Multiple sequence alignment - TraesCS4A01G472800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G472800 chr4A 100.000 3365 0 0 1 3365 732812584 732815948 0.000000e+00 6215.0
1 TraesCS4A01G472800 chr4A 89.972 1077 54 17 1429 2499 731973569 731972541 0.000000e+00 1341.0
2 TraesCS4A01G472800 chr4A 89.572 748 29 6 631 1340 731985022 731984286 0.000000e+00 904.0
3 TraesCS4A01G472800 chr4A 92.163 319 22 2 3045 3360 731955823 731955505 6.620000e-122 448.0
4 TraesCS4A01G472800 chr4A 88.070 285 12 4 2792 3054 731966753 731966469 5.420000e-83 318.0
5 TraesCS4A01G472800 chr4A 96.190 105 4 0 2681 2785 731972153 731972049 4.460000e-39 172.0
6 TraesCS4A01G472800 chr4A 80.102 196 26 10 2815 2999 572242614 572242807 2.110000e-27 134.0
7 TraesCS4A01G472800 chr4A 90.385 104 6 3 2495 2598 681667330 681667429 2.110000e-27 134.0
8 TraesCS4A01G472800 chr7D 92.008 2027 102 21 491 2473 7493906 7495916 0.000000e+00 2791.0
9 TraesCS4A01G472800 chr7D 84.440 482 36 15 2771 3215 7496125 7496604 3.990000e-119 438.0
10 TraesCS4A01G472800 chr7D 87.417 151 15 4 3211 3357 320212093 320211943 1.610000e-38 171.0
11 TraesCS4A01G472800 chr7D 90.265 113 4 5 2679 2784 7495999 7496111 1.260000e-29 141.0
12 TraesCS4A01G472800 chr7D 91.837 98 4 3 2487 2584 163634823 163634730 2.110000e-27 134.0
13 TraesCS4A01G472800 chr7D 92.308 91 3 3 2494 2584 311872939 311872853 3.520000e-25 126.0
14 TraesCS4A01G472800 chr7A 90.777 1789 98 22 636 2372 8528754 8530527 0.000000e+00 2327.0
15 TraesCS4A01G472800 chr7A 85.554 623 41 24 767 1368 8525568 8526162 1.030000e-169 606.0
16 TraesCS4A01G472800 chr7A 86.237 574 40 15 2679 3215 8530759 8531330 1.350000e-163 586.0
17 TraesCS4A01G472800 chr7A 85.075 134 14 5 2870 2998 683966155 683966023 7.580000e-27 132.0
18 TraesCS4A01G472800 chr1B 94.595 481 23 2 1 481 543093535 543093058 0.000000e+00 741.0
19 TraesCS4A01G472800 chr2B 94.351 478 26 1 1 478 598639534 598639058 0.000000e+00 732.0
20 TraesCS4A01G472800 chr2B 93.983 482 23 4 1 478 590948897 590948418 0.000000e+00 725.0
21 TraesCS4A01G472800 chr2B 87.387 111 7 6 2492 2599 751263567 751263673 1.640000e-23 121.0
22 TraesCS4A01G472800 chr5B 94.351 478 24 2 1 478 229277902 229278376 0.000000e+00 730.0
23 TraesCS4A01G472800 chr5B 93.568 482 29 2 1 482 654145865 654146344 0.000000e+00 717.0
24 TraesCS4A01G472800 chr5B 100.000 28 0 0 583 610 460263247 460263220 6.000000e-03 52.8
25 TraesCS4A01G472800 chr5D 94.142 478 25 2 1 478 413848738 413849212 0.000000e+00 725.0
26 TraesCS4A01G472800 chr5D 89.941 169 16 1 3047 3215 287745876 287745709 2.030000e-52 217.0
27 TraesCS4A01G472800 chr5D 89.189 148 13 2 3213 3357 495855750 495855603 7.420000e-42 182.0
28 TraesCS4A01G472800 chr5D 86.709 158 16 4 2844 2998 342835694 342835849 1.610000e-38 171.0
29 TraesCS4A01G472800 chr3B 93.946 479 25 3 1 478 245130380 245129905 0.000000e+00 721.0
30 TraesCS4A01G472800 chr3B 74.212 888 151 41 1489 2337 675559933 675560781 1.960000e-77 300.0
31 TraesCS4A01G472800 chr3B 91.837 98 3 4 2496 2592 130628255 130628348 7.580000e-27 132.0
32 TraesCS4A01G472800 chr3B 82.734 139 20 4 2825 2960 598006607 598006744 1.640000e-23 121.0
33 TraesCS4A01G472800 chr3D 93.933 478 26 2 1 478 567672785 567673259 0.000000e+00 719.0
34 TraesCS4A01G472800 chr3D 74.657 801 139 43 1484 2246 512908196 512908970 2.540000e-76 296.0
35 TraesCS4A01G472800 chr7B 93.568 482 29 2 1 482 659988908 659988429 0.000000e+00 717.0
36 TraesCS4A01G472800 chr7B 88.757 169 18 1 3045 3213 233369692 233369859 4.400000e-49 206.0
37 TraesCS4A01G472800 chr7B 74.026 462 94 14 1773 2212 60679933 60679476 7.470000e-37 165.0
38 TraesCS4A01G472800 chr7B 87.850 107 8 4 2482 2587 451446866 451446968 1.640000e-23 121.0
39 TraesCS4A01G472800 chr7B 93.333 45 3 0 3005 3049 233369638 233369682 2.170000e-07 67.6
40 TraesCS4A01G472800 chr5A 87.783 221 16 4 3005 3215 380046197 380045978 7.210000e-62 248.0
41 TraesCS4A01G472800 chr5A 88.024 167 18 2 3045 3211 562426377 562426541 2.650000e-46 196.0
42 TraesCS4A01G472800 chr5A 86.538 156 17 3 3205 3357 512225989 512225835 5.770000e-38 169.0
43 TraesCS4A01G472800 chr5A 85.526 152 14 4 2816 2960 502307164 502307314 5.820000e-33 152.0
44 TraesCS4A01G472800 chr6B 91.716 169 13 1 3047 3215 29069847 29069680 2.020000e-57 233.0
45 TraesCS4A01G472800 chr6B 86.076 158 19 2 3211 3365 664267626 664267783 2.080000e-37 167.0
46 TraesCS4A01G472800 chr3A 73.116 796 142 38 1484 2246 648493915 648494671 5.650000e-53 219.0
47 TraesCS4A01G472800 chr3A 87.417 151 15 3 3211 3357 410683206 410683056 1.610000e-38 171.0
48 TraesCS4A01G472800 chr3A 86.726 113 7 7 2491 2600 72473621 72473514 5.900000e-23 119.0
49 TraesCS4A01G472800 chr6D 86.705 173 13 8 3045 3216 27479294 27479457 2.060000e-42 183.0
50 TraesCS4A01G472800 chr1D 87.179 156 17 2 3213 3365 418878801 418878956 1.240000e-39 174.0
51 TraesCS4A01G472800 chr1D 82.234 197 22 7 2815 2999 381962576 381962381 1.250000e-34 158.0
52 TraesCS4A01G472800 chrUn 87.417 151 16 2 3210 3357 105423939 105424089 1.610000e-38 171.0
53 TraesCS4A01G472800 chr2D 86.076 158 19 2 3211 3365 558801620 558801463 2.080000e-37 167.0
54 TraesCS4A01G472800 chr4D 84.000 150 20 4 2853 2999 30663571 30663423 1.260000e-29 141.0
55 TraesCS4A01G472800 chr1A 90.654 107 4 5 2498 2603 52572366 52572265 1.630000e-28 137.0
56 TraesCS4A01G472800 chr4B 86.441 118 5 8 2498 2611 443547445 443547335 5.900000e-23 119.0
57 TraesCS4A01G472800 chr4B 78.836 189 31 8 2029 2211 581925066 581925251 5.900000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G472800 chr4A 732812584 732815948 3364 False 6215.000000 6215 100.000000 1 3365 1 chr4A.!!$F3 3364
1 TraesCS4A01G472800 chr4A 731984286 731985022 736 True 904.000000 904 89.572000 631 1340 1 chr4A.!!$R3 709
2 TraesCS4A01G472800 chr4A 731972049 731973569 1520 True 756.500000 1341 93.081000 1429 2785 2 chr4A.!!$R4 1356
3 TraesCS4A01G472800 chr7D 7493906 7496604 2698 False 1123.333333 2791 88.904333 491 3215 3 chr7D.!!$F1 2724
4 TraesCS4A01G472800 chr7A 8525568 8531330 5762 False 1173.000000 2327 87.522667 636 3215 3 chr7A.!!$F1 2579
5 TraesCS4A01G472800 chr3B 675559933 675560781 848 False 300.000000 300 74.212000 1489 2337 1 chr3B.!!$F3 848
6 TraesCS4A01G472800 chr3D 512908196 512908970 774 False 296.000000 296 74.657000 1484 2246 1 chr3D.!!$F1 762
7 TraesCS4A01G472800 chr3A 648493915 648494671 756 False 219.000000 219 73.116000 1484 2246 1 chr3A.!!$F1 762

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 443 0.032813 CGGAGGGGACTAGGGTTGTA 60.033 60.0 0.00 0.0 44.43 2.41 F
705 3257 0.455410 TCACAAAAAGCAAGCGCACT 59.545 45.0 11.47 0.0 42.27 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 4589 0.252479 ACCTTCTGCTGCAGGATCTG 59.748 55.0 27.79 13.97 33.9 2.9 R
2492 5154 0.917533 AGAGCGGAGGGAGTAGTACA 59.082 55.0 2.52 0.00 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.336581 CGAAGCCGCCGAATATGA 57.663 55.556 0.00 0.00 0.00 2.15
40 41 0.934496 CGAAGCCGCCGAATATGAAA 59.066 50.000 0.00 0.00 0.00 2.69
41 42 1.329292 CGAAGCCGCCGAATATGAAAA 59.671 47.619 0.00 0.00 0.00 2.29
42 43 2.032030 CGAAGCCGCCGAATATGAAAAT 60.032 45.455 0.00 0.00 0.00 1.82
44 45 2.851195 AGCCGCCGAATATGAAAATCT 58.149 42.857 0.00 0.00 0.00 2.40
47 48 3.607078 GCCGCCGAATATGAAAATCTGTC 60.607 47.826 0.00 0.00 0.00 3.51
48 49 3.058914 CCGCCGAATATGAAAATCTGTCC 60.059 47.826 0.00 0.00 0.00 4.02
49 50 3.362986 CGCCGAATATGAAAATCTGTCCG 60.363 47.826 0.00 0.00 0.00 4.79
50 51 3.058914 GCCGAATATGAAAATCTGTCCGG 60.059 47.826 0.00 0.00 36.63 5.14
52 53 3.498397 CGAATATGAAAATCTGTCCGGGG 59.502 47.826 0.00 0.00 0.00 5.73
53 54 4.714632 GAATATGAAAATCTGTCCGGGGA 58.285 43.478 0.00 0.00 0.00 4.81
64 65 3.490851 CCGGGGAGGAAAACCTCA 58.509 61.111 16.44 0.00 45.00 3.86
65 66 1.002502 CCGGGGAGGAAAACCTCAC 60.003 63.158 16.44 13.29 45.00 3.51
70 71 1.547901 GGGAGGAAAACCTCACCTTGG 60.548 57.143 16.44 0.00 38.48 3.61
71 72 1.423921 GGAGGAAAACCTCACCTTGGA 59.576 52.381 16.44 0.00 38.48 3.53
72 73 2.505405 GAGGAAAACCTCACCTTGGAC 58.495 52.381 10.86 0.00 36.86 4.02
73 74 2.106684 GAGGAAAACCTCACCTTGGACT 59.893 50.000 10.86 0.00 36.86 3.85
74 75 2.158608 AGGAAAACCTCACCTTGGACTG 60.159 50.000 0.00 0.00 0.00 3.51
75 76 1.609072 GAAAACCTCACCTTGGACTGC 59.391 52.381 0.00 0.00 0.00 4.40
76 77 0.550914 AAACCTCACCTTGGACTGCA 59.449 50.000 0.00 0.00 0.00 4.41
77 78 0.773644 AACCTCACCTTGGACTGCAT 59.226 50.000 0.00 0.00 0.00 3.96
79 80 1.171308 CCTCACCTTGGACTGCATTG 58.829 55.000 0.00 0.00 0.00 2.82
80 81 1.546323 CCTCACCTTGGACTGCATTGT 60.546 52.381 0.00 0.00 0.00 2.71
82 83 1.955778 TCACCTTGGACTGCATTGTTG 59.044 47.619 0.00 0.00 0.00 3.33
83 84 1.682854 CACCTTGGACTGCATTGTTGT 59.317 47.619 0.00 0.00 0.00 3.32
84 85 1.682854 ACCTTGGACTGCATTGTTGTG 59.317 47.619 0.00 0.00 0.00 3.33
85 86 1.000060 CCTTGGACTGCATTGTTGTGG 60.000 52.381 0.00 0.00 0.00 4.17
86 87 1.955778 CTTGGACTGCATTGTTGTGGA 59.044 47.619 0.00 0.00 0.00 4.02
87 88 2.291209 TGGACTGCATTGTTGTGGAT 57.709 45.000 0.00 0.00 0.00 3.41
88 89 1.887854 TGGACTGCATTGTTGTGGATG 59.112 47.619 0.00 0.00 0.00 3.51
89 90 2.161855 GGACTGCATTGTTGTGGATGA 58.838 47.619 0.00 0.00 0.00 2.92
90 91 2.756760 GGACTGCATTGTTGTGGATGAT 59.243 45.455 0.00 0.00 0.00 2.45
91 92 3.194116 GGACTGCATTGTTGTGGATGATT 59.806 43.478 0.00 0.00 0.00 2.57
92 93 4.171005 GACTGCATTGTTGTGGATGATTG 58.829 43.478 0.00 0.00 0.00 2.67
94 95 4.171005 CTGCATTGTTGTGGATGATTGAC 58.829 43.478 0.00 0.00 0.00 3.18
95 96 3.173599 GCATTGTTGTGGATGATTGACG 58.826 45.455 0.00 0.00 0.00 4.35
96 97 3.761657 CATTGTTGTGGATGATTGACGG 58.238 45.455 0.00 0.00 0.00 4.79
97 98 2.849294 TGTTGTGGATGATTGACGGA 57.151 45.000 0.00 0.00 0.00 4.69
98 99 2.698803 TGTTGTGGATGATTGACGGAG 58.301 47.619 0.00 0.00 0.00 4.63
99 100 1.398390 GTTGTGGATGATTGACGGAGC 59.602 52.381 0.00 0.00 0.00 4.70
100 101 0.107703 TGTGGATGATTGACGGAGCC 60.108 55.000 0.00 0.00 0.00 4.70
103 104 1.202687 TGGATGATTGACGGAGCCATC 60.203 52.381 0.00 0.00 34.48 3.51
105 106 2.564771 GATGATTGACGGAGCCATCAA 58.435 47.619 0.09 0.09 39.09 2.57
106 107 2.488204 TGATTGACGGAGCCATCAAA 57.512 45.000 1.87 0.00 38.29 2.69
107 108 2.083774 TGATTGACGGAGCCATCAAAC 58.916 47.619 1.87 0.60 38.29 2.93
108 109 1.401905 GATTGACGGAGCCATCAAACC 59.598 52.381 1.87 0.00 38.29 3.27
109 110 0.400213 TTGACGGAGCCATCAAACCT 59.600 50.000 0.00 0.00 31.95 3.50
110 111 0.400213 TGACGGAGCCATCAAACCTT 59.600 50.000 0.00 0.00 0.00 3.50
111 112 1.202879 TGACGGAGCCATCAAACCTTT 60.203 47.619 0.00 0.00 0.00 3.11
113 114 1.613437 ACGGAGCCATCAAACCTTTTG 59.387 47.619 0.00 0.00 0.00 2.44
126 127 1.157870 CCTTTTGGTGACGACGCAGT 61.158 55.000 0.00 0.00 38.21 4.40
146 147 4.152607 GTGGAACTCTCAATGAAAGCAC 57.847 45.455 0.00 0.00 0.00 4.40
147 148 3.057946 GTGGAACTCTCAATGAAAGCACC 60.058 47.826 0.00 0.00 0.00 5.01
151 152 4.778534 ACTCTCAATGAAAGCACCAATG 57.221 40.909 0.00 0.00 0.00 2.82
152 153 4.147321 ACTCTCAATGAAAGCACCAATGT 58.853 39.130 0.00 0.00 0.00 2.71
155 156 2.228582 TCAATGAAAGCACCAATGTCGG 59.771 45.455 0.00 0.00 0.00 4.79
156 157 1.909700 ATGAAAGCACCAATGTCGGT 58.090 45.000 0.00 0.00 41.07 4.69
165 166 1.679153 ACCAATGTCGGTGTCAAAACC 59.321 47.619 0.00 0.00 38.07 3.27
171 172 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
172 173 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
173 174 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
175 176 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
176 177 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
181 182 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
182 183 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
188 189 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
198 199 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
200 201 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
201 202 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
202 203 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
203 204 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
204 205 0.038892 GTCCCGAACTGTGCGTCTAA 60.039 55.000 7.51 0.00 0.00 2.10
205 206 0.242825 TCCCGAACTGTGCGTCTAAG 59.757 55.000 7.51 0.00 0.00 2.18
206 207 0.736325 CCCGAACTGTGCGTCTAAGG 60.736 60.000 7.51 0.00 0.00 2.69
207 208 0.038526 CCGAACTGTGCGTCTAAGGT 60.039 55.000 7.51 0.00 0.00 3.50
208 209 1.604693 CCGAACTGTGCGTCTAAGGTT 60.605 52.381 7.51 0.00 0.00 3.50
209 210 1.455786 CGAACTGTGCGTCTAAGGTTG 59.544 52.381 0.00 0.00 0.00 3.77
210 211 2.750948 GAACTGTGCGTCTAAGGTTGA 58.249 47.619 0.00 0.00 0.00 3.18
211 212 3.326747 GAACTGTGCGTCTAAGGTTGAT 58.673 45.455 0.00 0.00 0.00 2.57
212 213 2.688507 ACTGTGCGTCTAAGGTTGATG 58.311 47.619 0.00 0.00 0.00 3.07
213 214 2.002586 CTGTGCGTCTAAGGTTGATGG 58.997 52.381 0.00 0.00 0.00 3.51
215 216 2.563620 TGTGCGTCTAAGGTTGATGGTA 59.436 45.455 0.00 0.00 0.00 3.25
216 217 3.007074 TGTGCGTCTAAGGTTGATGGTAA 59.993 43.478 0.00 0.00 0.00 2.85
217 218 3.370061 GTGCGTCTAAGGTTGATGGTAAC 59.630 47.826 0.00 0.00 0.00 2.50
228 229 4.243550 TGGTAACAGGAGGTGGGG 57.756 61.111 0.00 0.00 46.17 4.96
229 230 1.540367 TGGTAACAGGAGGTGGGGG 60.540 63.158 0.00 0.00 46.17 5.40
230 231 1.229723 GGTAACAGGAGGTGGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
231 232 1.559965 GGTAACAGGAGGTGGGGGAC 61.560 65.000 0.00 0.00 0.00 4.46
240 241 4.813346 GTGGGGGACACGATGTTT 57.187 55.556 0.00 0.00 40.85 2.83
242 243 1.445871 GTGGGGGACACGATGTTTAC 58.554 55.000 0.00 0.00 40.85 2.01
243 244 0.325602 TGGGGGACACGATGTTTACC 59.674 55.000 0.00 0.00 0.00 2.85
244 245 0.393402 GGGGGACACGATGTTTACCC 60.393 60.000 13.15 13.15 37.95 3.69
245 246 0.325602 GGGGACACGATGTTTACCCA 59.674 55.000 0.00 0.00 38.30 4.51
246 247 1.677820 GGGGACACGATGTTTACCCAG 60.678 57.143 0.00 0.00 38.30 4.45
248 249 1.002773 GGACACGATGTTTACCCAGGT 59.997 52.381 0.00 0.00 0.00 4.00
252 253 1.338389 ACGATGTTTACCCAGGTTCGG 60.338 52.381 11.39 0.00 30.52 4.30
260 261 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
262 263 1.381327 CAGGTTCGGGCCCTCTCTA 60.381 63.158 22.43 0.00 0.00 2.43
264 265 0.760945 AGGTTCGGGCCCTCTCTATG 60.761 60.000 22.43 1.43 0.00 2.23
265 266 1.749033 GTTCGGGCCCTCTCTATGG 59.251 63.158 22.43 0.54 0.00 2.74
266 267 0.759436 GTTCGGGCCCTCTCTATGGA 60.759 60.000 22.43 3.53 0.00 3.41
267 268 0.470080 TTCGGGCCCTCTCTATGGAG 60.470 60.000 22.43 0.00 40.73 3.86
278 279 6.404426 CCTCTCTATGGAGGTAATACCCTA 57.596 45.833 5.71 0.00 45.65 3.53
279 280 6.189133 CCTCTCTATGGAGGTAATACCCTAC 58.811 48.000 5.71 0.00 45.65 3.18
280 281 6.011451 CCTCTCTATGGAGGTAATACCCTACT 60.011 46.154 5.71 0.00 45.65 2.57
282 283 7.468496 TCTCTATGGAGGTAATACCCTACTTC 58.532 42.308 5.71 0.00 39.75 3.01
283 284 6.559429 TCTATGGAGGTAATACCCTACTTCC 58.441 44.000 5.71 6.77 44.47 3.46
284 285 4.913154 TGGAGGTAATACCCTACTTCCT 57.087 45.455 13.63 0.00 44.50 3.36
287 288 4.224762 GAGGTAATACCCTACTTCCTGCT 58.775 47.826 5.71 0.00 39.75 4.24
288 289 4.632292 AGGTAATACCCTACTTCCTGCTT 58.368 43.478 5.71 0.00 39.75 3.91
289 290 4.409247 AGGTAATACCCTACTTCCTGCTTG 59.591 45.833 5.71 0.00 39.75 4.01
290 291 4.407945 GGTAATACCCTACTTCCTGCTTGA 59.592 45.833 0.00 0.00 30.04 3.02
291 292 5.071923 GGTAATACCCTACTTCCTGCTTGAT 59.928 44.000 0.00 0.00 30.04 2.57
292 293 5.717119 AATACCCTACTTCCTGCTTGATT 57.283 39.130 0.00 0.00 0.00 2.57
293 294 3.356529 ACCCTACTTCCTGCTTGATTG 57.643 47.619 0.00 0.00 0.00 2.67
294 295 2.912956 ACCCTACTTCCTGCTTGATTGA 59.087 45.455 0.00 0.00 0.00 2.57
297 298 4.141528 CCCTACTTCCTGCTTGATTGATCT 60.142 45.833 0.00 0.00 0.00 2.75
299 300 5.296283 CCTACTTCCTGCTTGATTGATCTTG 59.704 44.000 0.00 0.00 0.00 3.02
300 301 4.914983 ACTTCCTGCTTGATTGATCTTGA 58.085 39.130 0.00 0.00 0.00 3.02
301 302 5.507637 ACTTCCTGCTTGATTGATCTTGAT 58.492 37.500 0.00 0.00 0.00 2.57
302 303 5.357314 ACTTCCTGCTTGATTGATCTTGATG 59.643 40.000 0.00 0.00 0.00 3.07
303 304 5.106876 TCCTGCTTGATTGATCTTGATGA 57.893 39.130 0.00 0.00 0.00 2.92
304 305 5.503002 TCCTGCTTGATTGATCTTGATGAA 58.497 37.500 0.00 0.00 0.00 2.57
306 307 7.284820 TCCTGCTTGATTGATCTTGATGAATA 58.715 34.615 0.00 0.00 0.00 1.75
308 309 8.023706 CCTGCTTGATTGATCTTGATGAATATG 58.976 37.037 0.00 0.00 0.00 1.78
309 310 8.685838 TGCTTGATTGATCTTGATGAATATGA 57.314 30.769 0.00 0.00 0.00 2.15
332 333 8.589701 TGAGTATTACAAGAGTTGATCTACCA 57.410 34.615 3.54 0.00 37.23 3.25
336 337 9.088512 GTATTACAAGAGTTGATCTACCACAAG 57.911 37.037 3.54 0.00 37.23 3.16
337 338 5.808366 ACAAGAGTTGATCTACCACAAGA 57.192 39.130 3.54 0.00 37.23 3.02
347 348 4.054780 TCTACCACAAGATCGTAATGGC 57.945 45.455 10.01 0.00 33.46 4.40
348 349 3.704566 TCTACCACAAGATCGTAATGGCT 59.295 43.478 10.01 2.86 33.46 4.75
349 350 4.891168 TCTACCACAAGATCGTAATGGCTA 59.109 41.667 10.01 3.62 33.46 3.93
350 351 4.481368 ACCACAAGATCGTAATGGCTAA 57.519 40.909 10.01 0.00 33.46 3.09
351 352 4.839121 ACCACAAGATCGTAATGGCTAAA 58.161 39.130 10.01 0.00 33.46 1.85
353 354 5.123344 ACCACAAGATCGTAATGGCTAAAAC 59.877 40.000 10.01 0.00 33.46 2.43
355 356 4.638865 ACAAGATCGTAATGGCTAAAACCC 59.361 41.667 0.00 0.00 0.00 4.11
356 357 4.772886 AGATCGTAATGGCTAAAACCCT 57.227 40.909 0.00 0.00 0.00 4.34
357 358 5.881923 AGATCGTAATGGCTAAAACCCTA 57.118 39.130 0.00 0.00 0.00 3.53
359 360 5.365895 AGATCGTAATGGCTAAAACCCTAGT 59.634 40.000 0.00 0.00 0.00 2.57
360 361 6.552350 AGATCGTAATGGCTAAAACCCTAGTA 59.448 38.462 0.00 0.00 0.00 1.82
361 362 6.152932 TCGTAATGGCTAAAACCCTAGTAG 57.847 41.667 0.00 0.00 0.00 2.57
363 364 5.981915 CGTAATGGCTAAAACCCTAGTAGTC 59.018 44.000 0.00 0.00 0.00 2.59
364 365 6.183360 CGTAATGGCTAAAACCCTAGTAGTCT 60.183 42.308 0.00 0.00 0.00 3.24
367 368 4.648307 TGGCTAAAACCCTAGTAGTCTAGC 59.352 45.833 11.83 11.83 41.49 3.42
368 369 4.894705 GGCTAAAACCCTAGTAGTCTAGCT 59.105 45.833 16.04 0.00 41.49 3.32
369 370 5.363292 GGCTAAAACCCTAGTAGTCTAGCTT 59.637 44.000 16.04 0.00 41.49 3.74
372 373 7.067981 GCTAAAACCCTAGTAGTCTAGCTTGTA 59.932 40.741 0.00 0.00 41.49 2.41
373 374 7.974730 AAAACCCTAGTAGTCTAGCTTGTAT 57.025 36.000 0.00 0.00 41.49 2.29
374 375 6.963083 AACCCTAGTAGTCTAGCTTGTATG 57.037 41.667 0.00 0.00 41.49 2.39
375 376 6.263412 ACCCTAGTAGTCTAGCTTGTATGA 57.737 41.667 0.00 0.00 41.49 2.15
376 377 6.854578 ACCCTAGTAGTCTAGCTTGTATGAT 58.145 40.000 0.00 0.00 41.49 2.45
377 378 7.299134 ACCCTAGTAGTCTAGCTTGTATGATT 58.701 38.462 0.00 0.00 41.49 2.57
378 379 8.446394 ACCCTAGTAGTCTAGCTTGTATGATTA 58.554 37.037 0.00 0.00 41.49 1.75
387 388 9.364989 GTCTAGCTTGTATGATTATGATTCTCC 57.635 37.037 0.00 0.00 0.00 3.71
388 389 8.535335 TCTAGCTTGTATGATTATGATTCTCCC 58.465 37.037 0.00 0.00 0.00 4.30
389 390 7.327064 AGCTTGTATGATTATGATTCTCCCT 57.673 36.000 0.00 0.00 0.00 4.20
390 391 7.393216 AGCTTGTATGATTATGATTCTCCCTC 58.607 38.462 0.00 0.00 0.00 4.30
391 392 7.237263 AGCTTGTATGATTATGATTCTCCCTCT 59.763 37.037 0.00 0.00 0.00 3.69
393 394 9.868277 CTTGTATGATTATGATTCTCCCTCTAC 57.132 37.037 0.00 0.00 0.00 2.59
394 395 8.056407 TGTATGATTATGATTCTCCCTCTACG 57.944 38.462 0.00 0.00 0.00 3.51
395 396 5.984695 TGATTATGATTCTCCCTCTACGG 57.015 43.478 0.00 0.00 0.00 4.02
396 397 5.641155 TGATTATGATTCTCCCTCTACGGA 58.359 41.667 0.00 0.00 33.16 4.69
397 398 5.477291 TGATTATGATTCTCCCTCTACGGAC 59.523 44.000 0.00 0.00 33.16 4.79
398 399 3.603965 ATGATTCTCCCTCTACGGACT 57.396 47.619 0.00 0.00 33.16 3.85
399 400 4.726035 ATGATTCTCCCTCTACGGACTA 57.274 45.455 0.00 0.00 33.16 2.59
400 401 4.515028 TGATTCTCCCTCTACGGACTAA 57.485 45.455 0.00 0.00 33.16 2.24
402 403 4.643784 TGATTCTCCCTCTACGGACTAAAC 59.356 45.833 0.00 0.00 33.16 2.01
403 404 3.010200 TCTCCCTCTACGGACTAAACC 57.990 52.381 0.00 0.00 33.16 3.27
404 405 2.030371 CTCCCTCTACGGACTAAACCC 58.970 57.143 0.00 0.00 33.16 4.11
405 406 1.642762 TCCCTCTACGGACTAAACCCT 59.357 52.381 0.00 0.00 33.16 4.34
406 407 2.030371 CCCTCTACGGACTAAACCCTC 58.970 57.143 0.00 0.00 33.16 4.30
407 408 2.030371 CCTCTACGGACTAAACCCTCC 58.970 57.143 0.00 0.00 33.16 4.30
408 409 2.622452 CCTCTACGGACTAAACCCTCCA 60.622 54.545 0.00 0.00 33.16 3.86
409 410 3.094572 CTCTACGGACTAAACCCTCCAA 58.905 50.000 0.00 0.00 0.00 3.53
411 412 4.098894 TCTACGGACTAAACCCTCCAATT 58.901 43.478 0.00 0.00 0.00 2.32
412 413 3.801307 ACGGACTAAACCCTCCAATTT 57.199 42.857 0.00 0.00 0.00 1.82
414 415 4.582869 ACGGACTAAACCCTCCAATTTAC 58.417 43.478 0.00 0.00 0.00 2.01
415 416 4.041938 ACGGACTAAACCCTCCAATTTACA 59.958 41.667 0.00 0.00 0.00 2.41
416 417 5.190677 CGGACTAAACCCTCCAATTTACAT 58.809 41.667 0.00 0.00 0.00 2.29
417 418 6.070078 ACGGACTAAACCCTCCAATTTACATA 60.070 38.462 0.00 0.00 0.00 2.29
419 420 7.571025 GGACTAAACCCTCCAATTTACATAGA 58.429 38.462 0.00 0.00 0.00 1.98
421 422 7.924541 ACTAAACCCTCCAATTTACATAGACA 58.075 34.615 0.00 0.00 0.00 3.41
426 427 4.141801 CCTCCAATTTACATAGACACCGGA 60.142 45.833 9.46 0.00 0.00 5.14
441 442 1.305887 CGGAGGGGACTAGGGTTGT 60.306 63.158 0.00 0.00 44.43 3.32
442 443 0.032813 CGGAGGGGACTAGGGTTGTA 60.033 60.000 0.00 0.00 44.43 2.41
443 444 1.493861 GGAGGGGACTAGGGTTGTAC 58.506 60.000 0.00 0.00 44.43 2.90
444 445 1.273438 GGAGGGGACTAGGGTTGTACA 60.273 57.143 0.00 0.00 44.43 2.90
445 446 2.108970 GAGGGGACTAGGGTTGTACAG 58.891 57.143 0.00 0.00 44.43 2.74
446 447 1.720533 AGGGGACTAGGGTTGTACAGA 59.279 52.381 0.00 0.00 40.61 3.41
447 448 2.108970 GGGGACTAGGGTTGTACAGAG 58.891 57.143 0.00 0.00 0.00 3.35
452 453 2.224967 ACTAGGGTTGTACAGAGTCGGT 60.225 50.000 0.54 0.54 0.00 4.69
453 454 1.713297 AGGGTTGTACAGAGTCGGTT 58.287 50.000 0.00 0.00 0.00 4.44
454 455 2.880443 AGGGTTGTACAGAGTCGGTTA 58.120 47.619 0.00 0.00 0.00 2.85
456 457 2.297033 GGGTTGTACAGAGTCGGTTACA 59.703 50.000 0.00 1.96 0.00 2.41
457 458 3.311966 GGTTGTACAGAGTCGGTTACAC 58.688 50.000 0.00 0.00 0.00 2.90
459 460 3.909776 TGTACAGAGTCGGTTACACAG 57.090 47.619 0.00 0.00 0.00 3.66
461 462 3.884693 TGTACAGAGTCGGTTACACAGAA 59.115 43.478 0.00 0.00 0.00 3.02
462 463 4.338964 TGTACAGAGTCGGTTACACAGAAA 59.661 41.667 0.00 0.00 0.00 2.52
463 464 3.978687 ACAGAGTCGGTTACACAGAAAG 58.021 45.455 0.00 0.00 0.00 2.62
464 465 3.243771 ACAGAGTCGGTTACACAGAAAGG 60.244 47.826 0.00 0.00 0.00 3.11
465 466 3.005472 CAGAGTCGGTTACACAGAAAGGA 59.995 47.826 0.00 0.00 0.00 3.36
466 467 3.640029 AGAGTCGGTTACACAGAAAGGAA 59.360 43.478 0.00 0.00 0.00 3.36
468 469 4.566987 AGTCGGTTACACAGAAAGGAATC 58.433 43.478 0.00 0.00 0.00 2.52
469 470 4.283722 AGTCGGTTACACAGAAAGGAATCT 59.716 41.667 0.00 0.00 0.00 2.40
470 471 4.995487 GTCGGTTACACAGAAAGGAATCTT 59.005 41.667 0.00 0.00 34.07 2.40
471 472 5.120363 GTCGGTTACACAGAAAGGAATCTTC 59.880 44.000 0.00 0.00 31.82 2.87
472 473 4.994852 CGGTTACACAGAAAGGAATCTTCA 59.005 41.667 0.00 0.00 31.82 3.02
473 474 5.643777 CGGTTACACAGAAAGGAATCTTCAT 59.356 40.000 0.00 0.00 31.82 2.57
474 475 6.149474 CGGTTACACAGAAAGGAATCTTCATT 59.851 38.462 0.00 0.00 31.81 2.57
475 476 7.333423 CGGTTACACAGAAAGGAATCTTCATTA 59.667 37.037 0.00 0.00 30.13 1.90
480 481 9.829507 ACACAGAAAGGAATCTTCATTATCTAG 57.170 33.333 0.00 0.00 30.13 2.43
488 489 8.456124 AGGAATCTTCATTATCTAGAGAGGACT 58.544 37.037 0.00 0.00 0.00 3.85
489 490 9.747898 GGAATCTTCATTATCTAGAGAGGACTA 57.252 37.037 0.00 0.00 0.00 2.59
492 493 9.739276 ATCTTCATTATCTAGAGAGGACTAGTG 57.261 37.037 0.00 0.00 40.26 2.74
493 494 8.939932 TCTTCATTATCTAGAGAGGACTAGTGA 58.060 37.037 0.00 0.00 40.26 3.41
494 495 8.911918 TTCATTATCTAGAGAGGACTAGTGAC 57.088 38.462 0.00 0.00 40.26 3.67
495 496 8.035448 TCATTATCTAGAGAGGACTAGTGACA 57.965 38.462 0.00 0.00 40.26 3.58
496 497 8.664992 TCATTATCTAGAGAGGACTAGTGACAT 58.335 37.037 0.00 0.00 40.26 3.06
503 504 0.530744 GGACTAGTGACATCGGCACA 59.469 55.000 0.00 0.00 38.70 4.57
505 506 2.418746 GGACTAGTGACATCGGCACATT 60.419 50.000 0.00 0.00 38.70 2.71
523 524 2.542020 TTGACGGCTCATTCTGACAA 57.458 45.000 0.00 0.00 0.00 3.18
546 549 2.095059 GGCAATGCTCGTTCAGTGATTT 60.095 45.455 4.82 0.00 34.31 2.17
560 563 1.859080 GTGATTTATGGACCTCGACGC 59.141 52.381 0.00 0.00 0.00 5.19
670 3222 0.457853 GCCACGCGTGAAGAGATGTA 60.458 55.000 39.10 0.00 0.00 2.29
681 3233 3.451178 TGAAGAGATGTACAAGGTAGGGC 59.549 47.826 0.00 0.00 0.00 5.19
705 3257 0.455410 TCACAAAAAGCAAGCGCACT 59.545 45.000 11.47 0.00 42.27 4.40
732 3284 4.752101 AGAGAGAAAATGACAACAAGGTCG 59.248 41.667 0.00 0.00 40.72 4.79
744 3296 0.739813 CAAGGTCGCTAGGGTTTCCG 60.740 60.000 6.70 0.00 38.33 4.30
840 3392 3.745797 GCTGGGTCAACTCTTTGAGTCTT 60.746 47.826 0.42 0.00 42.59 3.01
867 3419 4.937620 TCTCTCAGATCCACCAAAAATTCG 59.062 41.667 0.00 0.00 0.00 3.34
931 3506 9.110502 GAAAAGAGAGGACGTGGAAATAATATT 57.889 33.333 0.00 0.00 0.00 1.28
937 3512 8.432805 AGAGGACGTGGAAATAATATTGAGATT 58.567 33.333 0.00 0.00 0.00 2.40
1010 3615 0.676782 ACCGTAACAATGGCAGCTCC 60.677 55.000 0.00 0.00 0.00 4.70
1018 3623 2.012673 CAATGGCAGCTCCTACTTCAC 58.987 52.381 0.00 0.00 35.26 3.18
1035 3643 6.142259 ACTTCACTTCTTCTACTCCTCCTA 57.858 41.667 0.00 0.00 0.00 2.94
1359 3967 4.123545 AAGCCCGGGCCCACATAC 62.124 66.667 41.72 12.58 43.17 2.39
1396 4004 1.596895 GAACCGCTCCGACTCCTTCT 61.597 60.000 0.00 0.00 0.00 2.85
1461 4069 4.724501 TACAAATGCGCCGGCCCA 62.725 61.111 23.46 20.47 38.85 5.36
1585 4193 1.301716 GAGCGGAACCTCAACAGCA 60.302 57.895 0.00 0.00 0.00 4.41
1832 4464 4.521062 CGGCGAGCTCCTCAAGGG 62.521 72.222 8.47 0.00 35.41 3.95
1861 4505 1.682684 GAGACCTTCTCCGGCTCCA 60.683 63.158 0.00 0.00 37.55 3.86
1863 4507 1.985116 GACCTTCTCCGGCTCCAGT 60.985 63.158 0.00 0.00 0.00 4.00
1932 4576 1.876416 GCGTACAAGGTTCTGAGGCAA 60.876 52.381 0.00 0.00 0.00 4.52
1945 4589 0.884514 GAGGCAAAAGCTCTTGACCC 59.115 55.000 0.77 0.00 34.60 4.46
2123 4769 2.752322 TTCAACGTCGCCGGTAGTGG 62.752 60.000 1.90 0.00 38.78 4.00
2220 4872 0.448990 CCTACGACATCCACGACGAA 59.551 55.000 0.00 0.00 34.70 3.85
2347 5005 2.101750 GCCACTCTTCTACTTCTAGGGC 59.898 54.545 0.00 0.00 0.00 5.19
2355 5013 0.616679 TACTTCTAGGGCGGGTGCTT 60.617 55.000 0.00 0.00 42.25 3.91
2384 5042 1.208052 GTTCCAGCTAGCCAGATCACA 59.792 52.381 12.13 0.00 0.00 3.58
2476 5138 7.333174 CCAATGTACGTGCATCATTATGGTATA 59.667 37.037 19.70 0.00 33.38 1.47
2477 5139 8.882736 CAATGTACGTGCATCATTATGGTATAT 58.117 33.333 19.70 0.00 33.38 0.86
2478 5140 8.648557 ATGTACGTGCATCATTATGGTATATC 57.351 34.615 13.79 0.00 33.38 1.63
2479 5141 7.607250 TGTACGTGCATCATTATGGTATATCA 58.393 34.615 0.82 0.00 33.38 2.15
2481 5143 6.108687 ACGTGCATCATTATGGTATATCAGG 58.891 40.000 0.00 0.00 33.38 3.86
2482 5144 5.525012 CGTGCATCATTATGGTATATCAGGG 59.475 44.000 0.00 0.00 33.38 4.45
2484 5146 7.285566 GTGCATCATTATGGTATATCAGGGAT 58.714 38.462 0.00 0.00 33.38 3.85
2485 5147 8.432013 GTGCATCATTATGGTATATCAGGGATA 58.568 37.037 0.00 0.00 33.38 2.59
2488 5150 9.993454 CATCATTATGGTATATCAGGGATAGTG 57.007 37.037 0.00 0.00 0.00 2.74
2494 5156 8.917414 ATGGTATATCAGGGATAGTGTTATGT 57.083 34.615 0.00 0.00 0.00 2.29
2496 5158 9.251440 TGGTATATCAGGGATAGTGTTATGTAC 57.749 37.037 0.00 0.00 0.00 2.90
2508 5191 2.954318 TGTTATGTACTACTCCCTCCGC 59.046 50.000 0.00 0.00 0.00 5.54
2511 5194 0.917533 TGTACTACTCCCTCCGCTCT 59.082 55.000 0.00 0.00 0.00 4.09
2512 5195 2.121948 TGTACTACTCCCTCCGCTCTA 58.878 52.381 0.00 0.00 0.00 2.43
2518 5201 4.828387 ACTACTCCCTCCGCTCTAAAATAG 59.172 45.833 0.00 0.00 0.00 1.73
2519 5202 3.912248 ACTCCCTCCGCTCTAAAATAGA 58.088 45.455 0.00 0.00 0.00 1.98
2522 5205 4.480115 TCCCTCCGCTCTAAAATAGATGA 58.520 43.478 0.00 0.00 33.66 2.92
2524 5207 4.039245 CCCTCCGCTCTAAAATAGATGACA 59.961 45.833 0.00 0.00 33.66 3.58
2525 5208 4.985409 CCTCCGCTCTAAAATAGATGACAC 59.015 45.833 0.00 0.00 33.66 3.67
2526 5209 5.451937 CCTCCGCTCTAAAATAGATGACACA 60.452 44.000 0.00 0.00 33.66 3.72
2527 5210 5.972935 TCCGCTCTAAAATAGATGACACAA 58.027 37.500 0.00 0.00 33.66 3.33
2528 5211 5.810587 TCCGCTCTAAAATAGATGACACAAC 59.189 40.000 0.00 0.00 33.66 3.32
2529 5212 5.812642 CCGCTCTAAAATAGATGACACAACT 59.187 40.000 0.00 0.00 33.66 3.16
2530 5213 6.313905 CCGCTCTAAAATAGATGACACAACTT 59.686 38.462 0.00 0.00 33.66 2.66
2531 5214 7.394872 CGCTCTAAAATAGATGACACAACTTC 58.605 38.462 0.00 0.00 33.66 3.01
2533 5216 7.063544 GCTCTAAAATAGATGACACAACTTCGT 59.936 37.037 0.00 0.00 33.66 3.85
2534 5217 9.569167 CTCTAAAATAGATGACACAACTTCGTA 57.431 33.333 0.00 0.00 33.66 3.43
2535 5218 9.569167 TCTAAAATAGATGACACAACTTCGTAG 57.431 33.333 0.00 0.00 0.00 3.51
2538 5221 8.684973 AAATAGATGACACAACTTCGTAGTAC 57.315 34.615 0.00 0.00 33.17 2.73
2539 5222 5.961396 AGATGACACAACTTCGTAGTACT 57.039 39.130 0.00 0.00 33.17 2.73
2540 5223 8.728337 ATAGATGACACAACTTCGTAGTACTA 57.272 34.615 0.00 0.00 33.17 1.82
2542 5225 7.303998 AGATGACACAACTTCGTAGTACTAAC 58.696 38.462 3.61 0.00 33.17 2.34
2543 5226 6.624352 TGACACAACTTCGTAGTACTAACT 57.376 37.500 3.61 0.00 39.91 2.24
2545 5228 7.483307 TGACACAACTTCGTAGTACTAACTTT 58.517 34.615 3.61 0.00 37.15 2.66
2547 5230 9.111702 GACACAACTTCGTAGTACTAACTTTAG 57.888 37.037 3.61 1.34 37.15 1.85
2563 5321 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
2564 5322 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
2570 5328 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2577 5335 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2580 5338 4.383770 GGGTCATCTATTTTGGAACGGAGA 60.384 45.833 0.00 0.00 0.00 3.71
2582 5340 4.811557 GTCATCTATTTTGGAACGGAGAGG 59.188 45.833 0.00 0.00 0.00 3.69
2583 5341 4.714802 TCATCTATTTTGGAACGGAGAGGA 59.285 41.667 0.00 0.00 0.00 3.71
2586 5344 6.801718 TCTATTTTGGAACGGAGAGGATAA 57.198 37.500 0.00 0.00 0.00 1.75
2587 5345 7.190335 TCTATTTTGGAACGGAGAGGATAAA 57.810 36.000 0.00 0.00 0.00 1.40
2628 5394 5.353678 GCAAGATTCTTATGTCAGAAGCTGT 59.646 40.000 2.16 0.00 46.50 4.40
2665 5431 4.121317 TGTCCGTCTTTCATTGTTAACGT 58.879 39.130 0.26 0.00 0.00 3.99
2667 5433 5.403166 TGTCCGTCTTTCATTGTTAACGTAG 59.597 40.000 0.26 0.00 0.00 3.51
2669 5435 6.582295 GTCCGTCTTTCATTGTTAACGTAGTA 59.418 38.462 0.26 0.00 45.00 1.82
2670 5436 7.114811 GTCCGTCTTTCATTGTTAACGTAGTAA 59.885 37.037 0.26 0.00 45.00 2.24
2671 5437 7.326789 TCCGTCTTTCATTGTTAACGTAGTAAG 59.673 37.037 0.26 2.74 45.00 2.34
2674 5440 6.875195 TCTTTCATTGTTAACGTAGTAAGGGG 59.125 38.462 0.26 0.00 45.00 4.79
2675 5441 5.088680 TCATTGTTAACGTAGTAAGGGGG 57.911 43.478 0.26 0.00 45.00 5.40
2676 5442 4.776837 TCATTGTTAACGTAGTAAGGGGGA 59.223 41.667 0.26 0.00 45.00 4.81
2677 5443 5.426185 TCATTGTTAACGTAGTAAGGGGGAT 59.574 40.000 0.26 0.00 45.00 3.85
2750 5650 4.360405 ATCCCAACCACCGCCACC 62.360 66.667 0.00 0.00 0.00 4.61
2842 5777 2.969628 ATCCACTCGTCAACATCCTC 57.030 50.000 0.00 0.00 0.00 3.71
2850 5785 4.223032 ACTCGTCAACATCCTCAACCTTAT 59.777 41.667 0.00 0.00 0.00 1.73
2851 5786 4.503910 TCGTCAACATCCTCAACCTTATG 58.496 43.478 0.00 0.00 0.00 1.90
2855 5790 3.350219 ACATCCTCAACCTTATGCGTT 57.650 42.857 0.00 0.00 0.00 4.84
2859 5794 2.565391 TCCTCAACCTTATGCGTTCTCA 59.435 45.455 0.00 0.00 0.00 3.27
2871 5806 4.775440 TGCGTTCTCAAGCAAAAATTTG 57.225 36.364 1.52 1.52 40.78 2.32
2872 5807 4.428209 TGCGTTCTCAAGCAAAAATTTGA 58.572 34.783 9.96 0.00 40.78 2.69
2873 5808 5.049167 TGCGTTCTCAAGCAAAAATTTGAT 58.951 33.333 9.96 0.08 40.78 2.57
2874 5809 6.212235 TGCGTTCTCAAGCAAAAATTTGATA 58.788 32.000 9.96 0.00 40.78 2.15
2897 5832 6.775594 AAAACCAAAGTTATCCATCTAGCC 57.224 37.500 0.00 0.00 34.19 3.93
2908 5843 7.238514 AGTTATCCATCTAGCCCATCAATAACT 59.761 37.037 0.00 0.00 34.34 2.24
2952 5887 5.293079 CCTTGTCTTCTCTGCAAGCTATAAC 59.707 44.000 0.00 0.00 38.50 1.89
3098 6062 8.008902 TGTTTTTCCGTTTAAACAAACTTGAG 57.991 30.769 22.33 6.24 40.26 3.02
3107 6071 7.148885 CGTTTAAACAAACTTGAGCACAAAGAA 60.149 33.333 18.07 0.00 35.49 2.52
3176 6140 3.733337 GTTCTCAAGTCAAGGCTCTCAA 58.267 45.455 0.00 0.00 0.00 3.02
3215 6179 3.388024 TGGTGCATCCAGAATAGGTACTC 59.612 47.826 0.00 0.00 41.93 2.59
3216 6180 3.244249 GGTGCATCCAGAATAGGTACTCC 60.244 52.174 0.00 0.00 36.49 3.85
3217 6181 2.972713 TGCATCCAGAATAGGTACTCCC 59.027 50.000 0.00 0.00 41.75 4.30
3219 6183 3.259625 GCATCCAGAATAGGTACTCCCTC 59.740 52.174 0.00 0.00 44.81 4.30
3220 6184 3.614568 TCCAGAATAGGTACTCCCTCC 57.385 52.381 0.00 0.00 44.81 4.30
3221 6185 2.863238 TCCAGAATAGGTACTCCCTCCA 59.137 50.000 0.00 0.00 44.81 3.86
3222 6186 3.471306 TCCAGAATAGGTACTCCCTCCAT 59.529 47.826 0.00 0.00 44.81 3.41
3223 6187 4.077982 TCCAGAATAGGTACTCCCTCCATT 60.078 45.833 0.00 0.00 44.81 3.16
3224 6188 4.660771 CCAGAATAGGTACTCCCTCCATTT 59.339 45.833 0.00 0.00 44.81 2.32
3225 6189 5.132816 CCAGAATAGGTACTCCCTCCATTTT 59.867 44.000 0.00 0.00 44.81 1.82
3226 6190 6.329197 CCAGAATAGGTACTCCCTCCATTTTA 59.671 42.308 0.00 0.00 44.81 1.52
3227 6191 7.147373 CCAGAATAGGTACTCCCTCCATTTTAA 60.147 40.741 0.00 0.00 44.81 1.52
3228 6192 8.440771 CAGAATAGGTACTCCCTCCATTTTAAT 58.559 37.037 0.00 0.00 44.81 1.40
3229 6193 9.015146 AGAATAGGTACTCCCTCCATTTTAATT 57.985 33.333 0.00 0.00 44.81 1.40
3230 6194 9.642343 GAATAGGTACTCCCTCCATTTTAATTT 57.358 33.333 0.00 0.00 44.81 1.82
3233 6197 8.171337 AGGTACTCCCTCCATTTTAATTTAGT 57.829 34.615 0.00 0.00 40.71 2.24
3234 6198 8.621073 AGGTACTCCCTCCATTTTAATTTAGTT 58.379 33.333 0.00 0.00 40.71 2.24
3235 6199 8.900781 GGTACTCCCTCCATTTTAATTTAGTTC 58.099 37.037 0.00 0.00 0.00 3.01
3236 6200 7.956328 ACTCCCTCCATTTTAATTTAGTTCC 57.044 36.000 0.00 0.00 0.00 3.62
3237 6201 6.895756 ACTCCCTCCATTTTAATTTAGTTCCC 59.104 38.462 0.00 0.00 0.00 3.97
3238 6202 5.889289 TCCCTCCATTTTAATTTAGTTCCCG 59.111 40.000 0.00 0.00 0.00 5.14
3239 6203 5.655090 CCCTCCATTTTAATTTAGTTCCCGT 59.345 40.000 0.00 0.00 0.00 5.28
3240 6204 6.829811 CCCTCCATTTTAATTTAGTTCCCGTA 59.170 38.462 0.00 0.00 0.00 4.02
3241 6205 7.504574 CCCTCCATTTTAATTTAGTTCCCGTAT 59.495 37.037 0.00 0.00 0.00 3.06
3242 6206 8.909923 CCTCCATTTTAATTTAGTTCCCGTATT 58.090 33.333 0.00 0.00 0.00 1.89
3251 6215 8.640063 AATTTAGTTCCCGTATTAGTTTTGGT 57.360 30.769 0.00 0.00 0.00 3.67
3252 6216 7.671495 TTTAGTTCCCGTATTAGTTTTGGTC 57.329 36.000 0.00 0.00 0.00 4.02
3253 6217 5.231702 AGTTCCCGTATTAGTTTTGGTCA 57.768 39.130 0.00 0.00 0.00 4.02
3254 6218 5.623169 AGTTCCCGTATTAGTTTTGGTCAA 58.377 37.500 0.00 0.00 0.00 3.18
3255 6219 6.063404 AGTTCCCGTATTAGTTTTGGTCAAA 58.937 36.000 0.00 0.00 0.00 2.69
3256 6220 6.206048 AGTTCCCGTATTAGTTTTGGTCAAAG 59.794 38.462 0.00 0.00 0.00 2.77
3257 6221 5.623169 TCCCGTATTAGTTTTGGTCAAAGT 58.377 37.500 0.00 0.00 32.41 2.66
3258 6222 5.702209 TCCCGTATTAGTTTTGGTCAAAGTC 59.298 40.000 0.00 0.00 30.16 3.01
3259 6223 5.470777 CCCGTATTAGTTTTGGTCAAAGTCA 59.529 40.000 0.00 0.00 30.16 3.41
3260 6224 6.016943 CCCGTATTAGTTTTGGTCAAAGTCAA 60.017 38.462 0.00 0.00 30.16 3.18
3261 6225 7.075741 CCGTATTAGTTTTGGTCAAAGTCAAG 58.924 38.462 0.00 0.00 30.16 3.02
3262 6226 7.255001 CCGTATTAGTTTTGGTCAAAGTCAAGT 60.255 37.037 0.00 0.00 30.16 3.16
3263 6227 7.586300 CGTATTAGTTTTGGTCAAAGTCAAGTG 59.414 37.037 0.00 0.00 30.16 3.16
3264 6228 6.827586 TTAGTTTTGGTCAAAGTCAAGTGT 57.172 33.333 0.00 0.00 30.16 3.55
3265 6229 5.722021 AGTTTTGGTCAAAGTCAAGTGTT 57.278 34.783 0.00 0.00 0.00 3.32
3266 6230 5.469479 AGTTTTGGTCAAAGTCAAGTGTTG 58.531 37.500 0.00 0.00 0.00 3.33
3267 6231 5.010617 AGTTTTGGTCAAAGTCAAGTGTTGT 59.989 36.000 0.00 0.00 0.00 3.32
3268 6232 6.207810 AGTTTTGGTCAAAGTCAAGTGTTGTA 59.792 34.615 0.00 0.00 0.00 2.41
3269 6233 6.576662 TTTGGTCAAAGTCAAGTGTTGTAA 57.423 33.333 0.00 0.00 0.00 2.41
3270 6234 6.576662 TTGGTCAAAGTCAAGTGTTGTAAA 57.423 33.333 0.00 0.00 0.00 2.01
3271 6235 6.576662 TGGTCAAAGTCAAGTGTTGTAAAA 57.423 33.333 0.00 0.00 0.00 1.52
3272 6236 7.164230 TGGTCAAAGTCAAGTGTTGTAAAAT 57.836 32.000 0.00 0.00 0.00 1.82
3273 6237 7.607250 TGGTCAAAGTCAAGTGTTGTAAAATT 58.393 30.769 0.00 0.00 0.00 1.82
3274 6238 8.091449 TGGTCAAAGTCAAGTGTTGTAAAATTT 58.909 29.630 0.00 0.00 0.00 1.82
3275 6239 8.379902 GGTCAAAGTCAAGTGTTGTAAAATTTG 58.620 33.333 0.00 0.00 0.00 2.32
3276 6240 9.134734 GTCAAAGTCAAGTGTTGTAAAATTTGA 57.865 29.630 0.00 0.00 32.32 2.69
3277 6241 9.134734 TCAAAGTCAAGTGTTGTAAAATTTGAC 57.865 29.630 12.61 12.61 40.22 3.18
3278 6242 8.920665 CAAAGTCAAGTGTTGTAAAATTTGACA 58.079 29.630 19.09 4.09 41.31 3.58
3279 6243 9.482627 AAAGTCAAGTGTTGTAAAATTTGACAA 57.517 25.926 15.90 15.90 41.31 3.18
3280 6244 9.482627 AAGTCAAGTGTTGTAAAATTTGACAAA 57.517 25.926 20.50 9.96 41.31 2.83
3281 6245 9.482627 AGTCAAGTGTTGTAAAATTTGACAAAA 57.517 25.926 20.50 14.04 41.31 2.44
3346 6310 9.139734 ACCATTAGATTCAATATCAAATGTGCT 57.860 29.630 0.00 0.00 0.00 4.40
3347 6311 9.976511 CCATTAGATTCAATATCAAATGTGCTT 57.023 29.630 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.934496 TTTCATATTCGGCGGCTTCG 59.066 50.000 7.21 0.00 0.00 3.79
23 24 3.003689 CAGATTTTCATATTCGGCGGCTT 59.996 43.478 7.21 0.00 0.00 4.35
24 25 2.549754 CAGATTTTCATATTCGGCGGCT 59.450 45.455 7.21 0.00 0.00 5.52
25 26 2.290641 ACAGATTTTCATATTCGGCGGC 59.709 45.455 7.21 0.00 0.00 6.53
26 27 3.058914 GGACAGATTTTCATATTCGGCGG 60.059 47.826 7.21 0.00 0.00 6.13
29 30 3.498397 CCCGGACAGATTTTCATATTCGG 59.502 47.826 0.73 0.00 0.00 4.30
32 33 4.446311 CCTCCCCGGACAGATTTTCATATT 60.446 45.833 0.73 0.00 33.16 1.28
33 34 3.073062 CCTCCCCGGACAGATTTTCATAT 59.927 47.826 0.73 0.00 33.16 1.78
34 35 2.438021 CCTCCCCGGACAGATTTTCATA 59.562 50.000 0.73 0.00 33.16 2.15
35 36 1.212935 CCTCCCCGGACAGATTTTCAT 59.787 52.381 0.73 0.00 33.16 2.57
36 37 0.618458 CCTCCCCGGACAGATTTTCA 59.382 55.000 0.73 0.00 33.16 2.69
37 38 0.909623 TCCTCCCCGGACAGATTTTC 59.090 55.000 0.73 0.00 36.69 2.29
38 39 1.368374 TTCCTCCCCGGACAGATTTT 58.632 50.000 0.73 0.00 42.97 1.82
40 41 1.004394 GTTTTCCTCCCCGGACAGATT 59.996 52.381 0.73 0.00 42.97 2.40
41 42 0.618981 GTTTTCCTCCCCGGACAGAT 59.381 55.000 0.73 0.00 42.97 2.90
42 43 1.486145 GGTTTTCCTCCCCGGACAGA 61.486 60.000 0.73 0.00 42.97 3.41
44 45 3.163503 GGTTTTCCTCCCCGGACA 58.836 61.111 0.73 0.00 42.97 4.02
56 57 1.064017 TGCAGTCCAAGGTGAGGTTTT 60.064 47.619 0.00 0.00 0.00 2.43
57 58 0.550914 TGCAGTCCAAGGTGAGGTTT 59.449 50.000 0.00 0.00 0.00 3.27
58 59 0.773644 ATGCAGTCCAAGGTGAGGTT 59.226 50.000 0.00 0.00 0.00 3.50
60 61 1.171308 CAATGCAGTCCAAGGTGAGG 58.829 55.000 0.00 0.00 0.00 3.86
64 65 1.682854 CACAACAATGCAGTCCAAGGT 59.317 47.619 0.00 0.00 0.00 3.50
65 66 1.000060 CCACAACAATGCAGTCCAAGG 60.000 52.381 0.00 0.00 0.00 3.61
66 67 1.955778 TCCACAACAATGCAGTCCAAG 59.044 47.619 0.00 0.00 0.00 3.61
67 68 2.064434 TCCACAACAATGCAGTCCAA 57.936 45.000 0.00 0.00 0.00 3.53
68 69 1.887854 CATCCACAACAATGCAGTCCA 59.112 47.619 0.00 0.00 0.00 4.02
70 71 4.082625 TCAATCATCCACAACAATGCAGTC 60.083 41.667 0.00 0.00 0.00 3.51
71 72 3.827876 TCAATCATCCACAACAATGCAGT 59.172 39.130 0.00 0.00 0.00 4.40
72 73 4.171005 GTCAATCATCCACAACAATGCAG 58.829 43.478 0.00 0.00 0.00 4.41
73 74 3.366171 CGTCAATCATCCACAACAATGCA 60.366 43.478 0.00 0.00 0.00 3.96
74 75 3.173599 CGTCAATCATCCACAACAATGC 58.826 45.455 0.00 0.00 0.00 3.56
75 76 3.439825 TCCGTCAATCATCCACAACAATG 59.560 43.478 0.00 0.00 0.00 2.82
76 77 3.684908 TCCGTCAATCATCCACAACAAT 58.315 40.909 0.00 0.00 0.00 2.71
77 78 3.073678 CTCCGTCAATCATCCACAACAA 58.926 45.455 0.00 0.00 0.00 2.83
79 80 1.398390 GCTCCGTCAATCATCCACAAC 59.602 52.381 0.00 0.00 0.00 3.32
80 81 1.678728 GGCTCCGTCAATCATCCACAA 60.679 52.381 0.00 0.00 0.00 3.33
82 83 0.107703 TGGCTCCGTCAATCATCCAC 60.108 55.000 0.00 0.00 0.00 4.02
83 84 0.839277 ATGGCTCCGTCAATCATCCA 59.161 50.000 0.00 0.00 0.00 3.41
84 85 1.202687 TGATGGCTCCGTCAATCATCC 60.203 52.381 8.29 0.00 38.81 3.51
85 86 2.245159 TGATGGCTCCGTCAATCATC 57.755 50.000 8.29 0.00 38.81 2.92
86 87 2.715749 TTGATGGCTCCGTCAATCAT 57.284 45.000 17.14 0.00 44.19 2.45
90 91 0.400213 AGGTTTGATGGCTCCGTCAA 59.600 50.000 17.14 17.14 46.42 3.18
91 92 0.400213 AAGGTTTGATGGCTCCGTCA 59.600 50.000 6.72 6.72 39.86 4.35
92 93 1.534729 AAAGGTTTGATGGCTCCGTC 58.465 50.000 1.20 1.20 0.00 4.79
94 95 1.067635 CCAAAAGGTTTGATGGCTCCG 60.068 52.381 2.30 0.00 0.00 4.63
95 96 1.970640 ACCAAAAGGTTTGATGGCTCC 59.029 47.619 2.30 0.00 36.37 4.70
96 97 2.627699 TCACCAAAAGGTTTGATGGCTC 59.372 45.455 2.30 0.00 36.37 4.70
97 98 2.365293 GTCACCAAAAGGTTTGATGGCT 59.635 45.455 2.30 0.00 36.37 4.75
98 99 2.754472 GTCACCAAAAGGTTTGATGGC 58.246 47.619 2.30 0.00 36.37 4.40
99 100 2.621055 TCGTCACCAAAAGGTTTGATGG 59.379 45.455 2.30 0.00 38.91 3.51
100 101 3.628017 GTCGTCACCAAAAGGTTTGATG 58.372 45.455 2.30 0.00 0.00 3.07
103 104 1.858399 GCGTCGTCACCAAAAGGTTTG 60.858 52.381 0.00 0.00 0.00 2.93
105 106 0.745128 TGCGTCGTCACCAAAAGGTT 60.745 50.000 0.00 0.00 0.00 3.50
106 107 1.153329 TGCGTCGTCACCAAAAGGT 60.153 52.632 0.00 0.00 0.00 3.50
107 108 1.157870 ACTGCGTCGTCACCAAAAGG 61.158 55.000 0.00 0.00 0.00 3.11
108 109 0.042188 CACTGCGTCGTCACCAAAAG 60.042 55.000 0.00 0.00 0.00 2.27
109 110 1.433053 CCACTGCGTCGTCACCAAAA 61.433 55.000 0.00 0.00 0.00 2.44
110 111 1.885388 CCACTGCGTCGTCACCAAA 60.885 57.895 0.00 0.00 0.00 3.28
111 112 2.279851 CCACTGCGTCGTCACCAA 60.280 61.111 0.00 0.00 0.00 3.67
113 114 2.028484 TTCCACTGCGTCGTCACC 59.972 61.111 0.00 0.00 0.00 4.02
114 115 1.276145 GAGTTCCACTGCGTCGTCAC 61.276 60.000 0.00 0.00 0.00 3.67
115 116 1.007734 GAGTTCCACTGCGTCGTCA 60.008 57.895 0.00 0.00 0.00 4.35
117 118 1.286260 GAGAGTTCCACTGCGTCGT 59.714 57.895 0.00 0.00 0.00 4.34
118 119 0.318699 TTGAGAGTTCCACTGCGTCG 60.319 55.000 0.00 0.00 0.00 5.12
119 120 1.728971 CATTGAGAGTTCCACTGCGTC 59.271 52.381 0.00 0.00 0.00 5.19
120 121 1.344438 TCATTGAGAGTTCCACTGCGT 59.656 47.619 0.00 0.00 0.00 5.24
121 122 2.084610 TCATTGAGAGTTCCACTGCG 57.915 50.000 0.00 0.00 0.00 5.18
122 123 3.365767 GCTTTCATTGAGAGTTCCACTGC 60.366 47.826 6.13 0.00 0.00 4.40
123 124 3.817084 TGCTTTCATTGAGAGTTCCACTG 59.183 43.478 6.13 0.00 0.00 3.66
126 127 3.149196 GGTGCTTTCATTGAGAGTTCCA 58.851 45.455 6.13 0.00 0.00 3.53
128 129 4.836125 TTGGTGCTTTCATTGAGAGTTC 57.164 40.909 6.13 0.69 0.00 3.01
131 132 4.670992 CGACATTGGTGCTTTCATTGAGAG 60.671 45.833 0.00 0.00 0.00 3.20
132 133 3.189080 CGACATTGGTGCTTTCATTGAGA 59.811 43.478 0.00 0.00 0.00 3.27
133 134 3.495193 CGACATTGGTGCTTTCATTGAG 58.505 45.455 0.00 0.00 0.00 3.02
134 135 2.228582 CCGACATTGGTGCTTTCATTGA 59.771 45.455 0.00 0.00 0.00 2.57
135 136 2.030007 ACCGACATTGGTGCTTTCATTG 60.030 45.455 0.00 0.00 41.85 2.82
136 137 2.238521 ACCGACATTGGTGCTTTCATT 58.761 42.857 0.00 0.00 41.85 2.57
137 138 1.909700 ACCGACATTGGTGCTTTCAT 58.090 45.000 0.00 0.00 41.85 2.57
138 139 3.412722 ACCGACATTGGTGCTTTCA 57.587 47.368 0.00 0.00 41.85 2.69
146 147 2.415697 GGTTTTGACACCGACATTGG 57.584 50.000 0.00 0.00 0.00 3.16
155 156 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
156 157 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
157 158 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
159 160 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
160 161 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
161 162 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
163 164 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
164 165 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
165 166 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
166 167 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
167 168 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
168 169 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
170 171 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
171 172 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
172 173 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
176 177 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
177 178 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
178 179 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
179 180 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
180 181 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
181 182 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
188 189 0.038526 ACCTTAGACGCACAGTTCGG 60.039 55.000 0.00 0.00 0.00 4.30
190 191 2.750948 TCAACCTTAGACGCACAGTTC 58.249 47.619 0.00 0.00 0.00 3.01
192 193 2.612972 CCATCAACCTTAGACGCACAGT 60.613 50.000 0.00 0.00 0.00 3.55
193 194 2.002586 CCATCAACCTTAGACGCACAG 58.997 52.381 0.00 0.00 0.00 3.66
194 195 1.346395 ACCATCAACCTTAGACGCACA 59.654 47.619 0.00 0.00 0.00 4.57
195 196 2.094762 ACCATCAACCTTAGACGCAC 57.905 50.000 0.00 0.00 0.00 5.34
196 197 3.007074 TGTTACCATCAACCTTAGACGCA 59.993 43.478 0.00 0.00 0.00 5.24
197 198 3.592059 TGTTACCATCAACCTTAGACGC 58.408 45.455 0.00 0.00 0.00 5.19
198 199 4.081862 TCCTGTTACCATCAACCTTAGACG 60.082 45.833 0.00 0.00 0.00 4.18
199 200 5.416271 TCCTGTTACCATCAACCTTAGAC 57.584 43.478 0.00 0.00 0.00 2.59
200 201 4.469945 CCTCCTGTTACCATCAACCTTAGA 59.530 45.833 0.00 0.00 0.00 2.10
201 202 4.225267 ACCTCCTGTTACCATCAACCTTAG 59.775 45.833 0.00 0.00 0.00 2.18
202 203 4.019681 CACCTCCTGTTACCATCAACCTTA 60.020 45.833 0.00 0.00 0.00 2.69
203 204 2.986728 ACCTCCTGTTACCATCAACCTT 59.013 45.455 0.00 0.00 0.00 3.50
204 205 2.305927 CACCTCCTGTTACCATCAACCT 59.694 50.000 0.00 0.00 0.00 3.50
205 206 2.618045 CCACCTCCTGTTACCATCAACC 60.618 54.545 0.00 0.00 0.00 3.77
206 207 2.618045 CCCACCTCCTGTTACCATCAAC 60.618 54.545 0.00 0.00 0.00 3.18
207 208 1.633432 CCCACCTCCTGTTACCATCAA 59.367 52.381 0.00 0.00 0.00 2.57
208 209 1.285280 CCCACCTCCTGTTACCATCA 58.715 55.000 0.00 0.00 0.00 3.07
209 210 0.546598 CCCCACCTCCTGTTACCATC 59.453 60.000 0.00 0.00 0.00 3.51
210 211 0.919289 CCCCCACCTCCTGTTACCAT 60.919 60.000 0.00 0.00 0.00 3.55
211 212 1.540367 CCCCCACCTCCTGTTACCA 60.540 63.158 0.00 0.00 0.00 3.25
212 213 1.229723 TCCCCCACCTCCTGTTACC 60.230 63.158 0.00 0.00 0.00 2.85
213 214 0.838987 TGTCCCCCACCTCCTGTTAC 60.839 60.000 0.00 0.00 0.00 2.50
215 216 2.154074 GTGTCCCCCACCTCCTGTT 61.154 63.158 0.00 0.00 38.18 3.16
216 217 2.529389 GTGTCCCCCACCTCCTGT 60.529 66.667 0.00 0.00 38.18 4.00
217 218 3.706373 CGTGTCCCCCACCTCCTG 61.706 72.222 0.00 0.00 41.26 3.86
218 219 3.254035 ATCGTGTCCCCCACCTCCT 62.254 63.158 0.00 0.00 41.26 3.69
219 220 2.687566 ATCGTGTCCCCCACCTCC 60.688 66.667 0.00 0.00 41.26 4.30
220 221 1.838073 AACATCGTGTCCCCCACCTC 61.838 60.000 0.00 0.00 41.26 3.85
223 224 1.445871 GTAAACATCGTGTCCCCCAC 58.554 55.000 0.00 0.00 40.89 4.61
225 226 0.393402 GGGTAAACATCGTGTCCCCC 60.393 60.000 0.00 0.00 30.72 5.40
227 228 1.677820 CCTGGGTAAACATCGTGTCCC 60.678 57.143 0.00 0.00 35.85 4.46
228 229 1.002773 ACCTGGGTAAACATCGTGTCC 59.997 52.381 0.00 0.00 0.00 4.02
229 230 2.467566 ACCTGGGTAAACATCGTGTC 57.532 50.000 0.00 0.00 0.00 3.67
230 231 2.774687 GAACCTGGGTAAACATCGTGT 58.225 47.619 0.00 0.00 0.00 4.49
231 232 1.730064 CGAACCTGGGTAAACATCGTG 59.270 52.381 0.00 0.00 0.00 4.35
234 235 1.746470 CCCGAACCTGGGTAAACATC 58.254 55.000 0.00 0.00 44.76 3.06
235 236 3.970205 CCCGAACCTGGGTAAACAT 57.030 52.632 0.00 0.00 44.76 2.71
243 244 2.873557 TAGAGAGGGCCCGAACCTGG 62.874 65.000 18.44 0.00 38.79 4.45
244 245 0.760945 ATAGAGAGGGCCCGAACCTG 60.761 60.000 18.44 0.00 38.79 4.00
245 246 0.760945 CATAGAGAGGGCCCGAACCT 60.761 60.000 18.44 14.71 42.18 3.50
246 247 1.749033 CATAGAGAGGGCCCGAACC 59.251 63.158 18.44 7.31 0.00 3.62
248 249 0.470080 CTCCATAGAGAGGGCCCGAA 60.470 60.000 18.44 0.98 43.39 4.30
256 257 7.034967 AGTAGGGTATTACCTCCATAGAGAG 57.965 44.000 12.54 0.00 43.39 3.20
257 258 7.417811 AAGTAGGGTATTACCTCCATAGAGA 57.582 40.000 12.54 0.00 43.39 3.10
258 259 6.664384 GGAAGTAGGGTATTACCTCCATAGAG 59.336 46.154 12.54 0.00 42.09 2.43
259 260 6.337472 AGGAAGTAGGGTATTACCTCCATAGA 59.663 42.308 16.39 0.00 42.09 1.98
260 261 6.437793 CAGGAAGTAGGGTATTACCTCCATAG 59.562 46.154 16.39 6.09 42.09 2.23
262 263 5.155905 CAGGAAGTAGGGTATTACCTCCAT 58.844 45.833 16.39 4.17 42.09 3.41
264 265 3.324268 GCAGGAAGTAGGGTATTACCTCC 59.676 52.174 12.54 10.66 42.09 4.30
265 266 4.224762 AGCAGGAAGTAGGGTATTACCTC 58.775 47.826 12.54 2.11 42.09 3.85
266 267 4.282292 AGCAGGAAGTAGGGTATTACCT 57.718 45.455 12.54 2.07 44.75 3.08
267 268 4.407945 TCAAGCAGGAAGTAGGGTATTACC 59.592 45.833 4.11 4.11 37.60 2.85
268 269 5.609533 TCAAGCAGGAAGTAGGGTATTAC 57.390 43.478 0.00 0.00 0.00 1.89
270 271 5.191722 TCAATCAAGCAGGAAGTAGGGTATT 59.808 40.000 0.00 0.00 0.00 1.89
271 272 4.721776 TCAATCAAGCAGGAAGTAGGGTAT 59.278 41.667 0.00 0.00 0.00 2.73
273 274 2.912956 TCAATCAAGCAGGAAGTAGGGT 59.087 45.455 0.00 0.00 0.00 4.34
275 276 5.033589 AGATCAATCAAGCAGGAAGTAGG 57.966 43.478 0.00 0.00 0.00 3.18
276 277 6.111382 TCAAGATCAATCAAGCAGGAAGTAG 58.889 40.000 0.00 0.00 0.00 2.57
278 279 4.914983 TCAAGATCAATCAAGCAGGAAGT 58.085 39.130 0.00 0.00 0.00 3.01
279 280 5.589050 TCATCAAGATCAATCAAGCAGGAAG 59.411 40.000 0.00 0.00 0.00 3.46
280 281 5.503002 TCATCAAGATCAATCAAGCAGGAA 58.497 37.500 0.00 0.00 0.00 3.36
282 283 5.830000 TTCATCAAGATCAATCAAGCAGG 57.170 39.130 0.00 0.00 0.00 4.85
283 284 8.784043 TCATATTCATCAAGATCAATCAAGCAG 58.216 33.333 0.00 0.00 0.00 4.24
284 285 8.685838 TCATATTCATCAAGATCAATCAAGCA 57.314 30.769 0.00 0.00 0.00 3.91
306 307 9.201989 TGGTAGATCAACTCTTGTAATACTCAT 57.798 33.333 0.00 0.00 35.28 2.90
308 309 8.467598 TGTGGTAGATCAACTCTTGTAATACTC 58.532 37.037 0.00 0.00 35.28 2.59
309 310 8.362464 TGTGGTAGATCAACTCTTGTAATACT 57.638 34.615 0.00 0.00 35.28 2.12
312 313 7.907389 TCTTGTGGTAGATCAACTCTTGTAAT 58.093 34.615 0.00 0.00 35.28 1.89
313 314 7.297936 TCTTGTGGTAGATCAACTCTTGTAA 57.702 36.000 0.00 0.00 35.28 2.41
314 315 6.911250 TCTTGTGGTAGATCAACTCTTGTA 57.089 37.500 0.00 0.00 35.28 2.41
315 316 5.808366 TCTTGTGGTAGATCAACTCTTGT 57.192 39.130 0.00 0.00 35.28 3.16
316 317 6.900568 GATCTTGTGGTAGATCAACTCTTG 57.099 41.667 8.37 0.00 46.37 3.02
324 325 4.686554 GCCATTACGATCTTGTGGTAGATC 59.313 45.833 0.00 0.00 44.58 2.75
325 326 4.345257 AGCCATTACGATCTTGTGGTAGAT 59.655 41.667 0.00 0.00 37.58 1.98
326 327 3.704566 AGCCATTACGATCTTGTGGTAGA 59.295 43.478 0.00 0.00 32.56 2.59
328 329 5.601583 TTAGCCATTACGATCTTGTGGTA 57.398 39.130 0.00 0.00 32.56 3.25
330 331 5.448632 GGTTTTAGCCATTACGATCTTGTGG 60.449 44.000 0.00 0.00 0.00 4.17
332 333 4.638865 GGGTTTTAGCCATTACGATCTTGT 59.361 41.667 0.00 0.00 35.40 3.16
336 337 5.608449 ACTAGGGTTTTAGCCATTACGATC 58.392 41.667 0.00 0.00 38.48 3.69
337 338 5.625568 ACTAGGGTTTTAGCCATTACGAT 57.374 39.130 0.00 0.00 38.48 3.73
340 341 7.122138 AGACTACTAGGGTTTTAGCCATTAC 57.878 40.000 0.00 0.00 38.48 1.89
342 343 6.183360 GCTAGACTACTAGGGTTTTAGCCATT 60.183 42.308 15.89 0.00 44.33 3.16
343 344 5.304871 GCTAGACTACTAGGGTTTTAGCCAT 59.695 44.000 15.89 0.00 44.33 4.40
344 345 4.648307 GCTAGACTACTAGGGTTTTAGCCA 59.352 45.833 15.89 0.00 44.33 4.75
345 346 4.894705 AGCTAGACTACTAGGGTTTTAGCC 59.105 45.833 19.33 0.00 44.33 3.93
346 347 6.127394 ACAAGCTAGACTACTAGGGTTTTAGC 60.127 42.308 17.42 17.42 44.33 3.09
347 348 7.407393 ACAAGCTAGACTACTAGGGTTTTAG 57.593 40.000 0.00 1.58 44.33 1.85
348 349 8.910944 CATACAAGCTAGACTACTAGGGTTTTA 58.089 37.037 0.00 0.00 44.33 1.52
349 350 7.618512 TCATACAAGCTAGACTACTAGGGTTTT 59.381 37.037 0.00 0.00 44.33 2.43
350 351 7.124052 TCATACAAGCTAGACTACTAGGGTTT 58.876 38.462 0.00 0.00 44.33 3.27
351 352 6.670617 TCATACAAGCTAGACTACTAGGGTT 58.329 40.000 0.00 0.00 44.33 4.11
353 354 7.768807 AATCATACAAGCTAGACTACTAGGG 57.231 40.000 0.00 0.00 44.33 3.53
361 362 9.364989 GGAGAATCATAATCATACAAGCTAGAC 57.635 37.037 0.00 0.00 36.25 2.59
363 364 8.538701 AGGGAGAATCATAATCATACAAGCTAG 58.461 37.037 0.00 0.00 36.25 3.42
364 365 8.441311 AGGGAGAATCATAATCATACAAGCTA 57.559 34.615 0.00 0.00 36.25 3.32
367 368 9.868277 GTAGAGGGAGAATCATAATCATACAAG 57.132 37.037 0.00 0.00 36.25 3.16
368 369 8.523658 CGTAGAGGGAGAATCATAATCATACAA 58.476 37.037 0.00 0.00 36.25 2.41
369 370 7.122799 CCGTAGAGGGAGAATCATAATCATACA 59.877 40.741 0.00 0.00 36.25 2.29
372 373 6.153680 GTCCGTAGAGGGAGAATCATAATCAT 59.846 42.308 0.00 0.00 41.52 2.45
373 374 5.477291 GTCCGTAGAGGGAGAATCATAATCA 59.523 44.000 0.00 0.00 41.52 2.57
374 375 5.712917 AGTCCGTAGAGGGAGAATCATAATC 59.287 44.000 0.00 0.00 41.52 1.75
375 376 5.646215 AGTCCGTAGAGGGAGAATCATAAT 58.354 41.667 0.00 0.00 41.52 1.28
376 377 5.063017 AGTCCGTAGAGGGAGAATCATAA 57.937 43.478 0.00 0.00 41.52 1.90
377 378 4.726035 AGTCCGTAGAGGGAGAATCATA 57.274 45.455 0.00 0.00 41.52 2.15
378 379 3.603965 AGTCCGTAGAGGGAGAATCAT 57.396 47.619 0.00 0.00 41.52 2.45
380 381 4.037803 GGTTTAGTCCGTAGAGGGAGAATC 59.962 50.000 0.00 0.00 41.52 2.52
381 382 3.959449 GGTTTAGTCCGTAGAGGGAGAAT 59.041 47.826 0.00 0.00 41.52 2.40
383 384 2.357569 GGGTTTAGTCCGTAGAGGGAGA 60.358 54.545 0.00 0.00 41.52 3.71
385 386 1.642762 AGGGTTTAGTCCGTAGAGGGA 59.357 52.381 0.00 0.00 41.52 4.20
386 387 2.030371 GAGGGTTTAGTCCGTAGAGGG 58.970 57.143 0.00 0.00 41.52 4.30
387 388 2.030371 GGAGGGTTTAGTCCGTAGAGG 58.970 57.143 0.00 0.00 42.97 3.69
388 389 2.731572 TGGAGGGTTTAGTCCGTAGAG 58.268 52.381 0.00 0.00 35.37 2.43
389 390 2.905415 TGGAGGGTTTAGTCCGTAGA 57.095 50.000 0.00 0.00 35.37 2.59
390 391 4.482952 AATTGGAGGGTTTAGTCCGTAG 57.517 45.455 0.00 0.00 35.37 3.51
391 392 4.914177 AAATTGGAGGGTTTAGTCCGTA 57.086 40.909 0.00 0.00 35.37 4.02
393 394 4.581868 TGTAAATTGGAGGGTTTAGTCCG 58.418 43.478 0.00 0.00 35.37 4.79
394 395 7.498239 GTCTATGTAAATTGGAGGGTTTAGTCC 59.502 40.741 0.00 0.00 0.00 3.85
395 396 8.044908 TGTCTATGTAAATTGGAGGGTTTAGTC 58.955 37.037 0.00 0.00 0.00 2.59
396 397 7.827729 GTGTCTATGTAAATTGGAGGGTTTAGT 59.172 37.037 0.00 0.00 0.00 2.24
397 398 7.282450 GGTGTCTATGTAAATTGGAGGGTTTAG 59.718 40.741 0.00 0.00 0.00 1.85
398 399 7.114095 GGTGTCTATGTAAATTGGAGGGTTTA 58.886 38.462 0.00 0.00 0.00 2.01
399 400 5.949952 GGTGTCTATGTAAATTGGAGGGTTT 59.050 40.000 0.00 0.00 0.00 3.27
400 401 5.506708 GGTGTCTATGTAAATTGGAGGGTT 58.493 41.667 0.00 0.00 0.00 4.11
402 403 4.127171 CGGTGTCTATGTAAATTGGAGGG 58.873 47.826 0.00 0.00 0.00 4.30
403 404 4.127171 CCGGTGTCTATGTAAATTGGAGG 58.873 47.826 0.00 0.00 0.00 4.30
404 405 5.018539 TCCGGTGTCTATGTAAATTGGAG 57.981 43.478 0.00 0.00 0.00 3.86
405 406 4.141801 CCTCCGGTGTCTATGTAAATTGGA 60.142 45.833 0.00 0.00 0.00 3.53
406 407 4.127171 CCTCCGGTGTCTATGTAAATTGG 58.873 47.826 0.00 0.00 0.00 3.16
407 408 4.127171 CCCTCCGGTGTCTATGTAAATTG 58.873 47.826 0.00 0.00 0.00 2.32
408 409 3.135895 CCCCTCCGGTGTCTATGTAAATT 59.864 47.826 0.00 0.00 0.00 1.82
409 410 2.704065 CCCCTCCGGTGTCTATGTAAAT 59.296 50.000 0.00 0.00 0.00 1.40
411 412 1.288633 TCCCCTCCGGTGTCTATGTAA 59.711 52.381 0.00 0.00 0.00 2.41
412 413 0.928505 TCCCCTCCGGTGTCTATGTA 59.071 55.000 0.00 0.00 0.00 2.29
414 415 0.397254 AGTCCCCTCCGGTGTCTATG 60.397 60.000 0.00 0.00 0.00 2.23
415 416 1.145325 CTAGTCCCCTCCGGTGTCTAT 59.855 57.143 0.00 0.00 0.00 1.98
416 417 0.549950 CTAGTCCCCTCCGGTGTCTA 59.450 60.000 0.00 0.00 0.00 2.59
417 418 1.306970 CTAGTCCCCTCCGGTGTCT 59.693 63.158 0.00 0.00 0.00 3.41
419 420 2.363361 CCTAGTCCCCTCCGGTGT 59.637 66.667 0.00 0.00 0.00 4.16
421 422 2.564948 AACCCTAGTCCCCTCCGGT 61.565 63.158 0.00 0.00 0.00 5.28
426 427 1.720533 TCTGTACAACCCTAGTCCCCT 59.279 52.381 0.00 0.00 0.00 4.79
428 429 2.759535 GACTCTGTACAACCCTAGTCCC 59.240 54.545 0.00 0.00 0.00 4.46
430 431 2.422832 CCGACTCTGTACAACCCTAGTC 59.577 54.545 0.00 4.75 0.00 2.59
432 433 2.444421 ACCGACTCTGTACAACCCTAG 58.556 52.381 0.00 0.00 0.00 3.02
433 434 2.592102 ACCGACTCTGTACAACCCTA 57.408 50.000 0.00 0.00 0.00 3.53
434 435 1.713297 AACCGACTCTGTACAACCCT 58.287 50.000 0.00 0.00 0.00 4.34
435 436 2.297033 TGTAACCGACTCTGTACAACCC 59.703 50.000 0.00 0.00 0.00 4.11
436 437 3.243501 TGTGTAACCGACTCTGTACAACC 60.244 47.826 0.00 0.00 34.36 3.77
439 440 3.479489 TCTGTGTAACCGACTCTGTACA 58.521 45.455 0.00 0.00 34.36 2.90
441 442 4.022589 CCTTTCTGTGTAACCGACTCTGTA 60.023 45.833 0.00 0.00 34.36 2.74
442 443 3.243771 CCTTTCTGTGTAACCGACTCTGT 60.244 47.826 0.00 0.00 34.36 3.41
443 444 3.005472 TCCTTTCTGTGTAACCGACTCTG 59.995 47.826 0.00 0.00 34.36 3.35
444 445 3.228453 TCCTTTCTGTGTAACCGACTCT 58.772 45.455 0.00 0.00 34.36 3.24
445 446 3.655276 TCCTTTCTGTGTAACCGACTC 57.345 47.619 0.00 0.00 34.36 3.36
446 447 4.283722 AGATTCCTTTCTGTGTAACCGACT 59.716 41.667 0.00 0.00 34.36 4.18
447 448 4.566987 AGATTCCTTTCTGTGTAACCGAC 58.433 43.478 0.00 0.00 34.36 4.79
454 455 9.829507 CTAGATAATGAAGATTCCTTTCTGTGT 57.170 33.333 0.00 0.00 31.62 3.72
459 460 9.927668 CCTCTCTAGATAATGAAGATTCCTTTC 57.072 37.037 0.00 0.00 31.62 2.62
461 462 9.088987 GTCCTCTCTAGATAATGAAGATTCCTT 57.911 37.037 0.00 0.00 34.81 3.36
462 463 8.456124 AGTCCTCTCTAGATAATGAAGATTCCT 58.544 37.037 0.00 0.00 0.00 3.36
463 464 8.650143 AGTCCTCTCTAGATAATGAAGATTCC 57.350 38.462 0.00 0.00 0.00 3.01
466 467 9.739276 CACTAGTCCTCTCTAGATAATGAAGAT 57.261 37.037 7.58 0.00 39.57 2.40
468 469 8.999431 GTCACTAGTCCTCTCTAGATAATGAAG 58.001 40.741 7.58 0.00 39.57 3.02
469 470 8.495260 TGTCACTAGTCCTCTCTAGATAATGAA 58.505 37.037 7.58 0.00 39.57 2.57
470 471 8.035448 TGTCACTAGTCCTCTCTAGATAATGA 57.965 38.462 7.58 0.00 39.57 2.57
471 472 8.862325 ATGTCACTAGTCCTCTCTAGATAATG 57.138 38.462 7.58 0.00 39.57 1.90
472 473 7.822334 CGATGTCACTAGTCCTCTCTAGATAAT 59.178 40.741 7.58 0.00 39.57 1.28
473 474 7.156000 CGATGTCACTAGTCCTCTCTAGATAA 58.844 42.308 7.58 0.00 39.57 1.75
474 475 6.295405 CCGATGTCACTAGTCCTCTCTAGATA 60.295 46.154 7.58 0.00 39.57 1.98
475 476 5.512404 CCGATGTCACTAGTCCTCTCTAGAT 60.512 48.000 7.58 0.00 39.57 1.98
477 478 4.062293 CCGATGTCACTAGTCCTCTCTAG 58.938 52.174 0.00 0.00 41.99 2.43
478 479 3.744846 GCCGATGTCACTAGTCCTCTCTA 60.745 52.174 0.00 0.00 0.00 2.43
480 481 1.335496 GCCGATGTCACTAGTCCTCTC 59.665 57.143 0.00 0.00 0.00 3.20
481 482 1.341089 TGCCGATGTCACTAGTCCTCT 60.341 52.381 0.00 0.00 0.00 3.69
482 483 1.103803 TGCCGATGTCACTAGTCCTC 58.896 55.000 0.00 0.00 0.00 3.71
483 484 0.818296 GTGCCGATGTCACTAGTCCT 59.182 55.000 0.00 0.00 0.00 3.85
484 485 0.530744 TGTGCCGATGTCACTAGTCC 59.469 55.000 0.00 0.00 35.58 3.85
488 489 2.616960 GTCAATGTGCCGATGTCACTA 58.383 47.619 0.00 0.00 35.58 2.74
489 490 1.442769 GTCAATGTGCCGATGTCACT 58.557 50.000 0.00 0.00 35.58 3.41
490 491 0.095245 CGTCAATGTGCCGATGTCAC 59.905 55.000 0.00 0.00 35.14 3.67
491 492 1.018752 CCGTCAATGTGCCGATGTCA 61.019 55.000 0.00 0.00 0.00 3.58
492 493 1.715585 CCGTCAATGTGCCGATGTC 59.284 57.895 0.00 0.00 0.00 3.06
493 494 2.398554 GCCGTCAATGTGCCGATGT 61.399 57.895 0.00 0.00 0.00 3.06
494 495 2.040213 GAGCCGTCAATGTGCCGATG 62.040 60.000 0.00 0.00 0.00 3.84
495 496 1.815421 GAGCCGTCAATGTGCCGAT 60.815 57.895 0.00 0.00 0.00 4.18
496 497 2.434185 GAGCCGTCAATGTGCCGA 60.434 61.111 0.00 0.00 0.00 5.54
514 515 1.470098 GAGCATTGCCGTTGTCAGAAT 59.530 47.619 4.70 0.00 0.00 2.40
523 524 1.301716 ACTGAACGAGCATTGCCGT 60.302 52.632 16.12 16.12 37.13 5.68
546 549 2.684001 AAATTGCGTCGAGGTCCATA 57.316 45.000 7.01 0.00 0.00 2.74
659 3211 3.451178 GCCCTACCTTGTACATCTCTTCA 59.549 47.826 0.00 0.00 0.00 3.02
670 3222 1.423541 TGTGATTGTGCCCTACCTTGT 59.576 47.619 0.00 0.00 0.00 3.16
681 3233 2.347846 GCGCTTGCTTTTTGTGATTGTG 60.348 45.455 0.00 0.00 35.07 3.33
705 3257 8.519799 ACCTTGTTGTCATTTTCTCTCTTTTA 57.480 30.769 0.00 0.00 0.00 1.52
732 3284 1.017701 CGTTCCACGGAAACCCTAGC 61.018 60.000 0.00 0.00 38.08 3.42
744 3296 2.557317 TGTTGTCTTTCCTCGTTCCAC 58.443 47.619 0.00 0.00 0.00 4.02
840 3392 2.907458 TGGTGGATCTGAGAGACTCA 57.093 50.000 5.02 0.00 38.25 3.41
931 3506 3.054875 AGCAAGCATACAGACCAATCTCA 60.055 43.478 0.00 0.00 30.42 3.27
937 3512 0.608130 ACGAGCAAGCATACAGACCA 59.392 50.000 0.00 0.00 0.00 4.02
946 3521 4.350245 ACCCCTATATATACGAGCAAGCA 58.650 43.478 0.00 0.00 0.00 3.91
947 3522 4.497674 CGACCCCTATATATACGAGCAAGC 60.498 50.000 0.00 0.00 0.00 4.01
948 3523 4.497674 GCGACCCCTATATATACGAGCAAG 60.498 50.000 0.00 0.00 0.00 4.01
949 3524 3.379372 GCGACCCCTATATATACGAGCAA 59.621 47.826 0.00 0.00 0.00 3.91
1010 3615 6.184789 AGGAGGAGTAGAAGAAGTGAAGTAG 58.815 44.000 0.00 0.00 0.00 2.57
1018 3623 4.338118 CAGCAGTAGGAGGAGTAGAAGAAG 59.662 50.000 0.00 0.00 0.00 2.85
1427 4035 3.697439 TACTTGGGCATCAGGCGGC 62.697 63.158 0.00 0.00 46.16 6.53
1494 4102 2.586635 GTGAACGTGTCGGTGGCA 60.587 61.111 0.00 0.00 0.00 4.92
1832 4464 2.034048 GAAGGTCTCCTCCGGGATGC 62.034 65.000 0.00 0.00 41.36 3.91
1861 4505 1.229625 TGCTGAGGATCACCCCACT 60.230 57.895 0.00 0.00 42.56 4.00
1863 4507 2.300967 GGTGCTGAGGATCACCCCA 61.301 63.158 0.00 0.00 42.56 4.96
1932 4576 2.026449 CAGGATCTGGGTCAAGAGCTTT 60.026 50.000 0.00 0.00 33.07 3.51
1945 4589 0.252479 ACCTTCTGCTGCAGGATCTG 59.748 55.000 27.79 13.97 33.90 2.90
1980 4624 3.470888 CGGTCCTCATCGGGGCTT 61.471 66.667 0.00 0.00 0.00 4.35
2347 5005 3.132289 TGGAACTAGAAGATAAGCACCCG 59.868 47.826 0.00 0.00 0.00 5.28
2355 5013 4.804597 TGGCTAGCTGGAACTAGAAGATA 58.195 43.478 15.72 0.00 41.92 1.98
2384 5042 6.070767 ACTGCAGCATAGGATTATTATACCGT 60.071 38.462 15.27 0.00 0.00 4.83
2476 5138 7.670559 GGAGTAGTACATAACACTATCCCTGAT 59.329 40.741 2.52 0.00 31.46 2.90
2477 5139 7.002879 GGAGTAGTACATAACACTATCCCTGA 58.997 42.308 2.52 0.00 31.46 3.86
2478 5140 6.208994 GGGAGTAGTACATAACACTATCCCTG 59.791 46.154 2.52 0.00 39.77 4.45
2479 5141 6.104392 AGGGAGTAGTACATAACACTATCCCT 59.896 42.308 12.86 12.86 43.21 4.20
2481 5143 6.433716 GGAGGGAGTAGTACATAACACTATCC 59.566 46.154 2.52 0.00 31.46 2.59
2482 5144 6.149142 CGGAGGGAGTAGTACATAACACTATC 59.851 46.154 2.52 0.00 31.46 2.08
2484 5146 5.371526 CGGAGGGAGTAGTACATAACACTA 58.628 45.833 2.52 0.00 0.00 2.74
2485 5147 4.205587 CGGAGGGAGTAGTACATAACACT 58.794 47.826 2.52 0.00 0.00 3.55
2488 5150 3.220940 AGCGGAGGGAGTAGTACATAAC 58.779 50.000 2.52 0.00 0.00 1.89
2492 5154 0.917533 AGAGCGGAGGGAGTAGTACA 59.082 55.000 2.52 0.00 0.00 2.90
2493 5155 2.926778 TAGAGCGGAGGGAGTAGTAC 57.073 55.000 0.00 0.00 0.00 2.73
2494 5156 3.939740 TTTAGAGCGGAGGGAGTAGTA 57.060 47.619 0.00 0.00 0.00 1.82
2496 5158 5.071370 TCTATTTTAGAGCGGAGGGAGTAG 58.929 45.833 0.00 0.00 0.00 2.57
2508 5191 8.467402 ACGAAGTTGTGTCATCTATTTTAGAG 57.533 34.615 0.00 0.00 37.78 2.43
2522 5205 8.624776 ACTAAAGTTAGTACTACGAAGTTGTGT 58.375 33.333 0.91 0.63 39.20 3.72
2537 5220 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
2538 5221 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
2539 5222 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
2542 5225 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
2543 5226 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
2545 5228 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2547 5230 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2549 5232 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2552 5235 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2554 5237 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2555 5238 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2556 5239 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2557 5240 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2560 5318 4.714802 TCCTCTCCGTTCCAAAATAGATGA 59.285 41.667 0.00 0.00 0.00 2.92
2563 5321 6.801718 TTATCCTCTCCGTTCCAAAATAGA 57.198 37.500 0.00 0.00 0.00 1.98
2564 5322 9.555727 TTATTTATCCTCTCCGTTCCAAAATAG 57.444 33.333 0.00 0.00 0.00 1.73
2570 5328 5.684030 GCAGTTATTTATCCTCTCCGTTCCA 60.684 44.000 0.00 0.00 0.00 3.53
2577 5335 6.429078 TCATGCATGCAGTTATTTATCCTCTC 59.571 38.462 26.69 0.00 0.00 3.20
2580 5338 6.920817 CATCATGCATGCAGTTATTTATCCT 58.079 36.000 26.69 0.84 0.00 3.24
2605 5371 6.981762 ACAGCTTCTGACATAAGAATCTTG 57.018 37.500 5.64 0.00 35.67 3.02
2628 5394 8.902540 AAAGACGGACATTATATTGATGCTTA 57.097 30.769 1.71 0.00 0.00 3.09
2634 5400 8.731275 ACAATGAAAGACGGACATTATATTGA 57.269 30.769 0.00 0.00 33.73 2.57
2648 5414 7.148523 CCCCTTACTACGTTAACAATGAAAGAC 60.149 40.741 6.39 0.00 0.00 3.01
2663 5429 1.692519 CCTTCCATCCCCCTTACTACG 59.307 57.143 0.00 0.00 0.00 3.51
2665 5431 1.060876 CCCCTTCCATCCCCCTTACTA 60.061 57.143 0.00 0.00 0.00 1.82
2667 5433 1.361176 CCCCCTTCCATCCCCCTTAC 61.361 65.000 0.00 0.00 0.00 2.34
2668 5434 1.006902 CCCCCTTCCATCCCCCTTA 59.993 63.158 0.00 0.00 0.00 2.69
2669 5435 2.241990 ATCCCCCTTCCATCCCCCTT 62.242 60.000 0.00 0.00 0.00 3.95
2670 5436 2.683028 ATCCCCCTTCCATCCCCCT 61.683 63.158 0.00 0.00 0.00 4.79
2671 5437 2.037238 ATCCCCCTTCCATCCCCC 60.037 66.667 0.00 0.00 0.00 5.40
2674 5440 2.074113 GAGCCATCCCCCTTCCATCC 62.074 65.000 0.00 0.00 0.00 3.51
2675 5441 1.458045 GAGCCATCCCCCTTCCATC 59.542 63.158 0.00 0.00 0.00 3.51
2676 5442 2.087461 GGAGCCATCCCCCTTCCAT 61.087 63.158 0.00 0.00 40.03 3.41
2677 5443 2.696125 GGAGCCATCCCCCTTCCA 60.696 66.667 0.00 0.00 40.03 3.53
2750 5650 1.201647 CACTGGTAGTAGGTGGTGTCG 59.798 57.143 0.00 0.00 0.00 4.35
2779 5707 6.322491 GTCACACTATTTTTGGTAGAATGCC 58.678 40.000 0.00 0.00 43.46 4.40
2780 5708 6.322491 GGTCACACTATTTTTGGTAGAATGC 58.678 40.000 0.00 0.00 0.00 3.56
2788 5716 4.459337 GGAGAAGGGTCACACTATTTTTGG 59.541 45.833 0.00 0.00 0.00 3.28
2842 5777 2.483877 TGCTTGAGAACGCATAAGGTTG 59.516 45.455 0.00 0.00 0.00 3.77
2850 5785 4.428209 TCAAATTTTTGCTTGAGAACGCA 58.572 34.783 0.00 0.00 38.05 5.24
2851 5786 5.580911 ATCAAATTTTTGCTTGAGAACGC 57.419 34.783 0.00 0.00 38.05 4.84
2855 5790 8.954950 TGGTTTTATCAAATTTTTGCTTGAGA 57.045 26.923 0.00 0.00 38.05 3.27
2871 5806 8.568794 GGCTAGATGGATAACTTTGGTTTTATC 58.431 37.037 0.00 0.00 36.92 1.75
2872 5807 7.505923 GGGCTAGATGGATAACTTTGGTTTTAT 59.494 37.037 0.00 0.00 36.92 1.40
2873 5808 6.831868 GGGCTAGATGGATAACTTTGGTTTTA 59.168 38.462 0.00 0.00 36.92 1.52
2874 5809 5.656859 GGGCTAGATGGATAACTTTGGTTTT 59.343 40.000 0.00 0.00 36.92 2.43
2927 5862 1.696336 AGCTTGCAGAGAAGACAAGGA 59.304 47.619 0.00 0.00 40.87 3.36
2975 5912 6.015856 CAGTTACCTAGCTGAGCATGTACTAT 60.016 42.308 7.39 0.00 36.76 2.12
3057 6009 8.726068 ACGGAAAAACAACAAAAAGAAATGAAT 58.274 25.926 0.00 0.00 0.00 2.57
3059 6011 7.659652 ACGGAAAAACAACAAAAAGAAATGA 57.340 28.000 0.00 0.00 0.00 2.57
3082 6046 7.575332 TCTTTGTGCTCAAGTTTGTTTAAAC 57.425 32.000 11.54 11.54 45.13 2.01
3087 6051 9.463443 GTATAATTCTTTGTGCTCAAGTTTGTT 57.537 29.630 0.98 0.00 34.88 2.83
3112 6076 7.530426 AAAGCTCCATATCTTGACTTTTTGT 57.470 32.000 0.00 0.00 0.00 2.83
3129 6093 1.826720 TGGGCATGAATGAAAAGCTCC 59.173 47.619 0.00 0.00 0.00 4.70
3130 6094 2.494870 AGTGGGCATGAATGAAAAGCTC 59.505 45.455 0.00 0.00 0.00 4.09
3176 6140 3.206150 CACCACAACTGAAGTAAGTGCT 58.794 45.455 9.34 0.00 34.72 4.40
3183 6147 1.133823 TGGATGCACCACAACTGAAGT 60.134 47.619 4.16 0.00 44.64 3.01
3215 6179 5.655090 ACGGGAACTAAATTAAAATGGAGGG 59.345 40.000 0.00 0.00 0.00 4.30
3216 6180 6.769134 ACGGGAACTAAATTAAAATGGAGG 57.231 37.500 0.00 0.00 0.00 4.30
3225 6189 9.737844 ACCAAAACTAATACGGGAACTAAATTA 57.262 29.630 0.00 0.00 0.00 1.40
3226 6190 8.640063 ACCAAAACTAATACGGGAACTAAATT 57.360 30.769 0.00 0.00 0.00 1.82
3227 6191 7.884354 TGACCAAAACTAATACGGGAACTAAAT 59.116 33.333 0.00 0.00 0.00 1.40
3228 6192 7.222872 TGACCAAAACTAATACGGGAACTAAA 58.777 34.615 0.00 0.00 0.00 1.85
3229 6193 6.767456 TGACCAAAACTAATACGGGAACTAA 58.233 36.000 0.00 0.00 0.00 2.24
3230 6194 6.357579 TGACCAAAACTAATACGGGAACTA 57.642 37.500 0.00 0.00 0.00 2.24
3231 6195 5.231702 TGACCAAAACTAATACGGGAACT 57.768 39.130 0.00 0.00 0.00 3.01
3232 6196 5.945466 TTGACCAAAACTAATACGGGAAC 57.055 39.130 0.00 0.00 0.00 3.62
3233 6197 6.063404 ACTTTGACCAAAACTAATACGGGAA 58.937 36.000 0.00 0.00 0.00 3.97
3234 6198 5.623169 ACTTTGACCAAAACTAATACGGGA 58.377 37.500 0.00 0.00 0.00 5.14
3235 6199 5.470777 TGACTTTGACCAAAACTAATACGGG 59.529 40.000 0.00 0.00 0.00 5.28
3236 6200 6.548441 TGACTTTGACCAAAACTAATACGG 57.452 37.500 0.00 0.00 0.00 4.02
3237 6201 7.586300 CACTTGACTTTGACCAAAACTAATACG 59.414 37.037 0.00 0.00 0.00 3.06
3238 6202 8.403236 ACACTTGACTTTGACCAAAACTAATAC 58.597 33.333 0.00 0.00 0.00 1.89
3239 6203 8.514330 ACACTTGACTTTGACCAAAACTAATA 57.486 30.769 0.00 0.00 0.00 0.98
3240 6204 7.404671 ACACTTGACTTTGACCAAAACTAAT 57.595 32.000 0.00 0.00 0.00 1.73
3241 6205 6.827586 ACACTTGACTTTGACCAAAACTAA 57.172 33.333 0.00 0.00 0.00 2.24
3242 6206 6.207810 ACAACACTTGACTTTGACCAAAACTA 59.792 34.615 0.00 0.00 0.00 2.24
3243 6207 5.010617 ACAACACTTGACTTTGACCAAAACT 59.989 36.000 0.00 0.00 0.00 2.66
3244 6208 5.227152 ACAACACTTGACTTTGACCAAAAC 58.773 37.500 0.00 0.00 0.00 2.43
3245 6209 5.461032 ACAACACTTGACTTTGACCAAAA 57.539 34.783 0.00 0.00 0.00 2.44
3246 6210 6.576662 TTACAACACTTGACTTTGACCAAA 57.423 33.333 0.00 0.00 0.00 3.28
3247 6211 6.576662 TTTACAACACTTGACTTTGACCAA 57.423 33.333 0.00 0.00 0.00 3.67
3248 6212 6.576662 TTTTACAACACTTGACTTTGACCA 57.423 33.333 0.00 0.00 0.00 4.02
3249 6213 8.379902 CAAATTTTACAACACTTGACTTTGACC 58.620 33.333 0.00 0.00 0.00 4.02
3250 6214 9.134734 TCAAATTTTACAACACTTGACTTTGAC 57.865 29.630 0.00 0.00 0.00 3.18
3251 6215 9.134734 GTCAAATTTTACAACACTTGACTTTGA 57.865 29.630 5.69 0.00 39.54 2.69
3252 6216 8.920665 TGTCAAATTTTACAACACTTGACTTTG 58.079 29.630 2.70 0.00 41.91 2.77
3253 6217 9.482627 TTGTCAAATTTTACAACACTTGACTTT 57.517 25.926 12.75 0.00 41.91 2.66
3254 6218 9.482627 TTTGTCAAATTTTACAACACTTGACTT 57.517 25.926 15.70 0.00 41.91 3.01
3255 6219 9.482627 TTTTGTCAAATTTTACAACACTTGACT 57.517 25.926 15.70 0.00 41.91 3.41
3320 6284 9.139734 AGCACATTTGATATTGAATCTAATGGT 57.860 29.630 19.15 8.23 41.85 3.55
3321 6285 9.976511 AAGCACATTTGATATTGAATCTAATGG 57.023 29.630 19.15 12.49 41.85 3.16
3325 6289 9.304731 GCAAAAGCACATTTGATATTGAATCTA 57.695 29.630 12.17 0.00 41.73 1.98
3326 6290 7.820386 TGCAAAAGCACATTTGATATTGAATCT 59.180 29.630 12.17 0.00 41.73 2.40
3327 6291 7.966111 TGCAAAAGCACATTTGATATTGAATC 58.034 30.769 12.17 0.00 41.73 2.52
3328 6292 7.908827 TGCAAAAGCACATTTGATATTGAAT 57.091 28.000 12.17 0.00 41.73 2.57
3329 6293 7.603024 TGATGCAAAAGCACATTTGATATTGAA 59.397 29.630 12.17 0.00 41.73 2.69
3330 6294 7.097834 TGATGCAAAAGCACATTTGATATTGA 58.902 30.769 12.17 0.00 41.73 2.57
3331 6295 7.297229 TGATGCAAAAGCACATTTGATATTG 57.703 32.000 12.17 0.00 41.73 1.90
3332 6296 8.500753 AATGATGCAAAAGCACATTTGATATT 57.499 26.923 12.17 5.27 41.73 1.28
3333 6297 8.500753 AAATGATGCAAAAGCACATTTGATAT 57.499 26.923 19.81 6.66 41.73 1.63
3334 6298 7.908827 AAATGATGCAAAAGCACATTTGATA 57.091 28.000 19.81 2.99 41.73 2.15
3335 6299 6.811253 AAATGATGCAAAAGCACATTTGAT 57.189 29.167 19.81 4.84 41.73 2.57
3336 6300 6.621316 AAAATGATGCAAAAGCACATTTGA 57.379 29.167 20.54 1.11 41.73 2.69
3337 6301 8.958175 ATTAAAATGATGCAAAAGCACATTTG 57.042 26.923 20.54 5.56 39.81 2.32
3338 6302 9.968870 AAATTAAAATGATGCAAAAGCACATTT 57.031 22.222 17.18 17.18 41.03 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.