCATGACCCACTACACATG 58.988 52.381 0.00 0.00 41.72 3.21
3372 8659 1.739466 CCACTACACATGCATGTCACC 59.261 52.381 29.23 0.00 39.39 4.02
3375 8662 2.302733 ACTACACATGCATGTCACCAGA 59.697 45.455 29.23 9.96 39.39 3.86
3392 8679 7.443272 TGTCACCAGATTGAGCTTATATTCATG 59.557 37.037 0.00 0.00 0.00 3.07
3396 8683 6.304882 CAGATTGAGCTTATATTCATGCACG 58.695 40.000 0.00 0.00 0.00 5.34
3433 8720 9.498176 ACGTGTGATAGGTTTAAACTTTATTCT 57.502 29.630 17.50 7.84 0.00 2.40
3471 8759 5.502089 TTGAATGCCCCATCAAATTTTCT 57.498 34.783 0.00 0.00 0.00 2.52
3475 8763 4.970860 TGCCCCATCAAATTTTCTTTCA 57.029 36.364 0.00 0.00 0.00 2.69
3518 8836 1.724582 GAGTGCAGCCGTTTTGTGGT 61.725 55.000 0.00 0.00 0.00 4.16
3532 8850 5.107298 CGTTTTGTGGTGTTGAACAATGTTT 60.107 36.000 0.00 0.00 36.26 2.83
3537 8855 4.926238 GTGGTGTTGAACAATGTTTGTCAA 59.074 37.500 0.00 0.00 44.59 3.18
3539 8857 4.926238 GGTGTTGAACAATGTTTGTCAACA 59.074 37.500 21.35 21.35 46.56 3.33
3544 8862 6.707440 TGAACAATGTTTGTCAACAGGTAT 57.293 33.333 0.00 0.00 46.25 2.73
3546 8864 7.870826 TGAACAATGTTTGTCAACAGGTATAG 58.129 34.615 0.00 0.00 46.25 1.31
3547 8865 7.717436 TGAACAATGTTTGTCAACAGGTATAGA 59.283 33.333 0.00 0.00 46.25 1.98
3558 8876 7.826744 TGTCAACAGGTATAGATTTTGTATGCA 59.173 33.333 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
185 187 0.835971 TCAGTACTGCTCTGCCCCAA 60.836 55.000 18.45 0.00 33.48 4.12
285 289 2.774234 CTCCTCCCCAATGCTCTTCTAA 59.226 50.000 0.00 0.00 0.00 2.10
286 290 2.023015 TCTCCTCCCCAATGCTCTTCTA 60.023 50.000 0.00 0.00 0.00 2.10
717 728 7.168905 AGTCCCTTCGTTTCTGAGAAATTAAT 58.831 34.615 11.20 0.00 0.00 1.40
942 5257 0.976073 TCGAGGGGATGACCTTCACC 60.976 60.000 0.00 0.00 45.29 4.02
950 5265 0.252057 TGTGTTCCTCGAGGGGATGA 60.252 55.000 30.80 8.82 35.07 2.92
1180 5522 0.811915 GCAGACCTGAGAAGCTACGA 59.188 55.000 0.47 0.00 0.00 3.43
1238 5604 4.265320 TCGATTCATTGATTCGAAGACACG 59.735 41.667 23.84 5.78 40.03 4.49
1324 5715 3.371063 GACGCTCACCACCTCCGA 61.371 66.667 0.00 0.00 0.00 4.55
1687 6876 2.896801 GCAGCACGGTCCACTGTTG 61.897 63.158 5.67 1.83 32.07 3.33
1760 6949 3.688185 GTCGAAAACCAGGAAGGGATAAC 59.312 47.826 0.00 0.00 43.89 1.89
1956 7148 4.961438 AGTTCCATGGAAAAGCAAATGT 57.039 36.364 28.64 2.70 35.75 2.71
2048 7241 1.243902 ACCATAACCAGGCGTTGTTG 58.756 50.000 6.16 0.00 35.79 3.33
2049 7242 1.883926 GAACCATAACCAGGCGTTGTT 59.116 47.619 1.30 1.30 35.79 2.83
2050 7243 1.530323 GAACCATAACCAGGCGTTGT 58.470 50.000 0.00 0.00 35.79 3.32
2329 7531 3.138205 GTCGTATGACAGACTCACCAG 57.862 52.381 10.30 0.00 44.82 4.00
2555 7805 0.251916 TTACCCGCTGGATCTGTTGG 59.748 55.000 0.00 0.00 34.81 3.77
2631 7887 9.905713 ATAACAAGTGACCACATTAATCAGTAT 57.094 29.630 2.78 0.00 0.00 2.12
2666 7922 3.411446 TGAAAGTTCACATTCAGCCGAT 58.589 40.909 0.00 0.00 31.08 4.18
2791 8052 4.496341 CGTTACAAAGACATGGCATCATCC 60.496 45.833 0.00 0.00 0.00 3.51
2801 8062 7.739498 AATTCTGTTACCGTTACAAAGACAT 57.261 32.000 0.00 0.00 0.00 3.06
2857 8126 3.244911 ACACCAACATCTCCTTACCCTTG 60.245 47.826 0.00 0.00 0.00 3.61
2875 8144 6.094325 TCCATATTGGTTTCATAAACGACACC 59.906 38.462 0.00 0.00 42.29 4.16
2881 8150 9.087424 GAAAAGCTCCATATTGGTTTCATAAAC 57.913 33.333 0.00 0.00 39.03 2.01
3015 8292 5.810074 ACAAACAACAAACATAAAGAGTGCC 59.190 36.000 0.00 0.00 0.00 5.01
3061 8342 7.702348 AGAAAAAGACTCGAAAACAGGAAATTG 59.298 33.333 0.00 0.00 0.00 2.32
3075 8356 2.846193 TCCCCACAAGAAAAAGACTCG 58.154 47.619 0.00 0.00 0.00 4.18
3078 8359 5.069119 AGTTCAATCCCCACAAGAAAAAGAC 59.931 40.000 0.00 0.00 0.00 3.01
3090 8371 4.283212 GGTCAATCAAAAGTTCAATCCCCA 59.717 41.667 0.00 0.00 0.00 4.96
3114 8395 5.646793 GGTCAGGATACAAGTAGGAAAAACC 59.353 44.000 0.00 0.00 41.41 3.27
3129 8410 6.895756 AGTAGTTCAACAGTATGGTCAGGATA 59.104 38.462 0.00 0.00 43.62 2.59
3152 8433 4.583073 GGATTGGTTTGACAACAACCTAGT 59.417 41.667 9.84 0.00 35.63 2.57
3190 8471 9.338291 CTACATCATTGTCAACAAAATCTGAAG 57.662 33.333 0.00 0.00 39.55 3.02
3308 8589 3.321968 TCAAGTTACTTCTCAGCTGCAGA 59.678 43.478 20.43 10.19 0.00 4.26
3319 8600 0.320160 ACGGGCGGTCAAGTTACTTC 60.320 55.000 0.00 0.00 0.00 3.01
3360 8647 2.223502 GCTCAATCTGGTGACATGCATG 60.224 50.000 25.09 25.09 41.51 4.06
3361 8648 2.022195 GCTCAATCTGGTGACATGCAT 58.978 47.619 0.00 0.00 41.51 3.96
3362 8649 1.003928 AGCTCAATCTGGTGACATGCA 59.996 47.619 0.00 0.00 41.51 3.96
3363 8650 1.747709 AGCTCAATCTGGTGACATGC 58.252 50.000 0.00 0.00 41.51 4.06
3372 8659 6.146673 TCGTGCATGAATATAAGCTCAATCTG 59.853 38.462 6.04 0.00 0.00 2.90
3375 8662 5.107337 CGTCGTGCATGAATATAAGCTCAAT 60.107 40.000 10.93 0.00 0.00 2.57
3392 8679 4.046998 CGTGTGACTGCGTCGTGC 62.047 66.667 0.00 0.00 46.70 5.34
3500 8818 1.752694 ACCACAAAACGGCTGCACT 60.753 52.632 0.50 0.00 0.00 4.40
3518 8836 5.167121 CCTGTTGACAAACATTGTTCAACA 58.833 37.500 23.84 23.84 46.56 3.33
3532 8850 7.826744 TGCATACAAAATCTATACCTGTTGACA 59.173 33.333 0.00 0.00 0.00 3.58
3537 8855 8.574251 TTGTTGCATACAAAATCTATACCTGT 57.426 30.769 10.67 0.00 43.58 4.00
3539 8857 7.467267 CGCTTGTTGCATACAAAATCTATACCT 60.467 37.037 13.10 0.00 45.69 3.08
3544 8862 5.871465 TCGCTTGTTGCATACAAAATCTA 57.129 34.783 13.10 0.09 45.69 1.98
3546 8864 5.572511 TGAATCGCTTGTTGCATACAAAATC 59.427 36.000 13.10 8.88 45.69 2.17
3547 8865 5.468592 TGAATCGCTTGTTGCATACAAAAT 58.531 33.333 13.10 6.87 45.69 1.82
3555 8873 2.245795 CGATTGAATCGCTTGTTGCA 57.754 45.000 15.04 0.00 46.55 4.08
3565 8883 5.237344 ACAGCTAAGCATTACCGATTGAATC 59.763 40.000 0.00 0.00 0.00 2.52
3568 8886 4.137116 ACAGCTAAGCATTACCGATTGA 57.863 40.909 0.00 0.00 0.00 2.57
3571 8889 5.468540 TCATACAGCTAAGCATTACCGAT 57.531 39.130 0.00 0.00 0.00 4.18



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.