Multiple sequence alignment - TraesCS4A01G473500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G473500 chr4A 100.000 3635 0 0 1 3635 733561366 733557732 0.000000e+00 6713.0
1 TraesCS4A01G473500 chr4A 98.315 178 3 0 2925 3102 714185500 714185677 2.730000e-81 313.0
2 TraesCS4A01G473500 chr4A 96.629 178 5 1 2925 3101 546005169 546005346 9.870000e-76 294.0
3 TraesCS4A01G473500 chr7A 92.785 1871 105 10 1010 2866 7702278 7704132 0.000000e+00 2680.0
4 TraesCS4A01G473500 chr7D 93.617 1081 55 4 1641 2707 6753944 6755024 0.000000e+00 1602.0
5 TraesCS4A01G473500 chr7D 87.934 1210 102 20 462 1648 6749659 6750847 0.000000e+00 1386.0
6 TraesCS4A01G473500 chr7D 81.197 117 20 1 698 814 16262314 16262428 3.860000e-15 93.5
7 TraesCS4A01G473500 chr6D 96.205 448 17 0 3188 3635 235137179 235136732 0.000000e+00 734.0
8 TraesCS4A01G473500 chr6D 93.447 351 19 4 3288 3635 237066686 237067035 5.380000e-143 518.0
9 TraesCS4A01G473500 chr6D 75.196 895 187 22 1718 2599 9907476 9906604 1.220000e-104 390.0
10 TraesCS4A01G473500 chr6D 80.952 378 64 5 1121 1497 9908002 9907632 3.550000e-75 292.0
11 TraesCS4A01G473500 chr3B 94.690 452 21 2 3187 3635 598069179 598068728 0.000000e+00 699.0
12 TraesCS4A01G473500 chr7B 90.317 537 29 10 3102 3635 729404090 729404606 0.000000e+00 682.0
13 TraesCS4A01G473500 chr7B 93.987 449 22 4 3191 3635 459797939 459798386 0.000000e+00 675.0
14 TraesCS4A01G473500 chrUn 89.944 537 31 9 3102 3635 8467197 8466681 0.000000e+00 671.0
15 TraesCS4A01G473500 chr3D 92.593 351 21 4 3288 3635 523250792 523250444 1.950000e-137 499.0
16 TraesCS4A01G473500 chr1D 92.330 352 21 6 3288 3635 47853360 47853011 2.520000e-136 496.0
17 TraesCS4A01G473500 chr1D 97.500 80 2 0 3209 3288 204005936 204006015 1.760000e-28 137.0
18 TraesCS4A01G473500 chr1D 89.247 93 5 2 3170 3259 47853662 47853572 1.070000e-20 111.0
19 TraesCS4A01G473500 chr1A 87.812 320 33 5 3320 3635 504265613 504265296 1.590000e-98 370.0
20 TraesCS4A01G473500 chr5B 97.740 177 4 0 2925 3101 492053127 492053303 4.560000e-79 305.0
21 TraesCS4A01G473500 chr5B 96.648 179 6 0 2923 3101 609609498 609609676 7.630000e-77 298.0
22 TraesCS4A01G473500 chr1B 97.727 176 4 0 2925 3100 411258442 411258617 1.640000e-78 303.0
23 TraesCS4A01G473500 chr2B 97.714 175 2 2 2925 3099 57230196 57230024 2.120000e-77 300.0
24 TraesCS4A01G473500 chr2B 95.055 182 9 0 2925 3106 655295348 655295529 1.650000e-73 287.0
25 TraesCS4A01G473500 chr4B 97.126 174 5 0 2925 3098 482325323 482325496 9.870000e-76 294.0
26 TraesCS4A01G473500 chr2A 95.028 181 5 2 2923 3103 729123960 729123784 7.680000e-72 281.0
27 TraesCS4A01G473500 chr5A 88.235 68 6 1 3195 3260 508979505 508979438 3.010000e-11 80.5
28 TraesCS4A01G473500 chr3A 88.235 68 6 1 3195 3260 381027005 381026938 3.010000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G473500 chr4A 733557732 733561366 3634 True 6713.0 6713 100.0000 1 3635 1 chr4A.!!$R1 3634
1 TraesCS4A01G473500 chr7A 7702278 7704132 1854 False 2680.0 2680 92.7850 1010 2866 1 chr7A.!!$F1 1856
2 TraesCS4A01G473500 chr7D 6749659 6755024 5365 False 1494.0 1602 90.7755 462 2707 2 chr7D.!!$F2 2245
3 TraesCS4A01G473500 chr6D 9906604 9908002 1398 True 341.0 390 78.0740 1121 2599 2 chr6D.!!$R2 1478
4 TraesCS4A01G473500 chr7B 729404090 729404606 516 False 682.0 682 90.3170 3102 3635 1 chr7B.!!$F2 533
5 TraesCS4A01G473500 chrUn 8466681 8467197 516 True 671.0 671 89.9440 3102 3635 1 chrUn.!!$R1 533
6 TraesCS4A01G473500 chr1D 47853011 47853662 651 True 303.5 496 90.7885 3170 3635 2 chr1D.!!$R1 465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 153 0.451783 AAAATGGCCGATGACTTCGC 59.548 50.0 0.00 1.81 46.71 4.70 F
1267 1290 0.109412 CTACCGTCCTTGTGTCGACC 60.109 60.0 14.12 5.06 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 5003 0.036671 GGTAGGGGAACTTCACCACG 60.037 60.0 12.83 0.0 44.3 4.94 R
3096 6257 0.035056 CTTTGGACTAGGGGGCAGTG 60.035 60.0 0.00 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.587388 TCTCATGGGATTTTCTGAAATGC 57.413 39.130 3.31 0.00 41.33 3.56
23 24 5.266788 TCTCATGGGATTTTCTGAAATGCT 58.733 37.500 3.31 0.00 41.65 3.79
24 25 6.425735 TCTCATGGGATTTTCTGAAATGCTA 58.574 36.000 3.31 0.00 41.65 3.49
25 26 6.544931 TCTCATGGGATTTTCTGAAATGCTAG 59.455 38.462 3.31 0.00 41.65 3.42
26 27 6.425735 TCATGGGATTTTCTGAAATGCTAGA 58.574 36.000 3.31 0.00 41.65 2.43
27 28 7.064866 TCATGGGATTTTCTGAAATGCTAGAT 58.935 34.615 3.31 0.00 41.65 1.98
28 29 6.949352 TGGGATTTTCTGAAATGCTAGATC 57.051 37.500 3.31 3.09 41.65 2.75
29 30 5.829924 TGGGATTTTCTGAAATGCTAGATCC 59.170 40.000 15.91 15.91 41.65 3.36
30 31 6.067350 GGGATTTTCTGAAATGCTAGATCCT 58.933 40.000 20.36 0.00 41.65 3.24
31 32 6.548993 GGGATTTTCTGAAATGCTAGATCCTT 59.451 38.462 20.36 0.00 41.65 3.36
32 33 7.255416 GGGATTTTCTGAAATGCTAGATCCTTC 60.255 40.741 20.36 8.44 41.65 3.46
33 34 7.284034 GGATTTTCTGAAATGCTAGATCCTTCA 59.716 37.037 16.53 0.00 39.61 3.02
34 35 6.992063 TTTCTGAAATGCTAGATCCTTCAC 57.008 37.500 0.00 0.00 0.00 3.18
35 36 4.686972 TCTGAAATGCTAGATCCTTCACG 58.313 43.478 0.00 0.00 0.00 4.35
36 37 3.797039 TGAAATGCTAGATCCTTCACGG 58.203 45.455 0.00 0.00 0.00 4.94
37 38 3.197766 TGAAATGCTAGATCCTTCACGGT 59.802 43.478 0.00 0.00 0.00 4.83
38 39 4.404394 TGAAATGCTAGATCCTTCACGGTA 59.596 41.667 0.00 0.00 0.00 4.02
39 40 5.105106 TGAAATGCTAGATCCTTCACGGTAA 60.105 40.000 0.00 0.00 0.00 2.85
40 41 5.353394 AATGCTAGATCCTTCACGGTAAA 57.647 39.130 0.00 0.00 0.00 2.01
41 42 4.811969 TGCTAGATCCTTCACGGTAAAA 57.188 40.909 0.00 0.00 0.00 1.52
42 43 4.501071 TGCTAGATCCTTCACGGTAAAAC 58.499 43.478 0.00 0.00 0.00 2.43
43 44 3.869832 GCTAGATCCTTCACGGTAAAACC 59.130 47.826 0.00 0.00 34.05 3.27
44 45 4.382793 GCTAGATCCTTCACGGTAAAACCT 60.383 45.833 0.00 0.00 35.66 3.50
45 46 5.163478 GCTAGATCCTTCACGGTAAAACCTA 60.163 44.000 0.00 0.00 35.66 3.08
46 47 5.082251 AGATCCTTCACGGTAAAACCTAC 57.918 43.478 0.00 0.00 35.66 3.18
47 48 3.302365 TCCTTCACGGTAAAACCTACG 57.698 47.619 0.00 0.00 35.66 3.51
48 49 2.029110 TCCTTCACGGTAAAACCTACGG 60.029 50.000 0.00 0.00 35.66 4.02
49 50 2.029110 CCTTCACGGTAAAACCTACGGA 60.029 50.000 0.00 0.00 35.66 4.69
50 51 3.248266 CTTCACGGTAAAACCTACGGAG 58.752 50.000 0.00 0.00 35.66 4.63
51 52 2.238521 TCACGGTAAAACCTACGGAGT 58.761 47.619 0.00 0.00 37.03 3.85
52 53 2.228822 TCACGGTAAAACCTACGGAGTC 59.771 50.000 0.00 0.00 31.77 3.36
53 54 2.030007 CACGGTAAAACCTACGGAGTCA 60.030 50.000 0.00 0.00 31.77 3.41
54 55 2.627699 ACGGTAAAACCTACGGAGTCAA 59.372 45.455 0.00 0.00 31.77 3.18
55 56 3.069443 ACGGTAAAACCTACGGAGTCAAA 59.931 43.478 0.00 0.00 31.77 2.69
56 57 3.429881 CGGTAAAACCTACGGAGTCAAAC 59.570 47.826 0.00 0.00 31.77 2.93
57 58 4.635223 GGTAAAACCTACGGAGTCAAACT 58.365 43.478 0.00 0.00 43.93 2.66
58 59 5.059161 GGTAAAACCTACGGAGTCAAACTT 58.941 41.667 0.00 0.00 43.93 2.66
59 60 5.528690 GGTAAAACCTACGGAGTCAAACTTT 59.471 40.000 0.00 0.00 43.93 2.66
60 61 6.705825 GGTAAAACCTACGGAGTCAAACTTTA 59.294 38.462 0.00 0.00 43.93 1.85
61 62 7.226523 GGTAAAACCTACGGAGTCAAACTTTAA 59.773 37.037 0.00 0.00 43.93 1.52
62 63 7.812690 AAAACCTACGGAGTCAAACTTTAAT 57.187 32.000 0.00 0.00 43.93 1.40
63 64 7.812690 AAACCTACGGAGTCAAACTTTAATT 57.187 32.000 0.00 0.00 43.93 1.40
64 65 8.907222 AAACCTACGGAGTCAAACTTTAATTA 57.093 30.769 0.00 0.00 43.93 1.40
65 66 9.511272 AAACCTACGGAGTCAAACTTTAATTAT 57.489 29.630 0.00 0.00 43.93 1.28
66 67 8.488651 ACCTACGGAGTCAAACTTTAATTATG 57.511 34.615 0.00 0.00 43.93 1.90
67 68 8.098912 ACCTACGGAGTCAAACTTTAATTATGT 58.901 33.333 0.00 0.00 43.93 2.29
68 69 9.590451 CCTACGGAGTCAAACTTTAATTATGTA 57.410 33.333 0.00 0.00 43.93 2.29
71 72 9.715121 ACGGAGTCAAACTTTAATTATGTAAGA 57.285 29.630 3.02 0.00 29.74 2.10
82 83 9.755064 CTTTAATTATGTAAGAATTATCGGCGG 57.245 33.333 7.21 0.00 30.78 6.13
83 84 8.836268 TTAATTATGTAAGAATTATCGGCGGT 57.164 30.769 7.21 0.65 30.78 5.68
84 85 6.721571 ATTATGTAAGAATTATCGGCGGTG 57.278 37.500 7.21 0.00 30.46 4.94
85 86 3.804786 TGTAAGAATTATCGGCGGTGA 57.195 42.857 7.21 0.00 30.46 4.02
86 87 4.126208 TGTAAGAATTATCGGCGGTGAA 57.874 40.909 7.21 0.00 30.46 3.18
87 88 4.505808 TGTAAGAATTATCGGCGGTGAAA 58.494 39.130 7.21 0.00 30.46 2.69
88 89 5.120399 TGTAAGAATTATCGGCGGTGAAAT 58.880 37.500 7.21 0.00 30.46 2.17
89 90 4.552166 AAGAATTATCGGCGGTGAAATG 57.448 40.909 7.21 0.00 0.00 2.32
90 91 3.541632 AGAATTATCGGCGGTGAAATGT 58.458 40.909 7.21 0.00 0.00 2.71
91 92 3.945285 AGAATTATCGGCGGTGAAATGTT 59.055 39.130 7.21 0.00 0.00 2.71
92 93 3.691049 ATTATCGGCGGTGAAATGTTG 57.309 42.857 7.21 0.00 0.00 3.33
93 94 2.102070 TATCGGCGGTGAAATGTTGT 57.898 45.000 7.21 0.00 0.00 3.32
94 95 2.102070 ATCGGCGGTGAAATGTTGTA 57.898 45.000 7.21 0.00 0.00 2.41
95 96 1.149987 TCGGCGGTGAAATGTTGTAC 58.850 50.000 7.21 0.00 0.00 2.90
96 97 0.869068 CGGCGGTGAAATGTTGTACA 59.131 50.000 0.00 0.00 0.00 2.90
97 98 1.136085 CGGCGGTGAAATGTTGTACAG 60.136 52.381 0.00 0.00 0.00 2.74
98 99 2.147958 GGCGGTGAAATGTTGTACAGA 58.852 47.619 0.00 0.00 0.00 3.41
99 100 2.550606 GGCGGTGAAATGTTGTACAGAA 59.449 45.455 0.00 0.00 0.00 3.02
100 101 3.190535 GGCGGTGAAATGTTGTACAGAAT 59.809 43.478 0.00 0.00 0.00 2.40
101 102 4.320935 GGCGGTGAAATGTTGTACAGAATT 60.321 41.667 0.00 0.00 0.00 2.17
102 103 5.219633 GCGGTGAAATGTTGTACAGAATTT 58.780 37.500 14.35 14.35 0.00 1.82
103 104 6.375377 GCGGTGAAATGTTGTACAGAATTTA 58.625 36.000 14.40 5.01 0.00 1.40
104 105 6.858993 GCGGTGAAATGTTGTACAGAATTTAA 59.141 34.615 14.40 7.65 0.00 1.52
105 106 7.060633 GCGGTGAAATGTTGTACAGAATTTAAG 59.939 37.037 14.40 9.33 0.00 1.85
106 107 8.073768 CGGTGAAATGTTGTACAGAATTTAAGT 58.926 33.333 14.40 0.00 0.00 2.24
107 108 9.744468 GGTGAAATGTTGTACAGAATTTAAGTT 57.256 29.630 14.40 0.00 0.00 2.66
130 131 8.696410 GTTCTTAAGTATCAGAGAACTCCTTG 57.304 38.462 1.63 0.00 42.78 3.61
131 132 8.308207 GTTCTTAAGTATCAGAGAACTCCTTGT 58.692 37.037 1.63 0.00 42.78 3.16
132 133 8.057536 TCTTAAGTATCAGAGAACTCCTTGTC 57.942 38.462 1.63 0.00 0.00 3.18
133 134 7.670140 TCTTAAGTATCAGAGAACTCCTTGTCA 59.330 37.037 1.63 0.00 0.00 3.58
134 135 6.672266 AAGTATCAGAGAACTCCTTGTCAA 57.328 37.500 0.00 0.00 0.00 3.18
135 136 6.672266 AGTATCAGAGAACTCCTTGTCAAA 57.328 37.500 0.00 0.00 0.00 2.69
136 137 7.067496 AGTATCAGAGAACTCCTTGTCAAAA 57.933 36.000 0.00 0.00 0.00 2.44
137 138 7.684529 AGTATCAGAGAACTCCTTGTCAAAAT 58.315 34.615 0.00 0.00 0.00 1.82
138 139 6.814506 ATCAGAGAACTCCTTGTCAAAATG 57.185 37.500 0.00 0.00 0.00 2.32
139 140 5.065914 TCAGAGAACTCCTTGTCAAAATGG 58.934 41.667 0.00 0.00 0.00 3.16
140 141 3.823304 AGAGAACTCCTTGTCAAAATGGC 59.177 43.478 0.00 0.00 0.00 4.40
141 142 2.893489 AGAACTCCTTGTCAAAATGGCC 59.107 45.455 0.00 0.00 0.00 5.36
142 143 1.247567 ACTCCTTGTCAAAATGGCCG 58.752 50.000 0.00 0.00 0.00 6.13
143 144 1.202879 ACTCCTTGTCAAAATGGCCGA 60.203 47.619 0.00 0.00 0.00 5.54
144 145 2.094675 CTCCTTGTCAAAATGGCCGAT 58.905 47.619 0.00 0.00 0.00 4.18
145 146 1.818060 TCCTTGTCAAAATGGCCGATG 59.182 47.619 0.00 0.00 0.00 3.84
146 147 1.818060 CCTTGTCAAAATGGCCGATGA 59.182 47.619 0.00 0.00 0.00 2.92
147 148 2.415893 CCTTGTCAAAATGGCCGATGAC 60.416 50.000 17.99 17.99 41.90 3.06
148 149 2.198827 TGTCAAAATGGCCGATGACT 57.801 45.000 22.48 0.00 42.03 3.41
149 150 2.513753 TGTCAAAATGGCCGATGACTT 58.486 42.857 22.48 0.40 42.03 3.01
150 151 2.487762 TGTCAAAATGGCCGATGACTTC 59.512 45.455 22.48 5.70 42.03 3.01
152 153 0.451783 AAAATGGCCGATGACTTCGC 59.548 50.000 0.00 1.81 46.71 4.70
153 154 1.376609 AAATGGCCGATGACTTCGCC 61.377 55.000 0.00 13.54 46.71 5.54
154 155 3.757248 ATGGCCGATGACTTCGCCC 62.757 63.158 16.07 11.23 45.43 6.13
157 158 4.812476 CCGATGACTTCGCCCGCA 62.812 66.667 5.26 0.00 46.71 5.69
158 159 2.586079 CGATGACTTCGCCCGCAT 60.586 61.111 0.00 0.00 41.69 4.73
159 160 2.874694 CGATGACTTCGCCCGCATG 61.875 63.158 0.00 0.00 41.69 4.06
160 161 3.173390 GATGACTTCGCCCGCATGC 62.173 63.158 7.91 7.91 0.00 4.06
168 169 4.179579 GCCCGCATGCCGAAGAAC 62.180 66.667 13.15 0.00 40.02 3.01
169 170 3.508840 CCCGCATGCCGAAGAACC 61.509 66.667 13.15 0.00 40.02 3.62
170 171 2.436646 CCGCATGCCGAAGAACCT 60.437 61.111 13.15 0.00 40.02 3.50
171 172 2.753966 CCGCATGCCGAAGAACCTG 61.754 63.158 13.15 0.00 40.02 4.00
172 173 2.034879 CGCATGCCGAAGAACCTGT 61.035 57.895 13.15 0.00 40.02 4.00
173 174 1.796796 GCATGCCGAAGAACCTGTC 59.203 57.895 6.36 0.00 0.00 3.51
174 175 0.674895 GCATGCCGAAGAACCTGTCT 60.675 55.000 6.36 0.00 38.69 3.41
184 185 2.856222 AGAACCTGTCTTGCTCTTTGG 58.144 47.619 0.00 0.00 29.66 3.28
185 186 1.882623 GAACCTGTCTTGCTCTTTGGG 59.117 52.381 0.00 0.00 0.00 4.12
186 187 1.140312 ACCTGTCTTGCTCTTTGGGA 58.860 50.000 0.00 0.00 0.00 4.37
187 188 1.072965 ACCTGTCTTGCTCTTTGGGAG 59.927 52.381 0.00 0.00 44.49 4.30
205 206 1.064783 GCTTCTTTAGCGGCATGGC 59.935 57.895 9.69 9.69 40.71 4.40
206 207 1.353103 CTTCTTTAGCGGCATGGCG 59.647 57.895 34.70 34.70 38.18 5.69
207 208 2.051804 CTTCTTTAGCGGCATGGCGG 62.052 60.000 37.92 23.25 38.18 6.13
247 248 4.250305 GGTGGTCGGTGCAGTGGT 62.250 66.667 0.00 0.00 0.00 4.16
248 249 2.972505 GTGGTCGGTGCAGTGGTG 60.973 66.667 0.00 0.00 0.00 4.17
249 250 3.475494 TGGTCGGTGCAGTGGTGT 61.475 61.111 0.00 0.00 0.00 4.16
250 251 2.972505 GGTCGGTGCAGTGGTGTG 60.973 66.667 0.00 0.00 0.00 3.82
251 252 2.972505 GTCGGTGCAGTGGTGTGG 60.973 66.667 0.00 0.00 0.00 4.17
252 253 4.248842 TCGGTGCAGTGGTGTGGG 62.249 66.667 0.00 0.00 0.00 4.61
253 254 4.562425 CGGTGCAGTGGTGTGGGT 62.562 66.667 0.00 0.00 0.00 4.51
254 255 2.594592 GGTGCAGTGGTGTGGGTC 60.595 66.667 0.00 0.00 0.00 4.46
255 256 2.510906 GTGCAGTGGTGTGGGTCT 59.489 61.111 0.00 0.00 0.00 3.85
256 257 1.893808 GTGCAGTGGTGTGGGTCTG 60.894 63.158 0.00 0.00 0.00 3.51
257 258 2.980233 GCAGTGGTGTGGGTCTGC 60.980 66.667 0.00 0.00 44.50 4.26
258 259 2.831770 CAGTGGTGTGGGTCTGCT 59.168 61.111 0.00 0.00 0.00 4.24
259 260 1.598962 CAGTGGTGTGGGTCTGCTG 60.599 63.158 0.00 0.00 0.00 4.41
260 261 2.072487 AGTGGTGTGGGTCTGCTGT 61.072 57.895 0.00 0.00 0.00 4.40
261 262 1.893808 GTGGTGTGGGTCTGCTGTG 60.894 63.158 0.00 0.00 0.00 3.66
262 263 2.281761 GGTGTGGGTCTGCTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
263 264 2.510906 GTGTGGGTCTGCTGTGGT 59.489 61.111 0.00 0.00 0.00 4.16
264 265 1.893808 GTGTGGGTCTGCTGTGGTG 60.894 63.158 0.00 0.00 0.00 4.17
265 266 2.281761 GTGGGTCTGCTGTGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
266 267 2.772191 TGGGTCTGCTGTGGTGGT 60.772 61.111 0.00 0.00 0.00 4.16
267 268 2.281761 GGGTCTGCTGTGGTGGTG 60.282 66.667 0.00 0.00 0.00 4.17
268 269 2.510906 GGTCTGCTGTGGTGGTGT 59.489 61.111 0.00 0.00 0.00 4.16
269 270 1.893808 GGTCTGCTGTGGTGGTGTG 60.894 63.158 0.00 0.00 0.00 3.82
270 271 1.893808 GTCTGCTGTGGTGGTGTGG 60.894 63.158 0.00 0.00 0.00 4.17
271 272 2.595463 CTGCTGTGGTGGTGTGGG 60.595 66.667 0.00 0.00 0.00 4.61
272 273 4.202574 TGCTGTGGTGGTGTGGGG 62.203 66.667 0.00 0.00 0.00 4.96
313 314 4.814294 GGTGGTACGCGGCAGGAG 62.814 72.222 12.47 0.00 41.51 3.69
314 315 4.814294 GTGGTACGCGGCAGGAGG 62.814 72.222 12.47 0.00 0.00 4.30
325 326 4.039092 CAGGAGGGGCTGTGGGTG 62.039 72.222 0.00 0.00 0.00 4.61
347 348 4.778415 CGGTCGAGGCGGTCAGTG 62.778 72.222 0.00 0.00 0.00 3.66
352 353 4.803426 GAGGCGGTCAGTGCGGAG 62.803 72.222 0.00 0.00 0.00 4.63
356 357 4.436998 CGGTCAGTGCGGAGGTCC 62.437 72.222 0.00 0.00 0.00 4.46
357 358 3.311110 GGTCAGTGCGGAGGTCCA 61.311 66.667 0.00 0.00 35.14 4.02
358 359 2.741092 GTCAGTGCGGAGGTCCAA 59.259 61.111 0.00 0.00 35.14 3.53
359 360 1.296715 GTCAGTGCGGAGGTCCAAT 59.703 57.895 0.00 0.00 35.14 3.16
360 361 0.741221 GTCAGTGCGGAGGTCCAATC 60.741 60.000 0.00 0.00 35.14 2.67
361 362 1.811266 CAGTGCGGAGGTCCAATCG 60.811 63.158 0.00 0.00 35.14 3.34
362 363 1.982395 AGTGCGGAGGTCCAATCGA 60.982 57.895 0.00 0.00 35.14 3.59
363 364 1.519455 GTGCGGAGGTCCAATCGAG 60.519 63.158 0.00 0.00 35.14 4.04
364 365 2.586357 GCGGAGGTCCAATCGAGC 60.586 66.667 0.00 0.00 39.41 5.03
365 366 2.278857 CGGAGGTCCAATCGAGCG 60.279 66.667 0.00 0.00 44.07 5.03
366 367 2.107141 GGAGGTCCAATCGAGCGG 59.893 66.667 0.00 0.00 44.07 5.52
367 368 2.722201 GGAGGTCCAATCGAGCGGT 61.722 63.158 3.04 0.00 44.07 5.68
368 369 1.519455 GAGGTCCAATCGAGCGGTG 60.519 63.158 0.00 0.00 44.07 4.94
369 370 2.511600 GGTCCAATCGAGCGGTGG 60.512 66.667 0.00 0.00 0.00 4.61
370 371 3.195698 GTCCAATCGAGCGGTGGC 61.196 66.667 0.00 2.26 40.37 5.01
371 372 3.700970 TCCAATCGAGCGGTGGCA 61.701 61.111 0.00 0.00 43.41 4.92
372 373 3.197790 CCAATCGAGCGGTGGCAG 61.198 66.667 0.00 0.00 43.41 4.85
373 374 2.434884 CAATCGAGCGGTGGCAGT 60.435 61.111 0.00 0.00 43.41 4.40
374 375 2.434884 AATCGAGCGGTGGCAGTG 60.435 61.111 0.00 0.00 43.41 3.66
409 410 2.671619 CGGTTGCGGTGGTGGAAT 60.672 61.111 0.00 0.00 0.00 3.01
410 411 2.686816 CGGTTGCGGTGGTGGAATC 61.687 63.158 0.00 0.00 0.00 2.52
411 412 2.686816 GGTTGCGGTGGTGGAATCG 61.687 63.158 0.00 0.00 0.00 3.34
412 413 1.669760 GTTGCGGTGGTGGAATCGA 60.670 57.895 0.00 0.00 0.00 3.59
413 414 1.375396 TTGCGGTGGTGGAATCGAG 60.375 57.895 0.00 0.00 0.00 4.04
414 415 3.195698 GCGGTGGTGGAATCGAGC 61.196 66.667 0.00 0.00 0.00 5.03
415 416 2.885644 CGGTGGTGGAATCGAGCG 60.886 66.667 0.00 0.00 0.00 5.03
416 417 2.577059 GGTGGTGGAATCGAGCGA 59.423 61.111 0.00 0.00 0.00 4.93
417 418 1.810030 GGTGGTGGAATCGAGCGAC 60.810 63.158 0.00 0.00 0.00 5.19
418 419 2.158959 GTGGTGGAATCGAGCGACG 61.159 63.158 0.00 0.00 44.09 5.12
431 432 3.155424 CGACGACAGCGCAATCAA 58.845 55.556 11.47 0.00 42.48 2.57
432 433 1.057822 CGACGACAGCGCAATCAAG 59.942 57.895 11.47 0.00 42.48 3.02
433 434 1.225854 GACGACAGCGCAATCAAGC 60.226 57.895 11.47 0.00 42.48 4.01
452 453 1.134694 GGCAACGGTGAAATCGAGC 59.865 57.895 3.55 0.00 0.00 5.03
453 454 1.225745 GCAACGGTGAAATCGAGCG 60.226 57.895 3.55 0.00 40.12 5.03
454 455 1.419922 CAACGGTGAAATCGAGCGG 59.580 57.895 0.00 0.00 38.62 5.52
455 456 2.388232 AACGGTGAAATCGAGCGGC 61.388 57.895 0.00 0.00 38.62 6.53
456 457 3.913573 CGGTGAAATCGAGCGGCG 61.914 66.667 0.51 0.51 42.69 6.46
457 458 3.564027 GGTGAAATCGAGCGGCGG 61.564 66.667 9.78 0.00 41.33 6.13
458 459 4.223964 GTGAAATCGAGCGGCGGC 62.224 66.667 9.78 8.43 41.33 6.53
487 488 0.825840 CCCAATTCGTTGTGTGGGGT 60.826 55.000 0.00 0.00 46.04 4.95
508 509 3.557824 GGCCAACGATCGAAACGT 58.442 55.556 24.34 13.65 45.89 3.99
510 511 1.131826 GCCAACGATCGAAACGTGG 59.868 57.895 24.34 19.30 43.16 4.94
511 512 1.131826 CCAACGATCGAAACGTGGC 59.868 57.895 24.34 0.00 43.16 5.01
513 514 3.007070 AACGATCGAAACGTGGCGC 62.007 57.895 24.34 0.00 43.16 6.53
516 517 1.423845 GATCGAAACGTGGCGCAAT 59.576 52.632 10.83 0.00 0.00 3.56
517 518 0.857311 GATCGAAACGTGGCGCAATG 60.857 55.000 10.83 5.93 0.00 2.82
520 521 2.909965 AAACGTGGCGCAATGGGT 60.910 55.556 10.83 0.00 0.00 4.51
546 547 2.268920 TGCTGGAGGGCACGAATC 59.731 61.111 0.00 0.00 37.29 2.52
636 639 0.548510 GAGAAGATGGGTGGGGAAGG 59.451 60.000 0.00 0.00 0.00 3.46
661 664 1.541670 GGAACAGTAGTTGGCGGTTGA 60.542 52.381 0.00 0.00 38.30 3.18
662 665 2.423577 GAACAGTAGTTGGCGGTTGAT 58.576 47.619 0.00 0.00 38.30 2.57
674 677 3.422303 GTTGATGCGCGACTGCCA 61.422 61.111 12.10 0.00 38.08 4.92
686 689 3.426159 CGCGACTGCCATTTTTACATCTT 60.426 43.478 0.00 0.00 38.08 2.40
688 691 4.379394 GCGACTGCCATTTTTACATCTTCA 60.379 41.667 0.00 0.00 33.98 3.02
695 698 4.155826 CCATTTTTACATCTTCAGTCGGCA 59.844 41.667 0.00 0.00 0.00 5.69
709 712 2.821969 AGTCGGCAGAGATGCAAATTTT 59.178 40.909 2.29 0.00 36.33 1.82
715 718 3.983344 GCAGAGATGCAAATTTTCAACGT 59.017 39.130 0.00 0.00 34.41 3.99
716 719 4.143473 GCAGAGATGCAAATTTTCAACGTG 60.143 41.667 0.00 0.00 34.41 4.49
735 738 4.391830 ACGTGAGGTGCTGTATTTTACATG 59.608 41.667 0.00 0.00 38.15 3.21
740 743 3.064820 GGTGCTGTATTTTACATGTCCGG 59.935 47.826 0.00 0.00 38.15 5.14
741 744 3.064820 GTGCTGTATTTTACATGTCCGGG 59.935 47.826 0.00 0.00 38.15 5.73
783 786 9.788889 ATCTTTTGCATCTACATCATCTATTGA 57.211 29.630 0.00 0.00 39.12 2.57
791 794 6.385443 TCTACATCATCTATTGAAGAGGGGT 58.615 40.000 0.00 0.00 37.74 4.95
795 798 6.604795 ACATCATCTATTGAAGAGGGGTTTTG 59.395 38.462 0.00 0.00 37.74 2.44
841 844 6.971602 ACTAATACCAGACATCGACATAGTG 58.028 40.000 0.00 0.00 0.00 2.74
843 846 3.784701 ACCAGACATCGACATAGTGTC 57.215 47.619 7.82 7.82 43.65 3.67
861 884 2.499693 TGTCATGATCGCTGTAGGGAAA 59.500 45.455 0.00 0.00 40.44 3.13
862 885 3.126831 GTCATGATCGCTGTAGGGAAAG 58.873 50.000 0.00 0.00 40.44 2.62
866 889 4.280436 TGATCGCTGTAGGGAAAGAAAA 57.720 40.909 2.66 0.00 40.44 2.29
1045 1068 2.269520 ATTGCTGCTCGGTGCCCATA 62.270 55.000 0.00 0.00 42.00 2.74
1084 1107 4.957684 AGAAGAAAGAAAGAGAACGGGA 57.042 40.909 0.00 0.00 0.00 5.14
1267 1290 0.109412 CTACCGTCCTTGTGTCGACC 60.109 60.000 14.12 5.06 0.00 4.79
1310 1333 3.917329 TGACGTGACTAGGTTGAAGAG 57.083 47.619 0.00 0.00 0.00 2.85
1353 1376 3.093835 TTCTACCCCATGGCCGGG 61.094 66.667 12.41 12.41 46.94 5.73
1539 1562 4.954970 CTGTGCGCCACCCAGGTT 62.955 66.667 4.18 0.00 40.61 3.50
1540 1563 4.514585 TGTGCGCCACCCAGGTTT 62.515 61.111 4.18 0.00 40.61 3.27
1541 1564 3.977244 GTGCGCCACCCAGGTTTG 61.977 66.667 4.18 0.00 40.61 2.93
1542 1565 4.196778 TGCGCCACCCAGGTTTGA 62.197 61.111 4.18 0.00 40.61 2.69
1601 1624 5.551760 AAGCACACAAAGAAATATCCTCG 57.448 39.130 0.00 0.00 0.00 4.63
1604 1627 5.525378 AGCACACAAAGAAATATCCTCGATC 59.475 40.000 0.00 0.00 0.00 3.69
1605 1628 5.277538 GCACACAAAGAAATATCCTCGATCC 60.278 44.000 0.00 0.00 0.00 3.36
1606 1629 5.817296 CACACAAAGAAATATCCTCGATCCA 59.183 40.000 0.00 0.00 0.00 3.41
1607 1630 6.316140 CACACAAAGAAATATCCTCGATCCAA 59.684 38.462 0.00 0.00 0.00 3.53
1608 1631 6.540189 ACACAAAGAAATATCCTCGATCCAAG 59.460 38.462 0.00 0.00 0.00 3.61
1654 4781 8.383318 TCTTTCTTTCTCACCAAATCAACTAG 57.617 34.615 0.00 0.00 0.00 2.57
1655 4782 6.560253 TTCTTTCTCACCAAATCAACTAGC 57.440 37.500 0.00 0.00 0.00 3.42
1767 4919 4.832608 GTGGCCTTAGGGACGGCG 62.833 72.222 4.80 4.80 45.75 6.46
1795 4947 4.865761 GCGCGATGGACGGCACTA 62.866 66.667 12.10 0.00 42.83 2.74
1950 5102 3.274288 CCTATTCTGCCTCAAGACAACC 58.726 50.000 0.00 0.00 0.00 3.77
2008 5166 1.766496 TCAACGAGGTTTTCACCCTCT 59.234 47.619 5.04 0.00 45.63 3.69
2150 5308 4.117661 GACGCGCCTCGAGTTCCT 62.118 66.667 12.31 0.00 40.32 3.36
2199 5357 2.494918 CTCCCGGACGGCTACTTG 59.505 66.667 0.73 0.00 0.00 3.16
2223 5381 0.165944 ACGCGATGTTGCAAGTAAGC 59.834 50.000 15.93 2.94 34.15 3.09
2310 5468 4.143333 CTCGGCCGGGTGAACGAT 62.143 66.667 27.83 0.00 34.60 3.73
2358 5516 2.973899 GAGCTCGACCTGGCAGAA 59.026 61.111 17.94 0.00 0.00 3.02
2368 5529 1.237285 CCTGGCAGAAAGGGACAACG 61.237 60.000 17.94 0.00 0.00 4.10
2494 5655 2.354188 GTGCCGAACAAAACCGCC 60.354 61.111 0.00 0.00 0.00 6.13
2525 5686 4.925307 CATGATGAACGGCGCGCG 62.925 66.667 28.44 28.44 0.00 6.86
2562 5723 1.138859 CGCCTGTCCATGTCCATAGAA 59.861 52.381 0.00 0.00 0.00 2.10
2600 5761 5.104900 AGGAGTTCCAGCGTTTGTTCTATAT 60.105 40.000 0.28 0.00 38.89 0.86
2641 5802 1.563924 TTCCAAGTTCTAGCCGGCTA 58.436 50.000 33.24 33.24 0.00 3.93
2648 5809 6.546403 TCCAAGTTCTAGCCGGCTATATATAG 59.454 42.308 35.29 24.43 0.00 1.31
2649 5810 6.239064 CCAAGTTCTAGCCGGCTATATATAGG 60.239 46.154 35.29 26.54 0.00 2.57
2734 5895 9.645059 CATATGTCTCGGAGTGTATTAATTGAT 57.355 33.333 4.69 0.00 0.00 2.57
2773 5934 2.057922 GCCAAGGGAGATAATCTGGGA 58.942 52.381 0.00 0.00 0.00 4.37
2785 5946 7.550906 GGAGATAATCTGGGATGTAAATGTAGC 59.449 40.741 0.00 0.00 0.00 3.58
2866 6027 0.389391 TGCCGGCTAGCTAGATTGAC 59.611 55.000 29.70 9.28 0.00 3.18
2867 6028 0.676736 GCCGGCTAGCTAGATTGACT 59.323 55.000 25.15 0.00 0.00 3.41
2868 6029 1.887198 GCCGGCTAGCTAGATTGACTA 59.113 52.381 25.15 0.00 0.00 2.59
2869 6030 2.494073 GCCGGCTAGCTAGATTGACTAT 59.506 50.000 25.15 0.00 0.00 2.12
2870 6031 3.695060 GCCGGCTAGCTAGATTGACTATA 59.305 47.826 25.15 0.00 0.00 1.31
2871 6032 4.339814 GCCGGCTAGCTAGATTGACTATAT 59.660 45.833 25.15 0.00 0.00 0.86
2872 6033 5.531659 GCCGGCTAGCTAGATTGACTATATA 59.468 44.000 25.15 0.00 0.00 0.86
2873 6034 6.513720 GCCGGCTAGCTAGATTGACTATATAC 60.514 46.154 25.15 1.40 0.00 1.47
2874 6035 6.768861 CCGGCTAGCTAGATTGACTATATACT 59.231 42.308 25.15 0.00 0.00 2.12
2875 6036 7.932491 CCGGCTAGCTAGATTGACTATATACTA 59.068 40.741 25.15 0.00 0.00 1.82
2876 6037 8.984764 CGGCTAGCTAGATTGACTATATACTAG 58.015 40.741 25.15 0.00 0.00 2.57
2889 6050 9.701098 TGACTATATACTAGCAAAAATTACCCG 57.299 33.333 0.00 0.00 0.00 5.28
2890 6051 9.702494 GACTATATACTAGCAAAAATTACCCGT 57.298 33.333 0.00 0.00 0.00 5.28
2891 6052 9.485206 ACTATATACTAGCAAAAATTACCCGTG 57.515 33.333 0.00 0.00 0.00 4.94
2892 6053 3.842732 ACTAGCAAAAATTACCCGTGC 57.157 42.857 0.00 0.00 35.41 5.34
2893 6054 2.160813 ACTAGCAAAAATTACCCGTGCG 59.839 45.455 0.00 0.00 40.17 5.34
2894 6055 0.955905 AGCAAAAATTACCCGTGCGT 59.044 45.000 0.00 0.00 40.17 5.24
2895 6056 1.338655 AGCAAAAATTACCCGTGCGTT 59.661 42.857 0.00 0.00 40.17 4.84
2896 6057 1.453900 GCAAAAATTACCCGTGCGTTG 59.546 47.619 0.00 0.00 0.00 4.10
2897 6058 1.453900 CAAAAATTACCCGTGCGTTGC 59.546 47.619 0.00 0.00 0.00 4.17
2898 6059 0.669077 AAAATTACCCGTGCGTTGCA 59.331 45.000 0.00 0.00 35.60 4.08
2899 6060 0.669077 AAATTACCCGTGCGTTGCAA 59.331 45.000 0.00 0.00 41.47 4.08
2900 6061 0.039888 AATTACCCGTGCGTTGCAAC 60.040 50.000 19.89 19.89 41.47 4.17
2926 6087 2.586648 AAAAACAGACCCCCTAGCAG 57.413 50.000 0.00 0.00 0.00 4.24
2927 6088 1.446016 AAAACAGACCCCCTAGCAGT 58.554 50.000 0.00 0.00 0.00 4.40
2928 6089 0.693049 AAACAGACCCCCTAGCAGTG 59.307 55.000 0.00 0.00 0.00 3.66
2929 6090 1.201429 AACAGACCCCCTAGCAGTGG 61.201 60.000 0.00 0.00 0.00 4.00
2930 6091 2.689034 AGACCCCCTAGCAGTGGC 60.689 66.667 0.00 0.00 41.61 5.01
2947 6108 3.882025 CGGAGCTTTGTGGAGAGC 58.118 61.111 0.00 0.00 39.17 4.09
2948 6109 1.004560 CGGAGCTTTGTGGAGAGCA 60.005 57.895 0.00 0.00 41.31 4.26
2949 6110 0.603707 CGGAGCTTTGTGGAGAGCAA 60.604 55.000 0.00 0.00 41.31 3.91
2950 6111 0.877743 GGAGCTTTGTGGAGAGCAAC 59.122 55.000 0.00 0.00 41.31 4.17
2951 6112 0.877743 GAGCTTTGTGGAGAGCAACC 59.122 55.000 0.00 0.00 41.31 3.77
2952 6113 0.475906 AGCTTTGTGGAGAGCAACCT 59.524 50.000 0.00 0.00 41.31 3.50
2953 6114 0.595095 GCTTTGTGGAGAGCAACCTG 59.405 55.000 0.00 0.00 38.73 4.00
2954 6115 1.242076 CTTTGTGGAGAGCAACCTGG 58.758 55.000 0.00 0.00 0.00 4.45
2955 6116 0.178992 TTTGTGGAGAGCAACCTGGG 60.179 55.000 0.00 0.00 0.00 4.45
2956 6117 2.360475 GTGGAGAGCAACCTGGGC 60.360 66.667 0.00 0.00 0.00 5.36
2957 6118 3.650950 TGGAGAGCAACCTGGGCC 61.651 66.667 0.00 0.00 0.00 5.80
2958 6119 3.650950 GGAGAGCAACCTGGGCCA 61.651 66.667 5.85 5.85 0.00 5.36
2959 6120 2.679716 GAGAGCAACCTGGGCCAT 59.320 61.111 6.72 0.00 0.00 4.40
2960 6121 1.000396 GAGAGCAACCTGGGCCATT 60.000 57.895 6.72 0.00 0.00 3.16
2961 6122 1.304713 AGAGCAACCTGGGCCATTG 60.305 57.895 6.72 11.47 0.00 2.82
2982 6143 3.288099 CCCCCAACCCATGAGAAAG 57.712 57.895 0.00 0.00 0.00 2.62
2983 6144 0.409484 CCCCCAACCCATGAGAAAGT 59.591 55.000 0.00 0.00 0.00 2.66
2984 6145 1.203174 CCCCCAACCCATGAGAAAGTT 60.203 52.381 0.00 0.00 0.00 2.66
2985 6146 2.042433 CCCCCAACCCATGAGAAAGTTA 59.958 50.000 0.00 0.00 0.00 2.24
2986 6147 3.356290 CCCCAACCCATGAGAAAGTTAG 58.644 50.000 0.00 0.00 0.00 2.34
2987 6148 2.755103 CCCAACCCATGAGAAAGTTAGC 59.245 50.000 0.00 0.00 0.00 3.09
2988 6149 3.420893 CCAACCCATGAGAAAGTTAGCA 58.579 45.455 0.00 0.00 0.00 3.49
2989 6150 3.826157 CCAACCCATGAGAAAGTTAGCAA 59.174 43.478 0.00 0.00 0.00 3.91
2990 6151 4.280677 CCAACCCATGAGAAAGTTAGCAAA 59.719 41.667 0.00 0.00 0.00 3.68
2991 6152 5.047092 CCAACCCATGAGAAAGTTAGCAAAT 60.047 40.000 0.00 0.00 0.00 2.32
2992 6153 6.152661 CCAACCCATGAGAAAGTTAGCAAATA 59.847 38.462 0.00 0.00 0.00 1.40
2993 6154 7.147846 CCAACCCATGAGAAAGTTAGCAAATAT 60.148 37.037 0.00 0.00 0.00 1.28
2994 6155 7.573968 ACCCATGAGAAAGTTAGCAAATATC 57.426 36.000 0.00 0.00 0.00 1.63
2995 6156 6.547510 ACCCATGAGAAAGTTAGCAAATATCC 59.452 38.462 0.00 0.00 0.00 2.59
2996 6157 6.015940 CCCATGAGAAAGTTAGCAAATATCCC 60.016 42.308 0.00 0.00 0.00 3.85
2997 6158 6.015940 CCATGAGAAAGTTAGCAAATATCCCC 60.016 42.308 0.00 0.00 0.00 4.81
2998 6159 6.327386 TGAGAAAGTTAGCAAATATCCCCT 57.673 37.500 0.00 0.00 0.00 4.79
2999 6160 7.446106 TGAGAAAGTTAGCAAATATCCCCTA 57.554 36.000 0.00 0.00 0.00 3.53
3000 6161 7.509546 TGAGAAAGTTAGCAAATATCCCCTAG 58.490 38.462 0.00 0.00 0.00 3.02
3001 6162 7.127339 TGAGAAAGTTAGCAAATATCCCCTAGT 59.873 37.037 0.00 0.00 0.00 2.57
3002 6163 8.562949 AGAAAGTTAGCAAATATCCCCTAGTA 57.437 34.615 0.00 0.00 0.00 1.82
3003 6164 9.172060 AGAAAGTTAGCAAATATCCCCTAGTAT 57.828 33.333 0.00 0.00 0.00 2.12
3004 6165 9.794719 GAAAGTTAGCAAATATCCCCTAGTATT 57.205 33.333 0.00 0.00 0.00 1.89
3005 6166 9.794719 AAAGTTAGCAAATATCCCCTAGTATTC 57.205 33.333 0.00 0.00 0.00 1.75
3006 6167 8.506196 AGTTAGCAAATATCCCCTAGTATTCA 57.494 34.615 0.00 0.00 0.00 2.57
3007 6168 8.598041 AGTTAGCAAATATCCCCTAGTATTCAG 58.402 37.037 0.00 0.00 0.00 3.02
3008 6169 5.810095 AGCAAATATCCCCTAGTATTCAGC 58.190 41.667 0.00 0.00 0.00 4.26
3009 6170 4.944317 GCAAATATCCCCTAGTATTCAGCC 59.056 45.833 0.00 0.00 0.00 4.85
3010 6171 5.501156 CAAATATCCCCTAGTATTCAGCCC 58.499 45.833 0.00 0.00 0.00 5.19
3011 6172 2.815357 ATCCCCTAGTATTCAGCCCA 57.185 50.000 0.00 0.00 0.00 5.36
3012 6173 2.815357 TCCCCTAGTATTCAGCCCAT 57.185 50.000 0.00 0.00 0.00 4.00
3013 6174 3.935240 TCCCCTAGTATTCAGCCCATA 57.065 47.619 0.00 0.00 0.00 2.74
3014 6175 4.435977 TCCCCTAGTATTCAGCCCATAT 57.564 45.455 0.00 0.00 0.00 1.78
3015 6176 4.104086 TCCCCTAGTATTCAGCCCATATG 58.896 47.826 0.00 0.00 0.00 1.78
3016 6177 3.846588 CCCCTAGTATTCAGCCCATATGT 59.153 47.826 1.24 0.00 0.00 2.29
3017 6178 4.080863 CCCCTAGTATTCAGCCCATATGTC 60.081 50.000 1.24 0.00 0.00 3.06
3018 6179 4.382040 CCCTAGTATTCAGCCCATATGTCG 60.382 50.000 1.24 0.00 0.00 4.35
3019 6180 4.462834 CCTAGTATTCAGCCCATATGTCGA 59.537 45.833 1.24 0.00 0.00 4.20
3020 6181 4.527509 AGTATTCAGCCCATATGTCGAG 57.472 45.455 1.24 0.00 0.00 4.04
3021 6182 3.898123 AGTATTCAGCCCATATGTCGAGT 59.102 43.478 1.24 0.00 0.00 4.18
3022 6183 3.845781 ATTCAGCCCATATGTCGAGTT 57.154 42.857 1.24 0.00 0.00 3.01
3023 6184 4.955811 ATTCAGCCCATATGTCGAGTTA 57.044 40.909 1.24 0.00 0.00 2.24
3024 6185 4.746535 TTCAGCCCATATGTCGAGTTAA 57.253 40.909 1.24 0.00 0.00 2.01
3025 6186 4.746535 TCAGCCCATATGTCGAGTTAAA 57.253 40.909 1.24 0.00 0.00 1.52
3026 6187 5.092554 TCAGCCCATATGTCGAGTTAAAA 57.907 39.130 1.24 0.00 0.00 1.52
3027 6188 5.680619 TCAGCCCATATGTCGAGTTAAAAT 58.319 37.500 1.24 0.00 0.00 1.82
3028 6189 5.758296 TCAGCCCATATGTCGAGTTAAAATC 59.242 40.000 1.24 0.00 0.00 2.17
3029 6190 5.527214 CAGCCCATATGTCGAGTTAAAATCA 59.473 40.000 1.24 0.00 0.00 2.57
3030 6191 5.760253 AGCCCATATGTCGAGTTAAAATCAG 59.240 40.000 1.24 0.00 0.00 2.90
3031 6192 5.560953 GCCCATATGTCGAGTTAAAATCAGC 60.561 44.000 1.24 0.00 0.00 4.26
3032 6193 5.049405 CCCATATGTCGAGTTAAAATCAGCC 60.049 44.000 1.24 0.00 0.00 4.85
3033 6194 5.049405 CCATATGTCGAGTTAAAATCAGCCC 60.049 44.000 1.24 0.00 0.00 5.19
3034 6195 3.410631 TGTCGAGTTAAAATCAGCCCA 57.589 42.857 0.00 0.00 0.00 5.36
3035 6196 3.745799 TGTCGAGTTAAAATCAGCCCAA 58.254 40.909 0.00 0.00 0.00 4.12
3036 6197 4.138290 TGTCGAGTTAAAATCAGCCCAAA 58.862 39.130 0.00 0.00 0.00 3.28
3037 6198 4.580995 TGTCGAGTTAAAATCAGCCCAAAA 59.419 37.500 0.00 0.00 0.00 2.44
3038 6199 5.154222 GTCGAGTTAAAATCAGCCCAAAAG 58.846 41.667 0.00 0.00 0.00 2.27
3039 6200 3.920412 CGAGTTAAAATCAGCCCAAAAGC 59.080 43.478 0.00 0.00 0.00 3.51
3040 6201 4.558496 CGAGTTAAAATCAGCCCAAAAGCA 60.558 41.667 0.00 0.00 34.23 3.91
3041 6202 5.482006 GAGTTAAAATCAGCCCAAAAGCAT 58.518 37.500 0.00 0.00 34.23 3.79
3042 6203 5.240121 AGTTAAAATCAGCCCAAAAGCATG 58.760 37.500 0.00 0.00 34.23 4.06
3043 6204 3.775261 AAAATCAGCCCAAAAGCATGT 57.225 38.095 0.00 0.00 34.23 3.21
3044 6205 3.775261 AAATCAGCCCAAAAGCATGTT 57.225 38.095 0.00 0.00 34.23 2.71
3045 6206 3.775261 AATCAGCCCAAAAGCATGTTT 57.225 38.095 0.00 0.00 34.23 2.83
3046 6207 2.818130 TCAGCCCAAAAGCATGTTTC 57.182 45.000 0.00 0.00 34.23 2.78
3047 6208 2.318908 TCAGCCCAAAAGCATGTTTCT 58.681 42.857 0.00 0.00 34.23 2.52
3048 6209 2.699846 TCAGCCCAAAAGCATGTTTCTT 59.300 40.909 0.00 0.00 34.23 2.52
3049 6210 2.803956 CAGCCCAAAAGCATGTTTCTTG 59.196 45.455 0.00 3.28 34.23 3.02
3050 6211 1.532437 GCCCAAAAGCATGTTTCTTGC 59.468 47.619 0.00 0.42 40.45 4.01
3051 6212 2.145536 CCCAAAAGCATGTTTCTTGCC 58.854 47.619 0.00 0.00 41.06 4.52
3052 6213 2.145536 CCAAAAGCATGTTTCTTGCCC 58.854 47.619 0.00 0.00 41.06 5.36
3053 6214 2.145536 CAAAAGCATGTTTCTTGCCCC 58.854 47.619 0.00 0.00 41.06 5.80
3054 6215 1.720781 AAAGCATGTTTCTTGCCCCT 58.279 45.000 0.00 0.00 41.06 4.79
3055 6216 1.260544 AAGCATGTTTCTTGCCCCTC 58.739 50.000 0.00 0.00 41.06 4.30
3056 6217 0.613012 AGCATGTTTCTTGCCCCTCC 60.613 55.000 0.00 0.00 41.06 4.30
3057 6218 0.899717 GCATGTTTCTTGCCCCTCCA 60.900 55.000 0.00 0.00 33.95 3.86
3058 6219 1.180029 CATGTTTCTTGCCCCTCCAG 58.820 55.000 0.00 0.00 0.00 3.86
3059 6220 0.613012 ATGTTTCTTGCCCCTCCAGC 60.613 55.000 0.00 0.00 0.00 4.85
3060 6221 1.979155 GTTTCTTGCCCCTCCAGCC 60.979 63.158 0.00 0.00 0.00 4.85
3061 6222 3.224007 TTTCTTGCCCCTCCAGCCC 62.224 63.158 0.00 0.00 0.00 5.19
3063 6224 3.747579 CTTGCCCCTCCAGCCCAT 61.748 66.667 0.00 0.00 0.00 4.00
3064 6225 3.275271 TTGCCCCTCCAGCCCATT 61.275 61.111 0.00 0.00 0.00 3.16
3065 6226 2.810488 CTTGCCCCTCCAGCCCATTT 62.810 60.000 0.00 0.00 0.00 2.32
3066 6227 2.761213 GCCCCTCCAGCCCATTTG 60.761 66.667 0.00 0.00 0.00 2.32
3067 6228 2.761213 CCCCTCCAGCCCATTTGC 60.761 66.667 0.00 0.00 0.00 3.68
3068 6229 2.761213 CCCTCCAGCCCATTTGCC 60.761 66.667 0.00 0.00 0.00 4.52
3069 6230 2.761213 CCTCCAGCCCATTTGCCC 60.761 66.667 0.00 0.00 0.00 5.36
3070 6231 2.761213 CTCCAGCCCATTTGCCCC 60.761 66.667 0.00 0.00 0.00 5.80
3071 6232 3.275271 TCCAGCCCATTTGCCCCT 61.275 61.111 0.00 0.00 0.00 4.79
3072 6233 2.761213 CCAGCCCATTTGCCCCTC 60.761 66.667 0.00 0.00 0.00 4.30
3073 6234 2.761213 CAGCCCATTTGCCCCTCC 60.761 66.667 0.00 0.00 0.00 4.30
3074 6235 3.275271 AGCCCATTTGCCCCTCCA 61.275 61.111 0.00 0.00 0.00 3.86
3075 6236 2.041612 GCCCATTTGCCCCTCCAT 60.042 61.111 0.00 0.00 0.00 3.41
3076 6237 1.232792 GCCCATTTGCCCCTCCATA 59.767 57.895 0.00 0.00 0.00 2.74
3077 6238 0.398381 GCCCATTTGCCCCTCCATAA 60.398 55.000 0.00 0.00 0.00 1.90
3078 6239 1.969240 GCCCATTTGCCCCTCCATAAA 60.969 52.381 0.00 0.00 0.00 1.40
3079 6240 2.693210 CCCATTTGCCCCTCCATAAAT 58.307 47.619 0.00 0.00 0.00 1.40
3080 6241 3.047857 CCCATTTGCCCCTCCATAAATT 58.952 45.455 0.00 0.00 0.00 1.82
3081 6242 3.071457 CCCATTTGCCCCTCCATAAATTC 59.929 47.826 0.00 0.00 0.00 2.17
3082 6243 3.710677 CCATTTGCCCCTCCATAAATTCA 59.289 43.478 0.00 0.00 0.00 2.57
3083 6244 4.202284 CCATTTGCCCCTCCATAAATTCAG 60.202 45.833 0.00 0.00 0.00 3.02
3084 6245 2.071778 TGCCCCTCCATAAATTCAGC 57.928 50.000 0.00 0.00 0.00 4.26
3085 6246 1.332195 GCCCCTCCATAAATTCAGCC 58.668 55.000 0.00 0.00 0.00 4.85
3086 6247 2.001076 CCCCTCCATAAATTCAGCCC 57.999 55.000 0.00 0.00 0.00 5.19
3087 6248 1.217689 CCCCTCCATAAATTCAGCCCA 59.782 52.381 0.00 0.00 0.00 5.36
3088 6249 2.359143 CCCCTCCATAAATTCAGCCCAA 60.359 50.000 0.00 0.00 0.00 4.12
3089 6250 2.961062 CCCTCCATAAATTCAGCCCAAG 59.039 50.000 0.00 0.00 0.00 3.61
3090 6251 2.363359 CCTCCATAAATTCAGCCCAAGC 59.637 50.000 0.00 0.00 40.32 4.01
3118 6279 0.119561 TGCCCCCTAGTCCAAAGGTA 59.880 55.000 0.00 0.00 31.70 3.08
3122 6283 2.645797 CCCCCTAGTCCAAAGGTACAAA 59.354 50.000 0.00 0.00 31.70 2.83
3123 6284 3.308188 CCCCCTAGTCCAAAGGTACAAAG 60.308 52.174 0.00 0.00 31.70 2.77
3141 6302 0.534427 AGCCACATCATGCTCCATCG 60.534 55.000 0.00 0.00 30.33 3.84
3144 6305 1.306148 CACATCATGCTCCATCGCTT 58.694 50.000 0.00 0.00 0.00 4.68
3154 6315 3.004839 TGCTCCATCGCTTACATACTCTC 59.995 47.826 0.00 0.00 0.00 3.20
3160 6321 7.621796 TCCATCGCTTACATACTCTCTATCTA 58.378 38.462 0.00 0.00 0.00 1.98
3162 6323 8.556194 CCATCGCTTACATACTCTCTATCTATC 58.444 40.741 0.00 0.00 0.00 2.08
3163 6324 9.325198 CATCGCTTACATACTCTCTATCTATCT 57.675 37.037 0.00 0.00 0.00 1.98
3219 6380 8.021396 TCTATCTATCACGTTCATACATTTCGG 58.979 37.037 0.00 0.00 0.00 4.30
3264 6428 7.388224 ACATGAAATAAAAAGTGCATGCATGAA 59.612 29.630 30.64 18.49 37.28 2.57
3265 6429 7.354025 TGAAATAAAAAGTGCATGCATGAAG 57.646 32.000 30.64 4.30 0.00 3.02
3267 6431 8.087136 TGAAATAAAAAGTGCATGCATGAAGTA 58.913 29.630 30.64 13.94 0.00 2.24
3268 6432 8.470040 AAATAAAAAGTGCATGCATGAAGTAG 57.530 30.769 30.64 2.65 0.00 2.57
3269 6433 5.710513 AAAAAGTGCATGCATGAAGTAGA 57.289 34.783 30.64 3.04 0.00 2.59
3279 6632 5.840243 TGCATGAAGTAGATTGGAAATGG 57.160 39.130 0.00 0.00 0.00 3.16
3333 6686 7.578310 ACATATGTGAGAATTGCTAAATGCT 57.422 32.000 7.78 0.00 43.37 3.79
3341 6694 6.646240 TGAGAATTGCTAAATGCTCCAAAAAC 59.354 34.615 4.37 0.00 45.01 2.43
3367 6720 7.054855 TGTTTAAACAAAACTGTCATGCAAC 57.945 32.000 18.54 0.00 46.42 4.17
3392 6747 8.583296 ACCTATACATCTAAATAAACGGGACTC 58.417 37.037 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.704289 TCTAGCATTTCAGAAAATCCCATG 57.296 37.500 0.00 0.00 32.69 3.66
4 5 6.492772 GGATCTAGCATTTCAGAAAATCCCAT 59.507 38.462 9.60 0.00 32.69 4.00
5 6 5.829924 GGATCTAGCATTTCAGAAAATCCCA 59.170 40.000 9.60 0.00 32.69 4.37
6 7 6.067350 AGGATCTAGCATTTCAGAAAATCCC 58.933 40.000 14.61 3.68 32.69 3.85
7 8 7.284034 TGAAGGATCTAGCATTTCAGAAAATCC 59.716 37.037 11.79 11.79 32.69 3.01
8 9 8.127954 GTGAAGGATCTAGCATTTCAGAAAATC 58.872 37.037 0.00 0.00 32.69 2.17
9 10 7.201679 CGTGAAGGATCTAGCATTTCAGAAAAT 60.202 37.037 0.00 0.00 35.43 1.82
10 11 6.092670 CGTGAAGGATCTAGCATTTCAGAAAA 59.907 38.462 0.00 0.00 0.00 2.29
11 12 5.582269 CGTGAAGGATCTAGCATTTCAGAAA 59.418 40.000 0.00 0.00 0.00 2.52
12 13 5.111989 CGTGAAGGATCTAGCATTTCAGAA 58.888 41.667 0.00 0.00 0.00 3.02
13 14 4.442052 CCGTGAAGGATCTAGCATTTCAGA 60.442 45.833 0.00 0.00 45.00 3.27
14 15 3.806521 CCGTGAAGGATCTAGCATTTCAG 59.193 47.826 0.00 0.00 45.00 3.02
15 16 3.197766 ACCGTGAAGGATCTAGCATTTCA 59.802 43.478 0.00 0.00 45.00 2.69
16 17 3.798202 ACCGTGAAGGATCTAGCATTTC 58.202 45.455 0.00 0.00 45.00 2.17
17 18 3.914426 ACCGTGAAGGATCTAGCATTT 57.086 42.857 0.00 0.00 45.00 2.32
18 19 5.353394 TTTACCGTGAAGGATCTAGCATT 57.647 39.130 0.00 0.00 45.00 3.56
19 20 5.116882 GTTTTACCGTGAAGGATCTAGCAT 58.883 41.667 0.00 0.00 45.00 3.79
20 21 4.501071 GTTTTACCGTGAAGGATCTAGCA 58.499 43.478 0.00 0.00 45.00 3.49
21 22 3.869832 GGTTTTACCGTGAAGGATCTAGC 59.130 47.826 0.00 0.00 45.00 3.42
22 23 5.340439 AGGTTTTACCGTGAAGGATCTAG 57.660 43.478 0.00 0.00 44.90 2.43
23 24 5.163622 CGTAGGTTTTACCGTGAAGGATCTA 60.164 44.000 0.00 0.00 44.90 1.98
24 25 4.381292 CGTAGGTTTTACCGTGAAGGATCT 60.381 45.833 0.00 0.00 44.90 2.75
25 26 3.861689 CGTAGGTTTTACCGTGAAGGATC 59.138 47.826 0.00 0.00 44.90 3.36
26 27 3.853475 CGTAGGTTTTACCGTGAAGGAT 58.147 45.455 0.00 0.00 44.90 3.24
27 28 3.302365 CGTAGGTTTTACCGTGAAGGA 57.698 47.619 0.00 0.00 44.90 3.36
45 46 9.715121 TCTTACATAATTAAAGTTTGACTCCGT 57.285 29.630 0.00 0.00 0.00 4.69
56 57 9.755064 CCGCCGATAATTCTTACATAATTAAAG 57.245 33.333 0.00 0.00 33.69 1.85
57 58 9.275398 ACCGCCGATAATTCTTACATAATTAAA 57.725 29.630 0.00 0.00 33.69 1.52
58 59 8.714179 CACCGCCGATAATTCTTACATAATTAA 58.286 33.333 0.00 0.00 33.69 1.40
59 60 8.089597 TCACCGCCGATAATTCTTACATAATTA 58.910 33.333 0.00 0.00 34.30 1.40
60 61 6.932400 TCACCGCCGATAATTCTTACATAATT 59.068 34.615 0.00 0.00 0.00 1.40
61 62 6.460781 TCACCGCCGATAATTCTTACATAAT 58.539 36.000 0.00 0.00 0.00 1.28
62 63 5.845103 TCACCGCCGATAATTCTTACATAA 58.155 37.500 0.00 0.00 0.00 1.90
63 64 5.456548 TCACCGCCGATAATTCTTACATA 57.543 39.130 0.00 0.00 0.00 2.29
64 65 4.330944 TCACCGCCGATAATTCTTACAT 57.669 40.909 0.00 0.00 0.00 2.29
65 66 3.804786 TCACCGCCGATAATTCTTACA 57.195 42.857 0.00 0.00 0.00 2.41
66 67 5.007332 ACATTTCACCGCCGATAATTCTTAC 59.993 40.000 0.00 0.00 0.00 2.34
67 68 5.120399 ACATTTCACCGCCGATAATTCTTA 58.880 37.500 0.00 0.00 0.00 2.10
68 69 3.945285 ACATTTCACCGCCGATAATTCTT 59.055 39.130 0.00 0.00 0.00 2.52
69 70 3.541632 ACATTTCACCGCCGATAATTCT 58.458 40.909 0.00 0.00 0.00 2.40
70 71 3.963383 ACATTTCACCGCCGATAATTC 57.037 42.857 0.00 0.00 0.00 2.17
71 72 3.442273 ACAACATTTCACCGCCGATAATT 59.558 39.130 0.00 0.00 0.00 1.40
72 73 3.013921 ACAACATTTCACCGCCGATAAT 58.986 40.909 0.00 0.00 0.00 1.28
73 74 2.428491 ACAACATTTCACCGCCGATAA 58.572 42.857 0.00 0.00 0.00 1.75
74 75 2.102070 ACAACATTTCACCGCCGATA 57.898 45.000 0.00 0.00 0.00 2.92
75 76 1.735571 GTACAACATTTCACCGCCGAT 59.264 47.619 0.00 0.00 0.00 4.18
76 77 1.149987 GTACAACATTTCACCGCCGA 58.850 50.000 0.00 0.00 0.00 5.54
77 78 0.869068 TGTACAACATTTCACCGCCG 59.131 50.000 0.00 0.00 0.00 6.46
78 79 2.147958 TCTGTACAACATTTCACCGCC 58.852 47.619 0.00 0.00 0.00 6.13
79 80 3.889196 TTCTGTACAACATTTCACCGC 57.111 42.857 0.00 0.00 0.00 5.68
80 81 8.073768 ACTTAAATTCTGTACAACATTTCACCG 58.926 33.333 12.91 5.85 0.00 4.94
81 82 9.744468 AACTTAAATTCTGTACAACATTTCACC 57.256 29.630 12.91 0.00 0.00 4.02
105 106 8.308207 ACAAGGAGTTCTCTGATACTTAAGAAC 58.692 37.037 10.09 6.08 45.04 3.01
106 107 8.423906 ACAAGGAGTTCTCTGATACTTAAGAA 57.576 34.615 10.09 0.00 0.00 2.52
107 108 7.670140 TGACAAGGAGTTCTCTGATACTTAAGA 59.330 37.037 10.09 0.00 0.00 2.10
108 109 7.831753 TGACAAGGAGTTCTCTGATACTTAAG 58.168 38.462 0.00 0.00 0.00 1.85
109 110 7.776618 TGACAAGGAGTTCTCTGATACTTAA 57.223 36.000 0.00 0.00 0.00 1.85
110 111 7.776618 TTGACAAGGAGTTCTCTGATACTTA 57.223 36.000 0.00 0.00 0.00 2.24
111 112 6.672266 TTGACAAGGAGTTCTCTGATACTT 57.328 37.500 0.00 0.00 0.00 2.24
112 113 6.672266 TTTGACAAGGAGTTCTCTGATACT 57.328 37.500 0.00 0.00 0.00 2.12
113 114 7.148340 CCATTTTGACAAGGAGTTCTCTGATAC 60.148 40.741 0.00 0.00 0.00 2.24
114 115 6.881065 CCATTTTGACAAGGAGTTCTCTGATA 59.119 38.462 0.00 0.00 0.00 2.15
115 116 5.709164 CCATTTTGACAAGGAGTTCTCTGAT 59.291 40.000 0.00 0.00 0.00 2.90
116 117 5.065914 CCATTTTGACAAGGAGTTCTCTGA 58.934 41.667 0.00 0.00 0.00 3.27
117 118 4.320788 GCCATTTTGACAAGGAGTTCTCTG 60.321 45.833 0.00 0.00 0.00 3.35
118 119 3.823304 GCCATTTTGACAAGGAGTTCTCT 59.177 43.478 0.00 0.00 0.00 3.10
119 120 3.057245 GGCCATTTTGACAAGGAGTTCTC 60.057 47.826 0.00 0.00 0.00 2.87
120 121 2.893489 GGCCATTTTGACAAGGAGTTCT 59.107 45.455 0.00 0.00 0.00 3.01
121 122 2.351738 CGGCCATTTTGACAAGGAGTTC 60.352 50.000 2.24 0.00 0.00 3.01
122 123 1.613437 CGGCCATTTTGACAAGGAGTT 59.387 47.619 2.24 0.00 0.00 3.01
123 124 1.202879 TCGGCCATTTTGACAAGGAGT 60.203 47.619 2.24 0.00 0.00 3.85
124 125 1.533625 TCGGCCATTTTGACAAGGAG 58.466 50.000 2.24 0.00 0.00 3.69
125 126 1.818060 CATCGGCCATTTTGACAAGGA 59.182 47.619 2.24 0.00 0.00 3.36
126 127 1.818060 TCATCGGCCATTTTGACAAGG 59.182 47.619 2.24 0.00 0.00 3.61
127 128 2.489329 AGTCATCGGCCATTTTGACAAG 59.511 45.455 20.14 0.00 40.69 3.16
128 129 2.513753 AGTCATCGGCCATTTTGACAA 58.486 42.857 20.14 0.00 40.69 3.18
129 130 2.198827 AGTCATCGGCCATTTTGACA 57.801 45.000 20.14 0.00 40.69 3.58
130 131 3.136808 GAAGTCATCGGCCATTTTGAC 57.863 47.619 2.24 9.78 38.97 3.18
142 143 3.017323 CATGCGGGCGAAGTCATC 58.983 61.111 0.00 0.00 0.00 2.92
143 144 3.204827 GCATGCGGGCGAAGTCAT 61.205 61.111 0.00 0.00 0.00 3.06
151 152 4.179579 GTTCTTCGGCATGCGGGC 62.180 66.667 23.26 3.88 39.06 6.13
152 153 3.508840 GGTTCTTCGGCATGCGGG 61.509 66.667 23.26 12.73 0.00 6.13
153 154 2.436646 AGGTTCTTCGGCATGCGG 60.437 61.111 18.51 18.51 0.00 5.69
154 155 1.970917 GACAGGTTCTTCGGCATGCG 61.971 60.000 12.44 7.41 0.00 4.73
155 156 0.674895 AGACAGGTTCTTCGGCATGC 60.675 55.000 9.90 9.90 0.00 4.06
156 157 1.466167 CAAGACAGGTTCTTCGGCATG 59.534 52.381 0.00 0.00 43.23 4.06
157 158 1.813513 CAAGACAGGTTCTTCGGCAT 58.186 50.000 0.00 0.00 43.23 4.40
158 159 0.884704 GCAAGACAGGTTCTTCGGCA 60.885 55.000 0.00 0.00 43.23 5.69
159 160 0.603975 AGCAAGACAGGTTCTTCGGC 60.604 55.000 0.00 0.00 43.23 5.54
160 161 1.001406 AGAGCAAGACAGGTTCTTCGG 59.999 52.381 0.00 0.00 43.23 4.30
161 162 2.447244 AGAGCAAGACAGGTTCTTCG 57.553 50.000 0.00 0.00 43.23 3.79
162 163 3.251972 CCAAAGAGCAAGACAGGTTCTTC 59.748 47.826 0.00 0.00 43.23 2.87
163 164 3.217626 CCAAAGAGCAAGACAGGTTCTT 58.782 45.455 0.00 0.00 46.29 2.52
164 165 2.487986 CCCAAAGAGCAAGACAGGTTCT 60.488 50.000 0.00 0.00 35.32 3.01
165 166 1.882623 CCCAAAGAGCAAGACAGGTTC 59.117 52.381 0.00 0.00 0.00 3.62
166 167 1.494721 TCCCAAAGAGCAAGACAGGTT 59.505 47.619 0.00 0.00 0.00 3.50
167 168 1.072965 CTCCCAAAGAGCAAGACAGGT 59.927 52.381 0.00 0.00 35.31 4.00
168 169 1.818642 CTCCCAAAGAGCAAGACAGG 58.181 55.000 0.00 0.00 35.31 4.00
188 189 1.353103 CGCCATGCCGCTAAAGAAG 59.647 57.895 0.00 0.00 0.00 2.85
189 190 2.112198 CCGCCATGCCGCTAAAGAA 61.112 57.895 0.00 0.00 0.00 2.52
190 191 2.513666 CCGCCATGCCGCTAAAGA 60.514 61.111 0.00 0.00 0.00 2.52
191 192 4.256090 GCCGCCATGCCGCTAAAG 62.256 66.667 0.00 0.00 30.75 1.85
230 231 4.250305 ACCACTGCACCGACCACC 62.250 66.667 0.00 0.00 0.00 4.61
231 232 2.972505 CACCACTGCACCGACCAC 60.973 66.667 0.00 0.00 0.00 4.16
232 233 3.475494 ACACCACTGCACCGACCA 61.475 61.111 0.00 0.00 0.00 4.02
233 234 2.972505 CACACCACTGCACCGACC 60.973 66.667 0.00 0.00 0.00 4.79
234 235 2.972505 CCACACCACTGCACCGAC 60.973 66.667 0.00 0.00 0.00 4.79
235 236 4.248842 CCCACACCACTGCACCGA 62.249 66.667 0.00 0.00 0.00 4.69
236 237 4.562425 ACCCACACCACTGCACCG 62.562 66.667 0.00 0.00 0.00 4.94
237 238 2.594592 GACCCACACCACTGCACC 60.595 66.667 0.00 0.00 0.00 5.01
238 239 1.893808 CAGACCCACACCACTGCAC 60.894 63.158 0.00 0.00 0.00 4.57
239 240 2.510411 CAGACCCACACCACTGCA 59.490 61.111 0.00 0.00 0.00 4.41
240 241 2.980233 GCAGACCCACACCACTGC 60.980 66.667 0.00 0.00 46.25 4.40
241 242 1.598962 CAGCAGACCCACACCACTG 60.599 63.158 0.00 0.00 0.00 3.66
242 243 2.072487 ACAGCAGACCCACACCACT 61.072 57.895 0.00 0.00 0.00 4.00
243 244 1.893808 CACAGCAGACCCACACCAC 60.894 63.158 0.00 0.00 0.00 4.16
244 245 2.510411 CACAGCAGACCCACACCA 59.490 61.111 0.00 0.00 0.00 4.17
245 246 2.281761 CCACAGCAGACCCACACC 60.282 66.667 0.00 0.00 0.00 4.16
246 247 1.893808 CACCACAGCAGACCCACAC 60.894 63.158 0.00 0.00 0.00 3.82
247 248 2.510411 CACCACAGCAGACCCACA 59.490 61.111 0.00 0.00 0.00 4.17
248 249 2.281761 CCACCACAGCAGACCCAC 60.282 66.667 0.00 0.00 0.00 4.61
249 250 2.772191 ACCACCACAGCAGACCCA 60.772 61.111 0.00 0.00 0.00 4.51
250 251 2.281761 CACCACCACAGCAGACCC 60.282 66.667 0.00 0.00 0.00 4.46
251 252 1.893808 CACACCACCACAGCAGACC 60.894 63.158 0.00 0.00 0.00 3.85
252 253 1.893808 CCACACCACCACAGCAGAC 60.894 63.158 0.00 0.00 0.00 3.51
253 254 2.510411 CCACACCACCACAGCAGA 59.490 61.111 0.00 0.00 0.00 4.26
254 255 2.595463 CCCACACCACCACAGCAG 60.595 66.667 0.00 0.00 0.00 4.24
255 256 4.202574 CCCCACACCACCACAGCA 62.203 66.667 0.00 0.00 0.00 4.41
296 297 4.814294 CTCCTGCCGCGTACCACC 62.814 72.222 4.92 0.00 0.00 4.61
297 298 4.814294 CCTCCTGCCGCGTACCAC 62.814 72.222 4.92 0.00 0.00 4.16
308 309 4.039092 CACCCACAGCCCCTCCTG 62.039 72.222 0.00 0.00 38.78 3.86
330 331 4.778415 CACTGACCGCCTCGACCG 62.778 72.222 0.00 0.00 0.00 4.79
335 336 4.803426 CTCCGCACTGACCGCCTC 62.803 72.222 0.00 0.00 0.00 4.70
339 340 4.436998 GGACCTCCGCACTGACCG 62.437 72.222 0.00 0.00 0.00 4.79
340 341 2.185310 ATTGGACCTCCGCACTGACC 62.185 60.000 0.00 0.00 39.43 4.02
341 342 0.741221 GATTGGACCTCCGCACTGAC 60.741 60.000 0.00 0.00 39.43 3.51
342 343 1.596934 GATTGGACCTCCGCACTGA 59.403 57.895 0.00 0.00 39.43 3.41
343 344 1.811266 CGATTGGACCTCCGCACTG 60.811 63.158 0.00 0.00 39.43 3.66
344 345 1.949847 CTCGATTGGACCTCCGCACT 61.950 60.000 0.00 0.00 39.43 4.40
345 346 1.519455 CTCGATTGGACCTCCGCAC 60.519 63.158 0.00 0.00 39.43 5.34
346 347 2.892640 CTCGATTGGACCTCCGCA 59.107 61.111 0.00 0.00 39.43 5.69
347 348 2.586357 GCTCGATTGGACCTCCGC 60.586 66.667 0.00 0.00 39.43 5.54
348 349 2.278857 CGCTCGATTGGACCTCCG 60.279 66.667 0.00 0.00 39.43 4.63
349 350 2.107141 CCGCTCGATTGGACCTCC 59.893 66.667 0.00 0.00 0.00 4.30
350 351 1.519455 CACCGCTCGATTGGACCTC 60.519 63.158 9.84 0.00 0.00 3.85
351 352 2.579201 CACCGCTCGATTGGACCT 59.421 61.111 9.84 0.00 0.00 3.85
352 353 2.511600 CCACCGCTCGATTGGACC 60.512 66.667 9.84 0.00 31.39 4.46
353 354 3.195698 GCCACCGCTCGATTGGAC 61.196 66.667 9.84 2.89 31.39 4.02
354 355 3.664025 CTGCCACCGCTCGATTGGA 62.664 63.158 9.84 0.60 35.36 3.53
355 356 3.197790 CTGCCACCGCTCGATTGG 61.198 66.667 1.73 1.73 35.36 3.16
356 357 2.434884 ACTGCCACCGCTCGATTG 60.435 61.111 0.00 0.00 35.36 2.67
357 358 2.434884 CACTGCCACCGCTCGATT 60.435 61.111 0.00 0.00 35.36 3.34
392 393 2.671619 ATTCCACCACCGCAACCG 60.672 61.111 0.00 0.00 0.00 4.44
393 394 2.686816 CGATTCCACCACCGCAACC 61.687 63.158 0.00 0.00 0.00 3.77
394 395 1.635663 CTCGATTCCACCACCGCAAC 61.636 60.000 0.00 0.00 0.00 4.17
395 396 1.375396 CTCGATTCCACCACCGCAA 60.375 57.895 0.00 0.00 0.00 4.85
396 397 2.264480 CTCGATTCCACCACCGCA 59.736 61.111 0.00 0.00 0.00 5.69
397 398 3.195698 GCTCGATTCCACCACCGC 61.196 66.667 0.00 0.00 0.00 5.68
398 399 2.885644 CGCTCGATTCCACCACCG 60.886 66.667 0.00 0.00 0.00 4.94
399 400 1.810030 GTCGCTCGATTCCACCACC 60.810 63.158 0.00 0.00 0.00 4.61
400 401 2.158959 CGTCGCTCGATTCCACCAC 61.159 63.158 0.00 0.00 42.86 4.16
401 402 2.180769 CGTCGCTCGATTCCACCA 59.819 61.111 0.00 0.00 42.86 4.17
402 403 2.488355 TCGTCGCTCGATTCCACC 59.512 61.111 0.00 0.00 44.01 4.61
414 415 1.057822 CTTGATTGCGCTGTCGTCG 59.942 57.895 9.73 0.00 38.14 5.12
415 416 1.225854 GCTTGATTGCGCTGTCGTC 60.226 57.895 9.73 0.00 38.14 4.20
416 417 2.863153 GCTTGATTGCGCTGTCGT 59.137 55.556 9.73 0.00 38.14 4.34
424 425 2.504681 CCGTTGCCGCTTGATTGC 60.505 61.111 0.00 0.00 0.00 3.56
425 426 1.442520 CACCGTTGCCGCTTGATTG 60.443 57.895 0.00 0.00 0.00 2.67
426 427 1.169661 TTCACCGTTGCCGCTTGATT 61.170 50.000 0.00 0.00 0.00 2.57
427 428 1.169661 TTTCACCGTTGCCGCTTGAT 61.170 50.000 0.00 0.00 0.00 2.57
428 429 1.169661 ATTTCACCGTTGCCGCTTGA 61.170 50.000 0.00 0.00 0.00 3.02
429 430 0.729140 GATTTCACCGTTGCCGCTTG 60.729 55.000 0.00 0.00 0.00 4.01
430 431 1.579429 GATTTCACCGTTGCCGCTT 59.421 52.632 0.00 0.00 0.00 4.68
431 432 2.677003 CGATTTCACCGTTGCCGCT 61.677 57.895 0.00 0.00 0.00 5.52
432 433 2.202298 CGATTTCACCGTTGCCGC 60.202 61.111 0.00 0.00 0.00 6.53
433 434 1.419922 CTCGATTTCACCGTTGCCG 59.580 57.895 0.00 0.00 0.00 5.69
434 435 1.134694 GCTCGATTTCACCGTTGCC 59.865 57.895 0.00 0.00 0.00 4.52
435 436 1.225745 CGCTCGATTTCACCGTTGC 60.226 57.895 0.00 0.00 0.00 4.17
436 437 1.419922 CCGCTCGATTTCACCGTTG 59.580 57.895 0.00 0.00 0.00 4.10
437 438 2.388232 GCCGCTCGATTTCACCGTT 61.388 57.895 0.00 0.00 0.00 4.44
438 439 2.813908 GCCGCTCGATTTCACCGT 60.814 61.111 0.00 0.00 0.00 4.83
439 440 3.913573 CGCCGCTCGATTTCACCG 61.914 66.667 0.00 0.00 41.67 4.94
440 441 3.564027 CCGCCGCTCGATTTCACC 61.564 66.667 0.00 0.00 41.67 4.02
441 442 4.223964 GCCGCCGCTCGATTTCAC 62.224 66.667 0.00 0.00 41.67 3.18
467 468 1.288752 CCCACACAACGAATTGGGC 59.711 57.895 0.00 0.00 43.67 5.36
471 472 1.460273 GCCACCCCACACAACGAATT 61.460 55.000 0.00 0.00 0.00 2.17
474 475 4.920112 CGCCACCCCACACAACGA 62.920 66.667 0.00 0.00 0.00 3.85
487 488 3.885538 TTTCGATCGTTGGCCGCCA 62.886 57.895 15.94 8.43 36.19 5.69
495 496 3.007070 GCGCCACGTTTCGATCGTT 62.007 57.895 15.94 0.00 39.55 3.85
496 497 3.475774 GCGCCACGTTTCGATCGT 61.476 61.111 15.94 9.73 42.33 3.73
499 500 1.134487 CATTGCGCCACGTTTCGAT 59.866 52.632 4.18 0.00 0.00 3.59
513 514 2.751436 CACCTCCGCCACCCATTG 60.751 66.667 0.00 0.00 0.00 2.82
607 608 2.127869 CATCTTCTCCTCCCCGCGA 61.128 63.158 8.23 0.00 0.00 5.87
608 609 2.419198 CATCTTCTCCTCCCCGCG 59.581 66.667 0.00 0.00 0.00 6.46
614 615 0.326618 TCCCCACCCATCTTCTCCTC 60.327 60.000 0.00 0.00 0.00 3.71
615 616 0.121197 TTCCCCACCCATCTTCTCCT 59.879 55.000 0.00 0.00 0.00 3.69
617 618 0.548510 CCTTCCCCACCCATCTTCTC 59.451 60.000 0.00 0.00 0.00 2.87
636 639 2.161609 CCGCCAACTACTGTTCCATTTC 59.838 50.000 0.00 0.00 33.52 2.17
646 649 1.019278 CGCATCAACCGCCAACTACT 61.019 55.000 0.00 0.00 0.00 2.57
661 664 0.808125 TAAAAATGGCAGTCGCGCAT 59.192 45.000 8.75 0.00 39.92 4.73
662 665 0.109964 GTAAAAATGGCAGTCGCGCA 60.110 50.000 8.75 0.00 39.92 6.09
668 671 5.106555 CGACTGAAGATGTAAAAATGGCAGT 60.107 40.000 0.00 0.00 36.85 4.40
674 677 5.245531 TCTGCCGACTGAAGATGTAAAAAT 58.754 37.500 0.00 0.00 0.00 1.82
695 698 5.437289 TCACGTTGAAAATTTGCATCTCT 57.563 34.783 0.00 0.00 0.00 3.10
709 712 2.831685 AATACAGCACCTCACGTTGA 57.168 45.000 0.00 0.00 0.00 3.18
715 718 4.941263 GGACATGTAAAATACAGCACCTCA 59.059 41.667 0.00 0.00 42.77 3.86
716 719 4.034048 CGGACATGTAAAATACAGCACCTC 59.966 45.833 0.00 0.00 42.77 3.85
722 725 4.809426 GTCTCCCGGACATGTAAAATACAG 59.191 45.833 0.73 0.00 43.94 2.74
735 738 2.054232 TACATCTCTGTCTCCCGGAC 57.946 55.000 0.73 0.00 44.70 4.79
740 743 7.094634 TGCAAAAGATTTTACATCTCTGTCTCC 60.095 37.037 0.00 0.00 36.79 3.71
741 744 7.810658 TGCAAAAGATTTTACATCTCTGTCTC 58.189 34.615 0.00 0.00 36.79 3.36
779 782 1.831290 GCCCCAAAACCCCTCTTCAAT 60.831 52.381 0.00 0.00 0.00 2.57
783 786 0.267658 AAAGCCCCAAAACCCCTCTT 59.732 50.000 0.00 0.00 0.00 2.85
791 794 2.045524 TGCATCTTCAAAGCCCCAAAA 58.954 42.857 0.00 0.00 0.00 2.44
795 798 1.066645 CCTTTGCATCTTCAAAGCCCC 60.067 52.381 9.92 0.00 47.00 5.80
815 818 8.016229 CACTATGTCGATGTCTGGTATTAGTAC 58.984 40.741 0.00 0.00 0.00 2.73
817 820 6.546403 ACACTATGTCGATGTCTGGTATTAGT 59.454 38.462 0.00 0.00 0.00 2.24
818 821 6.971602 ACACTATGTCGATGTCTGGTATTAG 58.028 40.000 0.00 0.00 0.00 1.73
819 822 6.954487 ACACTATGTCGATGTCTGGTATTA 57.046 37.500 0.00 0.00 0.00 0.98
820 823 5.833082 GACACTATGTCGATGTCTGGTATT 58.167 41.667 8.51 0.00 37.67 1.89
821 824 5.440234 GACACTATGTCGATGTCTGGTAT 57.560 43.478 8.51 0.00 37.67 2.73
822 825 4.895224 GACACTATGTCGATGTCTGGTA 57.105 45.455 8.51 0.00 37.67 3.25
823 826 3.784701 GACACTATGTCGATGTCTGGT 57.215 47.619 8.51 0.00 37.67 4.00
837 840 2.623416 CCCTACAGCGATCATGACACTA 59.377 50.000 0.00 0.00 0.00 2.74
838 841 1.410517 CCCTACAGCGATCATGACACT 59.589 52.381 0.00 0.00 0.00 3.55
839 842 1.409064 TCCCTACAGCGATCATGACAC 59.591 52.381 0.00 0.00 0.00 3.67
841 844 2.890808 TTCCCTACAGCGATCATGAC 57.109 50.000 0.00 0.00 0.00 3.06
843 846 3.459232 TCTTTCCCTACAGCGATCATG 57.541 47.619 0.00 0.00 0.00 3.07
844 847 4.487714 TTTCTTTCCCTACAGCGATCAT 57.512 40.909 0.00 0.00 0.00 2.45
861 884 0.946221 CTGCTGGAGCGTCGTTTTCT 60.946 55.000 0.00 0.00 45.83 2.52
862 885 1.493311 CTGCTGGAGCGTCGTTTTC 59.507 57.895 0.00 0.00 45.83 2.29
909 932 7.066645 CCATGACATTGAGATGCTTCTTCTTTA 59.933 37.037 3.29 0.00 36.72 1.85
910 933 6.127703 CCATGACATTGAGATGCTTCTTCTTT 60.128 38.462 3.29 0.00 36.72 2.52
911 934 5.357314 CCATGACATTGAGATGCTTCTTCTT 59.643 40.000 3.29 0.00 36.72 2.52
912 935 4.882427 CCATGACATTGAGATGCTTCTTCT 59.118 41.667 3.29 0.00 36.72 2.85
927 950 2.172505 TCCAATCCTTACGCCATGACAT 59.827 45.455 0.00 0.00 0.00 3.06
1045 1068 5.700183 TCTTCTAGTGCTACTCTGATGGAT 58.300 41.667 0.00 0.00 0.00 3.41
1084 1107 3.182887 TCCTCTTTCTTGCTCTCCTCT 57.817 47.619 0.00 0.00 0.00 3.69
1176 1199 2.626840 GAGAGCCAGATCGCTTTTCTT 58.373 47.619 0.00 0.00 39.87 2.52
1267 1290 1.338020 GAAGTCTTGGGCACTGGTTTG 59.662 52.381 0.00 0.00 0.00 2.93
1367 1390 2.034066 CCAACCTGCCATGGACGT 59.966 61.111 18.40 4.24 39.12 4.34
1370 1393 0.548031 GATCTCCAACCTGCCATGGA 59.452 55.000 18.40 0.00 43.32 3.41
1488 1511 2.034053 GTCGTCCATGCAAGGAACAAAA 59.966 45.455 13.20 0.00 39.92 2.44
1497 1520 0.460109 CGGATGAGTCGTCCATGCAA 60.460 55.000 27.27 0.00 39.36 4.08
1498 1521 1.141665 CGGATGAGTCGTCCATGCA 59.858 57.895 27.27 0.00 39.36 3.96
1539 1562 8.784043 GCCTACTTAAGAAAGAATCAAACTCAA 58.216 33.333 10.09 0.00 36.50 3.02
1540 1563 7.936847 TGCCTACTTAAGAAAGAATCAAACTCA 59.063 33.333 10.09 0.00 36.50 3.41
1541 1564 8.231161 GTGCCTACTTAAGAAAGAATCAAACTC 58.769 37.037 10.09 0.00 36.50 3.01
1542 1565 7.939588 AGTGCCTACTTAAGAAAGAATCAAACT 59.060 33.333 10.09 2.56 36.50 2.66
1684 4822 3.181511 TGTCGCACATATTACTTGCTTGC 60.182 43.478 0.00 0.00 33.90 4.01
1714 4862 6.413892 TGAAGAATGTCACCTGCATACATTA 58.586 36.000 13.55 1.09 42.35 1.90
1715 4863 5.255687 TGAAGAATGTCACCTGCATACATT 58.744 37.500 13.48 13.48 44.35 2.71
1795 4947 0.179067 TGGAAGAAGTGAAACGCGGT 60.179 50.000 12.47 0.00 45.86 5.68
1851 5003 0.036671 GGTAGGGGAACTTCACCACG 60.037 60.000 12.83 0.00 44.30 4.94
2008 5166 2.164219 GAGCGGAAATTTGATCCTTGCA 59.836 45.455 0.00 0.00 34.66 4.08
2118 5276 3.371063 GTCGTGGAGTCTGGCGGA 61.371 66.667 0.00 0.00 0.00 5.54
2150 5308 4.243008 TGCGTCGGAAGTTGGCCA 62.243 61.111 0.00 0.00 0.00 5.36
2562 5723 2.875094 ACTCCTTGAGAATTGCAGCT 57.125 45.000 0.00 0.00 33.32 4.24
2648 5809 6.966534 ATCATTGGACAGAAATAATGGACC 57.033 37.500 0.00 0.00 0.00 4.46
2649 5810 9.090692 CAAAATCATTGGACAGAAATAATGGAC 57.909 33.333 0.00 0.00 0.00 4.02
2665 5826 7.868922 TCTCCATCAAGTGAAACAAAATCATTG 59.131 33.333 0.00 0.00 41.43 2.82
2734 5895 3.199727 TGGCTAAACACCTGAGCATATCA 59.800 43.478 0.00 0.00 37.98 2.15
2866 6027 8.440833 GCACGGGTAATTTTTGCTAGTATATAG 58.559 37.037 0.00 0.00 0.00 1.31
2867 6028 7.116662 CGCACGGGTAATTTTTGCTAGTATATA 59.883 37.037 0.00 0.00 0.00 0.86
2868 6029 6.073440 CGCACGGGTAATTTTTGCTAGTATAT 60.073 38.462 0.00 0.00 0.00 0.86
2869 6030 5.234757 CGCACGGGTAATTTTTGCTAGTATA 59.765 40.000 0.00 0.00 0.00 1.47
2870 6031 4.034742 CGCACGGGTAATTTTTGCTAGTAT 59.965 41.667 0.00 0.00 0.00 2.12
2871 6032 3.371591 CGCACGGGTAATTTTTGCTAGTA 59.628 43.478 0.00 0.00 0.00 1.82
2872 6033 2.160813 CGCACGGGTAATTTTTGCTAGT 59.839 45.455 0.00 0.00 0.00 2.57
2873 6034 2.160813 ACGCACGGGTAATTTTTGCTAG 59.839 45.455 0.00 0.00 0.00 3.42
2874 6035 2.152830 ACGCACGGGTAATTTTTGCTA 58.847 42.857 0.00 0.00 0.00 3.49
2875 6036 0.955905 ACGCACGGGTAATTTTTGCT 59.044 45.000 0.00 0.00 0.00 3.91
2876 6037 1.453900 CAACGCACGGGTAATTTTTGC 59.546 47.619 0.00 0.00 0.00 3.68
2877 6038 1.453900 GCAACGCACGGGTAATTTTTG 59.546 47.619 0.00 0.00 0.00 2.44
2878 6039 1.067212 TGCAACGCACGGGTAATTTTT 59.933 42.857 0.00 0.00 31.71 1.94
2879 6040 0.669077 TGCAACGCACGGGTAATTTT 59.331 45.000 0.00 0.00 31.71 1.82
2880 6041 0.669077 TTGCAACGCACGGGTAATTT 59.331 45.000 0.00 0.00 38.71 1.82
2881 6042 0.039888 GTTGCAACGCACGGGTAATT 60.040 50.000 14.90 0.00 38.71 1.40
2882 6043 1.577421 GTTGCAACGCACGGGTAAT 59.423 52.632 14.90 0.00 38.71 1.89
2883 6044 2.883468 CGTTGCAACGCACGGGTAA 61.883 57.895 35.89 0.00 46.06 2.85
2884 6045 3.339464 CGTTGCAACGCACGGGTA 61.339 61.111 35.89 0.00 46.06 3.69
2907 6068 1.780919 ACTGCTAGGGGGTCTGTTTTT 59.219 47.619 0.00 0.00 0.00 1.94
2908 6069 1.073923 CACTGCTAGGGGGTCTGTTTT 59.926 52.381 0.00 0.00 0.00 2.43
2909 6070 0.693049 CACTGCTAGGGGGTCTGTTT 59.307 55.000 0.00 0.00 0.00 2.83
2910 6071 1.201429 CCACTGCTAGGGGGTCTGTT 61.201 60.000 0.00 0.00 34.26 3.16
2911 6072 1.613630 CCACTGCTAGGGGGTCTGT 60.614 63.158 0.00 0.00 34.26 3.41
2912 6073 3.036429 GCCACTGCTAGGGGGTCTG 62.036 68.421 6.58 0.00 39.88 3.51
2913 6074 2.689034 GCCACTGCTAGGGGGTCT 60.689 66.667 6.58 0.00 39.88 3.85
2914 6075 4.162690 CGCCACTGCTAGGGGGTC 62.163 72.222 6.58 0.00 39.88 4.46
2917 6078 3.854669 CTCCGCCACTGCTAGGGG 61.855 72.222 0.48 0.48 43.37 4.79
2918 6079 4.537433 GCTCCGCCACTGCTAGGG 62.537 72.222 0.00 0.00 34.43 3.53
2919 6080 2.527951 AAAGCTCCGCCACTGCTAGG 62.528 60.000 0.00 0.00 35.85 3.02
2920 6081 1.078848 AAAGCTCCGCCACTGCTAG 60.079 57.895 0.00 0.00 35.85 3.42
2921 6082 1.375908 CAAAGCTCCGCCACTGCTA 60.376 57.895 0.00 0.00 35.85 3.49
2922 6083 2.670934 CAAAGCTCCGCCACTGCT 60.671 61.111 0.00 0.00 38.87 4.24
2923 6084 2.980233 ACAAAGCTCCGCCACTGC 60.980 61.111 0.00 0.00 0.00 4.40
2924 6085 2.620112 CCACAAAGCTCCGCCACTG 61.620 63.158 0.00 0.00 0.00 3.66
2925 6086 2.281761 CCACAAAGCTCCGCCACT 60.282 61.111 0.00 0.00 0.00 4.00
2926 6087 2.281484 TCCACAAAGCTCCGCCAC 60.281 61.111 0.00 0.00 0.00 5.01
2927 6088 2.032528 CTCCACAAAGCTCCGCCA 59.967 61.111 0.00 0.00 0.00 5.69
2928 6089 1.743252 CTCTCCACAAAGCTCCGCC 60.743 63.158 0.00 0.00 0.00 6.13
2929 6090 2.394563 GCTCTCCACAAAGCTCCGC 61.395 63.158 0.00 0.00 35.60 5.54
2930 6091 0.603707 TTGCTCTCCACAAAGCTCCG 60.604 55.000 0.00 0.00 39.31 4.63
2931 6092 0.877743 GTTGCTCTCCACAAAGCTCC 59.122 55.000 0.00 0.00 39.31 4.70
2932 6093 0.877743 GGTTGCTCTCCACAAAGCTC 59.122 55.000 0.00 0.00 39.31 4.09
2933 6094 0.475906 AGGTTGCTCTCCACAAAGCT 59.524 50.000 0.00 0.00 39.31 3.74
2934 6095 0.595095 CAGGTTGCTCTCCACAAAGC 59.405 55.000 0.00 0.00 39.02 3.51
2935 6096 1.242076 CCAGGTTGCTCTCCACAAAG 58.758 55.000 0.00 0.00 0.00 2.77
2936 6097 0.178992 CCCAGGTTGCTCTCCACAAA 60.179 55.000 0.00 0.00 0.00 2.83
2937 6098 1.455849 CCCAGGTTGCTCTCCACAA 59.544 57.895 0.00 0.00 0.00 3.33
2938 6099 3.160585 CCCAGGTTGCTCTCCACA 58.839 61.111 0.00 0.00 0.00 4.17
2939 6100 2.360475 GCCCAGGTTGCTCTCCAC 60.360 66.667 0.00 0.00 0.00 4.02
2940 6101 3.650950 GGCCCAGGTTGCTCTCCA 61.651 66.667 0.00 0.00 0.00 3.86
2941 6102 2.505364 AATGGCCCAGGTTGCTCTCC 62.505 60.000 0.00 0.00 0.00 3.71
2942 6103 1.000396 AATGGCCCAGGTTGCTCTC 60.000 57.895 0.00 0.00 0.00 3.20
2943 6104 1.304713 CAATGGCCCAGGTTGCTCT 60.305 57.895 0.00 0.00 0.00 4.09
2944 6105 3.010413 GCAATGGCCCAGGTTGCTC 62.010 63.158 13.58 0.00 43.56 4.26
2945 6106 2.999063 GCAATGGCCCAGGTTGCT 60.999 61.111 13.58 0.00 43.56 3.91
2964 6125 0.409484 ACTTTCTCATGGGTTGGGGG 59.591 55.000 0.00 0.00 0.00 5.40
2965 6126 2.309136 AACTTTCTCATGGGTTGGGG 57.691 50.000 0.00 0.00 0.00 4.96
2966 6127 2.755103 GCTAACTTTCTCATGGGTTGGG 59.245 50.000 0.00 0.00 0.00 4.12
2967 6128 3.420893 TGCTAACTTTCTCATGGGTTGG 58.579 45.455 0.00 0.00 0.00 3.77
2968 6129 5.452078 TTTGCTAACTTTCTCATGGGTTG 57.548 39.130 0.00 0.00 0.00 3.77
2969 6130 7.068716 GGATATTTGCTAACTTTCTCATGGGTT 59.931 37.037 0.00 0.00 0.00 4.11
2970 6131 6.547510 GGATATTTGCTAACTTTCTCATGGGT 59.452 38.462 0.00 0.00 0.00 4.51
2971 6132 6.015940 GGGATATTTGCTAACTTTCTCATGGG 60.016 42.308 0.00 0.00 0.00 4.00
2972 6133 6.015940 GGGGATATTTGCTAACTTTCTCATGG 60.016 42.308 0.00 0.00 0.00 3.66
2973 6134 6.774656 AGGGGATATTTGCTAACTTTCTCATG 59.225 38.462 0.00 0.00 0.00 3.07
2974 6135 6.915786 AGGGGATATTTGCTAACTTTCTCAT 58.084 36.000 0.00 0.00 0.00 2.90
2975 6136 6.327386 AGGGGATATTTGCTAACTTTCTCA 57.673 37.500 0.00 0.00 0.00 3.27
2976 6137 7.510407 ACTAGGGGATATTTGCTAACTTTCTC 58.490 38.462 0.00 0.00 0.00 2.87
2977 6138 7.453141 ACTAGGGGATATTTGCTAACTTTCT 57.547 36.000 0.00 0.00 0.00 2.52
2978 6139 9.794719 AATACTAGGGGATATTTGCTAACTTTC 57.205 33.333 0.00 0.00 0.00 2.62
2979 6140 9.794719 GAATACTAGGGGATATTTGCTAACTTT 57.205 33.333 0.00 0.00 0.00 2.66
2980 6141 8.945193 TGAATACTAGGGGATATTTGCTAACTT 58.055 33.333 0.00 0.00 0.00 2.66
2981 6142 8.506196 TGAATACTAGGGGATATTTGCTAACT 57.494 34.615 0.00 0.00 0.00 2.24
2982 6143 7.334671 GCTGAATACTAGGGGATATTTGCTAAC 59.665 40.741 0.00 0.00 0.00 2.34
2983 6144 7.394816 GCTGAATACTAGGGGATATTTGCTAA 58.605 38.462 0.00 0.00 0.00 3.09
2984 6145 6.070194 GGCTGAATACTAGGGGATATTTGCTA 60.070 42.308 0.00 0.00 0.00 3.49
2985 6146 5.280727 GGCTGAATACTAGGGGATATTTGCT 60.281 44.000 0.00 0.00 0.00 3.91
2986 6147 4.944317 GGCTGAATACTAGGGGATATTTGC 59.056 45.833 0.00 0.00 0.00 3.68
2987 6148 5.014123 TGGGCTGAATACTAGGGGATATTTG 59.986 44.000 0.00 0.00 0.00 2.32
2988 6149 5.170198 TGGGCTGAATACTAGGGGATATTT 58.830 41.667 0.00 0.00 0.00 1.40
2989 6150 4.774779 TGGGCTGAATACTAGGGGATATT 58.225 43.478 0.00 0.00 0.00 1.28
2990 6151 4.435977 TGGGCTGAATACTAGGGGATAT 57.564 45.455 0.00 0.00 0.00 1.63
2991 6152 3.935240 TGGGCTGAATACTAGGGGATA 57.065 47.619 0.00 0.00 0.00 2.59
2992 6153 2.815357 TGGGCTGAATACTAGGGGAT 57.185 50.000 0.00 0.00 0.00 3.85
2993 6154 2.815357 ATGGGCTGAATACTAGGGGA 57.185 50.000 0.00 0.00 0.00 4.81
2994 6155 3.846588 ACATATGGGCTGAATACTAGGGG 59.153 47.826 7.80 0.00 0.00 4.79
2995 6156 4.382040 CGACATATGGGCTGAATACTAGGG 60.382 50.000 7.80 0.00 0.00 3.53
2996 6157 4.462834 TCGACATATGGGCTGAATACTAGG 59.537 45.833 7.80 0.00 0.00 3.02
2997 6158 5.184096 ACTCGACATATGGGCTGAATACTAG 59.816 44.000 7.80 0.00 0.00 2.57
2998 6159 5.077564 ACTCGACATATGGGCTGAATACTA 58.922 41.667 7.80 0.00 0.00 1.82
2999 6160 3.898123 ACTCGACATATGGGCTGAATACT 59.102 43.478 7.80 0.00 0.00 2.12
3000 6161 4.258702 ACTCGACATATGGGCTGAATAC 57.741 45.455 7.80 0.00 0.00 1.89
3001 6162 4.955811 AACTCGACATATGGGCTGAATA 57.044 40.909 7.80 0.00 0.00 1.75
3002 6163 3.845781 AACTCGACATATGGGCTGAAT 57.154 42.857 7.80 0.00 0.00 2.57
3003 6164 4.746535 TTAACTCGACATATGGGCTGAA 57.253 40.909 7.80 0.00 0.00 3.02
3004 6165 4.746535 TTTAACTCGACATATGGGCTGA 57.253 40.909 7.80 0.00 0.00 4.26
3005 6166 5.527214 TGATTTTAACTCGACATATGGGCTG 59.473 40.000 7.80 0.00 0.00 4.85
3006 6167 5.680619 TGATTTTAACTCGACATATGGGCT 58.319 37.500 7.80 0.00 0.00 5.19
3007 6168 5.560953 GCTGATTTTAACTCGACATATGGGC 60.561 44.000 7.80 0.00 0.00 5.36
3008 6169 5.049405 GGCTGATTTTAACTCGACATATGGG 60.049 44.000 7.80 0.00 0.00 4.00
3009 6170 5.049405 GGGCTGATTTTAACTCGACATATGG 60.049 44.000 7.80 0.00 0.00 2.74
3010 6171 5.527214 TGGGCTGATTTTAACTCGACATATG 59.473 40.000 0.00 0.00 0.00 1.78
3011 6172 5.680619 TGGGCTGATTTTAACTCGACATAT 58.319 37.500 0.00 0.00 0.00 1.78
3012 6173 5.092554 TGGGCTGATTTTAACTCGACATA 57.907 39.130 0.00 0.00 0.00 2.29
3013 6174 3.950397 TGGGCTGATTTTAACTCGACAT 58.050 40.909 0.00 0.00 0.00 3.06
3014 6175 3.410631 TGGGCTGATTTTAACTCGACA 57.589 42.857 0.00 0.00 0.00 4.35
3015 6176 4.759516 TTTGGGCTGATTTTAACTCGAC 57.240 40.909 0.00 0.00 0.00 4.20
3016 6177 4.320935 GCTTTTGGGCTGATTTTAACTCGA 60.321 41.667 0.00 0.00 0.00 4.04
3017 6178 3.920412 GCTTTTGGGCTGATTTTAACTCG 59.080 43.478 0.00 0.00 0.00 4.18
3018 6179 4.881920 TGCTTTTGGGCTGATTTTAACTC 58.118 39.130 0.00 0.00 0.00 3.01
3019 6180 4.953940 TGCTTTTGGGCTGATTTTAACT 57.046 36.364 0.00 0.00 0.00 2.24
3020 6181 4.996758 ACATGCTTTTGGGCTGATTTTAAC 59.003 37.500 0.00 0.00 0.00 2.01
3021 6182 5.226194 ACATGCTTTTGGGCTGATTTTAA 57.774 34.783 0.00 0.00 0.00 1.52
3022 6183 4.888326 ACATGCTTTTGGGCTGATTTTA 57.112 36.364 0.00 0.00 0.00 1.52
3023 6184 3.775261 ACATGCTTTTGGGCTGATTTT 57.225 38.095 0.00 0.00 0.00 1.82
3024 6185 3.775261 AACATGCTTTTGGGCTGATTT 57.225 38.095 0.00 0.00 0.00 2.17
3025 6186 3.325716 AGAAACATGCTTTTGGGCTGATT 59.674 39.130 0.00 0.00 0.00 2.57
3026 6187 2.901839 AGAAACATGCTTTTGGGCTGAT 59.098 40.909 0.00 0.00 0.00 2.90
3027 6188 2.318908 AGAAACATGCTTTTGGGCTGA 58.681 42.857 0.00 0.00 0.00 4.26
3028 6189 2.803956 CAAGAAACATGCTTTTGGGCTG 59.196 45.455 0.00 0.00 0.00 4.85
3029 6190 2.807837 GCAAGAAACATGCTTTTGGGCT 60.808 45.455 0.00 0.00 40.64 5.19
3030 6191 1.532437 GCAAGAAACATGCTTTTGGGC 59.468 47.619 0.00 0.00 40.64 5.36
3031 6192 2.145536 GGCAAGAAACATGCTTTTGGG 58.854 47.619 0.00 0.00 43.34 4.12
3032 6193 2.145536 GGGCAAGAAACATGCTTTTGG 58.854 47.619 0.00 0.00 43.34 3.28
3033 6194 2.145536 GGGGCAAGAAACATGCTTTTG 58.854 47.619 0.00 0.00 43.34 2.44
3034 6195 2.037641 GAGGGGCAAGAAACATGCTTTT 59.962 45.455 0.00 0.00 43.34 2.27
3035 6196 1.620323 GAGGGGCAAGAAACATGCTTT 59.380 47.619 0.00 0.00 43.34 3.51
3036 6197 1.260544 GAGGGGCAAGAAACATGCTT 58.739 50.000 0.00 0.00 43.34 3.91
3037 6198 0.613012 GGAGGGGCAAGAAACATGCT 60.613 55.000 0.00 0.00 43.34 3.79
3038 6199 0.899717 TGGAGGGGCAAGAAACATGC 60.900 55.000 0.00 0.00 43.08 4.06
3039 6200 1.180029 CTGGAGGGGCAAGAAACATG 58.820 55.000 0.00 0.00 0.00 3.21
3040 6201 0.613012 GCTGGAGGGGCAAGAAACAT 60.613 55.000 0.00 0.00 0.00 2.71
3041 6202 1.228552 GCTGGAGGGGCAAGAAACA 60.229 57.895 0.00 0.00 0.00 2.83
3042 6203 1.979155 GGCTGGAGGGGCAAGAAAC 60.979 63.158 0.00 0.00 0.00 2.78
3043 6204 2.440599 GGCTGGAGGGGCAAGAAA 59.559 61.111 0.00 0.00 0.00 2.52
3044 6205 3.661648 GGGCTGGAGGGGCAAGAA 61.662 66.667 0.00 0.00 0.00 2.52
3046 6207 2.810488 AAATGGGCTGGAGGGGCAAG 62.810 60.000 0.00 0.00 0.00 4.01
3047 6208 2.867508 AAATGGGCTGGAGGGGCAA 61.868 57.895 0.00 0.00 0.00 4.52
3048 6209 3.275271 AAATGGGCTGGAGGGGCA 61.275 61.111 0.00 0.00 0.00 5.36
3049 6210 2.761213 CAAATGGGCTGGAGGGGC 60.761 66.667 0.00 0.00 0.00 5.80
3050 6211 2.761213 GCAAATGGGCTGGAGGGG 60.761 66.667 0.00 0.00 0.00 4.79
3051 6212 2.761213 GGCAAATGGGCTGGAGGG 60.761 66.667 0.00 0.00 39.42 4.30
3052 6213 2.761213 GGGCAAATGGGCTGGAGG 60.761 66.667 0.00 0.00 42.84 4.30
3053 6214 2.761213 GGGGCAAATGGGCTGGAG 60.761 66.667 0.00 0.00 42.84 3.86
3054 6215 3.275271 AGGGGCAAATGGGCTGGA 61.275 61.111 0.00 0.00 42.84 3.86
3055 6216 2.761213 GAGGGGCAAATGGGCTGG 60.761 66.667 0.00 0.00 42.84 4.85
3056 6217 2.761213 GGAGGGGCAAATGGGCTG 60.761 66.667 0.00 0.00 42.84 4.85
3057 6218 1.295915 TATGGAGGGGCAAATGGGCT 61.296 55.000 0.00 0.00 42.84 5.19
3058 6219 0.398381 TTATGGAGGGGCAAATGGGC 60.398 55.000 0.00 0.00 42.44 5.36
3059 6220 2.173126 TTTATGGAGGGGCAAATGGG 57.827 50.000 0.00 0.00 0.00 4.00
3060 6221 3.710677 TGAATTTATGGAGGGGCAAATGG 59.289 43.478 0.00 0.00 0.00 3.16
3061 6222 4.741536 GCTGAATTTATGGAGGGGCAAATG 60.742 45.833 0.00 0.00 0.00 2.32
3062 6223 3.389002 GCTGAATTTATGGAGGGGCAAAT 59.611 43.478 0.00 0.00 0.00 2.32
3063 6224 2.765699 GCTGAATTTATGGAGGGGCAAA 59.234 45.455 0.00 0.00 0.00 3.68
3064 6225 2.387757 GCTGAATTTATGGAGGGGCAA 58.612 47.619 0.00 0.00 0.00 4.52
3065 6226 1.411501 GGCTGAATTTATGGAGGGGCA 60.412 52.381 0.00 0.00 0.00 5.36
3066 6227 1.332195 GGCTGAATTTATGGAGGGGC 58.668 55.000 0.00 0.00 0.00 5.80
3067 6228 1.217689 TGGGCTGAATTTATGGAGGGG 59.782 52.381 0.00 0.00 0.00 4.79
3068 6229 2.754012 TGGGCTGAATTTATGGAGGG 57.246 50.000 0.00 0.00 0.00 4.30
3069 6230 2.363359 GCTTGGGCTGAATTTATGGAGG 59.637 50.000 0.00 0.00 35.22 4.30
3070 6231 3.722728 GCTTGGGCTGAATTTATGGAG 57.277 47.619 0.00 0.00 35.22 3.86
3093 6254 4.162690 GACTAGGGGGCAGTGGCG 62.163 72.222 10.99 0.00 42.47 5.69
3094 6255 3.798511 GGACTAGGGGGCAGTGGC 61.799 72.222 8.47 8.47 40.13 5.01
3095 6256 1.497309 TTTGGACTAGGGGGCAGTGG 61.497 60.000 0.00 0.00 0.00 4.00
3096 6257 0.035056 CTTTGGACTAGGGGGCAGTG 60.035 60.000 0.00 0.00 0.00 3.66
3097 6258 1.208165 CCTTTGGACTAGGGGGCAGT 61.208 60.000 0.00 0.00 0.00 4.40
3098 6259 1.208165 ACCTTTGGACTAGGGGGCAG 61.208 60.000 0.00 0.00 37.09 4.85
3099 6260 0.119561 TACCTTTGGACTAGGGGGCA 59.880 55.000 0.00 0.00 37.09 5.36
3100 6261 0.545171 GTACCTTTGGACTAGGGGGC 59.455 60.000 0.00 0.00 37.09 5.80
3118 6279 1.180029 GGAGCATGATGTGGCTTTGT 58.820 50.000 0.00 0.00 41.22 2.83
3122 6283 0.534427 CGATGGAGCATGATGTGGCT 60.534 55.000 0.00 0.00 44.48 4.75
3123 6284 1.947013 CGATGGAGCATGATGTGGC 59.053 57.895 0.00 0.00 0.00 5.01
3203 6364 2.676342 GCTTCCCGAAATGTATGAACGT 59.324 45.455 0.00 0.00 0.00 3.99
3210 6371 1.208535 ACCGATGCTTCCCGAAATGTA 59.791 47.619 0.00 0.00 0.00 2.29
3219 6380 1.859080 GTCGATAACACCGATGCTTCC 59.141 52.381 0.00 0.00 38.38 3.46
3264 6428 9.753674 TTTTCAAGATACCATTTCCAATCTACT 57.246 29.630 0.00 0.00 0.00 2.57
3267 6431 7.178983 TGCTTTTCAAGATACCATTTCCAATCT 59.821 33.333 0.00 0.00 0.00 2.40
3268 6432 7.322664 TGCTTTTCAAGATACCATTTCCAATC 58.677 34.615 0.00 0.00 0.00 2.67
3269 6433 7.243604 TGCTTTTCAAGATACCATTTCCAAT 57.756 32.000 0.00 0.00 0.00 3.16
3367 6720 8.582437 TGAGTCCCGTTTATTTAGATGTATAGG 58.418 37.037 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.