Multiple sequence alignment - TraesCS4A01G473300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G473300 chr4A 100.000 4784 0 0 1 4784 733424532 733419749 0.000000e+00 8835.0
1 TraesCS4A01G473300 chr4A 90.142 2739 260 6 1327 4063 733452570 733455300 0.000000e+00 3554.0
2 TraesCS4A01G473300 chr4A 86.368 1071 87 29 490 1554 733451852 733452869 0.000000e+00 1114.0
3 TraesCS4A01G473300 chr4A 94.318 88 4 1 4484 4571 733600301 733600387 3.000000e-27 134.0
4 TraesCS4A01G473300 chr4A 100.000 40 0 0 4745 4784 711637937 711637898 1.850000e-09 75.0
5 TraesCS4A01G473300 chr4A 78.571 126 16 5 355 471 727061954 727062077 6.640000e-09 73.1
6 TraesCS4A01G473300 chr7D 91.448 3169 222 25 1327 4487 6779929 6783056 0.000000e+00 4305.0
7 TraesCS4A01G473300 chr7D 88.525 1647 131 21 1 1620 6778679 6780294 0.000000e+00 1941.0
8 TraesCS4A01G473300 chr7D 81.284 1480 197 45 2761 4184 101096292 101094837 0.000000e+00 1125.0
9 TraesCS4A01G473300 chr7D 88.435 147 7 5 4501 4639 6783036 6783180 8.230000e-38 169.0
10 TraesCS4A01G473300 chr7D 85.057 87 9 2 4486 4572 576746175 576746257 8.530000e-13 86.1
11 TraesCS4A01G473300 chr7D 97.143 35 0 1 437 471 256281983 256281950 1.860000e-04 58.4
12 TraesCS4A01G473300 chr7D 96.970 33 0 1 4487 4519 23687856 23687825 2.000000e-03 54.7
13 TraesCS4A01G473300 chr7A 89.711 3256 295 22 1327 4571 7765869 7769095 0.000000e+00 4120.0
14 TraesCS4A01G473300 chr7A 88.694 1654 137 24 1 1626 7764609 7766240 0.000000e+00 1973.0
15 TraesCS4A01G473300 chr7A 81.187 1483 197 46 2761 4184 103216078 103214619 0.000000e+00 1118.0
16 TraesCS4A01G473300 chrUn 90.595 2435 221 4 1630 4063 339774475 339776902 0.000000e+00 3221.0
17 TraesCS4A01G473300 chrUn 90.554 2435 222 4 1630 4063 339771814 339769387 0.000000e+00 3216.0
18 TraesCS4A01G473300 chrUn 91.667 1704 140 1 1630 3333 378061079 378062780 0.000000e+00 2359.0
19 TraesCS4A01G473300 chrUn 90.404 1657 157 2 1327 2982 334535807 334534152 0.000000e+00 2178.0
20 TraesCS4A01G473300 chrUn 91.648 1353 113 0 1630 2982 408507537 408506185 0.000000e+00 1873.0
21 TraesCS4A01G473300 chrUn 86.461 1071 86 29 490 1554 334536525 334535508 0.000000e+00 1120.0
22 TraesCS4A01G473300 chrUn 88.329 814 89 3 3251 4063 464059170 464058362 0.000000e+00 972.0
23 TraesCS4A01G473300 chrUn 89.884 692 66 1 3335 4026 467116536 467115849 0.000000e+00 887.0
24 TraesCS4A01G473300 chrUn 100.000 40 0 0 4745 4784 120173997 120173958 1.850000e-09 75.0
25 TraesCS4A01G473300 chr7B 80.719 1307 244 7 1471 2773 57635910 57634608 0.000000e+00 1011.0
26 TraesCS4A01G473300 chr7B 82.791 1075 142 26 3130 4184 57634143 57633092 0.000000e+00 920.0
27 TraesCS4A01G473300 chr7B 92.727 55 4 0 5 59 93313674 93313620 3.970000e-11 80.5
28 TraesCS4A01G473300 chr4B 84.821 112 12 3 247 355 142517682 142517573 1.820000e-19 108.0
29 TraesCS4A01G473300 chr4B 83.186 113 16 3 246 355 191237190 191237078 3.050000e-17 100.0
30 TraesCS4A01G473300 chr4B 92.982 57 4 0 5 61 467460556 467460500 3.070000e-12 84.2
31 TraesCS4A01G473300 chr4B 94.118 51 3 0 4734 4784 72900653 72900703 1.430000e-10 78.7
32 TraesCS4A01G473300 chr4B 100.000 40 0 0 4745 4784 620945087 620945126 1.850000e-09 75.0
33 TraesCS4A01G473300 chr2A 83.929 112 14 3 247 355 691758550 691758440 2.360000e-18 104.0
34 TraesCS4A01G473300 chr2A 100.000 40 0 0 4745 4784 81241191 81241230 1.850000e-09 75.0
35 TraesCS4A01G473300 chr6B 85.294 102 12 2 256 355 116425309 116425409 8.470000e-18 102.0
36 TraesCS4A01G473300 chr6B 97.561 41 1 0 4744 4784 151214647 151214687 2.390000e-08 71.3
37 TraesCS4A01G473300 chr6B 94.737 38 1 1 4486 4523 125342896 125342932 1.860000e-04 58.4
38 TraesCS4A01G473300 chr6A 82.727 110 15 3 247 353 26529150 26529042 1.420000e-15 95.3
39 TraesCS4A01G473300 chr6A 82.143 112 16 3 247 355 23972129 23972019 5.100000e-15 93.5
40 TraesCS4A01G473300 chr6A 90.000 60 4 2 5 63 187738748 187738690 5.130000e-10 76.8
41 TraesCS4A01G473300 chr6A 100.000 30 0 0 442 471 458541176 458541147 6.690000e-04 56.5
42 TraesCS4A01G473300 chr1B 83.333 102 13 2 256 355 44235072 44235171 1.830000e-14 91.6
43 TraesCS4A01G473300 chr1B 78.788 132 10 10 356 471 172250372 172250501 6.640000e-09 73.1
44 TraesCS4A01G473300 chr4D 91.228 57 5 0 5 61 380282013 380281957 1.430000e-10 78.7
45 TraesCS4A01G473300 chr5B 92.593 54 3 1 3884 3936 386539510 386539457 5.130000e-10 76.8
46 TraesCS4A01G473300 chr5D 97.674 43 1 0 4742 4784 447714697 447714655 1.850000e-09 75.0
47 TraesCS4A01G473300 chr2D 100.000 40 0 0 4745 4784 294600486 294600525 1.850000e-09 75.0
48 TraesCS4A01G473300 chr2D 94.444 36 2 0 436 471 119181122 119181157 6.690000e-04 56.5
49 TraesCS4A01G473300 chr5A 78.740 127 14 11 355 471 79278931 79279054 6.640000e-09 73.1
50 TraesCS4A01G473300 chr3B 97.619 42 0 1 4743 4783 247066670 247066711 2.390000e-08 71.3
51 TraesCS4A01G473300 chr3D 93.478 46 3 0 4 49 63397342 63397297 8.590000e-08 69.4
52 TraesCS4A01G473300 chr3D 97.222 36 0 1 436 471 501080537 501080503 5.170000e-05 60.2
53 TraesCS4A01G473300 chr3A 86.364 66 6 3 4 67 19358522 19358458 8.590000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G473300 chr4A 733419749 733424532 4783 True 8835.000000 8835 100.000000 1 4784 1 chr4A.!!$R2 4783
1 TraesCS4A01G473300 chr4A 733451852 733455300 3448 False 2334.000000 3554 88.255000 490 4063 2 chr4A.!!$F3 3573
2 TraesCS4A01G473300 chr7D 6778679 6783180 4501 False 2138.333333 4305 89.469333 1 4639 3 chr7D.!!$F2 4638
3 TraesCS4A01G473300 chr7D 101094837 101096292 1455 True 1125.000000 1125 81.284000 2761 4184 1 chr7D.!!$R2 1423
4 TraesCS4A01G473300 chr7A 7764609 7769095 4486 False 3046.500000 4120 89.202500 1 4571 2 chr7A.!!$F1 4570
5 TraesCS4A01G473300 chr7A 103214619 103216078 1459 True 1118.000000 1118 81.187000 2761 4184 1 chr7A.!!$R1 1423
6 TraesCS4A01G473300 chrUn 339774475 339776902 2427 False 3221.000000 3221 90.595000 1630 4063 1 chrUn.!!$F1 2433
7 TraesCS4A01G473300 chrUn 339769387 339771814 2427 True 3216.000000 3216 90.554000 1630 4063 1 chrUn.!!$R2 2433
8 TraesCS4A01G473300 chrUn 378061079 378062780 1701 False 2359.000000 2359 91.667000 1630 3333 1 chrUn.!!$F2 1703
9 TraesCS4A01G473300 chrUn 408506185 408507537 1352 True 1873.000000 1873 91.648000 1630 2982 1 chrUn.!!$R3 1352
10 TraesCS4A01G473300 chrUn 334534152 334536525 2373 True 1649.000000 2178 88.432500 490 2982 2 chrUn.!!$R6 2492
11 TraesCS4A01G473300 chrUn 464058362 464059170 808 True 972.000000 972 88.329000 3251 4063 1 chrUn.!!$R4 812
12 TraesCS4A01G473300 chrUn 467115849 467116536 687 True 887.000000 887 89.884000 3335 4026 1 chrUn.!!$R5 691
13 TraesCS4A01G473300 chr7B 57633092 57635910 2818 True 965.500000 1011 81.755000 1471 4184 2 chr7B.!!$R2 2713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 897 0.106521 TATAAAACCCTACCCGCGCC 59.893 55.0 0.0 0.0 0.00 6.53 F
1380 1409 0.176910 TGTCCTTGAACACGCTCACA 59.823 50.0 0.0 0.0 0.00 3.58 F
1382 1411 0.249868 TCCTTGAACACGCTCACAGG 60.250 55.0 0.0 0.0 0.00 4.00 F
1384 1413 0.249868 CTTGAACACGCTCACAGGGA 60.250 55.0 0.0 0.0 31.91 4.20 F
1419 1448 0.252103 TCGGCAACCTCTCCTACCTT 60.252 55.0 0.0 0.0 0.00 3.50 F
2061 2090 0.321210 TGCCGACGGATGACATGTTT 60.321 50.0 20.5 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2064 2093 0.259065 ACTCGAGGCTCCTCATACCA 59.741 55.000 18.41 0.00 42.86 3.25 R
2640 2669 1.115326 TCATCGGGATCGCACCAGAT 61.115 55.000 10.70 7.30 43.43 2.90 R
2742 2771 1.134965 AGGTACTTGAGCTCGATGCAC 60.135 52.381 9.64 5.33 39.60 4.57 R
2992 3093 1.219664 CCACTCGCCGGTTATGGAA 59.780 57.895 1.90 0.00 31.69 3.53 R
3232 3369 2.264794 GTCACGGAGCGTCCCATT 59.735 61.111 0.00 0.00 38.32 3.16 R
4001 4176 0.253894 TGATGGCTGTGAGGTCATGG 59.746 55.000 0.00 0.00 31.13 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.944376 AGTTTGACTCAAGACAAAGCTAATATA 57.056 29.630 7.69 0.00 39.51 0.86
65 66 8.543862 AATAAAAACGAAGGAAGTAGTAGGTG 57.456 34.615 0.00 0.00 0.00 4.00
73 74 2.093606 GGAAGTAGTAGGTGGGCACTTC 60.094 54.545 4.57 4.57 42.72 3.01
93 94 6.717084 CACTTCTTCTTAATTTCCAGGTCCTT 59.283 38.462 0.00 0.00 0.00 3.36
106 107 3.777522 CCAGGTCCTTGATATCTATCCCC 59.222 52.174 3.98 0.00 31.71 4.81
116 117 5.903923 TGATATCTATCCCCACTTAGCTCA 58.096 41.667 3.98 0.00 31.71 4.26
222 224 6.150307 TGCGTATCTCAAAGGAAAGCATAAAA 59.850 34.615 0.00 0.00 0.00 1.52
236 238 8.784043 GGAAAGCATAAAACATCGGTAAGATAT 58.216 33.333 0.00 0.00 37.52 1.63
276 279 3.868757 ACACAGTATAGACACATGCGT 57.131 42.857 0.00 0.00 0.00 5.24
288 291 3.130633 ACACATGCGTTCATATATGCGT 58.869 40.909 7.92 0.00 32.65 5.24
296 299 4.201714 GCGTTCATATATGCGTGCATACAT 60.202 41.667 16.18 8.19 41.09 2.29
298 301 5.953777 CGTTCATATATGCGTGCATACATTC 59.046 40.000 16.18 3.90 41.09 2.67
327 330 0.685097 AACACACACGCAGACCCTAT 59.315 50.000 0.00 0.00 0.00 2.57
334 337 1.273606 CACGCAGACCCTATCCCTATG 59.726 57.143 0.00 0.00 0.00 2.23
339 342 3.448934 CAGACCCTATCCCTATGAGCAT 58.551 50.000 0.00 0.00 0.00 3.79
342 345 3.704061 GACCCTATCCCTATGAGCATCTC 59.296 52.174 0.00 0.00 34.92 2.75
375 378 3.071023 AGAACGTCTTCTCCCATTGAACA 59.929 43.478 0.00 0.00 30.11 3.18
377 380 2.104111 ACGTCTTCTCCCATTGAACACA 59.896 45.455 0.00 0.00 0.00 3.72
384 387 0.171007 CCCATTGAACACACATCGCC 59.829 55.000 0.00 0.00 0.00 5.54
409 412 6.260493 CAGAGATCCTGAAATGAATCCAGAAC 59.740 42.308 5.53 0.00 45.78 3.01
412 415 6.546403 AGATCCTGAAATGAATCCAGAACATG 59.454 38.462 0.00 0.00 0.00 3.21
436 439 7.168219 TGATGTGAGCACTAGAATTTAAACCT 58.832 34.615 0.00 0.00 0.00 3.50
437 440 8.318412 TGATGTGAGCACTAGAATTTAAACCTA 58.682 33.333 0.00 0.00 0.00 3.08
595 608 5.086598 TCATATATTTTGGGGAAAGGGGG 57.913 43.478 0.00 0.00 0.00 5.40
596 609 2.190398 ATATTTTGGGGAAAGGGGGC 57.810 50.000 0.00 0.00 0.00 5.80
665 678 1.136110 CCAAAGGAAAACCTTGCACGT 59.864 47.619 2.18 0.00 0.00 4.49
668 681 2.922740 AGGAAAACCTTGCACGTAGA 57.077 45.000 0.00 0.00 0.00 2.59
678 692 3.306973 CCTTGCACGTAGACATACACATG 59.693 47.826 0.00 0.00 38.21 3.21
741 756 6.623743 GCATTTTTGTACGCTAATTAGTCTCG 59.376 38.462 13.91 11.08 0.00 4.04
789 818 2.446435 GTATCCAAACCACAGCCATGT 58.554 47.619 0.00 0.00 41.57 3.21
814 843 4.102524 TGCAGATCGTATCCAAACCCTAAT 59.897 41.667 0.00 0.00 0.00 1.73
815 844 5.305902 TGCAGATCGTATCCAAACCCTAATA 59.694 40.000 0.00 0.00 0.00 0.98
868 897 0.106521 TATAAAACCCTACCCGCGCC 59.893 55.000 0.00 0.00 0.00 6.53
918 947 1.852633 ACCCATTTTGCTTAGCTCCC 58.147 50.000 5.60 0.00 0.00 4.30
1018 1047 1.211212 TCATGGCCCTCATCTTCACAG 59.789 52.381 0.00 0.00 32.92 3.66
1027 1056 3.513119 CCTCATCTTCACAGTTCTCCTCA 59.487 47.826 0.00 0.00 0.00 3.86
1031 1060 5.483231 TCATCTTCACAGTTCTCCTCATCTT 59.517 40.000 0.00 0.00 0.00 2.40
1032 1061 5.815233 TCTTCACAGTTCTCCTCATCTTT 57.185 39.130 0.00 0.00 0.00 2.52
1033 1062 5.788450 TCTTCACAGTTCTCCTCATCTTTC 58.212 41.667 0.00 0.00 0.00 2.62
1048 1077 2.689658 TCTTTCTCTTCCTCCACACCA 58.310 47.619 0.00 0.00 0.00 4.17
1063 1092 3.710722 CCACAAGCCCGGCTCTCT 61.711 66.667 13.72 0.00 38.25 3.10
1276 1305 2.266055 GCAACCTCTCCCACCTCG 59.734 66.667 0.00 0.00 0.00 4.63
1360 1389 2.486982 TCCTACCTCAAGTTTCTCGACG 59.513 50.000 0.00 0.00 0.00 5.12
1361 1390 2.228343 CCTACCTCAAGTTTCTCGACGT 59.772 50.000 0.00 0.00 0.00 4.34
1362 1391 2.135664 ACCTCAAGTTTCTCGACGTG 57.864 50.000 0.00 0.00 0.00 4.49
1363 1392 1.407979 ACCTCAAGTTTCTCGACGTGT 59.592 47.619 0.00 0.00 32.05 4.49
1364 1393 2.052157 CCTCAAGTTTCTCGACGTGTC 58.948 52.381 0.00 0.00 32.05 3.67
1365 1394 2.052157 CTCAAGTTTCTCGACGTGTCC 58.948 52.381 0.00 0.00 32.05 4.02
1366 1395 1.679680 TCAAGTTTCTCGACGTGTCCT 59.320 47.619 0.00 0.00 32.05 3.85
1367 1396 2.100252 TCAAGTTTCTCGACGTGTCCTT 59.900 45.455 0.00 0.00 32.05 3.36
1368 1397 2.135664 AGTTTCTCGACGTGTCCTTG 57.864 50.000 0.00 0.00 0.00 3.61
1369 1398 1.679680 AGTTTCTCGACGTGTCCTTGA 59.320 47.619 0.00 0.00 0.00 3.02
1370 1399 2.100252 AGTTTCTCGACGTGTCCTTGAA 59.900 45.455 0.00 0.00 0.00 2.69
1371 1400 2.129823 TTCTCGACGTGTCCTTGAAC 57.870 50.000 0.00 0.00 0.00 3.18
1372 1401 1.026584 TCTCGACGTGTCCTTGAACA 58.973 50.000 0.00 0.00 0.00 3.18
1373 1402 1.129326 CTCGACGTGTCCTTGAACAC 58.871 55.000 0.00 0.00 44.87 3.32
1378 1407 2.986311 GTGTCCTTGAACACGCTCA 58.014 52.632 0.00 0.00 40.09 4.26
1379 1408 0.582005 GTGTCCTTGAACACGCTCAC 59.418 55.000 0.00 0.00 40.09 3.51
1380 1409 0.176910 TGTCCTTGAACACGCTCACA 59.823 50.000 0.00 0.00 0.00 3.58
1381 1410 0.861837 GTCCTTGAACACGCTCACAG 59.138 55.000 0.00 0.00 0.00 3.66
1382 1411 0.249868 TCCTTGAACACGCTCACAGG 60.250 55.000 0.00 0.00 0.00 4.00
1383 1412 1.230635 CCTTGAACACGCTCACAGGG 61.231 60.000 0.00 0.00 0.00 4.45
1384 1413 0.249868 CTTGAACACGCTCACAGGGA 60.250 55.000 0.00 0.00 31.91 4.20
1385 1414 0.531974 TTGAACACGCTCACAGGGAC 60.532 55.000 0.00 0.00 31.91 4.46
1386 1415 2.022129 GAACACGCTCACAGGGACG 61.022 63.158 0.00 0.00 31.91 4.79
1387 1416 3.515316 AACACGCTCACAGGGACGG 62.515 63.158 0.00 0.00 31.91 4.79
1388 1417 3.991051 CACGCTCACAGGGACGGT 61.991 66.667 0.00 0.00 37.10 4.83
1389 1418 3.231736 ACGCTCACAGGGACGGTT 61.232 61.111 0.00 0.00 31.98 4.44
1390 1419 2.432628 CGCTCACAGGGACGGTTC 60.433 66.667 0.00 0.00 31.98 3.62
1391 1420 2.047179 GCTCACAGGGACGGTTCC 60.047 66.667 0.00 0.00 41.95 3.62
1392 1421 2.261671 CTCACAGGGACGGTTCCG 59.738 66.667 9.81 9.81 43.94 4.30
1393 1422 3.934391 CTCACAGGGACGGTTCCGC 62.934 68.421 11.32 4.36 43.94 5.54
1396 1425 4.760047 CAGGGACGGTTCCGCCAG 62.760 72.222 19.81 11.66 43.94 4.85
1398 1427 4.011517 GGGACGGTTCCGCCAGAA 62.012 66.667 19.81 0.00 43.94 3.02
1410 1439 4.285851 CCAGAACTCGGCAACCTC 57.714 61.111 0.00 0.00 0.00 3.85
1411 1440 1.674057 CCAGAACTCGGCAACCTCT 59.326 57.895 0.00 0.00 0.00 3.69
1412 1441 0.390472 CCAGAACTCGGCAACCTCTC 60.390 60.000 0.00 0.00 0.00 3.20
1413 1442 0.390472 CAGAACTCGGCAACCTCTCC 60.390 60.000 0.00 0.00 0.00 3.71
1414 1443 0.543174 AGAACTCGGCAACCTCTCCT 60.543 55.000 0.00 0.00 0.00 3.69
1415 1444 1.183549 GAACTCGGCAACCTCTCCTA 58.816 55.000 0.00 0.00 0.00 2.94
1416 1445 0.896226 AACTCGGCAACCTCTCCTAC 59.104 55.000 0.00 0.00 0.00 3.18
1417 1446 0.971447 ACTCGGCAACCTCTCCTACC 60.971 60.000 0.00 0.00 0.00 3.18
1418 1447 0.684805 CTCGGCAACCTCTCCTACCT 60.685 60.000 0.00 0.00 0.00 3.08
1419 1448 0.252103 TCGGCAACCTCTCCTACCTT 60.252 55.000 0.00 0.00 0.00 3.50
1420 1449 1.006281 TCGGCAACCTCTCCTACCTTA 59.994 52.381 0.00 0.00 0.00 2.69
1421 1450 1.829222 CGGCAACCTCTCCTACCTTAA 59.171 52.381 0.00 0.00 0.00 1.85
1422 1451 2.159085 CGGCAACCTCTCCTACCTTAAG 60.159 54.545 0.00 0.00 0.00 1.85
1423 1452 2.838813 GGCAACCTCTCCTACCTTAAGT 59.161 50.000 0.97 0.00 0.00 2.24
1424 1453 3.263681 GGCAACCTCTCCTACCTTAAGTT 59.736 47.826 0.97 0.00 0.00 2.66
1425 1454 4.263374 GGCAACCTCTCCTACCTTAAGTTT 60.263 45.833 0.97 0.00 0.00 2.66
1426 1455 4.936411 GCAACCTCTCCTACCTTAAGTTTC 59.064 45.833 0.97 0.00 0.00 2.78
1427 1456 5.280062 GCAACCTCTCCTACCTTAAGTTTCT 60.280 44.000 0.97 0.00 0.00 2.52
1428 1457 6.399743 CAACCTCTCCTACCTTAAGTTTCTC 58.600 44.000 0.97 0.00 0.00 2.87
1429 1458 4.705991 ACCTCTCCTACCTTAAGTTTCTCG 59.294 45.833 0.97 0.00 0.00 4.04
1430 1459 4.948621 CCTCTCCTACCTTAAGTTTCTCGA 59.051 45.833 0.97 0.00 0.00 4.04
1431 1460 5.595133 CCTCTCCTACCTTAAGTTTCTCGAT 59.405 44.000 0.97 0.00 0.00 3.59
1636 1665 1.226547 GGCAAGCTCTCGAGACTCG 60.227 63.158 18.91 18.91 42.10 4.18
1763 1792 0.970937 TCGATTCCGGTGGAGCTCTT 60.971 55.000 14.64 0.00 36.24 2.85
1797 1826 3.321111 GCTTGGTATACCTCAATCTCGGA 59.679 47.826 22.41 0.00 36.82 4.55
1882 1911 6.817765 ACATTGATATGTCGTCCAACTTTT 57.182 33.333 0.00 0.00 41.07 2.27
1904 1933 3.233980 CGGCGAGATCCCCATCCA 61.234 66.667 0.00 0.00 0.00 3.41
1905 1934 2.587247 CGGCGAGATCCCCATCCAT 61.587 63.158 0.00 0.00 0.00 3.41
2061 2090 0.321210 TGCCGACGGATGACATGTTT 60.321 50.000 20.50 0.00 0.00 2.83
2064 2093 2.888594 CCGACGGATGACATGTTTAGT 58.111 47.619 8.64 0.00 0.00 2.24
2169 2198 1.543429 GCCTCACTTACCAACTGCACT 60.543 52.381 0.00 0.00 0.00 4.40
2178 2207 1.108727 CCAACTGCACTGGCCTGAAA 61.109 55.000 17.64 0.24 40.13 2.69
2599 2628 1.267574 CCCAGCTGGCTTGTCTAGGA 61.268 60.000 28.39 0.00 0.00 2.94
2640 2669 4.451150 CTCGCCGGCAACCTGCTA 62.451 66.667 28.98 0.00 44.28 3.49
2646 2675 1.221840 CGGCAACCTGCTATCTGGT 59.778 57.895 0.00 0.00 44.28 4.00
2656 2685 1.806461 GCTATCTGGTGCGATCCCGA 61.806 60.000 0.00 0.00 38.22 5.14
2665 2694 1.367471 GCGATCCCGATGACCATCA 59.633 57.895 10.24 0.00 37.69 3.07
2860 2961 7.548196 AACTTTTCATACAACGACTTCTCAA 57.452 32.000 0.00 0.00 0.00 3.02
3153 3290 3.039452 GGACTACCCGAGGATCTCC 57.961 63.158 0.00 0.00 0.00 3.71
3205 3342 4.024717 AGCAGTCGAGGCTGATCA 57.975 55.556 9.10 0.00 40.80 2.92
3206 3343 2.280835 AGCAGTCGAGGCTGATCAA 58.719 52.632 9.10 0.00 40.80 2.57
3211 3348 2.202610 CGAGGCTGATCAACGCGA 60.203 61.111 15.93 0.00 0.00 5.87
3234 3371 2.048033 TTCGGGCGCGTGTACAAT 60.048 55.556 23.19 0.00 0.00 2.71
3459 3596 2.423898 CCACCTCTACCGGCGTGAT 61.424 63.158 6.01 0.00 0.00 3.06
3553 3690 1.079197 CTGCATCACTACGCACCCA 60.079 57.895 0.00 0.00 33.75 4.51
3711 3857 1.251251 GCAACTCCACTGCAGGATTT 58.749 50.000 19.93 5.20 39.69 2.17
3754 3901 2.004017 TCGCGCCAGGTAATTTACAAG 58.996 47.619 0.00 0.62 0.00 3.16
3756 3903 2.612212 CGCGCCAGGTAATTTACAAGAT 59.388 45.455 0.00 0.00 0.00 2.40
3784 3931 7.666623 TCGAATTAACATGGCATATGAGTAGA 58.333 34.615 6.97 0.00 0.00 2.59
3786 3933 7.063898 CGAATTAACATGGCATATGAGTAGAGG 59.936 40.741 6.97 0.00 0.00 3.69
3797 3944 6.348295 GCATATGAGTAGAGGAAATGCATGTG 60.348 42.308 6.97 0.00 38.44 3.21
3798 3948 4.824479 TGAGTAGAGGAAATGCATGTGA 57.176 40.909 0.00 0.00 0.00 3.58
3799 3949 5.363562 TGAGTAGAGGAAATGCATGTGAT 57.636 39.130 0.00 0.00 0.00 3.06
3801 3951 5.104817 TGAGTAGAGGAAATGCATGTGATCA 60.105 40.000 0.00 0.00 0.00 2.92
3842 4011 2.503331 TCATCATGGCGTTCTTGTTGT 58.497 42.857 0.00 0.00 0.00 3.32
3863 4032 4.099881 TGTGTGGTTTTAGAGTACGGACTT 59.900 41.667 0.00 0.00 35.45 3.01
3902 4071 0.249741 AAGGCGACGTGTACAGCTTT 60.250 50.000 0.00 0.00 0.00 3.51
3909 4078 1.574428 GTGTACAGCTTTGGCGTGG 59.426 57.895 0.00 0.00 44.37 4.94
3980 4149 1.302511 GGGACTCACATTGCACGGT 60.303 57.895 0.00 0.00 0.00 4.83
3990 4165 2.351924 ATTGCACGGTTGGGTGAGGT 62.352 55.000 0.00 0.00 40.38 3.85
4013 4188 2.230653 CCACCCCCATGACCTCACA 61.231 63.158 0.00 0.00 0.00 3.58
4026 4201 1.158484 CCTCACAGCCATCATCGCAG 61.158 60.000 0.00 0.00 0.00 5.18
4032 4207 0.538584 AGCCATCATCGCAGAGTCAA 59.461 50.000 0.00 0.00 43.63 3.18
4039 4214 0.538584 ATCGCAGAGTCAATGCTGGA 59.461 50.000 3.20 0.00 43.63 3.86
4041 4216 0.108472 CGCAGAGTCAATGCTGGAGA 60.108 55.000 3.20 0.00 41.61 3.71
4045 4220 2.093075 CAGAGTCAATGCTGGAGACCAT 60.093 50.000 0.00 0.00 30.82 3.55
4097 4272 1.634753 CGTCGTCGTCGAGCTGATA 59.365 57.895 4.68 0.00 46.96 2.15
4196 4371 5.803552 CTCCTCAAGGATTCAACTTCTTCT 58.196 41.667 0.00 0.00 44.46 2.85
4225 4400 6.237384 CGTACTTGTGGTTACGTATTCATGAC 60.237 42.308 0.00 0.00 0.00 3.06
4231 4406 9.819267 TTGTGGTTACGTATTCATGACATATAA 57.181 29.630 0.00 0.00 0.00 0.98
4274 4457 3.473113 AATAAACTTGTGGCATCCCCT 57.527 42.857 0.00 0.00 0.00 4.79
4280 4465 4.489771 GTGGCATCCCCTGTCCGG 62.490 72.222 0.00 0.00 0.00 5.14
4296 4481 2.883386 GTCCGGGTATGAAGATAGTCGT 59.117 50.000 0.00 0.00 0.00 4.34
4376 4561 2.985847 GCAGGTGTGGCAAGGGAC 60.986 66.667 0.00 0.00 0.00 4.46
4380 4565 0.766674 AGGTGTGGCAAGGGACTACA 60.767 55.000 0.00 0.00 38.49 2.74
4390 4575 4.506095 GGCAAGGGACTACAGGTTAGAAAA 60.506 45.833 0.00 0.00 38.49 2.29
4421 4614 6.869695 TGTACGTTGATGGTATTGAGTATGT 58.130 36.000 0.00 0.00 0.00 2.29
4459 4662 0.841594 AACTGTTACCCCGGGGCTTA 60.842 55.000 40.67 23.13 39.32 3.09
4466 4669 1.457455 CCCCGGGGCTTAATGCAAT 60.457 57.895 31.01 0.00 45.15 3.56
4467 4670 1.048160 CCCCGGGGCTTAATGCAATT 61.048 55.000 31.01 0.00 45.15 2.32
4468 4671 0.104671 CCCGGGGCTTAATGCAATTG 59.895 55.000 14.71 0.00 45.15 2.32
4469 4672 0.823460 CCGGGGCTTAATGCAATTGT 59.177 50.000 7.40 0.00 45.15 2.71
4470 4673 2.028130 CCGGGGCTTAATGCAATTGTA 58.972 47.619 7.40 2.30 45.15 2.41
4471 4674 2.627699 CCGGGGCTTAATGCAATTGTAT 59.372 45.455 7.40 5.10 45.15 2.29
4472 4675 3.823873 CCGGGGCTTAATGCAATTGTATA 59.176 43.478 9.58 0.00 45.15 1.47
4473 4676 4.279671 CCGGGGCTTAATGCAATTGTATAA 59.720 41.667 9.58 4.83 45.15 0.98
4474 4677 5.460646 CGGGGCTTAATGCAATTGTATAAG 58.539 41.667 9.58 13.82 45.15 1.73
4475 4678 5.230182 GGGGCTTAATGCAATTGTATAAGC 58.770 41.667 26.51 26.51 45.15 3.09
4476 4679 5.221422 GGGGCTTAATGCAATTGTATAAGCA 60.221 40.000 30.58 16.73 45.15 3.91
4477 4680 5.691754 GGGCTTAATGCAATTGTATAAGCAC 59.308 40.000 30.58 27.85 45.15 4.40
4478 4681 6.272318 GGCTTAATGCAATTGTATAAGCACA 58.728 36.000 30.58 13.93 45.15 4.57
4479 4682 6.925165 GGCTTAATGCAATTGTATAAGCACAT 59.075 34.615 30.58 15.12 45.15 3.21
4480 4683 7.095940 GGCTTAATGCAATTGTATAAGCACATG 60.096 37.037 30.58 13.25 45.15 3.21
4481 4684 7.648908 GCTTAATGCAATTGTATAAGCACATGA 59.351 33.333 27.95 8.42 40.14 3.07
4482 4685 9.177304 CTTAATGCAATTGTATAAGCACATGAG 57.823 33.333 9.58 0.00 40.14 2.90
4483 4686 4.923893 TGCAATTGTATAAGCACATGAGC 58.076 39.130 7.07 7.07 31.05 4.26
4484 4687 4.202040 TGCAATTGTATAAGCACATGAGCC 60.202 41.667 11.77 0.00 34.23 4.70
4485 4688 4.530388 CAATTGTATAAGCACATGAGCCG 58.470 43.478 11.77 0.00 34.23 5.52
4486 4689 2.238942 TGTATAAGCACATGAGCCGG 57.761 50.000 11.77 0.00 34.23 6.13
4487 4690 1.202639 TGTATAAGCACATGAGCCGGG 60.203 52.381 11.77 0.00 34.23 5.73
4488 4691 0.396435 TATAAGCACATGAGCCGGGG 59.604 55.000 11.77 0.00 34.23 5.73
4489 4692 2.965716 ATAAGCACATGAGCCGGGGC 62.966 60.000 11.77 0.18 42.33 5.80
4499 4702 3.149648 GCCGGGGCTTGATGCAAT 61.150 61.111 2.18 0.00 45.15 3.56
4571 4774 2.745821 TGCAACTTGATAAGCAGCAGAG 59.254 45.455 0.00 0.00 36.89 3.35
4572 4775 2.746362 GCAACTTGATAAGCAGCAGAGT 59.254 45.455 0.00 0.00 33.40 3.24
4573 4776 3.935203 GCAACTTGATAAGCAGCAGAGTA 59.065 43.478 0.00 0.00 33.40 2.59
4574 4777 4.033817 GCAACTTGATAAGCAGCAGAGTAG 59.966 45.833 0.00 0.00 33.40 2.57
4575 4778 5.174395 CAACTTGATAAGCAGCAGAGTAGT 58.826 41.667 0.00 0.00 0.00 2.73
4598 4809 8.296799 AGTGCATTTGTATTTTGTATTGTGTG 57.703 30.769 0.00 0.00 0.00 3.82
4599 4810 7.925483 AGTGCATTTGTATTTTGTATTGTGTGT 59.075 29.630 0.00 0.00 0.00 3.72
4629 4840 4.573607 ACAGAGTGTAAAAAGTTTCGTCCC 59.426 41.667 0.00 0.00 0.00 4.46
4641 4852 7.812690 AAAGTTTCGTCCCTAACTTTATTGT 57.187 32.000 10.29 0.00 46.88 2.71
4642 4853 6.796705 AGTTTCGTCCCTAACTTTATTGTG 57.203 37.500 0.00 0.00 30.72 3.33
4643 4854 6.293698 AGTTTCGTCCCTAACTTTATTGTGT 58.706 36.000 0.00 0.00 30.72 3.72
4644 4855 6.204108 AGTTTCGTCCCTAACTTTATTGTGTG 59.796 38.462 0.00 0.00 30.72 3.82
4645 4856 5.217978 TCGTCCCTAACTTTATTGTGTGT 57.782 39.130 0.00 0.00 0.00 3.72
4646 4857 6.343716 TCGTCCCTAACTTTATTGTGTGTA 57.656 37.500 0.00 0.00 0.00 2.90
4647 4858 6.757237 TCGTCCCTAACTTTATTGTGTGTAA 58.243 36.000 0.00 0.00 0.00 2.41
4648 4859 7.215789 TCGTCCCTAACTTTATTGTGTGTAAA 58.784 34.615 0.00 0.00 0.00 2.01
4649 4860 7.714377 TCGTCCCTAACTTTATTGTGTGTAAAA 59.286 33.333 0.00 0.00 0.00 1.52
4650 4861 8.344098 CGTCCCTAACTTTATTGTGTGTAAAAA 58.656 33.333 0.00 0.00 0.00 1.94
4651 4862 9.673454 GTCCCTAACTTTATTGTGTGTAAAAAG 57.327 33.333 0.00 0.00 0.00 2.27
4652 4863 9.629878 TCCCTAACTTTATTGTGTGTAAAAAGA 57.370 29.630 0.00 0.00 0.00 2.52
4673 4884 9.555727 AAAAGAAGTACTATAGTTGAACTTGCA 57.444 29.630 19.55 0.00 30.83 4.08
4674 4885 9.555727 AAAGAAGTACTATAGTTGAACTTGCAA 57.444 29.630 19.55 0.00 30.83 4.08
4675 4886 8.535690 AGAAGTACTATAGTTGAACTTGCAAC 57.464 34.615 19.55 8.84 46.47 4.17
4685 4896 6.525121 GTTGAACTTGCAACCTTTTATTCC 57.475 37.500 0.00 0.00 41.69 3.01
4686 4897 5.860941 TGAACTTGCAACCTTTTATTCCA 57.139 34.783 0.00 0.00 0.00 3.53
4687 4898 5.596845 TGAACTTGCAACCTTTTATTCCAC 58.403 37.500 0.00 0.00 0.00 4.02
4688 4899 4.237349 ACTTGCAACCTTTTATTCCACG 57.763 40.909 0.00 0.00 0.00 4.94
4689 4900 3.886505 ACTTGCAACCTTTTATTCCACGA 59.113 39.130 0.00 0.00 0.00 4.35
4690 4901 4.522789 ACTTGCAACCTTTTATTCCACGAT 59.477 37.500 0.00 0.00 0.00 3.73
4691 4902 4.433186 TGCAACCTTTTATTCCACGATG 57.567 40.909 0.00 0.00 0.00 3.84
4692 4903 3.179048 GCAACCTTTTATTCCACGATGC 58.821 45.455 0.00 0.00 0.00 3.91
4693 4904 3.769536 CAACCTTTTATTCCACGATGCC 58.230 45.455 0.00 0.00 0.00 4.40
4694 4905 2.014128 ACCTTTTATTCCACGATGCCG 58.986 47.619 0.00 0.00 42.50 5.69
4695 4906 1.268539 CCTTTTATTCCACGATGCCGC 60.269 52.381 0.00 0.00 39.95 6.53
4696 4907 1.400142 CTTTTATTCCACGATGCCGCA 59.600 47.619 0.00 0.00 39.95 5.69
4697 4908 1.013596 TTTATTCCACGATGCCGCAG 58.986 50.000 0.00 0.00 39.95 5.18
4698 4909 1.436195 TTATTCCACGATGCCGCAGC 61.436 55.000 0.00 0.00 39.95 5.25
4708 4919 4.972591 GCCGCAGCAATTCTTGTT 57.027 50.000 0.00 0.00 39.53 2.83
4709 4920 2.437850 GCCGCAGCAATTCTTGTTG 58.562 52.632 0.00 0.03 43.66 3.33
4710 4921 0.318955 GCCGCAGCAATTCTTGTTGT 60.319 50.000 5.76 0.00 42.89 3.32
4711 4922 1.068610 GCCGCAGCAATTCTTGTTGTA 60.069 47.619 5.76 0.00 42.89 2.41
4712 4923 2.606795 GCCGCAGCAATTCTTGTTGTAA 60.607 45.455 5.76 0.00 42.89 2.41
4713 4924 3.637432 CCGCAGCAATTCTTGTTGTAAA 58.363 40.909 5.76 0.00 42.89 2.01
4714 4925 4.047822 CCGCAGCAATTCTTGTTGTAAAA 58.952 39.130 5.76 0.00 42.89 1.52
4715 4926 4.148696 CCGCAGCAATTCTTGTTGTAAAAG 59.851 41.667 5.76 0.00 42.89 2.27
4716 4927 4.975502 CGCAGCAATTCTTGTTGTAAAAGA 59.024 37.500 5.76 0.00 42.89 2.52
4717 4928 5.630680 CGCAGCAATTCTTGTTGTAAAAGAT 59.369 36.000 5.76 0.00 42.89 2.40
4718 4929 6.801377 CGCAGCAATTCTTGTTGTAAAAGATA 59.199 34.615 5.76 0.00 42.89 1.98
4719 4930 7.325821 CGCAGCAATTCTTGTTGTAAAAGATAA 59.674 33.333 5.76 0.00 42.89 1.75
4720 4931 8.427774 GCAGCAATTCTTGTTGTAAAAGATAAC 58.572 33.333 5.76 0.00 42.89 1.89
4721 4932 9.683069 CAGCAATTCTTGTTGTAAAAGATAACT 57.317 29.630 0.00 0.00 37.15 2.24
4754 4965 9.944376 TCAGTAGAGATAATTAACAGTTTTGCT 57.056 29.630 0.00 0.00 0.00 3.91
4765 4976 7.801716 TTAACAGTTTTGCTACAACTCATCT 57.198 32.000 0.00 0.00 31.83 2.90
4766 4977 8.896320 TTAACAGTTTTGCTACAACTCATCTA 57.104 30.769 0.00 0.00 31.83 1.98
4767 4978 7.426929 AACAGTTTTGCTACAACTCATCTAG 57.573 36.000 0.00 0.00 31.83 2.43
4768 4979 6.759272 ACAGTTTTGCTACAACTCATCTAGA 58.241 36.000 0.00 0.00 31.83 2.43
4769 4980 7.390027 ACAGTTTTGCTACAACTCATCTAGAT 58.610 34.615 0.00 0.00 31.83 1.98
4770 4981 7.332926 ACAGTTTTGCTACAACTCATCTAGATG 59.667 37.037 24.32 24.32 40.09 2.90
4771 4982 7.547019 CAGTTTTGCTACAACTCATCTAGATGA 59.453 37.037 29.17 29.17 44.83 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 4.158579 CCTGGAAATTAAGAAGAAGTGCCC 59.841 45.833 0.00 0.00 0.00 5.36
73 74 8.986929 ATATCAAGGACCTGGAAATTAAGAAG 57.013 34.615 1.64 0.00 0.00 2.85
93 94 5.903923 TGAGCTAAGTGGGGATAGATATCA 58.096 41.667 5.32 0.00 34.40 2.15
134 136 3.394674 TCTGGCAACGTGATGTAAAGA 57.605 42.857 0.00 0.00 42.51 2.52
181 183 5.712917 AGATACGCAAAGGGGTAATGAAAAA 59.287 36.000 0.00 0.00 44.37 1.94
222 224 8.908786 AATGACATTCAATATCTTACCGATGT 57.091 30.769 0.00 0.00 33.48 3.06
276 279 7.614124 ATGAATGTATGCACGCATATATGAA 57.386 32.000 18.35 11.86 38.96 2.57
298 301 4.152223 TCTGCGTGTGTGTTCATAGAAATG 59.848 41.667 0.00 0.00 0.00 2.32
327 330 1.425448 TCTCGGAGATGCTCATAGGGA 59.575 52.381 2.97 0.00 33.89 4.20
339 342 2.678836 GACGTTCTCAATCTCTCGGAGA 59.321 50.000 7.60 7.60 43.20 3.71
342 345 3.127895 AGAAGACGTTCTCAATCTCTCGG 59.872 47.826 0.00 0.00 38.84 4.63
369 372 1.069978 TCTCTGGCGATGTGTGTTCAA 59.930 47.619 0.00 0.00 0.00 2.69
375 378 0.463204 CAGGATCTCTGGCGATGTGT 59.537 55.000 0.00 0.00 39.76 3.72
377 380 1.489481 TTCAGGATCTCTGGCGATGT 58.511 50.000 10.23 0.00 43.53 3.06
384 387 5.926663 TCTGGATTCATTTCAGGATCTCTG 58.073 41.667 5.18 5.18 44.68 3.35
409 412 7.912250 GGTTTAAATTCTAGTGCTCACATCATG 59.088 37.037 2.63 0.00 0.00 3.07
412 415 7.617041 AGGTTTAAATTCTAGTGCTCACATC 57.383 36.000 2.63 0.00 0.00 3.06
436 439 6.674861 TGGTTAGGAGGACAATGGTATTCTTA 59.325 38.462 0.00 0.00 0.00 2.10
437 440 5.491078 TGGTTAGGAGGACAATGGTATTCTT 59.509 40.000 0.00 0.00 0.00 2.52
447 459 2.307686 GGTTGGATGGTTAGGAGGACAA 59.692 50.000 0.00 0.00 0.00 3.18
521 533 4.347607 ACTACGTACAAGTCTTATGGGGT 58.652 43.478 0.00 0.00 0.00 4.95
575 588 3.474785 AGCCCCCTTTCCCCAAAATATAT 59.525 43.478 0.00 0.00 0.00 0.86
588 601 2.920271 AGCTTAAACTCTAGCCCCCTTT 59.080 45.455 0.00 0.00 38.14 3.11
595 608 7.541437 CGGGTATATGTAAGCTTAAACTCTAGC 59.459 40.741 7.99 5.39 37.66 3.42
596 609 8.574737 ACGGGTATATGTAAGCTTAAACTCTAG 58.425 37.037 7.99 0.00 0.00 2.43
741 756 2.824341 ACGGGATATCTAATCCACGGAC 59.176 50.000 2.05 0.00 39.93 4.79
789 818 3.646162 AGGGTTTGGATACGATCTGCATA 59.354 43.478 0.00 0.00 42.51 3.14
814 843 1.574134 GCGCCGTGCCTAACTAATTA 58.426 50.000 0.00 0.00 37.76 1.40
815 844 2.390427 GCGCCGTGCCTAACTAATT 58.610 52.632 0.00 0.00 37.76 1.40
918 947 1.601663 GGTCGAGCTCGGAATCAGATG 60.602 57.143 33.98 3.88 40.29 2.90
954 983 3.440415 ATGAGAGCACGCGACGGA 61.440 61.111 15.93 0.00 0.00 4.69
958 987 4.819761 GGCCATGAGAGCACGCGA 62.820 66.667 15.93 0.00 0.00 5.87
982 1011 0.325860 ATGATTGGCCTGGCAACCAT 60.326 50.000 22.05 11.04 35.42 3.55
983 1012 1.078891 ATGATTGGCCTGGCAACCA 59.921 52.632 22.05 8.95 0.00 3.67
984 1013 1.518774 CATGATTGGCCTGGCAACC 59.481 57.895 22.05 2.44 0.00 3.77
985 1014 1.518774 CCATGATTGGCCTGGCAAC 59.481 57.895 22.05 4.31 35.85 4.17
986 1015 4.037441 CCATGATTGGCCTGGCAA 57.963 55.556 22.05 6.26 35.85 4.52
1018 1047 5.395214 GGAGGAAGAGAAAGATGAGGAGAAC 60.395 48.000 0.00 0.00 0.00 3.01
1027 1056 3.008485 GTGGTGTGGAGGAAGAGAAAGAT 59.992 47.826 0.00 0.00 0.00 2.40
1031 1060 1.801242 TGTGGTGTGGAGGAAGAGAA 58.199 50.000 0.00 0.00 0.00 2.87
1032 1061 1.694150 CTTGTGGTGTGGAGGAAGAGA 59.306 52.381 0.00 0.00 0.00 3.10
1033 1062 1.879796 GCTTGTGGTGTGGAGGAAGAG 60.880 57.143 0.00 0.00 0.00 2.85
1048 1077 2.348998 CAAGAGAGCCGGGCTTGT 59.651 61.111 24.71 13.98 39.88 3.16
1063 1092 1.195115 CGGTCATCCTCTTCTCCCAA 58.805 55.000 0.00 0.00 0.00 4.12
1276 1305 0.610687 CCAGAGAGGTTGAGTGTCCC 59.389 60.000 0.00 0.00 0.00 4.46
1360 1389 0.582005 GTGAGCGTGTTCAAGGACAC 59.418 55.000 1.42 1.42 44.97 3.67
1361 1390 0.176910 TGTGAGCGTGTTCAAGGACA 59.823 50.000 0.00 0.00 0.00 4.02
1362 1391 0.861837 CTGTGAGCGTGTTCAAGGAC 59.138 55.000 0.00 0.00 0.00 3.85
1363 1392 0.249868 CCTGTGAGCGTGTTCAAGGA 60.250 55.000 8.27 0.00 32.11 3.36
1364 1393 1.230635 CCCTGTGAGCGTGTTCAAGG 61.231 60.000 7.47 7.47 0.00 3.61
1365 1394 0.249868 TCCCTGTGAGCGTGTTCAAG 60.250 55.000 0.00 0.00 0.00 3.02
1366 1395 0.531974 GTCCCTGTGAGCGTGTTCAA 60.532 55.000 0.00 0.00 0.00 2.69
1367 1396 1.069090 GTCCCTGTGAGCGTGTTCA 59.931 57.895 0.00 0.00 0.00 3.18
1368 1397 2.022129 CGTCCCTGTGAGCGTGTTC 61.022 63.158 0.00 0.00 0.00 3.18
1369 1398 2.029073 CGTCCCTGTGAGCGTGTT 59.971 61.111 0.00 0.00 0.00 3.32
1370 1399 3.991051 CCGTCCCTGTGAGCGTGT 61.991 66.667 0.00 0.00 0.00 4.49
1371 1400 3.515316 AACCGTCCCTGTGAGCGTG 62.515 63.158 0.00 0.00 0.00 5.34
1372 1401 3.222354 GAACCGTCCCTGTGAGCGT 62.222 63.158 0.00 0.00 0.00 5.07
1373 1402 2.432628 GAACCGTCCCTGTGAGCG 60.433 66.667 0.00 0.00 0.00 5.03
1374 1403 2.047179 GGAACCGTCCCTGTGAGC 60.047 66.667 0.00 0.00 38.08 4.26
1375 1404 2.261671 CGGAACCGTCCCTGTGAG 59.738 66.667 4.99 0.00 41.44 3.51
1376 1405 3.998672 GCGGAACCGTCCCTGTGA 61.999 66.667 14.63 0.00 41.44 3.58
1379 1408 4.760047 CTGGCGGAACCGTCCCTG 62.760 72.222 15.12 8.52 44.19 4.45
1381 1410 4.011517 TTCTGGCGGAACCGTCCC 62.012 66.667 15.12 8.90 44.19 4.46
1382 1411 2.741211 GTTCTGGCGGAACCGTCC 60.741 66.667 25.44 15.47 46.17 4.79
1393 1422 0.390472 GAGAGGTTGCCGAGTTCTGG 60.390 60.000 0.00 0.00 0.00 3.86
1394 1423 0.390472 GGAGAGGTTGCCGAGTTCTG 60.390 60.000 0.00 0.00 0.00 3.02
1395 1424 0.543174 AGGAGAGGTTGCCGAGTTCT 60.543 55.000 0.00 0.00 0.00 3.01
1396 1425 1.135053 GTAGGAGAGGTTGCCGAGTTC 60.135 57.143 0.00 0.00 0.00 3.01
1397 1426 0.896226 GTAGGAGAGGTTGCCGAGTT 59.104 55.000 0.00 0.00 0.00 3.01
1398 1427 0.971447 GGTAGGAGAGGTTGCCGAGT 60.971 60.000 0.00 0.00 0.00 4.18
1399 1428 0.684805 AGGTAGGAGAGGTTGCCGAG 60.685 60.000 0.00 0.00 0.00 4.63
1400 1429 0.252103 AAGGTAGGAGAGGTTGCCGA 60.252 55.000 0.00 0.00 0.00 5.54
1401 1430 1.481871 TAAGGTAGGAGAGGTTGCCG 58.518 55.000 0.00 0.00 0.00 5.69
1402 1431 2.838813 ACTTAAGGTAGGAGAGGTTGCC 59.161 50.000 7.53 0.00 0.00 4.52
1403 1432 4.554960 AACTTAAGGTAGGAGAGGTTGC 57.445 45.455 7.53 0.00 0.00 4.17
1404 1433 6.361768 AGAAACTTAAGGTAGGAGAGGTTG 57.638 41.667 7.53 0.00 0.00 3.77
1405 1434 5.185442 CGAGAAACTTAAGGTAGGAGAGGTT 59.815 44.000 7.53 0.00 0.00 3.50
1406 1435 4.705991 CGAGAAACTTAAGGTAGGAGAGGT 59.294 45.833 7.53 0.00 0.00 3.85
1407 1436 4.948621 TCGAGAAACTTAAGGTAGGAGAGG 59.051 45.833 7.53 0.00 0.00 3.69
1408 1437 6.095720 ACATCGAGAAACTTAAGGTAGGAGAG 59.904 42.308 7.53 0.00 0.00 3.20
1409 1438 5.950549 ACATCGAGAAACTTAAGGTAGGAGA 59.049 40.000 7.53 0.00 0.00 3.71
1410 1439 6.037098 CACATCGAGAAACTTAAGGTAGGAG 58.963 44.000 7.53 0.00 0.00 3.69
1411 1440 5.479375 ACACATCGAGAAACTTAAGGTAGGA 59.521 40.000 7.53 0.00 0.00 2.94
1412 1441 5.721232 ACACATCGAGAAACTTAAGGTAGG 58.279 41.667 7.53 0.00 0.00 3.18
1413 1442 5.805994 GGACACATCGAGAAACTTAAGGTAG 59.194 44.000 7.53 0.00 0.00 3.18
1414 1443 5.479375 AGGACACATCGAGAAACTTAAGGTA 59.521 40.000 7.53 0.00 0.00 3.08
1415 1444 4.283722 AGGACACATCGAGAAACTTAAGGT 59.716 41.667 7.53 0.00 0.00 3.50
1416 1445 4.822026 AGGACACATCGAGAAACTTAAGG 58.178 43.478 7.53 0.00 0.00 2.69
1417 1446 5.926542 TCAAGGACACATCGAGAAACTTAAG 59.073 40.000 0.00 0.00 0.00 1.85
1418 1447 5.849510 TCAAGGACACATCGAGAAACTTAA 58.150 37.500 0.00 0.00 0.00 1.85
1419 1448 5.462530 TCAAGGACACATCGAGAAACTTA 57.537 39.130 0.00 0.00 0.00 2.24
1420 1449 4.336889 TCAAGGACACATCGAGAAACTT 57.663 40.909 0.00 0.00 0.00 2.66
1421 1450 4.058817 GTTCAAGGACACATCGAGAAACT 58.941 43.478 0.00 0.00 0.00 2.66
1422 1451 3.807622 TGTTCAAGGACACATCGAGAAAC 59.192 43.478 0.00 0.00 0.00 2.78
1423 1452 4.066646 TGTTCAAGGACACATCGAGAAA 57.933 40.909 0.00 0.00 0.00 2.52
1424 1453 3.744238 TGTTCAAGGACACATCGAGAA 57.256 42.857 0.00 0.00 0.00 2.87
1542 1571 1.072505 GCGGGACAGGTTTCCAAGA 59.927 57.895 0.00 0.00 37.40 3.02
1623 1652 1.008995 GATGCCGAGTCTCGAGAGC 60.009 63.158 23.74 16.14 43.74 4.09
1636 1665 0.891449 TCGGAGAGATCGAGGATGCC 60.891 60.000 0.00 0.00 32.51 4.40
1689 1718 1.003355 CAGCCGAGAAAGCTTCCCA 60.003 57.895 0.00 0.00 38.95 4.37
1738 1767 0.689745 TCCACCGGAATCGATCCCTT 60.690 55.000 9.46 0.00 46.39 3.95
1797 1826 1.071471 CCCGCAGAGGTTGTTGTCT 59.929 57.895 0.00 0.00 38.74 3.41
1882 1911 3.467226 GGGGATCTCGCCGTCCAA 61.467 66.667 0.00 0.00 39.23 3.53
1904 1933 3.721370 GGGAGTGGGCAATCCGCAT 62.721 63.158 0.00 0.00 45.86 4.73
1905 1934 4.424711 GGGAGTGGGCAATCCGCA 62.425 66.667 0.00 0.00 45.86 5.69
2047 2076 3.695830 ACCACTAAACATGTCATCCGT 57.304 42.857 0.00 0.00 0.00 4.69
2061 2090 1.493446 TCGAGGCTCCTCATACCACTA 59.507 52.381 15.52 0.00 42.86 2.74
2064 2093 0.259065 ACTCGAGGCTCCTCATACCA 59.741 55.000 18.41 0.00 42.86 3.25
2169 2198 1.002868 GCTGAGCTCTTTCAGGCCA 60.003 57.895 16.19 0.00 43.80 5.36
2178 2207 0.467106 TCCTAGCGATGCTGAGCTCT 60.467 55.000 16.19 0.00 43.44 4.09
2530 2559 5.357314 AGAGGTCAAGATTTTGCATCATCAG 59.643 40.000 8.05 1.68 34.21 2.90
2640 2669 1.115326 TCATCGGGATCGCACCAGAT 61.115 55.000 10.70 7.30 43.43 2.90
2646 2675 1.367471 GATGGTCATCGGGATCGCA 59.633 57.895 10.70 0.00 36.13 5.10
2665 2694 1.144936 GCAGCCTAACCATCTCGCT 59.855 57.895 0.00 0.00 0.00 4.93
2742 2771 1.134965 AGGTACTTGAGCTCGATGCAC 60.135 52.381 9.64 5.33 39.60 4.57
2992 3093 1.219664 CCACTCGCCGGTTATGGAA 59.780 57.895 1.90 0.00 31.69 3.53
3076 3177 2.989824 CCTGTCTCGTCCCACGGT 60.990 66.667 0.00 0.00 42.81 4.83
3153 3290 3.599584 TCGTAGAGCTCCCGTTGG 58.400 61.111 19.26 1.77 0.00 3.77
3232 3369 2.264794 GTCACGGAGCGTCCCATT 59.735 61.111 0.00 0.00 38.32 3.16
3261 3398 3.611674 TCGAGCACCTTGACGGCA 61.612 61.111 0.00 0.00 35.61 5.69
3705 3851 2.298163 CACAGAGCCTTGCAAAAATCCT 59.702 45.455 0.00 0.00 0.00 3.24
3711 3857 2.202395 GCCCACAGAGCCTTGCAAA 61.202 57.895 0.00 0.00 0.00 3.68
3754 3901 9.926751 CTCATATGCCATGTTAATTCGATTATC 57.073 33.333 0.00 0.00 0.00 1.75
3756 3903 8.846943 ACTCATATGCCATGTTAATTCGATTA 57.153 30.769 0.00 0.00 0.00 1.75
3771 3918 4.645535 TGCATTTCCTCTACTCATATGCC 58.354 43.478 0.00 0.00 36.87 4.40
3784 3931 5.421056 AGAATGTTGATCACATGCATTTCCT 59.579 36.000 14.80 7.45 46.23 3.36
3786 3933 7.033791 AGAAGAATGTTGATCACATGCATTTC 58.966 34.615 14.80 11.43 46.23 2.17
3842 4011 4.501915 CCAAGTCCGTACTCTAAAACCACA 60.502 45.833 0.00 0.00 33.75 4.17
3863 4032 3.319198 GTCGAAGGGTGGCCTCCA 61.319 66.667 24.81 1.17 0.00 3.86
3902 4071 2.920384 TCCAGTAGCACCACGCCA 60.920 61.111 0.00 0.00 44.04 5.69
3971 4140 1.603455 CCTCACCCAACCGTGCAAT 60.603 57.895 0.00 0.00 33.57 3.56
3990 4165 3.978193 GTCATGGGGGTGGTGCCA 61.978 66.667 0.00 0.00 39.65 4.92
4001 4176 0.253894 TGATGGCTGTGAGGTCATGG 59.746 55.000 0.00 0.00 31.13 3.66
4013 4188 0.538584 TTGACTCTGCGATGATGGCT 59.461 50.000 0.29 0.00 0.00 4.75
4026 4201 2.706339 ATGGTCTCCAGCATTGACTC 57.294 50.000 0.00 0.00 37.46 3.36
4032 4207 1.410517 CGTGTCTATGGTCTCCAGCAT 59.589 52.381 0.00 0.00 43.37 3.79
4039 4214 3.427638 CGACAACATCGTGTCTATGGTCT 60.428 47.826 4.03 0.00 46.25 3.85
4041 4216 2.876091 CGACAACATCGTGTCTATGGT 58.124 47.619 4.03 0.00 46.25 3.55
4097 4272 2.579201 CACGCGATCCCAAGGTCT 59.421 61.111 15.93 0.00 0.00 3.85
4187 4362 4.809426 CCACAAGTACGTCAAGAAGAAGTT 59.191 41.667 0.00 0.00 39.68 2.66
4188 4363 4.142004 ACCACAAGTACGTCAAGAAGAAGT 60.142 41.667 0.00 0.00 41.86 3.01
4196 4371 3.435105 ACGTAACCACAAGTACGTCAA 57.565 42.857 0.00 0.00 44.48 3.18
4274 4457 2.882761 CGACTATCTTCATACCCGGACA 59.117 50.000 0.73 0.00 0.00 4.02
4280 4465 6.183360 ACAAACCCTACGACTATCTTCATACC 60.183 42.308 0.00 0.00 0.00 2.73
4281 4466 6.696148 CACAAACCCTACGACTATCTTCATAC 59.304 42.308 0.00 0.00 0.00 2.39
4296 4481 2.487625 CCCGAGTTTTCCACAAACCCTA 60.488 50.000 0.00 0.00 0.00 3.53
4330 4515 4.040339 TCTTGTTACTTGCACATCTCCTCA 59.960 41.667 0.00 0.00 0.00 3.86
4331 4516 4.569943 TCTTGTTACTTGCACATCTCCTC 58.430 43.478 0.00 0.00 0.00 3.71
4376 4561 9.245962 CGTACAAGGATATTTTCTAACCTGTAG 57.754 37.037 0.00 0.00 0.00 2.74
4380 4565 8.316214 TCAACGTACAAGGATATTTTCTAACCT 58.684 33.333 0.00 0.00 0.00 3.50
4390 4575 7.732025 TCAATACCATCAACGTACAAGGATAT 58.268 34.615 0.00 0.00 0.00 1.63
4430 4623 5.817296 CCCGGGGTAACAGTTTAACTATAAC 59.183 44.000 14.71 0.00 39.74 1.89
4459 4662 5.981315 GCTCATGTGCTTATACAATTGCATT 59.019 36.000 12.42 0.00 37.76 3.56
4466 4669 2.560504 CCGGCTCATGTGCTTATACAA 58.439 47.619 18.44 0.00 33.69 2.41
4467 4670 1.202639 CCCGGCTCATGTGCTTATACA 60.203 52.381 18.44 0.00 34.63 2.29
4468 4671 1.512926 CCCGGCTCATGTGCTTATAC 58.487 55.000 18.44 1.76 0.00 1.47
4469 4672 0.396435 CCCCGGCTCATGTGCTTATA 59.604 55.000 18.44 0.00 0.00 0.98
4470 4673 1.149174 CCCCGGCTCATGTGCTTAT 59.851 57.895 18.44 0.00 0.00 1.73
4471 4674 2.589540 CCCCGGCTCATGTGCTTA 59.410 61.111 18.44 0.00 0.00 3.09
4482 4685 2.242797 AAATTGCATCAAGCCCCGGC 62.243 55.000 0.00 0.00 44.83 6.13
4483 4686 0.460635 CAAATTGCATCAAGCCCCGG 60.461 55.000 0.00 0.00 44.83 5.73
4484 4687 0.247185 ACAAATTGCATCAAGCCCCG 59.753 50.000 0.00 0.00 44.83 5.73
4485 4688 3.825143 ATACAAATTGCATCAAGCCCC 57.175 42.857 0.00 0.00 44.83 5.80
4486 4689 4.746611 GCTTATACAAATTGCATCAAGCCC 59.253 41.667 9.57 0.00 44.83 5.19
4487 4690 5.232838 GTGCTTATACAAATTGCATCAAGCC 59.767 40.000 14.94 7.05 44.83 4.35
4488 4691 5.806502 TGTGCTTATACAAATTGCATCAAGC 59.193 36.000 12.32 12.32 45.96 4.01
4489 4692 7.703197 TCATGTGCTTATACAAATTGCATCAAG 59.297 33.333 0.00 0.00 36.04 3.02
4490 4693 7.488792 GTCATGTGCTTATACAAATTGCATCAA 59.511 33.333 0.00 0.00 36.04 2.57
4491 4694 6.974048 GTCATGTGCTTATACAAATTGCATCA 59.026 34.615 0.00 0.00 36.04 3.07
4492 4695 6.418819 GGTCATGTGCTTATACAAATTGCATC 59.581 38.462 0.00 0.00 36.04 3.91
4493 4696 6.275335 GGTCATGTGCTTATACAAATTGCAT 58.725 36.000 0.00 0.00 36.04 3.96
4494 4697 5.394005 GGGTCATGTGCTTATACAAATTGCA 60.394 40.000 0.00 0.00 33.69 4.08
4495 4698 5.043248 GGGTCATGTGCTTATACAAATTGC 58.957 41.667 0.00 0.00 33.69 3.56
4496 4699 5.273170 CGGGTCATGTGCTTATACAAATTG 58.727 41.667 0.00 0.00 33.69 2.32
4497 4700 4.338118 CCGGGTCATGTGCTTATACAAATT 59.662 41.667 0.00 0.00 33.69 1.82
4498 4701 3.882888 CCGGGTCATGTGCTTATACAAAT 59.117 43.478 0.00 0.00 33.69 2.32
4499 4702 3.275143 CCGGGTCATGTGCTTATACAAA 58.725 45.455 0.00 0.00 33.69 2.83
4571 4774 9.405587 ACACAATACAAAATACAAATGCACTAC 57.594 29.630 0.00 0.00 0.00 2.73
4572 4775 9.404348 CACACAATACAAAATACAAATGCACTA 57.596 29.630 0.00 0.00 0.00 2.74
4573 4776 7.925483 ACACACAATACAAAATACAAATGCACT 59.075 29.630 0.00 0.00 0.00 4.40
4574 4777 8.071122 ACACACAATACAAAATACAAATGCAC 57.929 30.769 0.00 0.00 0.00 4.57
4575 4778 9.750125 TTACACACAATACAAAATACAAATGCA 57.250 25.926 0.00 0.00 0.00 3.96
4599 4810 9.763465 CGAAACTTTTTACACTCTGTCTTTTTA 57.237 29.630 0.00 0.00 0.00 1.52
4605 4816 5.277202 GGGACGAAACTTTTTACACTCTGTC 60.277 44.000 0.00 0.00 0.00 3.51
4608 4819 5.032327 AGGGACGAAACTTTTTACACTCT 57.968 39.130 0.00 0.00 0.00 3.24
4609 4820 6.481313 AGTTAGGGACGAAACTTTTTACACTC 59.519 38.462 0.00 0.00 36.33 3.51
4647 4858 9.555727 TGCAAGTTCAACTATAGTACTTCTTTT 57.444 29.630 14.09 0.00 0.00 2.27
4648 4859 9.555727 TTGCAAGTTCAACTATAGTACTTCTTT 57.444 29.630 14.09 1.16 0.00 2.52
4649 4860 8.989980 GTTGCAAGTTCAACTATAGTACTTCTT 58.010 33.333 14.09 10.41 42.15 2.52
4650 4861 7.603024 GGTTGCAAGTTCAACTATAGTACTTCT 59.397 37.037 14.09 5.89 44.19 2.85
4651 4862 7.603024 AGGTTGCAAGTTCAACTATAGTACTTC 59.397 37.037 14.09 10.72 44.19 3.01
4652 4863 7.450903 AGGTTGCAAGTTCAACTATAGTACTT 58.549 34.615 5.65 9.55 44.19 2.24
4653 4864 7.005709 AGGTTGCAAGTTCAACTATAGTACT 57.994 36.000 5.65 3.32 44.19 2.73
4654 4865 7.668525 AAGGTTGCAAGTTCAACTATAGTAC 57.331 36.000 5.65 0.73 44.19 2.73
4655 4866 8.685838 AAAAGGTTGCAAGTTCAACTATAGTA 57.314 30.769 5.65 0.00 44.19 1.82
4656 4867 7.582667 AAAAGGTTGCAAGTTCAACTATAGT 57.417 32.000 0.00 0.00 44.19 2.12
4659 4870 8.088365 GGAATAAAAGGTTGCAAGTTCAACTAT 58.912 33.333 0.00 5.62 44.19 2.12
4660 4871 7.068839 TGGAATAAAAGGTTGCAAGTTCAACTA 59.931 33.333 0.00 4.14 44.19 2.24
4661 4872 6.127196 TGGAATAAAAGGTTGCAAGTTCAACT 60.127 34.615 0.00 0.00 44.19 3.16
4662 4873 6.019075 GTGGAATAAAAGGTTGCAAGTTCAAC 60.019 38.462 0.00 8.72 44.07 3.18
4663 4874 6.045955 GTGGAATAAAAGGTTGCAAGTTCAA 58.954 36.000 0.00 0.00 0.00 2.69
4664 4875 5.596845 GTGGAATAAAAGGTTGCAAGTTCA 58.403 37.500 0.00 0.00 0.00 3.18
4665 4876 4.679654 CGTGGAATAAAAGGTTGCAAGTTC 59.320 41.667 0.00 0.00 0.00 3.01
4666 4877 4.339814 TCGTGGAATAAAAGGTTGCAAGTT 59.660 37.500 0.00 0.00 30.86 2.66
4667 4878 3.886505 TCGTGGAATAAAAGGTTGCAAGT 59.113 39.130 0.00 0.00 30.86 3.16
4668 4879 4.497473 TCGTGGAATAAAAGGTTGCAAG 57.503 40.909 0.00 0.00 0.00 4.01
4669 4880 4.804108 CATCGTGGAATAAAAGGTTGCAA 58.196 39.130 0.00 0.00 0.00 4.08
4670 4881 3.366883 GCATCGTGGAATAAAAGGTTGCA 60.367 43.478 0.00 0.00 30.88 4.08
4671 4882 3.179048 GCATCGTGGAATAAAAGGTTGC 58.821 45.455 0.00 0.00 0.00 4.17
4672 4883 3.730662 CGGCATCGTGGAATAAAAGGTTG 60.731 47.826 0.00 0.00 0.00 3.77
4673 4884 2.422127 CGGCATCGTGGAATAAAAGGTT 59.578 45.455 0.00 0.00 0.00 3.50
4674 4885 2.014128 CGGCATCGTGGAATAAAAGGT 58.986 47.619 0.00 0.00 0.00 3.50
4675 4886 1.268539 GCGGCATCGTGGAATAAAAGG 60.269 52.381 0.00 0.00 38.89 3.11
4676 4887 1.400142 TGCGGCATCGTGGAATAAAAG 59.600 47.619 0.00 0.00 38.89 2.27
4677 4888 1.400142 CTGCGGCATCGTGGAATAAAA 59.600 47.619 1.75 0.00 38.89 1.52
4678 4889 1.013596 CTGCGGCATCGTGGAATAAA 58.986 50.000 1.75 0.00 38.89 1.40
4679 4890 1.436195 GCTGCGGCATCGTGGAATAA 61.436 55.000 14.08 0.00 38.89 1.40
4680 4891 1.887242 GCTGCGGCATCGTGGAATA 60.887 57.895 14.08 0.00 38.89 1.75
4681 4892 3.204827 GCTGCGGCATCGTGGAAT 61.205 61.111 14.08 0.00 38.89 3.01
4682 4893 4.695993 TGCTGCGGCATCGTGGAA 62.696 61.111 18.37 0.00 44.28 3.53
4728 4939 9.944376 AGCAAAACTGTTAATTATCTCTACTGA 57.056 29.630 0.00 0.00 0.00 3.41
4739 4950 8.850156 AGATGAGTTGTAGCAAAACTGTTAATT 58.150 29.630 3.72 0.00 37.98 1.40
4740 4951 8.396272 AGATGAGTTGTAGCAAAACTGTTAAT 57.604 30.769 3.72 0.00 37.98 1.40
4741 4952 7.801716 AGATGAGTTGTAGCAAAACTGTTAA 57.198 32.000 3.72 0.00 37.98 2.01
4742 4953 8.364894 TCTAGATGAGTTGTAGCAAAACTGTTA 58.635 33.333 3.72 0.00 37.98 2.41
4743 4954 7.217200 TCTAGATGAGTTGTAGCAAAACTGTT 58.783 34.615 3.72 0.00 37.98 3.16
4744 4955 6.759272 TCTAGATGAGTTGTAGCAAAACTGT 58.241 36.000 3.72 0.00 37.98 3.55
4745 4956 7.547019 TCATCTAGATGAGTTGTAGCAAAACTG 59.453 37.037 27.93 1.46 42.42 3.16
4746 4957 7.615403 TCATCTAGATGAGTTGTAGCAAAACT 58.385 34.615 27.93 0.00 42.42 2.66
4747 4958 7.834068 TCATCTAGATGAGTTGTAGCAAAAC 57.166 36.000 27.93 0.00 42.42 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.