Multiple sequence alignment - TraesCS4A01G472600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G472600 chr4A 100.000 3757 0 0 1 3757 732777944 732781700 0.000000e+00 6938
1 TraesCS4A01G472600 chr4A 88.636 88 10 0 3040 3127 732789055 732789142 1.430000e-19 108
2 TraesCS4A01G472600 chr7A 84.976 2283 190 76 786 2974 8381046 8383269 0.000000e+00 2174
3 TraesCS4A01G472600 chr7A 82.374 556 73 14 11 552 8380455 8380999 9.510000e-126 460
4 TraesCS4A01G472600 chr7A 86.528 386 24 10 3382 3757 8383596 8383963 2.100000e-107 399
5 TraesCS4A01G472600 chr7A 82.540 126 18 3 3005 3127 8403917 8404041 1.430000e-19 108
6 TraesCS4A01G472600 chr7A 82.540 126 18 3 3005 3127 8410729 8410853 1.430000e-19 108
7 TraesCS4A01G472600 chr7D 81.882 1435 95 67 1699 3035 7454582 7455949 0.000000e+00 1057
8 TraesCS4A01G472600 chr7D 88.415 820 35 23 786 1571 7453659 7454452 0.000000e+00 933
9 TraesCS4A01G472600 chr7D 79.050 358 63 10 2406 2760 632354551 632354899 6.270000e-58 235
10 TraesCS4A01G472600 chr7D 76.688 459 85 15 2316 2760 632362840 632363290 6.270000e-58 235
11 TraesCS4A01G472600 chr7D 77.462 457 59 17 3248 3689 7462484 7462911 2.260000e-57 233
12 TraesCS4A01G472600 chr7D 76.355 406 38 25 3213 3583 7458718 7459100 8.350000e-37 165
13 TraesCS4A01G472600 chr7D 93.182 88 6 0 3040 3127 7458316 7458403 3.050000e-26 130
14 TraesCS4A01G472600 chr7D 88.636 88 10 0 3040 3127 7465766 7465853 1.430000e-19 108
15 TraesCS4A01G472600 chr6D 92.408 382 16 8 998 1366 803600 803981 1.990000e-147 532
16 TraesCS4A01G472600 chr6D 86.120 317 24 15 2558 2865 804660 804965 1.300000e-84 324
17 TraesCS4A01G472600 chr6D 79.004 462 79 9 901 1349 1539921 1539465 2.190000e-77 300
18 TraesCS4A01G472600 chr6B 92.147 382 17 8 994 1363 3382969 3383349 9.240000e-146 527
19 TraesCS4A01G472600 chr6B 81.466 464 54 17 2408 2865 3383875 3384312 5.970000e-93 351
20 TraesCS4A01G472600 chr6A 92.147 382 17 8 994 1363 286326 286706 9.240000e-146 527
21 TraesCS4A01G472600 chr6A 81.425 463 53 18 2409 2865 287268 287703 7.720000e-92 348
22 TraesCS4A01G472600 chr6A 77.927 521 83 19 849 1349 8387818 8388326 2.840000e-76 296
23 TraesCS4A01G472600 chr5D 87.647 340 27 10 1022 1346 515094285 515093946 7.610000e-102 381
24 TraesCS4A01G472600 chr5D 82.609 322 48 5 1030 1347 426165126 426164809 1.030000e-70 278
25 TraesCS4A01G472600 chr7B 76.095 548 96 25 2228 2760 744506718 744507245 1.730000e-63 254
26 TraesCS4A01G472600 chr7B 75.912 548 97 25 2228 2760 744462495 744463022 8.060000e-62 248
27 TraesCS4A01G472600 chr7B 75.730 548 98 25 2228 2760 744495125 744495652 3.750000e-60 243
28 TraesCS4A01G472600 chr7B 75.547 548 98 25 2228 2760 744484223 744484749 1.740000e-58 237
29 TraesCS4A01G472600 chr3B 91.477 176 15 0 2583 2758 798408526 798408351 3.750000e-60 243
30 TraesCS4A01G472600 chr3D 89.773 176 18 0 2583 2758 594958024 594957849 3.780000e-55 226
31 TraesCS4A01G472600 chr2B 77.622 429 57 19 1170 1571 452384929 452384513 1.360000e-54 224
32 TraesCS4A01G472600 chr5A 88.119 101 2 4 3667 3757 439419716 439419616 1.100000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G472600 chr4A 732777944 732781700 3756 False 6938.000000 6938 100.0000 1 3757 1 chr4A.!!$F1 3756
1 TraesCS4A01G472600 chr7A 8380455 8383963 3508 False 1011.000000 2174 84.6260 11 3757 3 chr7A.!!$F3 3746
2 TraesCS4A01G472600 chr7D 7453659 7465853 12194 False 437.666667 1057 84.3220 786 3689 6 chr7D.!!$F3 2903
3 TraesCS4A01G472600 chr6D 803600 804965 1365 False 428.000000 532 89.2640 998 2865 2 chr6D.!!$F1 1867
4 TraesCS4A01G472600 chr6B 3382969 3384312 1343 False 439.000000 527 86.8065 994 2865 2 chr6B.!!$F1 1871
5 TraesCS4A01G472600 chr6A 286326 287703 1377 False 437.500000 527 86.7860 994 2865 2 chr6A.!!$F2 1871
6 TraesCS4A01G472600 chr6A 8387818 8388326 508 False 296.000000 296 77.9270 849 1349 1 chr6A.!!$F1 500
7 TraesCS4A01G472600 chr7B 744506718 744507245 527 False 254.000000 254 76.0950 2228 2760 1 chr7B.!!$F4 532
8 TraesCS4A01G472600 chr7B 744462495 744463022 527 False 248.000000 248 75.9120 2228 2760 1 chr7B.!!$F1 532
9 TraesCS4A01G472600 chr7B 744495125 744495652 527 False 243.000000 243 75.7300 2228 2760 1 chr7B.!!$F3 532
10 TraesCS4A01G472600 chr7B 744484223 744484749 526 False 237.000000 237 75.5470 2228 2760 1 chr7B.!!$F2 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 381 0.104144 TTTCCTCTCTTCCCCCACCA 60.104 55.0 0.00 0.00 0.00 4.17 F
676 689 0.107508 CCACCACGCCAGATCAAGAT 60.108 55.0 0.00 0.00 0.00 2.40 F
679 692 0.178767 CCACGCCAGATCAAGATCCA 59.821 55.0 6.45 0.00 38.58 3.41 F
1321 1392 0.313043 GTTCGTCAAGGTCGACCAGA 59.687 55.0 35.00 27.71 38.89 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1321 1392 0.252284 ATGAGGTCGAAGAGGGTGGT 60.252 55.0 0.0 0.00 36.95 4.16 R
2048 2332 0.390124 ACTACTGAACACCGCGGAAA 59.610 50.0 35.9 10.96 0.00 3.13 R
2633 2994 0.734889 CCTTGATCATGTCCGCAACC 59.265 55.0 0.0 0.00 0.00 3.77 R
2912 3294 0.371989 CGACACAGCAAACAACGACA 59.628 50.0 0.0 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.814954 ACCCAAGAGATGTATGTCTATGTT 57.185 37.500 0.00 0.00 29.33 2.71
28 29 7.727181 ACCCAAGAGATGTATGTCTATGTTAC 58.273 38.462 0.00 0.00 29.33 2.50
35 36 7.210174 AGATGTATGTCTATGTTACAACGCAT 58.790 34.615 0.00 0.00 30.29 4.73
37 38 5.522097 TGTATGTCTATGTTACAACGCATGG 59.478 40.000 0.00 0.00 0.00 3.66
39 40 2.031683 GTCTATGTTACAACGCATGGGC 59.968 50.000 10.10 0.00 0.00 5.36
44 45 0.963355 TTACAACGCATGGGCCCTTC 60.963 55.000 25.70 10.91 36.38 3.46
47 48 0.466189 CAACGCATGGGCCCTTCTAT 60.466 55.000 25.70 4.58 36.38 1.98
55 56 3.644966 TGGGCCCTTCTATTAGTGTTG 57.355 47.619 25.70 0.00 0.00 3.33
59 60 4.566907 GGGCCCTTCTATTAGTGTTGTCAA 60.567 45.833 17.04 0.00 0.00 3.18
60 61 4.395231 GGCCCTTCTATTAGTGTTGTCAAC 59.605 45.833 8.86 8.86 0.00 3.18
61 62 5.246307 GCCCTTCTATTAGTGTTGTCAACT 58.754 41.667 16.45 0.00 0.00 3.16
62 63 5.705905 GCCCTTCTATTAGTGTTGTCAACTT 59.294 40.000 16.45 7.71 0.00 2.66
63 64 6.877322 GCCCTTCTATTAGTGTTGTCAACTTA 59.123 38.462 16.45 6.81 0.00 2.24
64 65 7.553044 GCCCTTCTATTAGTGTTGTCAACTTAT 59.447 37.037 16.45 5.40 0.00 1.73
65 66 9.099454 CCCTTCTATTAGTGTTGTCAACTTATC 57.901 37.037 16.45 5.28 0.00 1.75
105 106 9.409312 CATCACATAAACTTAAATTTCAGTGCA 57.591 29.630 5.80 0.00 31.56 4.57
117 118 9.979578 TTAAATTTCAGTGCATATGACAAACTT 57.020 25.926 6.97 0.11 0.00 2.66
143 144 3.767278 GCTCAAGCAGAAGCCAAATTAG 58.233 45.455 0.00 0.00 43.56 1.73
157 158 7.494922 AGCCAAATTAGGAAACCACAAATAT 57.505 32.000 0.00 0.00 0.00 1.28
160 161 9.093970 GCCAAATTAGGAAACCACAAATATAAC 57.906 33.333 0.00 0.00 0.00 1.89
190 191 8.648698 TCCCAAGATTTAACTTTCATCAATGA 57.351 30.769 0.00 0.00 34.44 2.57
208 209 9.605275 CATCAATGATTAATCCATCTATACGGT 57.395 33.333 12.90 0.00 0.00 4.83
210 211 8.258007 TCAATGATTAATCCATCTATACGGTCC 58.742 37.037 12.90 0.00 0.00 4.46
215 216 9.099454 GATTAATCCATCTATACGGTCCAAATC 57.901 37.037 3.92 0.00 0.00 2.17
217 218 5.468540 TCCATCTATACGGTCCAAATCTG 57.531 43.478 0.00 0.00 0.00 2.90
218 219 5.144832 TCCATCTATACGGTCCAAATCTGA 58.855 41.667 0.00 0.00 0.00 3.27
219 220 5.780282 TCCATCTATACGGTCCAAATCTGAT 59.220 40.000 0.00 0.00 0.00 2.90
222 223 7.118390 CCATCTATACGGTCCAAATCTGATTTC 59.882 40.741 12.50 2.65 0.00 2.17
223 224 6.213677 TCTATACGGTCCAAATCTGATTTCG 58.786 40.000 12.50 14.49 0.00 3.46
224 225 3.053831 ACGGTCCAAATCTGATTTCGT 57.946 42.857 16.84 16.84 0.00 3.85
232 233 9.665264 GGTCCAAATCTGATTTCGTAATTATTC 57.335 33.333 12.50 0.00 0.00 1.75
234 235 9.104965 TCCAAATCTGATTTCGTAATTATTCGT 57.895 29.630 12.50 0.00 0.00 3.85
244 245 4.036027 TCGTAATTATTCGTCTCCGCTTCT 59.964 41.667 0.00 0.00 0.00 2.85
247 248 5.470845 AATTATTCGTCTCCGCTTCTTTG 57.529 39.130 0.00 0.00 0.00 2.77
251 252 1.063806 CGTCTCCGCTTCTTTGTGAG 58.936 55.000 0.00 0.00 0.00 3.51
265 266 7.468906 GCTTCTTTGTGAGGTACGATACTCTAT 60.469 40.741 0.00 0.00 34.84 1.98
266 267 7.876936 TCTTTGTGAGGTACGATACTCTATT 57.123 36.000 0.00 0.00 34.84 1.73
267 268 8.289939 TCTTTGTGAGGTACGATACTCTATTT 57.710 34.615 0.00 0.00 34.84 1.40
268 269 8.188799 TCTTTGTGAGGTACGATACTCTATTTG 58.811 37.037 0.00 0.00 34.84 2.32
269 270 7.400599 TTGTGAGGTACGATACTCTATTTGT 57.599 36.000 0.00 0.00 34.84 2.83
285 286 1.658686 TTGTCCACGTGTTGCCCAAC 61.659 55.000 15.65 4.26 41.50 3.77
287 288 2.518349 CCACGTGTTGCCCAACCT 60.518 61.111 15.65 0.00 40.46 3.50
288 289 2.721231 CACGTGTTGCCCAACCTG 59.279 61.111 7.58 3.95 40.46 4.00
301 302 3.437344 GCCCAACCTGCCCCTAATAAATA 60.437 47.826 0.00 0.00 0.00 1.40
315 317 0.918258 TAAATACCCCAACCCGACCC 59.082 55.000 0.00 0.00 0.00 4.46
316 318 0.847758 AAATACCCCAACCCGACCCT 60.848 55.000 0.00 0.00 0.00 4.34
334 344 0.251742 CTGAAGCCCAACCCATCCAA 60.252 55.000 0.00 0.00 0.00 3.53
337 347 0.831711 AAGCCCAACCCATCCAACAC 60.832 55.000 0.00 0.00 0.00 3.32
346 356 1.331214 CCATCCAACACCAAAGCACT 58.669 50.000 0.00 0.00 0.00 4.40
354 364 4.441913 CCAACACCAAAGCACTCATCTTTT 60.442 41.667 0.00 0.00 31.94 2.27
356 366 3.319122 ACACCAAAGCACTCATCTTTTCC 59.681 43.478 0.00 0.00 31.94 3.13
357 367 3.571401 CACCAAAGCACTCATCTTTTCCT 59.429 43.478 0.00 0.00 31.94 3.36
358 368 3.823304 ACCAAAGCACTCATCTTTTCCTC 59.177 43.478 0.00 0.00 31.94 3.71
359 369 4.077822 CCAAAGCACTCATCTTTTCCTCT 58.922 43.478 0.00 0.00 31.94 3.69
360 370 4.155644 CCAAAGCACTCATCTTTTCCTCTC 59.844 45.833 0.00 0.00 31.94 3.20
365 375 4.512484 CACTCATCTTTTCCTCTCTTCCC 58.488 47.826 0.00 0.00 0.00 3.97
366 376 3.521531 ACTCATCTTTTCCTCTCTTCCCC 59.478 47.826 0.00 0.00 0.00 4.81
367 377 2.846827 TCATCTTTTCCTCTCTTCCCCC 59.153 50.000 0.00 0.00 0.00 5.40
368 378 2.433444 TCTTTTCCTCTCTTCCCCCA 57.567 50.000 0.00 0.00 0.00 4.96
370 380 1.004862 CTTTTCCTCTCTTCCCCCACC 59.995 57.143 0.00 0.00 0.00 4.61
371 381 0.104144 TTTCCTCTCTTCCCCCACCA 60.104 55.000 0.00 0.00 0.00 4.17
373 383 2.301738 CCTCTCTTCCCCCACCACC 61.302 68.421 0.00 0.00 0.00 4.61
374 384 2.606519 TCTCTTCCCCCACCACCG 60.607 66.667 0.00 0.00 0.00 4.94
401 411 4.820775 TCCTCTTCCTCATATTGCTAGGT 58.179 43.478 0.00 0.00 0.00 3.08
402 412 5.219739 TCCTCTTCCTCATATTGCTAGGTT 58.780 41.667 0.00 0.00 0.00 3.50
432 442 2.612251 GAGGAGGAGGAGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
438 448 2.041405 GAGGAGGAGGGGGAGGTG 60.041 72.222 0.00 0.00 0.00 4.00
448 458 2.677228 GGGAGGTGGTGGTGATGG 59.323 66.667 0.00 0.00 0.00 3.51
452 462 2.035626 GGTGGTGGTGATGGTGGG 59.964 66.667 0.00 0.00 0.00 4.61
453 463 2.676471 GTGGTGGTGATGGTGGGC 60.676 66.667 0.00 0.00 0.00 5.36
454 464 3.181530 TGGTGGTGATGGTGGGCA 61.182 61.111 0.00 0.00 0.00 5.36
479 492 2.763902 TGCTCGGACAGAGGAGGA 59.236 61.111 4.72 0.00 46.91 3.71
497 510 0.872021 GACATGGGAGATGCGTCGAC 60.872 60.000 5.18 5.18 0.00 4.20
500 513 1.663379 ATGGGAGATGCGTCGACGAA 61.663 55.000 39.74 32.25 43.02 3.85
509 522 1.131693 TGCGTCGACGAACTATGATGT 59.868 47.619 39.74 0.00 43.02 3.06
513 526 3.242316 CGTCGACGAACTATGATGTCAGA 60.242 47.826 33.35 0.00 43.02 3.27
520 533 5.527951 ACGAACTATGATGTCAGAGACGTAT 59.472 40.000 21.47 0.00 43.08 3.06
524 537 7.101652 ACTATGATGTCAGAGACGTATTTGT 57.898 36.000 11.27 0.00 37.37 2.83
539 552 2.162338 TTTGTGGAGGTCGGCGTAGG 62.162 60.000 6.85 0.00 0.00 3.18
541 554 2.439701 TGGAGGTCGGCGTAGGAG 60.440 66.667 6.85 0.00 0.00 3.69
542 555 3.217743 GGAGGTCGGCGTAGGAGG 61.218 72.222 6.85 0.00 0.00 4.30
543 556 2.124403 GAGGTCGGCGTAGGAGGA 60.124 66.667 6.85 0.00 0.00 3.71
544 557 2.124236 AGGTCGGCGTAGGAGGAG 60.124 66.667 6.85 0.00 0.00 3.69
545 558 2.124403 GGTCGGCGTAGGAGGAGA 60.124 66.667 6.85 0.00 0.00 3.71
546 559 2.479750 GGTCGGCGTAGGAGGAGAC 61.480 68.421 6.85 0.00 0.00 3.36
547 560 2.513204 TCGGCGTAGGAGGAGACG 60.513 66.667 6.85 0.00 41.97 4.18
548 561 3.584052 CGGCGTAGGAGGAGACGG 61.584 72.222 0.00 0.00 39.46 4.79
549 562 3.217743 GGCGTAGGAGGAGACGGG 61.218 72.222 0.00 0.00 39.46 5.28
550 563 3.217743 GCGTAGGAGGAGACGGGG 61.218 72.222 0.00 0.00 39.46 5.73
551 564 2.593978 CGTAGGAGGAGACGGGGA 59.406 66.667 0.00 0.00 35.43 4.81
552 565 1.077212 CGTAGGAGGAGACGGGGAA 60.077 63.158 0.00 0.00 35.43 3.97
553 566 1.102222 CGTAGGAGGAGACGGGGAAG 61.102 65.000 0.00 0.00 35.43 3.46
571 584 4.593864 GGGCGCGGAGGAGATGAC 62.594 72.222 8.83 0.00 0.00 3.06
573 586 4.593864 GCGCGGAGGAGATGACCC 62.594 72.222 8.83 0.00 0.00 4.46
575 588 2.833582 GCGGAGGAGATGACCCGA 60.834 66.667 0.00 0.00 44.29 5.14
576 589 2.423898 GCGGAGGAGATGACCCGAA 61.424 63.158 0.00 0.00 44.29 4.30
577 590 1.736586 CGGAGGAGATGACCCGAAG 59.263 63.158 0.00 0.00 44.29 3.79
578 591 0.752009 CGGAGGAGATGACCCGAAGA 60.752 60.000 0.00 0.00 44.29 2.87
598 611 3.881104 GGGGGTCGTGGTGGTGTT 61.881 66.667 0.00 0.00 0.00 3.32
600 613 2.593436 GGGTCGTGGTGGTGTTGG 60.593 66.667 0.00 0.00 0.00 3.77
601 614 2.506962 GGTCGTGGTGGTGTTGGA 59.493 61.111 0.00 0.00 0.00 3.53
602 615 1.890510 GGTCGTGGTGGTGTTGGAC 60.891 63.158 0.00 0.00 0.00 4.02
603 616 1.153329 GTCGTGGTGGTGTTGGACA 60.153 57.895 0.00 0.00 0.00 4.02
604 617 0.745128 GTCGTGGTGGTGTTGGACAA 60.745 55.000 0.00 0.00 0.00 3.18
605 618 0.745128 TCGTGGTGGTGTTGGACAAC 60.745 55.000 8.19 8.19 41.50 3.32
608 621 2.719354 GTGGTGTTGGACAACCGC 59.281 61.111 12.21 2.21 40.46 5.68
609 622 2.897846 TGGTGTTGGACAACCGCG 60.898 61.111 12.21 0.00 40.46 6.46
610 623 2.589442 GGTGTTGGACAACCGCGA 60.589 61.111 8.23 0.00 40.46 5.87
611 624 2.629763 GTGTTGGACAACCGCGAC 59.370 61.111 8.23 0.00 40.46 5.19
612 625 2.962786 TGTTGGACAACCGCGACG 60.963 61.111 8.23 0.00 40.46 5.12
613 626 2.659244 GTTGGACAACCGCGACGA 60.659 61.111 8.23 0.00 39.42 4.20
614 627 2.106534 TTGGACAACCGCGACGAA 59.893 55.556 8.23 0.00 39.42 3.85
615 628 1.952133 TTGGACAACCGCGACGAAG 60.952 57.895 8.23 0.00 39.42 3.79
616 629 2.049802 GGACAACCGCGACGAAGA 60.050 61.111 8.23 0.00 0.00 2.87
617 630 2.087009 GGACAACCGCGACGAAGAG 61.087 63.158 8.23 0.00 0.00 2.85
618 631 1.081641 GACAACCGCGACGAAGAGA 60.082 57.895 8.23 0.00 0.00 3.10
619 632 0.662374 GACAACCGCGACGAAGAGAA 60.662 55.000 8.23 0.00 0.00 2.87
620 633 0.663568 ACAACCGCGACGAAGAGAAG 60.664 55.000 8.23 0.00 0.00 2.85
621 634 1.080705 AACCGCGACGAAGAGAAGG 60.081 57.895 8.23 0.00 0.00 3.46
622 635 2.881352 CCGCGACGAAGAGAAGGC 60.881 66.667 8.23 0.00 0.00 4.35
623 636 2.126463 CGCGACGAAGAGAAGGCA 60.126 61.111 0.00 0.00 0.00 4.75
624 637 1.517257 CGCGACGAAGAGAAGGCAT 60.517 57.895 0.00 0.00 0.00 4.40
625 638 1.746727 CGCGACGAAGAGAAGGCATG 61.747 60.000 0.00 0.00 0.00 4.06
626 639 2.002127 CGACGAAGAGAAGGCATGC 58.998 57.895 9.90 9.90 0.00 4.06
627 640 1.424493 CGACGAAGAGAAGGCATGCC 61.424 60.000 30.12 30.12 0.00 4.40
654 667 4.683334 GGCGAACGGTGCTGCAAC 62.683 66.667 7.83 7.83 0.00 4.17
672 685 4.408821 GCCCACCACGCCAGATCA 62.409 66.667 0.00 0.00 0.00 2.92
673 686 2.350895 CCCACCACGCCAGATCAA 59.649 61.111 0.00 0.00 0.00 2.57
674 687 1.746615 CCCACCACGCCAGATCAAG 60.747 63.158 0.00 0.00 0.00 3.02
675 688 1.296392 CCACCACGCCAGATCAAGA 59.704 57.895 0.00 0.00 0.00 3.02
676 689 0.107508 CCACCACGCCAGATCAAGAT 60.108 55.000 0.00 0.00 0.00 2.40
677 690 1.293924 CACCACGCCAGATCAAGATC 58.706 55.000 1.81 1.81 38.09 2.75
678 691 0.179000 ACCACGCCAGATCAAGATCC 59.821 55.000 6.45 0.00 38.58 3.36
679 692 0.178767 CCACGCCAGATCAAGATCCA 59.821 55.000 6.45 0.00 38.58 3.41
680 693 1.202734 CCACGCCAGATCAAGATCCAT 60.203 52.381 6.45 0.00 38.58 3.41
681 694 1.871676 CACGCCAGATCAAGATCCATG 59.128 52.381 6.45 0.19 38.58 3.66
682 695 1.202734 ACGCCAGATCAAGATCCATGG 60.203 52.381 4.97 4.97 38.58 3.66
683 696 1.245732 GCCAGATCAAGATCCATGGC 58.754 55.000 20.61 20.61 45.57 4.40
684 697 1.906990 CCAGATCAAGATCCATGGCC 58.093 55.000 6.96 0.00 38.58 5.36
685 698 1.520494 CAGATCAAGATCCATGGCCG 58.480 55.000 6.96 0.00 38.58 6.13
686 699 0.399454 AGATCAAGATCCATGGCCGG 59.601 55.000 6.96 0.00 38.58 6.13
687 700 1.228367 ATCAAGATCCATGGCCGGC 60.228 57.895 21.18 21.18 0.00 6.13
688 701 3.282157 CAAGATCCATGGCCGGCG 61.282 66.667 22.54 6.52 0.00 6.46
689 702 4.569180 AAGATCCATGGCCGGCGG 62.569 66.667 24.35 24.35 0.00 6.13
705 718 4.741239 GGGAGGAGGCAGGGGTGA 62.741 72.222 0.00 0.00 0.00 4.02
706 719 2.367512 GGAGGAGGCAGGGGTGAT 60.368 66.667 0.00 0.00 0.00 3.06
707 720 2.750657 GGAGGAGGCAGGGGTGATG 61.751 68.421 0.00 0.00 0.00 3.07
708 721 2.693864 AGGAGGCAGGGGTGATGG 60.694 66.667 0.00 0.00 0.00 3.51
709 722 3.813724 GGAGGCAGGGGTGATGGG 61.814 72.222 0.00 0.00 0.00 4.00
710 723 4.512914 GAGGCAGGGGTGATGGGC 62.513 72.222 0.00 0.00 0.00 5.36
719 732 2.824041 GTGATGGGCCGCACGAAT 60.824 61.111 12.66 0.00 0.00 3.34
720 733 2.823593 TGATGGGCCGCACGAATG 60.824 61.111 0.00 0.00 0.00 2.67
721 734 2.513666 GATGGGCCGCACGAATGA 60.514 61.111 0.00 0.00 0.00 2.57
722 735 1.893808 GATGGGCCGCACGAATGAT 60.894 57.895 0.00 0.00 0.00 2.45
723 736 2.121564 GATGGGCCGCACGAATGATG 62.122 60.000 0.00 0.00 0.00 3.07
724 737 2.513666 GGGCCGCACGAATGATGA 60.514 61.111 0.00 0.00 0.00 2.92
725 738 2.709475 GGCCGCACGAATGATGAC 59.291 61.111 0.00 0.00 0.00 3.06
726 739 2.106074 GGCCGCACGAATGATGACA 61.106 57.895 0.00 0.00 0.00 3.58
727 740 1.349627 GCCGCACGAATGATGACAG 59.650 57.895 0.00 0.00 0.00 3.51
728 741 1.083806 GCCGCACGAATGATGACAGA 61.084 55.000 0.00 0.00 0.00 3.41
729 742 0.647410 CCGCACGAATGATGACAGAC 59.353 55.000 0.00 0.00 0.00 3.51
730 743 1.349234 CGCACGAATGATGACAGACA 58.651 50.000 0.00 0.00 0.00 3.41
731 744 1.929169 CGCACGAATGATGACAGACAT 59.071 47.619 0.00 0.00 42.47 3.06
732 745 3.115554 CGCACGAATGATGACAGACATA 58.884 45.455 0.00 0.00 39.56 2.29
733 746 3.060940 CGCACGAATGATGACAGACATAC 60.061 47.826 0.00 0.00 39.56 2.39
734 747 3.246226 GCACGAATGATGACAGACATACC 59.754 47.826 0.00 0.00 39.56 2.73
735 748 4.432712 CACGAATGATGACAGACATACCA 58.567 43.478 0.00 0.00 39.56 3.25
736 749 5.052481 CACGAATGATGACAGACATACCAT 58.948 41.667 0.00 0.00 39.56 3.55
737 750 5.176406 CACGAATGATGACAGACATACCATC 59.824 44.000 0.00 0.00 39.56 3.51
738 751 5.163416 ACGAATGATGACAGACATACCATCA 60.163 40.000 0.00 0.00 46.14 3.07
742 755 6.429521 TGATGACAGACATACCATCATCAT 57.570 37.500 10.38 0.00 46.61 2.45
743 756 6.461640 TGATGACAGACATACCATCATCATC 58.538 40.000 10.38 0.00 46.61 2.92
744 757 4.874970 TGACAGACATACCATCATCATCG 58.125 43.478 0.00 0.00 0.00 3.84
745 758 4.584325 TGACAGACATACCATCATCATCGA 59.416 41.667 0.00 0.00 0.00 3.59
746 759 4.876125 ACAGACATACCATCATCATCGAC 58.124 43.478 0.00 0.00 0.00 4.20
747 760 4.586421 ACAGACATACCATCATCATCGACT 59.414 41.667 0.00 0.00 0.00 4.18
748 761 5.159925 CAGACATACCATCATCATCGACTC 58.840 45.833 0.00 0.00 0.00 3.36
749 762 5.048154 CAGACATACCATCATCATCGACTCT 60.048 44.000 0.00 0.00 0.00 3.24
750 763 5.048154 AGACATACCATCATCATCGACTCTG 60.048 44.000 0.00 0.00 0.00 3.35
751 764 4.021632 ACATACCATCATCATCGACTCTGG 60.022 45.833 0.00 0.00 0.00 3.86
752 765 2.392662 ACCATCATCATCGACTCTGGT 58.607 47.619 0.00 0.00 0.00 4.00
753 766 2.363680 ACCATCATCATCGACTCTGGTC 59.636 50.000 0.00 0.00 38.97 4.02
754 767 2.288702 CCATCATCATCGACTCTGGTCC 60.289 54.545 0.00 0.00 39.15 4.46
755 768 2.143876 TCATCATCGACTCTGGTCCA 57.856 50.000 0.00 0.00 39.15 4.02
756 769 2.456577 TCATCATCGACTCTGGTCCAA 58.543 47.619 0.00 0.00 39.15 3.53
757 770 2.831526 TCATCATCGACTCTGGTCCAAA 59.168 45.455 0.00 0.00 39.15 3.28
758 771 3.452264 TCATCATCGACTCTGGTCCAAAT 59.548 43.478 0.00 0.00 39.15 2.32
759 772 3.981071 TCATCGACTCTGGTCCAAATT 57.019 42.857 0.00 0.00 39.15 1.82
760 773 4.286297 TCATCGACTCTGGTCCAAATTT 57.714 40.909 0.00 0.00 39.15 1.82
761 774 4.002982 TCATCGACTCTGGTCCAAATTTG 58.997 43.478 11.40 11.40 39.15 2.32
767 780 2.299867 CTCTGGTCCAAATTTGGTTGGG 59.700 50.000 31.41 20.98 46.89 4.12
771 784 2.926778 TCCAAATTTGGTTGGGCTTG 57.073 45.000 31.41 7.85 46.89 4.01
772 785 1.419387 TCCAAATTTGGTTGGGCTTGG 59.581 47.619 31.41 8.01 46.89 3.61
773 786 1.142667 CCAAATTTGGTTGGGCTTGGT 59.857 47.619 26.34 0.00 43.79 3.67
774 787 2.370189 CCAAATTTGGTTGGGCTTGGTA 59.630 45.455 26.34 0.00 43.79 3.25
775 788 3.008923 CCAAATTTGGTTGGGCTTGGTAT 59.991 43.478 26.34 0.00 43.79 2.73
776 789 4.506448 CCAAATTTGGTTGGGCTTGGTATT 60.506 41.667 26.34 0.00 43.79 1.89
777 790 4.991789 AATTTGGTTGGGCTTGGTATTT 57.008 36.364 0.00 0.00 0.00 1.40
778 791 3.760580 TTTGGTTGGGCTTGGTATTTG 57.239 42.857 0.00 0.00 0.00 2.32
779 792 2.390225 TGGTTGGGCTTGGTATTTGT 57.610 45.000 0.00 0.00 0.00 2.83
780 793 2.683768 TGGTTGGGCTTGGTATTTGTT 58.316 42.857 0.00 0.00 0.00 2.83
781 794 3.041946 TGGTTGGGCTTGGTATTTGTTT 58.958 40.909 0.00 0.00 0.00 2.83
782 795 3.456277 TGGTTGGGCTTGGTATTTGTTTT 59.544 39.130 0.00 0.00 0.00 2.43
783 796 4.062293 GGTTGGGCTTGGTATTTGTTTTC 58.938 43.478 0.00 0.00 0.00 2.29
784 797 4.443598 GGTTGGGCTTGGTATTTGTTTTCA 60.444 41.667 0.00 0.00 0.00 2.69
790 803 6.153756 GGCTTGGTATTTGTTTTCATTACGT 58.846 36.000 0.00 0.00 0.00 3.57
827 840 4.033776 CGTGGTGGTGCCCCATCT 62.034 66.667 0.00 0.00 42.87 2.90
829 842 2.204136 TGGTGGTGCCCCATCTCT 60.204 61.111 0.00 0.00 42.87 3.10
836 849 2.091885 TGGTGCCCCATCTCTAAAATCC 60.092 50.000 0.00 0.00 35.17 3.01
840 853 2.986728 GCCCCATCTCTAAAATCCCCTA 59.013 50.000 0.00 0.00 0.00 3.53
841 854 3.397955 GCCCCATCTCTAAAATCCCCTAA 59.602 47.826 0.00 0.00 0.00 2.69
842 855 4.141018 GCCCCATCTCTAAAATCCCCTAAA 60.141 45.833 0.00 0.00 0.00 1.85
843 856 5.636252 GCCCCATCTCTAAAATCCCCTAAAA 60.636 44.000 0.00 0.00 0.00 1.52
844 857 6.440354 CCCCATCTCTAAAATCCCCTAAAAA 58.560 40.000 0.00 0.00 0.00 1.94
1218 1259 2.192861 CAAGCACGTCCAGGCCAAA 61.193 57.895 5.01 0.00 0.00 3.28
1321 1392 0.313043 GTTCGTCAAGGTCGACCAGA 59.687 55.000 35.00 27.71 38.89 3.86
1352 1423 2.693591 TCGACCTCATCCTGGTATGAAC 59.306 50.000 9.19 4.95 38.03 3.18
1377 1475 1.411651 CCCTCGATCCCCCTTCCTTC 61.412 65.000 0.00 0.00 0.00 3.46
1379 1477 1.384082 TCGATCCCCCTTCCTTCCC 60.384 63.158 0.00 0.00 0.00 3.97
1381 1479 2.046335 ATCCCCCTTCCTTCCCCC 59.954 66.667 0.00 0.00 0.00 5.40
1390 1488 2.360854 CCTTCCTTCCCCCAGATCTACT 60.361 54.545 0.00 0.00 0.00 2.57
1393 1491 2.592512 TCCTTCCCCCAGATCTACTCTT 59.407 50.000 0.00 0.00 29.16 2.85
1400 1503 4.518249 CCCCAGATCTACTCTTTGTTTCC 58.482 47.826 0.00 0.00 29.16 3.13
1417 1520 0.329261 TCCTGATGCTGTTCCCCTTG 59.671 55.000 0.00 0.00 0.00 3.61
1418 1521 0.329261 CCTGATGCTGTTCCCCTTGA 59.671 55.000 0.00 0.00 0.00 3.02
1419 1522 1.272092 CCTGATGCTGTTCCCCTTGAA 60.272 52.381 0.00 0.00 0.00 2.69
1452 1568 3.426568 GCCCGTCTTGCTGCTGTC 61.427 66.667 0.00 0.00 0.00 3.51
1473 1589 0.541863 AGATTAGGTTGGACGGGCTG 59.458 55.000 0.00 0.00 0.00 4.85
1525 1641 3.203716 GAGCGGATTAGGTTAGGGTTTG 58.796 50.000 0.00 0.00 0.00 2.93
1529 1645 3.315191 CGGATTAGGTTAGGGTTTGCATG 59.685 47.826 0.00 0.00 0.00 4.06
1530 1646 4.532834 GGATTAGGTTAGGGTTTGCATGA 58.467 43.478 0.00 0.00 0.00 3.07
1531 1647 5.140454 GGATTAGGTTAGGGTTTGCATGAT 58.860 41.667 0.00 0.00 0.00 2.45
1534 1650 3.099141 AGGTTAGGGTTTGCATGATTGG 58.901 45.455 0.00 0.00 0.00 3.16
1535 1651 2.418609 GGTTAGGGTTTGCATGATTGGC 60.419 50.000 0.00 0.00 0.00 4.52
1536 1652 1.484038 TAGGGTTTGCATGATTGGCC 58.516 50.000 0.00 0.00 0.00 5.36
1537 1653 1.221566 GGGTTTGCATGATTGGCCC 59.778 57.895 0.00 0.00 0.00 5.80
1615 1824 3.449918 TCCATGATCTTGTGGTCTGGTA 58.550 45.455 7.73 0.00 36.84 3.25
1621 1830 3.334583 TCTTGTGGTCTGGTATGCTTC 57.665 47.619 0.00 0.00 0.00 3.86
1630 1839 5.163447 TGGTCTGGTATGCTTCACTGTATAC 60.163 44.000 0.00 0.00 35.66 1.47
1631 1840 5.163447 GGTCTGGTATGCTTCACTGTATACA 60.163 44.000 5.25 5.25 37.29 2.29
1632 1841 6.338146 GTCTGGTATGCTTCACTGTATACAA 58.662 40.000 7.06 0.00 37.29 2.41
1633 1842 6.986817 GTCTGGTATGCTTCACTGTATACAAT 59.013 38.462 7.06 0.00 37.29 2.71
1634 1843 7.495934 GTCTGGTATGCTTCACTGTATACAATT 59.504 37.037 7.06 0.00 37.29 2.32
1635 1844 7.495606 TCTGGTATGCTTCACTGTATACAATTG 59.504 37.037 7.06 3.24 37.29 2.32
1636 1845 7.109501 TGGTATGCTTCACTGTATACAATTGT 58.890 34.615 16.68 16.68 37.29 2.71
1637 1846 7.609918 TGGTATGCTTCACTGTATACAATTGTT 59.390 33.333 17.78 7.40 37.29 2.83
1638 1847 7.910162 GGTATGCTTCACTGTATACAATTGTTG 59.090 37.037 17.78 7.88 37.29 3.33
1640 1849 7.270757 TGCTTCACTGTATACAATTGTTGTT 57.729 32.000 17.78 5.08 42.22 2.83
1641 1850 7.138081 TGCTTCACTGTATACAATTGTTGTTG 58.862 34.615 17.78 6.58 42.22 3.33
1643 1852 7.647715 GCTTCACTGTATACAATTGTTGTTGTT 59.352 33.333 17.78 0.00 42.22 2.83
1657 1866 6.425577 TGTTGTTGTTAGTAACCTGTGAAC 57.574 37.500 10.51 8.11 0.00 3.18
1683 1917 3.627123 CGATTGTCATCCATGCCAACTTA 59.373 43.478 0.00 0.00 27.63 2.24
1767 2008 5.359292 TGTGATCAACTTGTGGAAACATCAA 59.641 36.000 0.00 0.00 46.14 2.57
1768 2009 6.127507 TGTGATCAACTTGTGGAAACATCAAA 60.128 34.615 0.00 0.00 46.14 2.69
1778 2019 4.566360 GTGGAAACATCAAAAACACACAGG 59.434 41.667 0.00 0.00 46.14 4.00
1851 2115 5.941733 TGTGCTTTTTACATAGTGATGCTG 58.058 37.500 0.00 0.00 36.43 4.41
1881 2145 8.791355 ACACAATTAAACTATTGTTTCGAACC 57.209 30.769 8.57 0.00 44.18 3.62
1885 2149 8.424731 CAATTAAACTATTGTTTCGAACCTTGC 58.575 33.333 8.57 0.00 44.35 4.01
1896 2169 1.399440 CGAACCTTGCATCCATGTCTG 59.601 52.381 0.00 0.00 0.00 3.51
1904 2177 5.413833 CCTTGCATCCATGTCTGTATTATCC 59.586 44.000 0.00 0.00 0.00 2.59
1924 2197 3.815962 TCCTGTCTAATCTTCTCGATCCG 59.184 47.826 0.00 0.00 0.00 4.18
1955 2228 3.005897 TGCCTTCTTCTATCTATCACGGC 59.994 47.826 0.00 0.00 0.00 5.68
1965 2238 1.202568 TCTATCACGGCTGCCTGATTG 60.203 52.381 26.99 24.86 0.00 2.67
1972 2254 1.582968 GCTGCCTGATTGTGGTGTG 59.417 57.895 0.00 0.00 0.00 3.82
1978 2260 1.089920 CTGATTGTGGTGTGCTAGCC 58.910 55.000 13.29 4.15 0.00 3.93
2036 2320 3.192001 CACATTATGCCTGTTCTTGTGCT 59.808 43.478 0.00 0.00 0.00 4.40
2037 2321 3.828451 ACATTATGCCTGTTCTTGTGCTT 59.172 39.130 0.00 0.00 0.00 3.91
2038 2322 3.921119 TTATGCCTGTTCTTGTGCTTG 57.079 42.857 0.00 0.00 0.00 4.01
2046 2330 2.813754 TGTTCTTGTGCTTGGTGATAGC 59.186 45.455 0.00 0.00 39.10 2.97
2048 2332 3.423539 TCTTGTGCTTGGTGATAGCTT 57.576 42.857 0.00 0.00 39.38 3.74
2049 2333 3.754965 TCTTGTGCTTGGTGATAGCTTT 58.245 40.909 0.00 0.00 39.38 3.51
2050 2334 4.144297 TCTTGTGCTTGGTGATAGCTTTT 58.856 39.130 0.00 0.00 39.38 2.27
2051 2335 4.216257 TCTTGTGCTTGGTGATAGCTTTTC 59.784 41.667 0.00 0.00 39.38 2.29
2052 2336 2.819608 TGTGCTTGGTGATAGCTTTTCC 59.180 45.455 0.00 0.00 39.38 3.13
2053 2337 2.083774 TGCTTGGTGATAGCTTTTCCG 58.916 47.619 0.00 0.00 39.38 4.30
2054 2338 1.202188 GCTTGGTGATAGCTTTTCCGC 60.202 52.381 0.00 0.00 35.74 5.54
2070 2377 1.402968 TCCGCGGTGTTCAGTAGTATC 59.597 52.381 27.15 0.00 0.00 2.24
2074 2381 2.717530 CGGTGTTCAGTAGTATCGCTC 58.282 52.381 0.00 0.00 0.00 5.03
2077 2384 3.489398 GGTGTTCAGTAGTATCGCTCTGG 60.489 52.174 0.00 0.00 0.00 3.86
2090 2397 2.354510 TCGCTCTGGACTTGTTTTGTTG 59.645 45.455 0.00 0.00 0.00 3.33
2091 2398 2.097466 CGCTCTGGACTTGTTTTGTTGT 59.903 45.455 0.00 0.00 0.00 3.32
2093 2400 4.201871 CGCTCTGGACTTGTTTTGTTGTTA 60.202 41.667 0.00 0.00 0.00 2.41
2094 2401 5.034797 GCTCTGGACTTGTTTTGTTGTTAC 58.965 41.667 0.00 0.00 0.00 2.50
2095 2402 5.163652 GCTCTGGACTTGTTTTGTTGTTACT 60.164 40.000 0.00 0.00 0.00 2.24
2096 2403 6.189677 TCTGGACTTGTTTTGTTGTTACTG 57.810 37.500 0.00 0.00 0.00 2.74
2097 2404 4.739195 TGGACTTGTTTTGTTGTTACTGC 58.261 39.130 0.00 0.00 0.00 4.40
2123 2437 9.838339 CTATGTTGTTTCATTCTAGATAGGGTT 57.162 33.333 0.00 0.00 0.00 4.11
2175 2489 5.490139 AATCCAAAATCATACACTGCTCG 57.510 39.130 0.00 0.00 0.00 5.03
2178 2492 1.290203 AAATCATACACTGCTCGCCG 58.710 50.000 0.00 0.00 0.00 6.46
2198 2512 2.286872 GCTGATCCCATGTTCTGTCTG 58.713 52.381 0.00 0.00 0.00 3.51
2204 2518 1.457346 CCATGTTCTGTCTGGCTTCC 58.543 55.000 0.00 0.00 0.00 3.46
2207 2521 1.140312 TGTTCTGTCTGGCTTCCCTT 58.860 50.000 0.00 0.00 0.00 3.95
2233 2549 4.802563 CCATACATAGTGATAGCTGATGCG 59.197 45.833 0.00 0.00 45.42 4.73
2245 2561 0.723414 CTGATGCGTACAGTTGCCAG 59.277 55.000 0.00 0.00 0.00 4.85
2294 2615 3.129113 TCTGAACCCATGCATGAATTTCG 59.871 43.478 28.31 18.68 0.00 3.46
2307 2628 8.768957 TGCATGAATTTCGAAAATTTATCCAA 57.231 26.923 15.66 0.00 0.00 3.53
2308 2629 9.381033 TGCATGAATTTCGAAAATTTATCCAAT 57.619 25.926 15.66 0.00 0.00 3.16
2309 2630 9.853921 GCATGAATTTCGAAAATTTATCCAATC 57.146 29.630 15.66 2.13 0.00 2.67
2361 2683 3.882888 AGTAGTATCAGCTCTGACTCTGC 59.117 47.826 1.15 7.26 43.11 4.26
2402 2760 9.185192 GTTATTTTCTTTTGACTGTGGATCTTG 57.815 33.333 0.00 0.00 0.00 3.02
2404 2762 7.587037 TTTTCTTTTGACTGTGGATCTTGAT 57.413 32.000 0.00 0.00 0.00 2.57
2417 2775 3.137176 GGATCTTGATCCATGTTCTGGGA 59.863 47.826 21.11 0.00 45.98 4.37
2431 2789 7.040201 CCATGTTCTGGGATTTGAATCGATATT 60.040 37.037 0.00 0.00 41.82 1.28
2461 2820 1.130955 CGCATGCCTTGTTTTGTGTC 58.869 50.000 13.15 0.00 0.00 3.67
2463 2822 2.799207 CGCATGCCTTGTTTTGTGTCTT 60.799 45.455 13.15 0.00 0.00 3.01
2484 2843 4.838665 TTTTTCTCTTGCTGCAAAAACG 57.161 36.364 16.74 4.79 0.00 3.60
2565 2925 1.202348 ACGCTGCTATTCTTTTTGCCC 59.798 47.619 0.00 0.00 0.00 5.36
2633 2994 2.262915 GACCTGACCTGCCAGACG 59.737 66.667 0.00 0.00 36.29 4.18
2773 3134 4.018324 TGAGTAGAGGCCTTTGAGTAGAGA 60.018 45.833 6.77 0.00 0.00 3.10
2774 3135 5.137412 AGTAGAGGCCTTTGAGTAGAGAT 57.863 43.478 6.77 0.00 0.00 2.75
2834 3206 2.798680 AGTATTCGTCATGTCTGCGTC 58.201 47.619 0.00 0.00 0.00 5.19
2849 3221 3.969795 CGTCTTAGCGCCCTTTTTC 57.030 52.632 2.29 0.00 0.00 2.29
2891 3272 1.891060 GAACAGCCGCTCGTGTGAAG 61.891 60.000 0.00 0.00 0.00 3.02
2902 3283 1.456287 GTGTGAAGCCCTGACCCTT 59.544 57.895 0.00 0.00 0.00 3.95
2904 3285 0.178992 TGTGAAGCCCTGACCCTTTG 60.179 55.000 0.00 0.00 0.00 2.77
2929 3311 1.396996 GTCTGTCGTTGTTTGCTGTGT 59.603 47.619 0.00 0.00 0.00 3.72
3035 5728 1.443407 GCGGCAGATGAAGAGGCTA 59.557 57.895 0.00 0.00 0.00 3.93
3051 5798 2.020131 CTAGCGCCCTTTGCTCATG 58.980 57.895 2.29 0.00 42.85 3.07
3083 5830 1.003442 TGCTGCCCCAGTAGGAGAT 59.997 57.895 0.00 0.00 38.24 2.75
3096 5843 1.602237 GGAGATGCGGAACTCCCAA 59.398 57.895 20.67 0.00 44.70 4.12
3127 5874 2.664851 CGCTGCCGTCCTTGAACA 60.665 61.111 0.00 0.00 0.00 3.18
3128 5875 2.250939 CGCTGCCGTCCTTGAACAA 61.251 57.895 0.00 0.00 0.00 2.83
3129 5876 1.576421 GCTGCCGTCCTTGAACAAG 59.424 57.895 7.49 7.49 38.14 3.16
3137 5884 3.253955 CTTGAACAAGGACGGCGG 58.746 61.111 13.24 0.00 34.87 6.13
3138 5885 2.966309 CTTGAACAAGGACGGCGGC 61.966 63.158 13.24 8.60 34.87 6.53
3139 5886 3.758973 TTGAACAAGGACGGCGGCA 62.759 57.895 17.61 0.00 0.00 5.69
3154 5942 1.302192 GGCACCGGCAGTTAGTTCA 60.302 57.895 0.00 0.00 43.71 3.18
3157 5945 1.003718 ACCGGCAGTTAGTTCAGCC 60.004 57.895 0.00 0.00 43.61 4.85
3162 5950 1.807142 GGCAGTTAGTTCAGCCAAGTC 59.193 52.381 0.00 0.00 46.26 3.01
3174 5962 3.909662 CAAGTCCTTGGGCATCGG 58.090 61.111 0.00 0.00 36.95 4.18
3175 5963 1.002134 CAAGTCCTTGGGCATCGGT 60.002 57.895 0.00 0.00 36.95 4.69
3176 5964 0.609131 CAAGTCCTTGGGCATCGGTT 60.609 55.000 0.00 0.00 36.95 4.44
3177 5965 0.112412 AAGTCCTTGGGCATCGGTTT 59.888 50.000 0.00 0.00 0.00 3.27
3178 5966 0.609131 AGTCCTTGGGCATCGGTTTG 60.609 55.000 0.00 0.00 0.00 2.93
3179 5967 0.608035 GTCCTTGGGCATCGGTTTGA 60.608 55.000 0.00 0.00 0.00 2.69
3180 5968 0.331278 TCCTTGGGCATCGGTTTGAT 59.669 50.000 0.00 0.00 38.01 2.57
3181 5969 1.185315 CCTTGGGCATCGGTTTGATT 58.815 50.000 0.00 0.00 34.13 2.57
3208 6105 5.542779 AGATTCTAATCCCAATCGTGCTAC 58.457 41.667 0.00 0.00 36.04 3.58
3229 6206 3.247648 ACGAATTATCCTGCATGCGTTAC 59.752 43.478 14.09 0.00 0.00 2.50
3233 6210 1.668419 ATCCTGCATGCGTTACCTTC 58.332 50.000 14.09 0.00 0.00 3.46
3235 6212 0.392998 CCTGCATGCGTTACCTTCCT 60.393 55.000 14.09 0.00 0.00 3.36
3237 6214 1.131126 CTGCATGCGTTACCTTCCTTG 59.869 52.381 14.09 0.00 0.00 3.61
3239 6216 1.453155 CATGCGTTACCTTCCTTGCT 58.547 50.000 0.00 0.00 0.00 3.91
3241 6218 1.234821 TGCGTTACCTTCCTTGCTTG 58.765 50.000 0.00 0.00 0.00 4.01
3243 6220 1.892209 CGTTACCTTCCTTGCTTGGT 58.108 50.000 0.00 0.00 36.66 3.67
3244 6221 2.872842 GCGTTACCTTCCTTGCTTGGTA 60.873 50.000 0.00 0.00 34.33 3.25
3245 6222 2.740447 CGTTACCTTCCTTGCTTGGTAC 59.260 50.000 0.00 0.00 35.12 3.34
3246 6223 3.556423 CGTTACCTTCCTTGCTTGGTACT 60.556 47.826 0.00 0.00 35.12 2.73
3302 6297 8.618702 ATCTTTCTGATCATTGGACATATGTC 57.381 34.615 24.95 24.95 44.04 3.06
3303 6298 7.799081 TCTTTCTGATCATTGGACATATGTCT 58.201 34.615 29.87 13.31 44.20 3.41
3304 6299 8.927411 TCTTTCTGATCATTGGACATATGTCTA 58.073 33.333 29.87 24.02 44.20 2.59
3314 6309 3.181455 GGACATATGTCTACATGCACCCA 60.181 47.826 29.87 0.00 44.20 4.51
3319 6314 6.881065 ACATATGTCTACATGCACCCATATTC 59.119 38.462 1.41 0.00 37.15 1.75
3329 6324 2.168106 GCACCCATATTCATTGTTGCCA 59.832 45.455 0.00 0.00 0.00 4.92
3347 6342 5.058149 TGCCATATGTTTGTGTGATGTTC 57.942 39.130 1.24 0.00 0.00 3.18
3348 6343 4.766373 TGCCATATGTTTGTGTGATGTTCT 59.234 37.500 1.24 0.00 0.00 3.01
3349 6344 5.097529 GCCATATGTTTGTGTGATGTTCTG 58.902 41.667 1.24 0.00 0.00 3.02
3378 6373 3.006430 TCGAAAGATGCACACAACCTCTA 59.994 43.478 0.00 0.00 33.31 2.43
3379 6374 3.123621 CGAAAGATGCACACAACCTCTAC 59.876 47.826 0.00 0.00 0.00 2.59
3384 6379 1.616374 TGCACACAACCTCTACATCGA 59.384 47.619 0.00 0.00 0.00 3.59
3400 6395 2.093306 TCGATTGATGCACGAAACCT 57.907 45.000 0.00 0.00 33.20 3.50
3445 6440 4.893424 ACCGCGCTTAAATTCATGTTAT 57.107 36.364 5.56 0.00 0.00 1.89
3447 6442 6.366315 ACCGCGCTTAAATTCATGTTATTA 57.634 33.333 5.56 0.00 0.00 0.98
3448 6443 6.787225 ACCGCGCTTAAATTCATGTTATTAA 58.213 32.000 5.56 0.00 0.00 1.40
3449 6444 7.422399 ACCGCGCTTAAATTCATGTTATTAAT 58.578 30.769 5.56 0.00 0.00 1.40
3450 6445 7.918562 ACCGCGCTTAAATTCATGTTATTAATT 59.081 29.630 5.56 0.00 0.00 1.40
3451 6446 9.388346 CCGCGCTTAAATTCATGTTATTAATTA 57.612 29.630 5.56 0.00 0.00 1.40
3474 6469 0.524862 GGAAGCAGGTGCATGTGAAG 59.475 55.000 4.48 0.00 45.16 3.02
3485 6480 1.452651 ATGTGAAGCCATGGAGCGG 60.453 57.895 18.40 0.00 38.01 5.52
3512 6507 8.153550 AGAGTGTGACTAATTGAGTTTCAATCT 58.846 33.333 4.90 4.68 45.57 2.40
3513 6508 9.424319 GAGTGTGACTAATTGAGTTTCAATCTA 57.576 33.333 4.90 1.07 45.57 1.98
3514 6509 9.209175 AGTGTGACTAATTGAGTTTCAATCTAC 57.791 33.333 4.90 2.44 45.57 2.59
3515 6510 8.162880 GTGTGACTAATTGAGTTTCAATCTACG 58.837 37.037 4.90 0.00 45.57 3.51
3516 6511 7.330946 TGTGACTAATTGAGTTTCAATCTACGG 59.669 37.037 4.90 0.00 45.57 4.02
3517 6512 7.544566 GTGACTAATTGAGTTTCAATCTACGGA 59.455 37.037 4.90 0.00 45.57 4.69
3518 6513 7.759886 TGACTAATTGAGTTTCAATCTACGGAG 59.240 37.037 4.90 0.00 45.57 4.63
3519 6514 7.612677 ACTAATTGAGTTTCAATCTACGGAGT 58.387 34.615 4.90 1.21 45.57 3.85
3520 6515 8.746530 ACTAATTGAGTTTCAATCTACGGAGTA 58.253 33.333 4.90 0.00 45.57 2.59
3600 10333 5.710099 TGGTAGAGATTGGTGAAAATCCAAC 59.290 40.000 0.00 0.00 45.84 3.77
3625 10358 3.821033 ACAAGTCTTGGTCATGCTAAACC 59.179 43.478 16.85 0.00 36.03 3.27
3655 10388 1.063649 CCATCAATGCGACAGCTGC 59.936 57.895 15.27 5.81 45.42 5.25
3656 10389 1.374343 CCATCAATGCGACAGCTGCT 61.374 55.000 15.27 0.00 45.42 4.24
3660 10393 0.450583 CAATGCGACAGCTGCTCATT 59.549 50.000 15.27 16.79 45.42 2.57
3706 10482 8.700644 CACGTACTAGATGTGAATAATTAAGGC 58.299 37.037 0.00 0.00 46.53 4.35
3708 10484 9.477484 CGTACTAGATGTGAATAATTAAGGCTT 57.523 33.333 4.58 4.58 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.814954 ACATAGACATACATCTCTTGGGTT 57.185 37.500 0.00 0.00 0.00 4.11
3 4 6.814954 AACATAGACATACATCTCTTGGGT 57.185 37.500 0.00 0.00 0.00 4.51
4 5 7.726216 TGTAACATAGACATACATCTCTTGGG 58.274 38.462 0.00 0.00 0.00 4.12
5 6 9.035607 GTTGTAACATAGACATACATCTCTTGG 57.964 37.037 0.00 0.00 30.29 3.61
6 7 8.746751 CGTTGTAACATAGACATACATCTCTTG 58.253 37.037 0.00 0.00 30.29 3.02
7 8 7.435488 GCGTTGTAACATAGACATACATCTCTT 59.565 37.037 0.00 0.00 30.29 2.85
8 9 6.918569 GCGTTGTAACATAGACATACATCTCT 59.081 38.462 0.00 0.00 30.29 3.10
9 10 6.695713 TGCGTTGTAACATAGACATACATCTC 59.304 38.462 0.00 0.00 30.29 2.75
21 22 1.384525 GGCCCATGCGTTGTAACATA 58.615 50.000 0.00 0.00 38.85 2.29
26 27 1.377987 GAAGGGCCCATGCGTTGTA 60.378 57.895 27.56 0.00 38.85 2.41
28 29 0.466189 ATAGAAGGGCCCATGCGTTG 60.466 55.000 27.56 0.00 38.85 4.10
35 36 2.916934 ACAACACTAATAGAAGGGCCCA 59.083 45.455 27.56 2.25 0.00 5.36
37 38 4.216411 TGACAACACTAATAGAAGGGCC 57.784 45.455 0.00 0.00 0.00 5.80
39 40 9.099454 GATAAGTTGACAACACTAATAGAAGGG 57.901 37.037 20.08 0.00 0.00 3.95
55 56 8.547967 TGAAGAAGGTTGTATGATAAGTTGAC 57.452 34.615 0.00 0.00 0.00 3.18
59 60 8.321353 TGTGATGAAGAAGGTTGTATGATAAGT 58.679 33.333 0.00 0.00 0.00 2.24
60 61 8.722480 TGTGATGAAGAAGGTTGTATGATAAG 57.278 34.615 0.00 0.00 0.00 1.73
63 64 9.685276 TTTATGTGATGAAGAAGGTTGTATGAT 57.315 29.630 0.00 0.00 0.00 2.45
64 65 8.946085 GTTTATGTGATGAAGAAGGTTGTATGA 58.054 33.333 0.00 0.00 0.00 2.15
65 66 8.950210 AGTTTATGTGATGAAGAAGGTTGTATG 58.050 33.333 0.00 0.00 0.00 2.39
100 101 7.094248 TGAGCAATAAAGTTTGTCATATGCACT 60.094 33.333 8.77 0.00 0.00 4.40
143 144 8.919145 TGGGATATTGTTATATTTGTGGTTTCC 58.081 33.333 0.00 0.00 0.00 3.13
164 165 9.258629 TCATTGATGAAAGTTAAATCTTGGGAT 57.741 29.630 0.00 0.00 33.08 3.85
166 167 9.880157 AATCATTGATGAAAGTTAAATCTTGGG 57.120 29.630 0.00 0.00 40.69 4.12
182 183 9.605275 ACCGTATAGATGGATTAATCATTGATG 57.395 33.333 17.07 1.65 35.46 3.07
188 189 7.547697 TTGGACCGTATAGATGGATTAATCA 57.452 36.000 17.07 4.18 35.46 2.57
190 191 8.826765 AGATTTGGACCGTATAGATGGATTAAT 58.173 33.333 1.72 0.00 35.46 1.40
208 209 9.104965 ACGAATAATTACGAAATCAGATTTGGA 57.895 29.630 21.14 5.72 33.04 3.53
234 235 1.048601 ACCTCACAAAGAAGCGGAGA 58.951 50.000 0.00 0.00 0.00 3.71
236 237 1.336517 CGTACCTCACAAAGAAGCGGA 60.337 52.381 0.00 0.00 0.00 5.54
237 238 1.068474 CGTACCTCACAAAGAAGCGG 58.932 55.000 0.00 0.00 0.00 5.52
244 245 7.833786 ACAAATAGAGTATCGTACCTCACAAA 58.166 34.615 0.60 0.00 42.67 2.83
247 248 6.039047 TGGACAAATAGAGTATCGTACCTCAC 59.961 42.308 0.60 0.00 42.67 3.51
251 252 5.210715 CGTGGACAAATAGAGTATCGTACC 58.789 45.833 0.00 0.00 42.67 3.34
265 266 0.965866 TTGGGCAACACGTGGACAAA 60.966 50.000 21.57 1.38 39.74 2.83
266 267 1.378646 TTGGGCAACACGTGGACAA 60.379 52.632 21.57 13.49 39.74 3.18
267 268 2.115911 GTTGGGCAACACGTGGACA 61.116 57.895 21.57 8.08 40.84 4.02
268 269 2.719354 GTTGGGCAACACGTGGAC 59.281 61.111 21.57 4.59 40.84 4.02
269 270 2.517402 GGTTGGGCAACACGTGGA 60.517 61.111 21.57 0.00 42.85 4.02
285 286 2.719705 TGGGGTATTTATTAGGGGCAGG 59.280 50.000 0.00 0.00 0.00 4.85
287 288 3.117054 GGTTGGGGTATTTATTAGGGGCA 60.117 47.826 0.00 0.00 0.00 5.36
288 289 3.503365 GGTTGGGGTATTTATTAGGGGC 58.497 50.000 0.00 0.00 0.00 5.80
301 302 4.585216 TCAGGGTCGGGTTGGGGT 62.585 66.667 0.00 0.00 0.00 4.95
315 317 0.251742 TTGGATGGGTTGGGCTTCAG 60.252 55.000 0.00 0.00 0.00 3.02
316 318 0.541764 GTTGGATGGGTTGGGCTTCA 60.542 55.000 0.00 0.00 0.00 3.02
334 344 3.319122 GGAAAAGATGAGTGCTTTGGTGT 59.681 43.478 0.00 0.00 35.86 4.16
337 347 4.077822 AGAGGAAAAGATGAGTGCTTTGG 58.922 43.478 0.00 0.00 35.86 3.28
346 356 2.846827 GGGGGAAGAGAGGAAAAGATGA 59.153 50.000 0.00 0.00 0.00 2.92
354 364 1.229529 GTGGTGGGGGAAGAGAGGA 60.230 63.158 0.00 0.00 0.00 3.71
356 366 2.660064 CGGTGGTGGGGGAAGAGAG 61.660 68.421 0.00 0.00 0.00 3.20
357 367 2.606519 CGGTGGTGGGGGAAGAGA 60.607 66.667 0.00 0.00 0.00 3.10
358 368 4.410400 GCGGTGGTGGGGGAAGAG 62.410 72.222 0.00 0.00 0.00 2.85
365 375 4.636435 AGGAAACGCGGTGGTGGG 62.636 66.667 12.47 0.00 0.00 4.61
366 376 3.047877 GAGGAAACGCGGTGGTGG 61.048 66.667 12.47 0.00 0.00 4.61
367 377 1.566018 GAAGAGGAAACGCGGTGGTG 61.566 60.000 12.47 0.00 34.13 4.17
368 378 1.301479 GAAGAGGAAACGCGGTGGT 60.301 57.895 12.47 0.00 34.13 4.16
370 380 1.004918 AGGAAGAGGAAACGCGGTG 60.005 57.895 12.47 0.00 34.13 4.94
371 381 1.292541 GAGGAAGAGGAAACGCGGT 59.707 57.895 12.47 0.00 34.13 5.68
373 383 2.579207 TATGAGGAAGAGGAAACGCG 57.421 50.000 3.53 3.53 34.13 6.01
374 384 3.002759 GCAATATGAGGAAGAGGAAACGC 59.997 47.826 0.00 0.00 0.00 4.84
376 386 5.994668 CCTAGCAATATGAGGAAGAGGAAAC 59.005 44.000 0.00 0.00 31.45 2.78
401 411 2.903784 TCCTCCTCGATGACAGGAAAAA 59.096 45.455 0.00 0.00 39.69 1.94
402 412 2.497675 CTCCTCCTCGATGACAGGAAAA 59.502 50.000 1.37 0.00 39.69 2.29
408 418 0.106469 CCTCCTCCTCCTCGATGACA 60.106 60.000 0.00 0.00 0.00 3.58
410 420 0.476338 CTCCTCCTCCTCCTCGATGA 59.524 60.000 0.00 0.00 0.00 2.92
412 422 1.725169 CCCTCCTCCTCCTCCTCGAT 61.725 65.000 0.00 0.00 0.00 3.59
413 423 2.387772 CCCTCCTCCTCCTCCTCGA 61.388 68.421 0.00 0.00 0.00 4.04
416 426 3.039526 CCCCCTCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
417 427 3.036959 TCCCCCTCCTCCTCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
432 442 1.002134 CACCATCACCACCACCTCC 60.002 63.158 0.00 0.00 0.00 4.30
438 448 2.361610 CTGCCCACCATCACCACC 60.362 66.667 0.00 0.00 0.00 4.61
454 464 2.203640 TGTCCGAGCAGTCCCACT 60.204 61.111 0.00 0.00 0.00 4.00
479 492 1.141881 GTCGACGCATCTCCCATGT 59.858 57.895 0.00 0.00 0.00 3.21
497 510 4.280101 ACGTCTCTGACATCATAGTTCG 57.720 45.455 0.00 10.35 32.09 3.95
500 513 6.975197 CACAAATACGTCTCTGACATCATAGT 59.025 38.462 0.00 0.00 32.09 2.12
509 522 3.162666 ACCTCCACAAATACGTCTCTGA 58.837 45.455 0.00 0.00 0.00 3.27
513 526 1.203994 CCGACCTCCACAAATACGTCT 59.796 52.381 0.00 0.00 0.00 4.18
520 533 1.290955 CTACGCCGACCTCCACAAA 59.709 57.895 0.00 0.00 0.00 2.83
524 537 2.439701 CTCCTACGCCGACCTCCA 60.440 66.667 0.00 0.00 0.00 3.86
539 552 2.764547 CCCCTTCCCCGTCTCCTC 60.765 72.222 0.00 0.00 0.00 3.71
558 571 2.356818 CTTCGGGTCATCTCCTCCGC 62.357 65.000 0.00 0.00 41.98 5.54
583 596 2.593436 CCAACACCACCACGACCC 60.593 66.667 0.00 0.00 0.00 4.46
585 598 0.745128 TTGTCCAACACCACCACGAC 60.745 55.000 0.00 0.00 0.00 4.34
586 599 0.745128 GTTGTCCAACACCACCACGA 60.745 55.000 5.32 0.00 40.84 4.35
587 600 1.720694 GGTTGTCCAACACCACCACG 61.721 60.000 11.89 0.00 40.09 4.94
591 604 2.719354 GCGGTTGTCCAACACCAC 59.281 61.111 11.89 0.00 42.85 4.16
592 605 2.897846 CGCGGTTGTCCAACACCA 60.898 61.111 11.89 0.00 42.85 4.17
593 606 2.589442 TCGCGGTTGTCCAACACC 60.589 61.111 6.13 1.76 42.85 4.16
594 607 2.629763 GTCGCGGTTGTCCAACAC 59.370 61.111 6.13 3.03 42.85 3.32
595 608 2.902759 TTCGTCGCGGTTGTCCAACA 62.903 55.000 6.13 0.00 42.85 3.33
596 609 2.154427 CTTCGTCGCGGTTGTCCAAC 62.154 60.000 6.13 1.49 40.45 3.77
598 611 2.355363 CTTCGTCGCGGTTGTCCA 60.355 61.111 6.13 0.00 0.00 4.02
600 613 0.662374 TTCTCTTCGTCGCGGTTGTC 60.662 55.000 6.13 0.00 0.00 3.18
601 614 0.663568 CTTCTCTTCGTCGCGGTTGT 60.664 55.000 6.13 0.00 0.00 3.32
602 615 1.344942 CCTTCTCTTCGTCGCGGTTG 61.345 60.000 6.13 0.00 0.00 3.77
603 616 1.080705 CCTTCTCTTCGTCGCGGTT 60.081 57.895 6.13 0.00 0.00 4.44
604 617 2.567049 CCTTCTCTTCGTCGCGGT 59.433 61.111 6.13 0.00 0.00 5.68
605 618 2.881352 GCCTTCTCTTCGTCGCGG 60.881 66.667 6.13 0.00 0.00 6.46
606 619 1.517257 ATGCCTTCTCTTCGTCGCG 60.517 57.895 0.00 0.00 0.00 5.87
608 621 1.424493 GGCATGCCTTCTCTTCGTCG 61.424 60.000 29.98 0.00 0.00 5.12
609 622 0.107945 AGGCATGCCTTCTCTTCGTC 60.108 55.000 34.07 3.53 45.70 4.20
610 623 0.392193 CAGGCATGCCTTCTCTTCGT 60.392 55.000 36.92 10.31 45.70 3.85
611 624 1.094073 CCAGGCATGCCTTCTCTTCG 61.094 60.000 36.92 22.37 45.70 3.79
612 625 1.382692 GCCAGGCATGCCTTCTCTTC 61.383 60.000 36.92 17.05 45.70 2.87
613 626 1.379576 GCCAGGCATGCCTTCTCTT 60.380 57.895 36.92 12.85 45.70 2.85
614 627 2.274760 GCCAGGCATGCCTTCTCT 59.725 61.111 36.92 13.71 45.70 3.10
615 628 3.207669 CGCCAGGCATGCCTTCTC 61.208 66.667 36.92 24.69 45.70 2.87
616 629 3.574074 AACGCCAGGCATGCCTTCT 62.574 57.895 36.92 14.58 45.70 2.85
617 630 3.064324 AACGCCAGGCATGCCTTC 61.064 61.111 36.92 27.47 45.70 3.46
618 631 3.376078 CAACGCCAGGCATGCCTT 61.376 61.111 36.92 20.08 45.70 4.35
637 650 4.683334 GTTGCAGCACCGTTCGCC 62.683 66.667 0.00 0.00 0.00 5.54
640 653 4.683334 GGCGTTGCAGCACCGTTC 62.683 66.667 14.35 3.31 39.27 3.95
655 668 3.918253 TTGATCTGGCGTGGTGGGC 62.918 63.158 0.00 0.00 0.00 5.36
656 669 1.746615 CTTGATCTGGCGTGGTGGG 60.747 63.158 0.00 0.00 0.00 4.61
657 670 0.107508 ATCTTGATCTGGCGTGGTGG 60.108 55.000 0.00 0.00 0.00 4.61
658 671 1.293924 GATCTTGATCTGGCGTGGTG 58.706 55.000 3.57 0.00 0.00 4.17
659 672 0.179000 GGATCTTGATCTGGCGTGGT 59.821 55.000 10.03 0.00 0.00 4.16
660 673 0.178767 TGGATCTTGATCTGGCGTGG 59.821 55.000 10.03 0.00 0.00 4.94
661 674 1.871676 CATGGATCTTGATCTGGCGTG 59.128 52.381 10.03 2.91 0.00 5.34
662 675 1.202734 CCATGGATCTTGATCTGGCGT 60.203 52.381 5.56 0.00 0.00 5.68
663 676 1.520494 CCATGGATCTTGATCTGGCG 58.480 55.000 5.56 0.00 0.00 5.69
664 677 1.245732 GCCATGGATCTTGATCTGGC 58.754 55.000 18.40 20.50 42.00 4.85
665 678 1.881072 CGGCCATGGATCTTGATCTGG 60.881 57.143 18.40 12.05 0.00 3.86
666 679 1.520494 CGGCCATGGATCTTGATCTG 58.480 55.000 18.40 0.00 0.00 2.90
667 680 0.399454 CCGGCCATGGATCTTGATCT 59.601 55.000 18.40 0.00 0.00 2.75
668 681 1.239968 GCCGGCCATGGATCTTGATC 61.240 60.000 18.11 2.21 0.00 2.92
669 682 1.228367 GCCGGCCATGGATCTTGAT 60.228 57.895 18.11 0.00 0.00 2.57
670 683 2.192979 GCCGGCCATGGATCTTGA 59.807 61.111 18.11 0.00 0.00 3.02
671 684 3.282157 CGCCGGCCATGGATCTTG 61.282 66.667 23.46 0.00 0.00 3.02
672 685 4.569180 CCGCCGGCCATGGATCTT 62.569 66.667 23.46 0.00 0.00 2.40
688 701 4.741239 TCACCCCTGCCTCCTCCC 62.741 72.222 0.00 0.00 0.00 4.30
689 702 2.367512 ATCACCCCTGCCTCCTCC 60.368 66.667 0.00 0.00 0.00 4.30
690 703 2.750657 CCATCACCCCTGCCTCCTC 61.751 68.421 0.00 0.00 0.00 3.71
691 704 2.693864 CCATCACCCCTGCCTCCT 60.694 66.667 0.00 0.00 0.00 3.69
692 705 3.813724 CCCATCACCCCTGCCTCC 61.814 72.222 0.00 0.00 0.00 4.30
693 706 4.512914 GCCCATCACCCCTGCCTC 62.513 72.222 0.00 0.00 0.00 4.70
702 715 2.824041 ATTCGTGCGGCCCATCAC 60.824 61.111 0.00 1.92 0.00 3.06
703 716 2.607411 ATCATTCGTGCGGCCCATCA 62.607 55.000 0.00 0.00 0.00 3.07
704 717 1.893808 ATCATTCGTGCGGCCCATC 60.894 57.895 0.00 0.00 0.00 3.51
705 718 2.188829 CATCATTCGTGCGGCCCAT 61.189 57.895 0.00 0.00 0.00 4.00
706 719 2.823593 CATCATTCGTGCGGCCCA 60.824 61.111 0.00 0.00 0.00 5.36
707 720 2.513666 TCATCATTCGTGCGGCCC 60.514 61.111 0.00 0.00 0.00 5.80
708 721 2.040213 CTGTCATCATTCGTGCGGCC 62.040 60.000 0.00 0.00 0.00 6.13
709 722 1.083806 TCTGTCATCATTCGTGCGGC 61.084 55.000 0.00 0.00 0.00 6.53
710 723 0.647410 GTCTGTCATCATTCGTGCGG 59.353 55.000 0.00 0.00 0.00 5.69
711 724 1.349234 TGTCTGTCATCATTCGTGCG 58.651 50.000 0.00 0.00 0.00 5.34
712 725 3.246226 GGTATGTCTGTCATCATTCGTGC 59.754 47.826 0.00 0.00 37.91 5.34
713 726 4.432712 TGGTATGTCTGTCATCATTCGTG 58.567 43.478 0.00 0.00 37.91 4.35
714 727 4.736126 TGGTATGTCTGTCATCATTCGT 57.264 40.909 0.00 0.00 37.91 3.85
715 728 5.291971 TGATGGTATGTCTGTCATCATTCG 58.708 41.667 0.00 0.00 40.41 3.34
720 733 5.575995 CGATGATGATGGTATGTCTGTCATC 59.424 44.000 6.69 6.69 43.29 2.92
721 734 5.244626 TCGATGATGATGGTATGTCTGTCAT 59.755 40.000 0.00 0.00 40.25 3.06
722 735 4.584325 TCGATGATGATGGTATGTCTGTCA 59.416 41.667 0.00 0.00 0.00 3.58
723 736 4.920340 GTCGATGATGATGGTATGTCTGTC 59.080 45.833 0.00 0.00 0.00 3.51
724 737 4.586421 AGTCGATGATGATGGTATGTCTGT 59.414 41.667 0.00 0.00 0.00 3.41
725 738 5.048154 AGAGTCGATGATGATGGTATGTCTG 60.048 44.000 0.00 0.00 0.00 3.51
726 739 5.048154 CAGAGTCGATGATGATGGTATGTCT 60.048 44.000 0.00 0.00 0.00 3.41
727 740 5.159925 CAGAGTCGATGATGATGGTATGTC 58.840 45.833 0.00 0.00 0.00 3.06
728 741 4.021632 CCAGAGTCGATGATGATGGTATGT 60.022 45.833 0.00 0.00 0.00 2.29
729 742 4.021632 ACCAGAGTCGATGATGATGGTATG 60.022 45.833 6.07 0.00 37.79 2.39
730 743 4.155709 ACCAGAGTCGATGATGATGGTAT 58.844 43.478 6.07 0.00 37.79 2.73
731 744 3.566351 ACCAGAGTCGATGATGATGGTA 58.434 45.455 6.07 0.00 37.79 3.25
732 745 2.363680 GACCAGAGTCGATGATGATGGT 59.636 50.000 7.22 7.22 42.08 3.55
733 746 2.288702 GGACCAGAGTCGATGATGATGG 60.289 54.545 0.00 0.00 44.54 3.51
734 747 2.363359 TGGACCAGAGTCGATGATGATG 59.637 50.000 0.00 0.00 44.54 3.07
735 748 2.670939 TGGACCAGAGTCGATGATGAT 58.329 47.619 0.00 0.00 44.54 2.45
736 749 2.143876 TGGACCAGAGTCGATGATGA 57.856 50.000 0.00 0.00 44.54 2.92
737 750 2.967599 TTGGACCAGAGTCGATGATG 57.032 50.000 0.00 0.00 44.54 3.07
738 751 4.494091 AATTTGGACCAGAGTCGATGAT 57.506 40.909 0.00 0.00 44.54 2.45
739 752 3.981071 AATTTGGACCAGAGTCGATGA 57.019 42.857 0.00 0.00 44.54 2.92
740 753 4.346734 CAAATTTGGACCAGAGTCGATG 57.653 45.455 10.49 0.00 44.54 3.84
754 767 2.636647 ACCAAGCCCAACCAAATTTG 57.363 45.000 11.40 11.40 0.00 2.32
755 768 4.991789 AATACCAAGCCCAACCAAATTT 57.008 36.364 0.00 0.00 0.00 1.82
756 769 4.103943 ACAAATACCAAGCCCAACCAAATT 59.896 37.500 0.00 0.00 0.00 1.82
757 770 3.650461 ACAAATACCAAGCCCAACCAAAT 59.350 39.130 0.00 0.00 0.00 2.32
758 771 3.041946 ACAAATACCAAGCCCAACCAAA 58.958 40.909 0.00 0.00 0.00 3.28
759 772 2.683768 ACAAATACCAAGCCCAACCAA 58.316 42.857 0.00 0.00 0.00 3.67
760 773 2.390225 ACAAATACCAAGCCCAACCA 57.610 45.000 0.00 0.00 0.00 3.67
761 774 3.762407 AAACAAATACCAAGCCCAACC 57.238 42.857 0.00 0.00 0.00 3.77
762 775 4.698575 TGAAAACAAATACCAAGCCCAAC 58.301 39.130 0.00 0.00 0.00 3.77
763 776 5.559148 ATGAAAACAAATACCAAGCCCAA 57.441 34.783 0.00 0.00 0.00 4.12
764 777 5.559148 AATGAAAACAAATACCAAGCCCA 57.441 34.783 0.00 0.00 0.00 5.36
765 778 5.575218 CGTAATGAAAACAAATACCAAGCCC 59.425 40.000 0.00 0.00 0.00 5.19
766 779 6.153756 ACGTAATGAAAACAAATACCAAGCC 58.846 36.000 0.00 0.00 0.00 4.35
767 780 7.631915 AACGTAATGAAAACAAATACCAAGC 57.368 32.000 0.00 0.00 0.00 4.01
768 781 9.337091 CCTAACGTAATGAAAACAAATACCAAG 57.663 33.333 0.00 0.00 0.00 3.61
769 782 7.808856 GCCTAACGTAATGAAAACAAATACCAA 59.191 33.333 0.00 0.00 0.00 3.67
770 783 7.040617 TGCCTAACGTAATGAAAACAAATACCA 60.041 33.333 0.00 0.00 0.00 3.25
771 784 7.306953 TGCCTAACGTAATGAAAACAAATACC 58.693 34.615 0.00 0.00 0.00 2.73
772 785 8.730970 TTGCCTAACGTAATGAAAACAAATAC 57.269 30.769 0.00 0.00 0.00 1.89
773 786 8.784994 TCTTGCCTAACGTAATGAAAACAAATA 58.215 29.630 0.00 0.00 0.00 1.40
774 787 7.653647 TCTTGCCTAACGTAATGAAAACAAAT 58.346 30.769 0.00 0.00 0.00 2.32
775 788 7.028926 TCTTGCCTAACGTAATGAAAACAAA 57.971 32.000 0.00 0.00 0.00 2.83
776 789 6.621316 TCTTGCCTAACGTAATGAAAACAA 57.379 33.333 0.00 0.00 0.00 2.83
777 790 6.811253 ATCTTGCCTAACGTAATGAAAACA 57.189 33.333 0.00 0.00 0.00 2.83
778 791 8.068380 GGATATCTTGCCTAACGTAATGAAAAC 58.932 37.037 2.05 0.00 0.00 2.43
779 792 7.042321 CGGATATCTTGCCTAACGTAATGAAAA 60.042 37.037 2.05 0.00 0.00 2.29
780 793 6.422701 CGGATATCTTGCCTAACGTAATGAAA 59.577 38.462 2.05 0.00 0.00 2.69
781 794 5.924254 CGGATATCTTGCCTAACGTAATGAA 59.076 40.000 2.05 0.00 0.00 2.57
782 795 5.010314 ACGGATATCTTGCCTAACGTAATGA 59.990 40.000 2.05 0.00 0.00 2.57
783 796 5.227908 ACGGATATCTTGCCTAACGTAATG 58.772 41.667 2.05 0.00 0.00 1.90
784 797 5.464030 ACGGATATCTTGCCTAACGTAAT 57.536 39.130 2.05 0.00 0.00 1.89
790 803 2.035449 CGTGGACGGATATCTTGCCTAA 59.965 50.000 2.05 0.00 35.37 2.69
817 830 2.587522 GGGATTTTAGAGATGGGGCAC 58.412 52.381 0.00 0.00 0.00 5.01
818 831 1.499007 GGGGATTTTAGAGATGGGGCA 59.501 52.381 0.00 0.00 0.00 5.36
819 832 1.783365 AGGGGATTTTAGAGATGGGGC 59.217 52.381 0.00 0.00 0.00 5.80
842 855 9.304335 CGGGTGGGGTATCTATTTATTTATTTT 57.696 33.333 0.00 0.00 0.00 1.82
843 856 7.891712 CCGGGTGGGGTATCTATTTATTTATTT 59.108 37.037 0.00 0.00 0.00 1.40
844 857 7.407729 CCGGGTGGGGTATCTATTTATTTATT 58.592 38.462 0.00 0.00 0.00 1.40
845 858 6.579647 GCCGGGTGGGGTATCTATTTATTTAT 60.580 42.308 2.18 0.00 35.78 1.40
846 859 5.280624 GCCGGGTGGGGTATCTATTTATTTA 60.281 44.000 2.18 0.00 35.78 1.40
847 860 4.507869 GCCGGGTGGGGTATCTATTTATTT 60.508 45.833 2.18 0.00 35.78 1.40
941 978 1.779061 CGGATCGGGGATTGGGGATT 61.779 60.000 0.00 0.00 0.00 3.01
1321 1392 0.252284 ATGAGGTCGAAGAGGGTGGT 60.252 55.000 0.00 0.00 36.95 4.16
1352 1423 1.062488 AGGGGGATCGAGGGATTTGG 61.062 60.000 0.00 0.00 31.51 3.28
1377 1475 4.518249 GAAACAAAGAGTAGATCTGGGGG 58.482 47.826 5.18 0.00 38.67 5.40
1379 1477 5.046304 TCAGGAAACAAAGAGTAGATCTGGG 60.046 44.000 5.18 0.00 38.67 4.45
1381 1479 6.036953 GCATCAGGAAACAAAGAGTAGATCTG 59.963 42.308 5.18 0.00 38.67 2.90
1390 1488 3.569701 GGAACAGCATCAGGAAACAAAGA 59.430 43.478 0.00 0.00 0.00 2.52
1393 1491 2.238521 GGGAACAGCATCAGGAAACAA 58.761 47.619 0.00 0.00 0.00 2.83
1400 1503 2.089980 CTTCAAGGGGAACAGCATCAG 58.910 52.381 0.00 0.00 0.00 2.90
1417 1520 2.478831 GGCAGACCAATCTCGATCTTC 58.521 52.381 0.00 0.00 35.26 2.87
1418 1521 1.139853 GGGCAGACCAATCTCGATCTT 59.860 52.381 0.00 0.00 39.85 2.40
1419 1522 0.755686 GGGCAGACCAATCTCGATCT 59.244 55.000 0.00 0.00 39.85 2.75
1452 1568 2.040178 AGCCCGTCCAACCTAATCTAG 58.960 52.381 0.00 0.00 0.00 2.43
1525 1641 4.557605 CGCACGGGCCAATCATGC 62.558 66.667 2.82 5.42 36.38 4.06
1535 1651 4.487412 GTAGGACGACCGCACGGG 62.487 72.222 14.51 0.00 41.83 5.28
1536 1652 3.392595 GAGTAGGACGACCGCACGG 62.393 68.421 7.71 7.71 41.83 4.94
1537 1653 2.099831 GAGTAGGACGACCGCACG 59.900 66.667 0.00 0.00 41.83 5.34
1600 1809 3.264193 TGAAGCATACCAGACCACAAGAT 59.736 43.478 0.00 0.00 0.00 2.40
1615 1824 7.452880 ACAACAATTGTATACAGTGAAGCAT 57.547 32.000 12.39 2.66 43.27 3.79
1630 1839 7.476667 TCACAGGTTACTAACAACAACAATTG 58.523 34.615 3.24 3.24 35.59 2.32
1631 1840 7.633193 TCACAGGTTACTAACAACAACAATT 57.367 32.000 1.40 0.00 0.00 2.32
1632 1841 7.121463 TGTTCACAGGTTACTAACAACAACAAT 59.879 33.333 1.40 0.00 0.00 2.71
1633 1842 6.430308 TGTTCACAGGTTACTAACAACAACAA 59.570 34.615 1.40 0.00 0.00 2.83
1634 1843 5.938710 TGTTCACAGGTTACTAACAACAACA 59.061 36.000 1.40 0.87 0.00 3.33
1635 1844 6.425577 TGTTCACAGGTTACTAACAACAAC 57.574 37.500 1.40 0.00 0.00 3.32
1636 1845 7.466185 CGATTGTTCACAGGTTACTAACAACAA 60.466 37.037 13.02 13.02 41.35 2.83
1637 1846 6.018588 CGATTGTTCACAGGTTACTAACAACA 60.019 38.462 0.00 0.63 41.35 3.33
1638 1847 6.201425 TCGATTGTTCACAGGTTACTAACAAC 59.799 38.462 0.00 0.00 41.35 3.32
1639 1848 6.282167 TCGATTGTTCACAGGTTACTAACAA 58.718 36.000 0.00 0.00 42.35 2.83
1640 1849 5.845103 TCGATTGTTCACAGGTTACTAACA 58.155 37.500 1.40 0.00 0.00 2.41
1641 1850 6.963049 ATCGATTGTTCACAGGTTACTAAC 57.037 37.500 0.00 0.00 0.00 2.34
1643 1852 6.961359 CAATCGATTGTTCACAGGTTACTA 57.039 37.500 26.58 0.00 33.22 1.82
1657 1866 2.619646 TGGCATGGATGACAATCGATTG 59.380 45.455 31.51 31.51 44.23 2.67
1676 1885 9.060347 ACAATGATAGTGCATCTAATAAGTTGG 57.940 33.333 0.00 0.00 34.46 3.77
1749 1990 6.146837 TGTGTTTTTGATGTTTCCACAAGTTG 59.853 34.615 0.00 0.00 36.16 3.16
1767 2008 7.469260 GCGTATATTATTGTCCTGTGTGTTTT 58.531 34.615 0.00 0.00 0.00 2.43
1768 2009 6.237996 CGCGTATATTATTGTCCTGTGTGTTT 60.238 38.462 0.00 0.00 0.00 2.83
1778 2019 5.324739 ACAACAGCGCGTATATTATTGTC 57.675 39.130 8.43 0.00 0.00 3.18
1790 2049 1.658596 TGCTAGATAAACAACAGCGCG 59.341 47.619 0.00 0.00 34.96 6.86
1877 2141 2.440409 ACAGACATGGATGCAAGGTTC 58.560 47.619 0.00 0.00 0.00 3.62
1881 2145 6.148976 CAGGATAATACAGACATGGATGCAAG 59.851 42.308 0.00 0.00 27.15 4.01
1885 2149 7.002250 AGACAGGATAATACAGACATGGATG 57.998 40.000 0.00 0.00 27.15 3.51
1896 2169 9.997482 GATCGAGAAGATTAGACAGGATAATAC 57.003 37.037 0.00 0.00 40.26 1.89
1904 2177 4.513692 AGTCGGATCGAGAAGATTAGACAG 59.486 45.833 14.38 0.00 42.80 3.51
1918 2191 1.091771 AGGCATGCAAAGTCGGATCG 61.092 55.000 21.36 0.00 0.00 3.69
1924 2197 4.880696 AGATAGAAGAAGGCATGCAAAGTC 59.119 41.667 21.36 10.30 0.00 3.01
1955 2228 0.892358 AGCACACCACAATCAGGCAG 60.892 55.000 0.00 0.00 0.00 4.85
1972 2254 7.672983 ATGTAATGTATGTAATGTGGCTAGC 57.327 36.000 6.04 6.04 0.00 3.42
2011 2293 3.758554 ACAAGAACAGGCATAATGTGGTC 59.241 43.478 0.00 0.00 0.00 4.02
2016 2300 4.171005 CAAGCACAAGAACAGGCATAATG 58.829 43.478 0.00 0.00 0.00 1.90
2036 2320 1.083489 CGCGGAAAAGCTATCACCAA 58.917 50.000 0.00 0.00 34.40 3.67
2037 2321 0.742990 CCGCGGAAAAGCTATCACCA 60.743 55.000 24.07 0.00 34.40 4.17
2038 2322 0.743345 ACCGCGGAAAAGCTATCACC 60.743 55.000 35.90 0.00 34.40 4.02
2046 2330 1.459592 CTACTGAACACCGCGGAAAAG 59.540 52.381 35.90 22.12 0.00 2.27
2048 2332 0.390124 ACTACTGAACACCGCGGAAA 59.610 50.000 35.90 10.96 0.00 3.13
2049 2333 1.246649 TACTACTGAACACCGCGGAA 58.753 50.000 35.90 10.58 0.00 4.30
2050 2334 1.402968 GATACTACTGAACACCGCGGA 59.597 52.381 35.90 7.96 0.00 5.54
2051 2335 1.836383 GATACTACTGAACACCGCGG 58.164 55.000 26.86 26.86 0.00 6.46
2052 2336 1.463805 CGATACTACTGAACACCGCG 58.536 55.000 0.00 0.00 0.00 6.46
2053 2337 1.197910 GCGATACTACTGAACACCGC 58.802 55.000 0.00 0.00 34.71 5.68
2054 2338 2.355132 AGAGCGATACTACTGAACACCG 59.645 50.000 0.00 0.00 0.00 4.94
2070 2377 2.097466 ACAACAAAACAAGTCCAGAGCG 59.903 45.455 0.00 0.00 0.00 5.03
2074 2381 4.798387 GCAGTAACAACAAAACAAGTCCAG 59.202 41.667 0.00 0.00 0.00 3.86
2077 2384 7.193595 ACATAGCAGTAACAACAAAACAAGTC 58.806 34.615 0.00 0.00 0.00 3.01
2090 2397 9.151471 TCTAGAATGAAACAACATAGCAGTAAC 57.849 33.333 0.00 0.00 0.00 2.50
2091 2398 9.890629 ATCTAGAATGAAACAACATAGCAGTAA 57.109 29.630 0.00 0.00 0.00 2.24
2093 2400 9.539825 CTATCTAGAATGAAACAACATAGCAGT 57.460 33.333 0.00 0.00 0.00 4.40
2094 2401 8.986847 CCTATCTAGAATGAAACAACATAGCAG 58.013 37.037 0.00 0.00 0.00 4.24
2095 2402 7.933577 CCCTATCTAGAATGAAACAACATAGCA 59.066 37.037 0.00 0.00 0.00 3.49
2096 2403 7.934120 ACCCTATCTAGAATGAAACAACATAGC 59.066 37.037 0.00 0.00 0.00 2.97
2097 2404 9.838339 AACCCTATCTAGAATGAAACAACATAG 57.162 33.333 0.00 0.00 0.00 2.23
2123 2437 6.469782 TGTAGATGCAACATCTGAGATACA 57.530 37.500 18.10 11.74 0.00 2.29
2151 2465 6.293626 GCGAGCAGTGTATGATTTTGGATTAT 60.294 38.462 0.00 0.00 0.00 1.28
2152 2466 5.007626 GCGAGCAGTGTATGATTTTGGATTA 59.992 40.000 0.00 0.00 0.00 1.75
2153 2467 4.201950 GCGAGCAGTGTATGATTTTGGATT 60.202 41.667 0.00 0.00 0.00 3.01
2154 2468 3.313526 GCGAGCAGTGTATGATTTTGGAT 59.686 43.478 0.00 0.00 0.00 3.41
2155 2469 2.677836 GCGAGCAGTGTATGATTTTGGA 59.322 45.455 0.00 0.00 0.00 3.53
2160 2474 2.977700 CGGCGAGCAGTGTATGATT 58.022 52.632 0.00 0.00 0.00 2.57
2174 2488 2.514592 AACATGGGATCAGCGGCG 60.515 61.111 0.51 0.51 0.00 6.46
2175 2489 1.153086 AGAACATGGGATCAGCGGC 60.153 57.895 0.00 0.00 0.00 6.53
2178 2492 2.286872 CAGACAGAACATGGGATCAGC 58.713 52.381 0.00 0.00 0.00 4.26
2198 2512 4.580580 CACTATGTATGGAAAAGGGAAGCC 59.419 45.833 0.00 0.00 0.00 4.35
2204 2518 7.445121 TCAGCTATCACTATGTATGGAAAAGG 58.555 38.462 0.00 0.00 0.00 3.11
2207 2521 6.875726 GCATCAGCTATCACTATGTATGGAAA 59.124 38.462 0.00 0.00 37.91 3.13
2245 2561 0.861837 CACCACTTCTCTGAACGCAC 59.138 55.000 0.00 0.00 0.00 5.34
2307 2628 9.107177 CTTGCAGAAAAGATGATAACTGTAGAT 57.893 33.333 0.00 0.00 0.00 1.98
2308 2629 8.314021 TCTTGCAGAAAAGATGATAACTGTAGA 58.686 33.333 0.00 0.00 31.19 2.59
2309 2630 8.484641 TCTTGCAGAAAAGATGATAACTGTAG 57.515 34.615 0.00 0.00 31.19 2.74
2310 2631 8.846943 TTCTTGCAGAAAAGATGATAACTGTA 57.153 30.769 0.00 0.00 36.12 2.74
2311 2632 7.750229 TTCTTGCAGAAAAGATGATAACTGT 57.250 32.000 0.00 0.00 36.12 3.55
2431 2789 3.443329 ACAAGGCATGCGTTGATCAATAA 59.557 39.130 43.20 0.73 42.36 1.40
2442 2801 1.130955 GACACAAAACAAGGCATGCG 58.869 50.000 12.44 0.00 0.00 4.73
2463 2822 4.241681 ACGTTTTTGCAGCAAGAGAAAAA 58.758 34.783 8.12 2.89 0.00 1.94
2468 2827 2.796304 TGAACGTTTTTGCAGCAAGAG 58.204 42.857 8.12 4.04 0.00 2.85
2470 2829 2.859538 ACATGAACGTTTTTGCAGCAAG 59.140 40.909 8.12 0.00 0.00 4.01
2475 2834 5.826586 ACATTCTACATGAACGTTTTTGCA 58.173 33.333 0.46 0.00 37.52 4.08
2565 2925 1.000396 CCTGAGAGGGGGCAAAAGG 60.000 63.158 0.00 0.00 0.00 3.11
2633 2994 0.734889 CCTTGATCATGTCCGCAACC 59.265 55.000 0.00 0.00 0.00 3.77
2761 3122 5.009110 TCGCCTACATGATCTCTACTCAAAG 59.991 44.000 0.00 0.00 0.00 2.77
2834 3206 2.487762 TGACATGAAAAAGGGCGCTAAG 59.512 45.455 7.64 0.00 0.00 2.18
2849 3221 7.193377 TCGATGAAACCATTATGATGACATG 57.807 36.000 0.00 0.00 37.87 3.21
2902 3283 3.002862 GCAAACAACGACAGACATACCAA 59.997 43.478 0.00 0.00 0.00 3.67
2904 3285 2.806244 AGCAAACAACGACAGACATACC 59.194 45.455 0.00 0.00 0.00 2.73
2907 3288 2.032054 CACAGCAAACAACGACAGACAT 59.968 45.455 0.00 0.00 0.00 3.06
2912 3294 0.371989 CGACACAGCAAACAACGACA 59.628 50.000 0.00 0.00 0.00 4.35
2913 3295 0.372334 ACGACACAGCAAACAACGAC 59.628 50.000 0.00 0.00 0.00 4.34
2914 3296 0.371989 CACGACACAGCAAACAACGA 59.628 50.000 0.00 0.00 0.00 3.85
2915 3297 0.371989 TCACGACACAGCAAACAACG 59.628 50.000 0.00 0.00 0.00 4.10
2929 3311 2.034179 CCACAAGTCTACACACTCACGA 59.966 50.000 0.00 0.00 0.00 4.35
2983 3368 1.693627 CAGAGTAGTACCCTCGGCAT 58.306 55.000 0.00 0.00 34.08 4.40
2987 3372 2.023318 CGCCAGAGTAGTACCCTCG 58.977 63.158 0.00 0.00 34.08 4.63
3011 3396 2.890109 CTTCATCTGCCGCCGCATC 61.890 63.158 0.00 0.00 46.11 3.91
3012 3397 2.898840 CTTCATCTGCCGCCGCAT 60.899 61.111 0.00 0.00 46.11 4.73
3013 3398 4.081185 TCTTCATCTGCCGCCGCA 62.081 61.111 0.00 0.00 44.78 5.69
3019 5712 0.599728 CGCTAGCCTCTTCATCTGCC 60.600 60.000 9.66 0.00 0.00 4.85
3021 5714 2.897780 GCGCTAGCCTCTTCATCTG 58.102 57.895 9.66 0.00 37.42 2.90
3046 5793 3.264666 GCCAGAGCTACGTCATGAG 57.735 57.895 0.00 0.00 35.50 2.90
3083 5830 1.150536 AAAGCTTGGGAGTTCCGCA 59.849 52.632 0.00 0.00 38.76 5.69
3113 5860 1.833606 TCCTTGTTCAAGGACGGCA 59.166 52.632 24.84 7.76 43.68 5.69
3122 5869 4.243008 TGCCGCCGTCCTTGTTCA 62.243 61.111 0.00 0.00 0.00 3.18
3135 5882 2.358247 AACTAACTGCCGGTGCCG 60.358 61.111 1.90 3.25 36.33 5.69
3137 5884 1.912371 GCTGAACTAACTGCCGGTGC 61.912 60.000 1.90 0.00 38.26 5.01
3138 5885 1.298859 GGCTGAACTAACTGCCGGTG 61.299 60.000 1.90 0.00 42.86 4.94
3139 5886 1.003718 GGCTGAACTAACTGCCGGT 60.004 57.895 1.90 0.00 42.86 5.28
3143 5890 1.807142 GGACTTGGCTGAACTAACTGC 59.193 52.381 0.00 0.00 0.00 4.40
3157 5945 0.609131 AACCGATGCCCAAGGACTTG 60.609 55.000 5.09 5.09 40.13 3.16
3162 5950 1.134946 GAATCAAACCGATGCCCAAGG 59.865 52.381 0.00 0.00 33.40 3.61
3171 5959 7.931948 GGGATTAGAATCTAAGAATCAAACCGA 59.068 37.037 8.78 0.00 35.73 4.69
3173 5961 8.980481 TGGGATTAGAATCTAAGAATCAAACC 57.020 34.615 8.78 1.30 35.73 3.27
3176 5964 9.494271 CGATTGGGATTAGAATCTAAGAATCAA 57.506 33.333 8.78 9.95 35.73 2.57
3177 5965 8.651389 ACGATTGGGATTAGAATCTAAGAATCA 58.349 33.333 8.78 2.36 35.73 2.57
3178 5966 8.930760 CACGATTGGGATTAGAATCTAAGAATC 58.069 37.037 8.78 10.98 35.73 2.52
3179 5967 7.389053 GCACGATTGGGATTAGAATCTAAGAAT 59.611 37.037 8.78 4.49 35.73 2.40
3180 5968 6.706270 GCACGATTGGGATTAGAATCTAAGAA 59.294 38.462 8.78 0.15 35.73 2.52
3181 5969 6.042093 AGCACGATTGGGATTAGAATCTAAGA 59.958 38.462 8.78 0.00 35.73 2.10
3208 6105 3.363970 GGTAACGCATGCAGGATAATTCG 60.364 47.826 19.57 0.00 0.00 3.34
3229 6206 2.568623 ACAGTACCAAGCAAGGAAGG 57.431 50.000 1.01 0.00 0.00 3.46
3233 6210 4.827692 TGTATGTACAGTACCAAGCAAGG 58.172 43.478 8.30 0.00 0.00 3.61
3235 6212 4.634004 GCATGTATGTACAGTACCAAGCAA 59.366 41.667 8.30 0.00 39.92 3.91
3237 6214 3.245284 CGCATGTATGTACAGTACCAAGC 59.755 47.826 8.30 6.88 39.92 4.01
3239 6216 3.196039 ACCGCATGTATGTACAGTACCAA 59.804 43.478 8.30 0.00 39.92 3.67
3241 6218 3.447918 ACCGCATGTATGTACAGTACC 57.552 47.619 8.30 0.00 39.92 3.34
3243 6220 4.722361 TCAACCGCATGTATGTACAGTA 57.278 40.909 0.33 0.00 39.92 2.74
3244 6221 3.603158 TCAACCGCATGTATGTACAGT 57.397 42.857 0.33 0.00 39.92 3.55
3245 6222 4.371786 AGATCAACCGCATGTATGTACAG 58.628 43.478 0.33 0.00 39.92 2.74
3246 6223 4.142049 TGAGATCAACCGCATGTATGTACA 60.142 41.667 0.00 0.00 40.98 2.90
3299 6294 4.769345 TGAATATGGGTGCATGTAGACA 57.231 40.909 0.00 0.00 0.00 3.41
3300 6295 5.532406 ACAATGAATATGGGTGCATGTAGAC 59.468 40.000 0.00 0.00 0.00 2.59
3301 6296 5.693961 ACAATGAATATGGGTGCATGTAGA 58.306 37.500 0.00 0.00 0.00 2.59
3302 6297 6.210796 CAACAATGAATATGGGTGCATGTAG 58.789 40.000 0.00 0.00 0.00 2.74
3303 6298 5.451659 GCAACAATGAATATGGGTGCATGTA 60.452 40.000 0.00 0.00 34.76 2.29
3304 6299 4.681244 GCAACAATGAATATGGGTGCATGT 60.681 41.667 0.00 0.00 34.76 3.21
3329 6324 9.248291 GAAAAACAGAACATCACACAAACATAT 57.752 29.630 0.00 0.00 0.00 1.78
3347 6342 4.672413 GTGTGCATCTTTCGAGAAAAACAG 59.328 41.667 0.00 0.00 0.00 3.16
3348 6343 4.095632 TGTGTGCATCTTTCGAGAAAAACA 59.904 37.500 0.00 0.00 0.00 2.83
3349 6344 4.597079 TGTGTGCATCTTTCGAGAAAAAC 58.403 39.130 0.00 0.00 0.00 2.43
3384 6379 4.100707 CATGAAGGTTTCGTGCATCAAT 57.899 40.909 0.00 0.00 39.57 2.57
3394 6389 6.803320 CACACATACATGAACATGAAGGTTTC 59.197 38.462 19.56 0.00 41.20 2.78
3395 6390 6.489700 TCACACATACATGAACATGAAGGTTT 59.510 34.615 19.56 6.20 41.20 3.27
3445 6440 3.265737 TGCACCTGCTTCCTCCTAATTAA 59.734 43.478 0.00 0.00 42.66 1.40
3447 6442 1.635487 TGCACCTGCTTCCTCCTAATT 59.365 47.619 0.00 0.00 42.66 1.40
3448 6443 1.289160 TGCACCTGCTTCCTCCTAAT 58.711 50.000 0.00 0.00 42.66 1.73
3449 6444 1.065199 CATGCACCTGCTTCCTCCTAA 60.065 52.381 0.00 0.00 42.66 2.69
3450 6445 0.543277 CATGCACCTGCTTCCTCCTA 59.457 55.000 0.00 0.00 42.66 2.94
3451 6446 1.302285 CATGCACCTGCTTCCTCCT 59.698 57.895 0.00 0.00 42.66 3.69
3452 6447 1.001641 ACATGCACCTGCTTCCTCC 60.002 57.895 0.00 0.00 42.66 4.30
3453 6448 0.321919 TCACATGCACCTGCTTCCTC 60.322 55.000 0.00 0.00 42.66 3.71
3474 6469 2.202987 CACTCTCCGCTCCATGGC 60.203 66.667 6.96 0.00 0.00 4.40
3485 6480 7.715265 TTGAAACTCAATTAGTCACACTCTC 57.285 36.000 0.00 0.00 37.50 3.20
3537 6532 6.246420 ACTTCATCATTCTTTTGGTCTTCG 57.754 37.500 0.00 0.00 0.00 3.79
3538 6533 6.147821 TCGACTTCATCATTCTTTTGGTCTTC 59.852 38.462 0.00 0.00 0.00 2.87
3541 10274 5.862924 TCGACTTCATCATTCTTTTGGTC 57.137 39.130 0.00 0.00 0.00 4.02
3600 10333 2.146342 AGCATGACCAAGACTTGTTCG 58.854 47.619 14.03 1.74 0.00 3.95
3625 10358 3.365832 GCATTGATGGCTTAATCACGTG 58.634 45.455 9.94 9.94 36.31 4.49
3660 10393 8.984764 GTACGTGCAAATGGTAATTATCTATCA 58.015 33.333 0.00 0.00 0.00 2.15
3706 10482 7.385650 CAAATGCAACAAATATCGCTAACAAG 58.614 34.615 0.00 0.00 0.00 3.16
3708 10484 5.288232 GCAAATGCAACAAATATCGCTAACA 59.712 36.000 0.00 0.00 41.59 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.