Multiple sequence alignment - TraesCS4A01G472500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G472500 chr4A 100.000 3403 0 0 928 4330 732774321 732770919 0.000000e+00 6285.0
1 TraesCS4A01G472500 chr4A 100.000 685 0 0 1 685 732775248 732774564 0.000000e+00 1266.0
2 TraesCS4A01G472500 chr7D 85.452 2509 242 81 1882 4330 7448096 7445651 0.000000e+00 2497.0
3 TraesCS4A01G472500 chr7D 88.621 870 59 20 928 1786 7449534 7448694 0.000000e+00 1022.0
4 TraesCS4A01G472500 chr7D 85.493 517 56 12 1 510 7450588 7450084 4.960000e-144 521.0
5 TraesCS4A01G472500 chr7A 85.863 2299 187 79 2086 4330 8375134 8372920 0.000000e+00 2318.0
6 TraesCS4A01G472500 chr7A 84.381 1082 103 42 928 1980 8376469 8375425 0.000000e+00 1002.0
7 TraesCS4A01G472500 chr7A 85.163 337 35 7 16 346 8377569 8377242 8.980000e-87 331.0
8 TraesCS4A01G472500 chr7A 100.000 32 0 0 654 685 8376715 8376684 4.680000e-05 60.2
9 TraesCS4A01G472500 chr2B 87.440 828 79 20 2086 2897 759371757 759370939 0.000000e+00 929.0
10 TraesCS4A01G472500 chr4B 88.768 276 29 2 1551 1825 650181813 650181539 1.930000e-88 337.0
11 TraesCS4A01G472500 chr4B 89.219 269 27 2 1551 1818 650120151 650119884 6.940000e-88 335.0
12 TraesCS4A01G472500 chr4B 88.848 269 28 2 1551 1818 650051755 650051488 3.230000e-86 329.0
13 TraesCS4A01G472500 chr4B 88.848 269 28 2 1551 1818 650061364 650061097 3.230000e-86 329.0
14 TraesCS4A01G472500 chr6B 87.156 218 26 2 2910 3126 9003242 9003458 3.340000e-61 246.0
15 TraesCS4A01G472500 chr6D 86.697 218 27 2 2910 3126 4774269 4774053 1.560000e-59 241.0
16 TraesCS4A01G472500 chr6A 86.697 218 27 2 2910 3126 3851895 3851679 1.560000e-59 241.0
17 TraesCS4A01G472500 chr2D 86.425 221 27 3 1875 2094 648988307 648988525 5.600000e-59 239.0
18 TraesCS4A01G472500 chr2D 86.325 117 12 2 2089 2204 648988301 648988414 1.630000e-24 124.0
19 TraesCS4A01G472500 chr2D 85.586 111 13 1 2094 2204 648984547 648984654 3.540000e-21 113.0
20 TraesCS4A01G472500 chr2A 83.333 126 21 0 2149 2274 159638064 159638189 2.740000e-22 117.0
21 TraesCS4A01G472500 chr2A 82.171 129 23 0 2149 2277 735305140 735305012 1.270000e-20 111.0
22 TraesCS4A01G472500 chr3D 97.222 36 0 1 2089 2123 571775705 571775670 4.680000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G472500 chr4A 732770919 732775248 4329 True 3775.500000 6285 100.00000 1 4330 2 chr4A.!!$R1 4329
1 TraesCS4A01G472500 chr7D 7445651 7450588 4937 True 1346.666667 2497 86.52200 1 4330 3 chr7D.!!$R1 4329
2 TraesCS4A01G472500 chr7A 8372920 8377569 4649 True 927.800000 2318 88.85175 16 4330 4 chr7A.!!$R1 4314
3 TraesCS4A01G472500 chr2B 759370939 759371757 818 True 929.000000 929 87.44000 2086 2897 1 chr2B.!!$R1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
965 1261 0.527817 CGCTACCCACCTTGATCGAC 60.528 60.0 0.0 0.0 0.00 4.2 F
1811 2128 0.387239 GACGAACTGTGCCAAATGCC 60.387 55.0 0.0 0.0 40.16 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2708 3551 0.037975 GGCCATTGAACTGCACAAGG 60.038 55.0 0.00 0.0 0.00 3.61 R
3619 4507 0.111310 GCCGCGTTTTGCATGTTTTC 60.111 50.0 4.92 0.0 46.97 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 2.997980 TGTGACAAAGCCTCAAGTTCA 58.002 42.857 0.00 0.00 0.00 3.18
52 54 4.961730 AGCCTCAAGTTCAGATGAGATACT 59.038 41.667 4.43 0.00 44.64 2.12
54 56 6.265196 AGCCTCAAGTTCAGATGAGATACTAG 59.735 42.308 4.43 0.00 44.64 2.57
56 58 6.040278 CCTCAAGTTCAGATGAGATACTAGCA 59.960 42.308 4.43 0.00 44.64 3.49
63 65 4.388165 CAGATGAGATACTAGCATTTGCCG 59.612 45.833 0.00 0.00 43.38 5.69
64 66 4.281941 AGATGAGATACTAGCATTTGCCGA 59.718 41.667 0.00 0.00 43.38 5.54
66 68 4.960938 TGAGATACTAGCATTTGCCGAAT 58.039 39.130 0.00 0.00 43.38 3.34
67 69 6.096673 TGAGATACTAGCATTTGCCGAATA 57.903 37.500 0.00 0.00 43.38 1.75
68 70 5.926542 TGAGATACTAGCATTTGCCGAATAC 59.073 40.000 0.00 0.00 43.38 1.89
120 122 4.580580 GGAAATGAGAAATTAGGACGCCAT 59.419 41.667 0.00 0.00 0.00 4.40
128 130 5.995897 AGAAATTAGGACGCCATTATGGTAC 59.004 40.000 13.28 4.75 40.46 3.34
161 164 5.766150 TGATTTAAAAGGCATATGGTCGG 57.234 39.130 4.56 0.00 0.00 4.79
190 193 1.068250 GCTATCTCGAGGCCACCAC 59.932 63.158 13.56 0.00 0.00 4.16
198 201 1.002201 TCGAGGCCACCACGATAAAAA 59.998 47.619 5.01 0.00 41.21 1.94
202 205 1.921243 GCCACCACGATAAAAATGGC 58.079 50.000 0.00 0.00 45.26 4.40
250 374 3.651803 TTTTATGAGGGTGGTTTTGCG 57.348 42.857 0.00 0.00 0.00 4.85
252 376 0.963355 TATGAGGGTGGTTTTGCGGC 60.963 55.000 0.00 0.00 0.00 6.53
279 403 6.987386 CCTTTTGGTGTTATACAATGGTGAA 58.013 36.000 0.00 0.00 34.07 3.18
294 418 7.193595 ACAATGGTGAAAACTAAAGACTTTCG 58.806 34.615 3.07 0.34 32.79 3.46
295 419 6.937436 ATGGTGAAAACTAAAGACTTTCGT 57.063 33.333 3.07 1.06 32.79 3.85
301 425 6.764085 TGAAAACTAAAGACTTTCGTCCATCA 59.236 34.615 3.07 7.14 41.16 3.07
316 440 1.089920 CATCAAGGGAGACAAAGCCG 58.910 55.000 0.00 0.00 0.00 5.52
328 452 5.023533 AGACAAAGCCGTGTATCATACAT 57.976 39.130 0.00 0.00 41.34 2.29
336 460 3.366070 CCGTGTATCATACATCGAGGACC 60.366 52.174 16.58 0.00 41.34 4.46
346 470 4.742201 CGAGGACCTGGCACCACG 62.742 72.222 0.00 13.41 34.57 4.94
350 474 2.110213 GACCTGGCACCACGACAA 59.890 61.111 0.00 0.00 0.00 3.18
352 476 1.577328 GACCTGGCACCACGACAATG 61.577 60.000 0.00 0.00 0.00 2.82
353 477 2.562912 CTGGCACCACGACAATGC 59.437 61.111 0.00 0.00 38.68 3.56
361 485 3.121030 ACGACAATGCCAGCGAGC 61.121 61.111 0.00 0.00 0.00 5.03
405 529 7.513505 CGCGCAAATCATTAAATTCGATTTCTT 60.514 33.333 8.75 0.00 37.28 2.52
419 543 5.123227 TCGATTTCTTTGAACACTTCACCT 58.877 37.500 0.00 0.00 39.87 4.00
467 592 2.737252 GAGCAGTACGAAAACTTCAGGG 59.263 50.000 0.00 0.00 0.00 4.45
468 593 2.104281 AGCAGTACGAAAACTTCAGGGT 59.896 45.455 0.00 0.00 0.00 4.34
484 609 1.066858 AGGGTTCGCTCCGCATATATG 60.067 52.381 8.45 8.45 0.00 1.78
529 758 3.843893 AAAAATGCTTGAAGGTTGGCT 57.156 38.095 0.00 0.00 0.00 4.75
533 762 0.884704 TGCTTGAAGGTTGGCTCGAC 60.885 55.000 0.00 0.00 0.00 4.20
535 764 1.291877 CTTGAAGGTTGGCTCGACGG 61.292 60.000 0.00 0.00 0.00 4.79
545 774 3.449227 CTCGACGGTAGGCAGGCA 61.449 66.667 0.00 0.00 0.00 4.75
550 779 1.956629 GACGGTAGGCAGGCAAGCTA 61.957 60.000 0.00 0.00 34.17 3.32
965 1261 0.527817 CGCTACCCACCTTGATCGAC 60.528 60.000 0.00 0.00 0.00 4.20
976 1272 4.157120 GATCGACCCCCACCCACG 62.157 72.222 0.00 0.00 0.00 4.94
1138 1442 4.435970 TCTCCCGCCGTAGCCTGA 62.436 66.667 0.00 0.00 34.57 3.86
1139 1443 3.905678 CTCCCGCCGTAGCCTGAG 61.906 72.222 0.00 0.00 34.57 3.35
1203 1510 2.610727 GGTGAAGGAGAAGAAGGTGTCG 60.611 54.545 0.00 0.00 0.00 4.35
1338 1645 0.898320 ACATGGTCTTCTCCACCGAG 59.102 55.000 0.00 0.00 40.51 4.63
1486 1793 3.296709 AAGACCGTACGCCCTGCTG 62.297 63.158 10.49 0.00 0.00 4.41
1492 1799 4.129737 TACGCCCTGCTGCTCGAC 62.130 66.667 0.00 0.00 0.00 4.20
1498 1805 4.154347 CTGCTGCTCGACCCCTCC 62.154 72.222 0.00 0.00 0.00 4.30
1501 1808 2.503061 CTGCTCGACCCCTCCATG 59.497 66.667 0.00 0.00 0.00 3.66
1512 1819 3.842923 CTCCATGCCGCCGTCTCT 61.843 66.667 0.00 0.00 0.00 3.10
1513 1820 4.147449 TCCATGCCGCCGTCTCTG 62.147 66.667 0.00 0.00 0.00 3.35
1515 1822 4.827087 CATGCCGCCGTCTCTGCT 62.827 66.667 0.00 0.00 0.00 4.24
1521 1828 4.385405 GCCGTCTCTGCTGCAGGT 62.385 66.667 27.79 0.00 31.51 4.00
1542 1852 1.778026 CTCGCTGACTGAAATCGATCG 59.222 52.381 9.36 9.36 0.00 3.69
1543 1853 1.400494 TCGCTGACTGAAATCGATCGA 59.600 47.619 21.86 21.86 0.00 3.59
1544 1854 2.033424 TCGCTGACTGAAATCGATCGAT 59.967 45.455 24.60 24.60 36.23 3.59
1545 1855 2.403368 CGCTGACTGAAATCGATCGATC 59.597 50.000 29.48 19.84 33.08 3.69
1605 1915 4.003788 AACGACGCAGGGGAGGTG 62.004 66.667 0.00 0.00 0.00 4.00
1645 1955 4.338879 CAATTTCCTCTGTGAGTCCCAAT 58.661 43.478 0.00 0.00 0.00 3.16
1649 1959 1.912043 CCTCTGTGAGTCCCAATTCCT 59.088 52.381 0.00 0.00 0.00 3.36
1652 1962 2.978978 TCTGTGAGTCCCAATTCCTTCA 59.021 45.455 0.00 0.00 0.00 3.02
1662 1972 4.476113 TCCCAATTCCTTCACAGAGATGAT 59.524 41.667 0.00 0.00 0.00 2.45
1666 1976 6.546403 CCAATTCCTTCACAGAGATGATGAAT 59.454 38.462 0.00 0.00 34.45 2.57
1668 1978 8.467598 CAATTCCTTCACAGAGATGATGAATTT 58.532 33.333 9.36 0.00 37.82 1.82
1669 1979 6.997239 TCCTTCACAGAGATGATGAATTTG 57.003 37.500 0.00 0.00 32.16 2.32
1670 1980 5.356190 TCCTTCACAGAGATGATGAATTTGC 59.644 40.000 0.00 0.00 32.16 3.68
1671 1981 5.124936 CCTTCACAGAGATGATGAATTTGCA 59.875 40.000 0.00 0.00 32.16 4.08
1672 1982 6.183360 CCTTCACAGAGATGATGAATTTGCAT 60.183 38.462 0.00 0.00 32.16 3.96
1674 1984 6.792326 TCACAGAGATGATGAATTTGCATTC 58.208 36.000 0.00 0.00 39.58 2.67
1677 1987 7.432545 CACAGAGATGATGAATTTGCATTCTTC 59.567 37.037 8.34 8.34 41.14 2.87
1678 1988 7.339721 ACAGAGATGATGAATTTGCATTCTTCT 59.660 33.333 13.84 6.40 41.25 2.85
1679 1989 7.858382 CAGAGATGATGAATTTGCATTCTTCTC 59.142 37.037 13.84 12.32 41.25 2.87
1680 1990 7.776030 AGAGATGATGAATTTGCATTCTTCTCT 59.224 33.333 13.84 13.67 41.25 3.10
1681 1991 8.294954 AGATGATGAATTTGCATTCTTCTCTT 57.705 30.769 13.84 3.52 41.25 2.85
1682 1992 8.407064 AGATGATGAATTTGCATTCTTCTCTTC 58.593 33.333 13.84 9.66 41.25 2.87
1683 1993 7.457024 TGATGAATTTGCATTCTTCTCTTCA 57.543 32.000 13.84 7.98 41.25 3.02
1684 1994 7.535997 TGATGAATTTGCATTCTTCTCTTCAG 58.464 34.615 13.84 0.00 41.25 3.02
1685 1995 6.889301 TGAATTTGCATTCTTCTCTTCAGT 57.111 33.333 1.98 0.00 39.81 3.41
1686 1996 6.906659 TGAATTTGCATTCTTCTCTTCAGTC 58.093 36.000 1.98 0.00 39.81 3.51
1687 1997 6.713903 TGAATTTGCATTCTTCTCTTCAGTCT 59.286 34.615 1.98 0.00 39.81 3.24
1688 1998 7.230108 TGAATTTGCATTCTTCTCTTCAGTCTT 59.770 33.333 1.98 0.00 39.81 3.01
1689 1999 8.627208 AATTTGCATTCTTCTCTTCAGTCTTA 57.373 30.769 0.00 0.00 0.00 2.10
1690 2000 7.664082 TTTGCATTCTTCTCTTCAGTCTTAG 57.336 36.000 0.00 0.00 0.00 2.18
1704 2015 9.784531 TCTTCAGTCTTAGAACAATCTGAAAAT 57.215 29.630 11.53 0.00 39.99 1.82
1723 2034 7.302524 TGAAAATTTATTCAGACTAACGGTGC 58.697 34.615 0.00 0.00 34.50 5.01
1724 2035 7.174253 TGAAAATTTATTCAGACTAACGGTGCT 59.826 33.333 0.00 0.00 34.50 4.40
1725 2036 6.663944 AATTTATTCAGACTAACGGTGCTC 57.336 37.500 0.00 0.00 0.00 4.26
1726 2037 2.279582 ATTCAGACTAACGGTGCTCG 57.720 50.000 0.00 0.00 45.88 5.03
1735 2046 0.390124 AACGGTGCTCGGTTCAGTTA 59.610 50.000 5.95 0.00 44.45 2.24
1744 2055 3.554337 GCTCGGTTCAGTTAAGTTCAGGA 60.554 47.826 0.00 0.00 0.00 3.86
1745 2056 4.822026 CTCGGTTCAGTTAAGTTCAGGAT 58.178 43.478 0.00 0.00 0.00 3.24
1749 2060 6.204108 TCGGTTCAGTTAAGTTCAGGATTTTC 59.796 38.462 0.00 0.00 0.00 2.29
1750 2061 6.567891 CGGTTCAGTTAAGTTCAGGATTTTCC 60.568 42.308 0.00 0.00 36.58 3.13
1761 2072 2.813754 CAGGATTTTCCGCAGTTCAGAA 59.186 45.455 0.00 0.00 42.75 3.02
1770 2081 2.611292 CCGCAGTTCAGAAATCAGGATC 59.389 50.000 0.00 0.00 0.00 3.36
1771 2082 2.283617 CGCAGTTCAGAAATCAGGATCG 59.716 50.000 0.00 0.00 0.00 3.69
1772 2083 3.265791 GCAGTTCAGAAATCAGGATCGT 58.734 45.455 0.00 0.00 0.00 3.73
1774 2085 4.201763 GCAGTTCAGAAATCAGGATCGTTC 60.202 45.833 0.00 0.00 0.00 3.95
1779 2090 7.175641 AGTTCAGAAATCAGGATCGTTCAATTT 59.824 33.333 0.00 0.00 0.00 1.82
1781 2092 8.560355 TCAGAAATCAGGATCGTTCAATTTTA 57.440 30.769 0.00 0.00 0.00 1.52
1789 2100 9.280174 TCAGGATCGTTCAATTTTACTTTAAGT 57.720 29.630 2.32 2.32 0.00 2.24
1811 2128 0.387239 GACGAACTGTGCCAAATGCC 60.387 55.000 0.00 0.00 40.16 4.40
1815 2132 2.340337 GAACTGTGCCAAATGCCATTC 58.660 47.619 0.00 0.00 40.16 2.67
1820 2137 4.178540 CTGTGCCAAATGCCATTCTTTAG 58.821 43.478 0.00 0.00 40.16 1.85
1828 2146 5.664294 AATGCCATTCTTTAGTGCAATCA 57.336 34.783 0.00 0.00 35.30 2.57
1830 2148 5.664294 TGCCATTCTTTAGTGCAATCAAT 57.336 34.783 0.00 0.00 0.00 2.57
1831 2149 6.040209 TGCCATTCTTTAGTGCAATCAATT 57.960 33.333 0.00 0.00 0.00 2.32
1832 2150 6.465948 TGCCATTCTTTAGTGCAATCAATTT 58.534 32.000 0.00 0.00 0.00 1.82
1833 2151 6.591062 TGCCATTCTTTAGTGCAATCAATTTC 59.409 34.615 0.00 0.00 0.00 2.17
1834 2152 6.815142 GCCATTCTTTAGTGCAATCAATTTCT 59.185 34.615 0.00 0.00 0.00 2.52
1835 2153 7.332678 GCCATTCTTTAGTGCAATCAATTTCTT 59.667 33.333 0.00 0.00 0.00 2.52
1857 2175 9.507329 TTCTTTTGTACTCTGCAATAGATTTCT 57.493 29.630 2.85 0.00 35.19 2.52
1861 2200 5.977725 TGTACTCTGCAATAGATTTCTACGC 59.022 40.000 2.85 4.61 34.21 4.42
1863 2202 5.046529 ACTCTGCAATAGATTTCTACGCTG 58.953 41.667 2.85 10.02 34.21 5.18
1865 2204 4.805719 TCTGCAATAGATTTCTACGCTGTG 59.194 41.667 10.50 0.00 34.12 3.66
1871 2210 3.403038 AGATTTCTACGCTGTGCTGTTT 58.597 40.909 0.00 0.00 0.00 2.83
1872 2211 4.566004 AGATTTCTACGCTGTGCTGTTTA 58.434 39.130 0.00 0.00 0.00 2.01
1873 2212 4.627467 AGATTTCTACGCTGTGCTGTTTAG 59.373 41.667 0.00 0.00 0.00 1.85
1880 2219 2.605338 CGCTGTGCTGTTTAGTTGCATT 60.605 45.455 0.00 0.00 39.00 3.56
1892 2231 5.765576 TTAGTTGCATTCCCCTGTACTTA 57.234 39.130 0.00 0.00 0.00 2.24
1894 2233 4.781934 AGTTGCATTCCCCTGTACTTATC 58.218 43.478 0.00 0.00 0.00 1.75
1896 2235 4.689612 TGCATTCCCCTGTACTTATCTC 57.310 45.455 0.00 0.00 0.00 2.75
1901 2240 3.563223 TCCCCTGTACTTATCTCCGAAG 58.437 50.000 0.00 0.00 0.00 3.79
1939 2439 4.500603 GACTTCAGAGTCGGTTCAGTTA 57.499 45.455 0.00 0.00 42.60 2.24
1943 2443 2.029290 TCAGAGTCGGTTCAGTTAAGGC 60.029 50.000 0.00 0.00 0.00 4.35
1944 2444 2.028930 CAGAGTCGGTTCAGTTAAGGCT 60.029 50.000 0.00 0.00 0.00 4.58
1948 2448 1.877443 TCGGTTCAGTTAAGGCTTTGC 59.123 47.619 4.45 0.00 0.00 3.68
1954 2454 2.158682 TCAGTTAAGGCTTTGCAGACCA 60.159 45.455 4.45 0.00 0.00 4.02
1956 2456 3.084786 AGTTAAGGCTTTGCAGACCATC 58.915 45.455 4.45 0.00 0.00 3.51
1957 2457 3.084786 GTTAAGGCTTTGCAGACCATCT 58.915 45.455 4.45 0.00 0.00 2.90
1959 2459 2.706339 AGGCTTTGCAGACCATCTAG 57.294 50.000 4.76 0.00 0.00 2.43
1981 2481 3.947910 ATCTGTTTCTTGTGCCAATGG 57.052 42.857 0.00 0.00 0.00 3.16
1994 2494 3.057736 GTGCCAATGGATATCTGCATCAC 60.058 47.826 2.05 0.00 31.37 3.06
2005 2505 8.217111 TGGATATCTGCATCACCATTTACTAAA 58.783 33.333 2.05 0.00 0.00 1.85
2006 2506 9.066892 GGATATCTGCATCACCATTTACTAAAA 57.933 33.333 2.05 0.00 0.00 1.52
2041 2541 9.512435 CTCAGGCTCATTTAATATTGTTCTTTG 57.488 33.333 0.00 0.00 0.00 2.77
2061 2561 6.494491 TCTTTGTTCACTGGAATCCATGAATT 59.506 34.615 21.25 0.00 35.38 2.17
2075 2575 9.760077 GAATCCATGAATTTTATCTCTGCAATT 57.240 29.630 0.00 0.00 0.00 2.32
2103 2916 1.266867 AAGTTGGCATTGCATCCCCC 61.267 55.000 11.39 0.00 0.00 5.40
2111 2924 2.422803 GCATTGCATCCCCCTGTACTTA 60.423 50.000 3.15 0.00 0.00 2.24
2120 2933 4.547671 TCCCCCTGTACTTATCTCTGAAG 58.452 47.826 0.00 0.00 0.00 3.02
2122 2935 4.962995 CCCCCTGTACTTATCTCTGAAGAA 59.037 45.833 0.00 0.00 34.49 2.52
2133 2947 9.598517 ACTTATCTCTGAAGAAAAATCTGCTAG 57.401 33.333 0.00 0.00 34.49 3.42
2141 2955 6.767902 TGAAGAAAAATCTGCTAGTGTTCAGT 59.232 34.615 0.00 0.00 0.00 3.41
2204 3027 3.969117 TGTGTTTCTTGTGCTGATGAC 57.031 42.857 0.00 0.00 0.00 3.06
2205 3028 2.618241 TGTGTTTCTTGTGCTGATGACC 59.382 45.455 0.00 0.00 0.00 4.02
2209 3032 5.008613 GTGTTTCTTGTGCTGATGACCTTTA 59.991 40.000 0.00 0.00 0.00 1.85
2216 3039 9.851686 TCTTGTGCTGATGACCTTTATATATTT 57.148 29.630 0.00 0.00 0.00 1.40
2261 3084 7.500992 TGATCACCATTTACTAAGACTGGATC 58.499 38.462 0.00 0.00 0.00 3.36
2263 3086 7.113658 TCACCATTTACTAAGACTGGATCTC 57.886 40.000 0.00 0.00 36.27 2.75
2268 3091 8.373981 CCATTTACTAAGACTGGATCTCATCAT 58.626 37.037 0.00 0.00 36.27 2.45
2269 3092 9.205719 CATTTACTAAGACTGGATCTCATCATG 57.794 37.037 0.00 0.00 36.27 3.07
2274 3097 3.577848 AGACTGGATCTCATCATGGCTAC 59.422 47.826 0.00 0.00 28.16 3.58
2275 3098 3.311990 ACTGGATCTCATCATGGCTACA 58.688 45.455 0.00 0.00 0.00 2.74
2276 3099 3.908733 ACTGGATCTCATCATGGCTACAT 59.091 43.478 0.00 0.00 37.99 2.29
2277 3100 8.201524 AGACTGGATCTCATCATGGCTACATG 62.202 46.154 1.42 1.42 44.43 3.21
2427 3265 3.908733 ACTATCATCATGGTGAGCCTGAT 59.091 43.478 15.14 0.00 34.91 2.90
2441 3279 2.091665 AGCCTGATCCCCATGGTTAAAG 60.092 50.000 11.73 1.48 0.00 1.85
2489 3327 4.876107 ACTGATGGCCAACTAGTAATTTCG 59.124 41.667 10.96 0.00 0.00 3.46
2492 3330 3.602483 TGGCCAACTAGTAATTTCGACC 58.398 45.455 0.61 0.00 0.00 4.79
2494 3332 3.869832 GGCCAACTAGTAATTTCGACCTC 59.130 47.826 0.00 0.00 0.00 3.85
2498 3336 6.338146 CCAACTAGTAATTTCGACCTCATCA 58.662 40.000 0.00 0.00 0.00 3.07
2579 3417 6.197364 AGATGTTCTTCGAGAAGTACGAAT 57.803 37.500 14.71 6.62 46.01 3.34
2684 3525 6.135290 TGTTCACAAGAAACCTGAATCAAG 57.865 37.500 0.00 0.00 35.08 3.02
2688 3530 7.206981 TCACAAGAAACCTGAATCAAGAATC 57.793 36.000 0.00 0.00 0.00 2.52
2708 3551 1.039856 AATGTGTGAACCCTTGTGCC 58.960 50.000 0.00 0.00 0.00 5.01
2750 3593 0.251634 CCTGGCTCTTCTTGGGAGTC 59.748 60.000 0.00 0.00 36.14 3.36
2768 3611 2.583520 CCCACCAGCAGCTCTCTC 59.416 66.667 0.00 0.00 0.00 3.20
2796 3639 0.317938 GGAGGTCGGAACATCGATCG 60.318 60.000 9.36 9.36 44.20 3.69
2797 3640 0.935366 GAGGTCGGAACATCGATCGC 60.935 60.000 11.09 0.00 44.20 4.58
2798 3641 1.949631 GGTCGGAACATCGATCGCC 60.950 63.158 11.09 4.30 41.40 5.54
2840 3685 6.428159 TGAGATTTTTCTTCCAAGTGCTACTC 59.572 38.462 0.00 0.00 0.00 2.59
2843 3688 3.685139 TTCTTCCAAGTGCTACTCCAG 57.315 47.619 0.00 0.00 0.00 3.86
2844 3689 2.609747 TCTTCCAAGTGCTACTCCAGT 58.390 47.619 0.00 0.00 0.00 4.00
2845 3690 2.300152 TCTTCCAAGTGCTACTCCAGTG 59.700 50.000 0.00 0.00 0.00 3.66
2898 3743 0.995728 GTTTGGTTGCACCGTGTTTG 59.004 50.000 0.00 0.00 42.58 2.93
2899 3744 0.737715 TTTGGTTGCACCGTGTTTGC 60.738 50.000 0.00 0.00 42.58 3.68
2900 3745 2.653766 GGTTGCACCGTGTTTGCG 60.654 61.111 0.00 0.00 43.34 4.85
2901 3746 2.405594 GTTGCACCGTGTTTGCGA 59.594 55.556 0.00 0.00 43.34 5.10
2903 3748 1.226435 TTGCACCGTGTTTGCGAAC 60.226 52.632 10.09 10.09 43.34 3.95
2904 3749 2.720750 GCACCGTGTTTGCGAACG 60.721 61.111 12.19 1.69 38.65 3.95
3074 3919 3.067833 GCTGAAGAAGGACAACACCTAC 58.932 50.000 0.00 0.00 39.62 3.18
3089 3934 1.274167 ACCTACGTGTACATGTGTGGG 59.726 52.381 29.30 26.30 32.99 4.61
3113 3958 1.439543 AGGGCATGGAGAAGGGTATC 58.560 55.000 0.00 0.00 0.00 2.24
3126 3971 5.083122 AGAAGGGTATCGATGAGATCATGT 58.917 41.667 8.54 0.00 40.66 3.21
3128 3973 5.144692 AGGGTATCGATGAGATCATGTTG 57.855 43.478 8.54 0.00 40.66 3.33
3132 3977 2.554142 TCGATGAGATCATGTTGCCAC 58.446 47.619 0.00 0.00 36.57 5.01
3152 3997 1.541588 CTGGCTGCAAAAGAAGGTACC 59.458 52.381 2.73 2.73 0.00 3.34
3160 4005 3.564511 CAAAAGAAGGTACCACAATGCG 58.435 45.455 15.94 0.00 0.00 4.73
3175 4020 5.107760 CCACAATGCGTTCTTCTGAATTTTG 60.108 40.000 0.00 0.00 34.40 2.44
3176 4021 4.984161 ACAATGCGTTCTTCTGAATTTTGG 59.016 37.500 0.00 0.00 34.40 3.28
3177 4022 3.011949 TGCGTTCTTCTGAATTTTGGC 57.988 42.857 0.00 0.00 34.40 4.52
3180 4025 3.426525 GCGTTCTTCTGAATTTTGGCTTG 59.573 43.478 0.00 0.00 34.40 4.01
3181 4026 4.610945 CGTTCTTCTGAATTTTGGCTTGT 58.389 39.130 0.00 0.00 34.40 3.16
3208 4078 9.979578 TTTTTGTTGATGCAATAGTTCAACTAT 57.020 25.926 23.49 4.03 45.93 2.12
3210 4080 9.624697 TTTGTTGATGCAATAGTTCAACTATTC 57.375 29.630 23.49 13.75 45.49 1.75
3212 4082 9.013229 TGTTGATGCAATAGTTCAACTATTCTT 57.987 29.630 23.49 11.79 45.49 2.52
3214 4084 8.791327 TGATGCAATAGTTCAACTATTCTTGA 57.209 30.769 18.36 5.05 45.49 3.02
3215 4085 9.230122 TGATGCAATAGTTCAACTATTCTTGAA 57.770 29.630 18.36 6.22 45.49 2.69
3224 4094 8.704668 AGTTCAACTATTCTTGAATTTTGGGTT 58.295 29.630 0.95 0.00 41.17 4.11
3225 4095 8.764287 GTTCAACTATTCTTGAATTTTGGGTTG 58.236 33.333 0.95 9.12 41.17 3.77
3226 4096 8.243961 TCAACTATTCTTGAATTTTGGGTTGA 57.756 30.769 0.95 10.72 37.54 3.18
3227 4097 8.700051 TCAACTATTCTTGAATTTTGGGTTGAA 58.300 29.630 16.04 0.00 37.14 2.69
3228 4098 9.492973 CAACTATTCTTGAATTTTGGGTTGAAT 57.507 29.630 0.95 0.00 34.25 2.57
3233 4103 7.565323 TCTTGAATTTTGGGTTGAATTTTGG 57.435 32.000 0.00 0.00 0.00 3.28
3234 4104 6.545298 TCTTGAATTTTGGGTTGAATTTTGGG 59.455 34.615 0.00 0.00 0.00 4.12
3235 4105 5.760131 TGAATTTTGGGTTGAATTTTGGGT 58.240 33.333 0.00 0.00 0.00 4.51
3245 4115 6.460814 GGGTTGAATTTTGGGTTGAATTTTGG 60.461 38.462 0.00 0.00 0.00 3.28
3248 4118 6.190587 TGAATTTTGGGTTGAATTTTGGGTT 58.809 32.000 0.00 0.00 0.00 4.11
3253 4123 4.265073 TGGGTTGAATTTTGGGTTGTTTG 58.735 39.130 0.00 0.00 0.00 2.93
3254 4124 4.019321 TGGGTTGAATTTTGGGTTGTTTGA 60.019 37.500 0.00 0.00 0.00 2.69
3258 4131 6.094742 GGTTGAATTTTGGGTTGTTTGAATGT 59.905 34.615 0.00 0.00 0.00 2.71
3278 4151 4.399219 TGTTAGGGATCGACTGGATAGAG 58.601 47.826 0.00 0.00 34.82 2.43
3344 4228 7.526142 AGTCTACTGATTCTTGTGTCTTACA 57.474 36.000 0.00 0.00 37.56 2.41
3445 4329 8.792830 ATAAAGGGTGTATCATTTCCGATATG 57.207 34.615 0.00 0.00 30.79 1.78
3473 4358 6.434028 TCATCTTGGTTTATTTCAACTCCCAG 59.566 38.462 0.00 0.00 0.00 4.45
3506 4391 6.879400 ACACTACTATTCCCTCTGCTAAAAG 58.121 40.000 0.00 0.00 0.00 2.27
3591 4478 7.075121 TGCAGTTAATTAGAACATTTCACGTG 58.925 34.615 9.94 9.94 0.00 4.49
3635 4530 1.451651 CTCGGAAAACATGCAAAACGC 59.548 47.619 0.00 0.00 42.89 4.84
3658 4553 4.955617 GGCGACGTCTAGTATACATAGTG 58.044 47.826 14.70 4.84 0.00 2.74
3662 4557 6.616049 GCGACGTCTAGTATACATAGTGTCTG 60.616 46.154 14.70 11.74 31.03 3.51
3678 4573 4.872691 AGTGTCTGTGATGTTGCTATTAGC 59.127 41.667 8.80 8.80 42.82 3.09
3722 4617 6.222038 TCATTATCCTACTGAGTGTTGTCC 57.778 41.667 0.00 0.00 0.00 4.02
3737 4632 3.056107 TGTTGTCCGGATCAGAACCTAAG 60.056 47.826 7.81 0.00 0.00 2.18
3758 4653 2.352034 GCAGCTTCATGACATGACTGAG 59.648 50.000 27.74 19.81 39.39 3.35
3856 4752 4.466828 CGTGTTGGAGAACTTATTTGCTG 58.533 43.478 0.00 0.00 32.79 4.41
3857 4753 4.229876 GTGTTGGAGAACTTATTTGCTGC 58.770 43.478 0.00 0.00 32.79 5.25
3858 4754 3.888323 TGTTGGAGAACTTATTTGCTGCA 59.112 39.130 0.00 0.00 32.79 4.41
3859 4755 4.229876 GTTGGAGAACTTATTTGCTGCAC 58.770 43.478 0.00 0.00 0.00 4.57
3860 4756 2.819608 TGGAGAACTTATTTGCTGCACC 59.180 45.455 0.00 0.00 0.00 5.01
3882 4778 1.679153 CACTTGTTAACACCCACCCAC 59.321 52.381 8.07 0.00 0.00 4.61
3883 4779 1.324383 CTTGTTAACACCCACCCACC 58.676 55.000 8.07 0.00 0.00 4.61
3914 4812 1.449246 CGCTCCTCTGCTTTCCCAG 60.449 63.158 0.00 0.00 0.00 4.45
3924 4822 1.768275 TGCTTTCCCAGTCTTGAGTCA 59.232 47.619 0.00 0.00 0.00 3.41
3925 4823 2.224378 TGCTTTCCCAGTCTTGAGTCAG 60.224 50.000 0.00 0.00 0.00 3.51
3934 4835 0.191064 TCTTGAGTCAGGGTCAGGGT 59.809 55.000 1.97 0.00 0.00 4.34
3967 4868 1.067283 TGCACCTGTTGTTGTTGTTGG 60.067 47.619 0.00 0.00 0.00 3.77
3970 4871 1.548269 ACCTGTTGTTGTTGTTGGTGG 59.452 47.619 0.00 0.00 0.00 4.61
3976 4877 0.174617 GTTGTTGTTGGTGGTGGTGG 59.825 55.000 0.00 0.00 0.00 4.61
3979 4880 0.968393 GTTGTTGGTGGTGGTGGTGT 60.968 55.000 0.00 0.00 0.00 4.16
3983 4884 2.123897 GGTGGTGGTGGTGTTGCT 60.124 61.111 0.00 0.00 0.00 3.91
3984 4885 2.489275 GGTGGTGGTGGTGTTGCTG 61.489 63.158 0.00 0.00 0.00 4.41
3985 4886 2.832661 TGGTGGTGGTGTTGCTGC 60.833 61.111 0.00 0.00 0.00 5.25
3986 4887 2.519302 GGTGGTGGTGTTGCTGCT 60.519 61.111 0.00 0.00 0.00 4.24
3987 4888 2.723746 GTGGTGGTGTTGCTGCTG 59.276 61.111 0.00 0.00 0.00 4.41
3991 4892 1.666209 GGTGGTGTTGCTGCTGTTGT 61.666 55.000 0.00 0.00 0.00 3.32
3994 4895 0.173255 GGTGTTGCTGCTGTTGTTGT 59.827 50.000 0.00 0.00 0.00 3.32
4021 4922 1.226802 CTCCGTGTCATCCTCTGCG 60.227 63.158 0.00 0.00 0.00 5.18
4039 4940 1.580845 CGACTTTTGGAGGCTGCTGG 61.581 60.000 7.74 0.00 0.00 4.85
4077 4978 1.073025 CCCACAGCAGCAGGTACAA 59.927 57.895 0.00 0.00 0.00 2.41
4127 5028 1.921887 CACTGCAAAAGCGCCATTATG 59.078 47.619 2.29 0.00 0.00 1.90
4148 5049 4.357947 TCAGGTGCCGTGTCGAGC 62.358 66.667 0.00 0.00 0.00 5.03
4166 5067 3.985410 CCAATCATGGGTGGACAGT 57.015 52.632 9.34 0.00 43.51 3.55
4177 5078 1.066143 GGTGGACAGTGGACACTATGG 60.066 57.143 15.97 0.00 40.20 2.74
4191 5092 1.762957 ACTATGGAGTTGGACCATCGG 59.237 52.381 0.00 0.00 45.46 4.18
4214 5115 0.033228 GGATGGTGCAGGATCTCTCG 59.967 60.000 0.00 0.00 0.00 4.04
4220 5125 1.323271 TGCAGGATCTCTCGGTGTCC 61.323 60.000 0.00 0.00 0.00 4.02
4221 5126 2.022240 GCAGGATCTCTCGGTGTCCC 62.022 65.000 0.00 0.00 0.00 4.46
4247 5152 7.667575 AACTCTGAATCTGGATGTACTATGT 57.332 36.000 0.00 0.00 0.00 2.29
4248 5153 7.048629 ACTCTGAATCTGGATGTACTATGTG 57.951 40.000 0.00 0.00 0.00 3.21
4271 5179 2.290323 GCTAGTGGAATGGTGAGGTGTT 60.290 50.000 0.00 0.00 0.00 3.32
4274 5182 1.880027 GTGGAATGGTGAGGTGTTGTC 59.120 52.381 0.00 0.00 0.00 3.18
4282 5190 0.031043 TGAGGTGTTGTCGTGGTACG 59.969 55.000 0.00 0.00 44.19 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.009010 GCTTTGTCACAAAATCTCCAAGAGA 59.991 40.000 4.13 0.00 43.20 3.10
10 11 4.038402 AGGCTTTGTCACAAAATCTCCAAG 59.962 41.667 4.13 0.00 0.00 3.61
13 14 3.569701 TGAGGCTTTGTCACAAAATCTCC 59.430 43.478 20.81 12.99 0.00 3.71
14 15 4.836125 TGAGGCTTTGTCACAAAATCTC 57.164 40.909 18.55 18.55 0.00 2.75
41 43 4.281941 TCGGCAAATGCTAGTATCTCATCT 59.718 41.667 5.25 0.00 41.70 2.90
63 65 7.254227 TGTAAACATTCATAAGCCGGTATTC 57.746 36.000 1.90 0.00 0.00 1.75
64 66 7.817418 ATGTAAACATTCATAAGCCGGTATT 57.183 32.000 1.90 0.58 31.37 1.89
66 68 7.633193 AAATGTAAACATTCATAAGCCGGTA 57.367 32.000 8.70 0.00 45.06 4.02
67 69 6.524101 AAATGTAAACATTCATAAGCCGGT 57.476 33.333 8.70 0.00 45.06 5.28
68 70 8.967218 CATAAAATGTAAACATTCATAAGCCGG 58.033 33.333 8.70 0.00 45.06 6.13
98 100 5.757850 ATGGCGTCCTAATTTCTCATTTC 57.242 39.130 0.00 0.00 0.00 2.17
106 108 5.529800 GTGTACCATAATGGCGTCCTAATTT 59.470 40.000 0.00 0.00 42.67 1.82
109 111 3.707611 AGTGTACCATAATGGCGTCCTAA 59.292 43.478 0.00 0.00 42.67 2.69
115 117 3.442273 ACCAAAAGTGTACCATAATGGCG 59.558 43.478 0.00 0.00 42.67 5.69
128 130 8.776376 ATGCCTTTTAAATCATACCAAAAGTG 57.224 30.769 0.00 0.00 36.63 3.16
132 134 8.986991 ACCATATGCCTTTTAAATCATACCAAA 58.013 29.630 0.00 0.00 0.00 3.28
133 135 8.546083 ACCATATGCCTTTTAAATCATACCAA 57.454 30.769 0.00 0.00 0.00 3.67
134 136 7.040755 CGACCATATGCCTTTTAAATCATACCA 60.041 37.037 0.00 0.00 0.00 3.25
136 138 7.305474 CCGACCATATGCCTTTTAAATCATAC 58.695 38.462 0.00 0.00 0.00 2.39
138 140 5.243730 CCCGACCATATGCCTTTTAAATCAT 59.756 40.000 0.00 0.00 0.00 2.45
139 141 4.582656 CCCGACCATATGCCTTTTAAATCA 59.417 41.667 0.00 0.00 0.00 2.57
140 142 4.583073 ACCCGACCATATGCCTTTTAAATC 59.417 41.667 0.00 0.00 0.00 2.17
141 143 4.340950 CACCCGACCATATGCCTTTTAAAT 59.659 41.667 0.00 0.00 0.00 1.40
142 144 3.697045 CACCCGACCATATGCCTTTTAAA 59.303 43.478 0.00 0.00 0.00 1.52
144 146 2.422235 CCACCCGACCATATGCCTTTTA 60.422 50.000 0.00 0.00 0.00 1.52
145 147 1.684869 CCACCCGACCATATGCCTTTT 60.685 52.381 0.00 0.00 0.00 2.27
146 148 0.106719 CCACCCGACCATATGCCTTT 60.107 55.000 0.00 0.00 0.00 3.11
161 164 3.553922 CCTCGAGATAGCTCAATTCCACC 60.554 52.174 15.71 0.00 41.36 4.61
198 201 9.333724 GGATTCAAAATTATGATGAAAAGCCAT 57.666 29.630 0.00 0.00 36.72 4.40
220 223 5.843969 ACCACCCTCATAAAAACAAAGGATT 59.156 36.000 0.00 0.00 0.00 3.01
222 225 4.810345 ACCACCCTCATAAAAACAAAGGA 58.190 39.130 0.00 0.00 0.00 3.36
233 357 0.963355 GCCGCAAAACCACCCTCATA 60.963 55.000 0.00 0.00 0.00 2.15
234 358 2.275380 GCCGCAAAACCACCCTCAT 61.275 57.895 0.00 0.00 0.00 2.90
236 360 4.038080 CGCCGCAAAACCACCCTC 62.038 66.667 0.00 0.00 0.00 4.30
237 361 4.572571 TCGCCGCAAAACCACCCT 62.573 61.111 0.00 0.00 0.00 4.34
238 362 4.337060 GTCGCCGCAAAACCACCC 62.337 66.667 0.00 0.00 0.00 4.61
239 363 4.337060 GGTCGCCGCAAAACCACC 62.337 66.667 2.49 0.00 33.11 4.61
250 374 3.075884 TGTATAACACCAAAAGGTCGCC 58.924 45.455 0.00 0.00 0.00 5.54
252 376 5.182380 ACCATTGTATAACACCAAAAGGTCG 59.818 40.000 0.00 0.00 31.43 4.79
293 417 2.350522 CTTTGTCTCCCTTGATGGACG 58.649 52.381 0.00 0.00 38.35 4.79
294 418 2.087646 GCTTTGTCTCCCTTGATGGAC 58.912 52.381 0.00 0.00 38.35 4.02
295 419 1.004745 GGCTTTGTCTCCCTTGATGGA 59.995 52.381 0.00 0.00 38.35 3.41
301 425 1.053424 TACACGGCTTTGTCTCCCTT 58.947 50.000 0.00 0.00 0.00 3.95
316 440 4.321304 CCAGGTCCTCGATGTATGATACAC 60.321 50.000 7.55 1.74 42.23 2.90
328 452 3.311110 GTGGTGCCAGGTCCTCGA 61.311 66.667 0.00 0.00 0.00 4.04
336 460 2.562912 GCATTGTCGTGGTGCCAG 59.437 61.111 0.00 0.00 32.88 4.85
346 470 1.580845 AAGTGCTCGCTGGCATTGTC 61.581 55.000 3.92 0.00 44.34 3.18
350 474 2.344535 AAAAAGTGCTCGCTGGCAT 58.655 47.368 3.92 0.00 44.34 4.40
379 503 5.544738 AATCGAATTTAATGATTTGCGCG 57.455 34.783 0.00 0.00 0.00 6.86
411 535 1.299541 CAAGCGACACAAGGTGAAGT 58.700 50.000 2.98 0.00 36.96 3.01
414 538 0.813610 CCACAAGCGACACAAGGTGA 60.814 55.000 2.98 0.00 36.96 4.02
419 543 1.528076 ATGCCCACAAGCGACACAA 60.528 52.632 0.00 0.00 34.65 3.33
442 567 1.779569 AGTTTTCGTACTGCTCGTGG 58.220 50.000 0.00 0.00 0.00 4.94
455 580 1.535896 GGAGCGAACCCTGAAGTTTTC 59.464 52.381 0.00 0.00 0.00 2.29
484 609 7.462109 TTTTGTGTGTGAATTAACAAGCATC 57.538 32.000 0.00 0.00 34.28 3.91
510 635 2.288395 CGAGCCAACCTTCAAGCATTTT 60.288 45.455 0.00 0.00 0.00 1.82
511 636 1.270550 CGAGCCAACCTTCAAGCATTT 59.729 47.619 0.00 0.00 0.00 2.32
523 752 2.508663 GCCTACCGTCGAGCCAAC 60.509 66.667 0.00 0.00 0.00 3.77
525 754 3.449227 CTGCCTACCGTCGAGCCA 61.449 66.667 0.00 0.00 0.00 4.75
529 758 2.992689 TTGCCTGCCTACCGTCGA 60.993 61.111 0.00 0.00 0.00 4.20
533 762 0.179045 ATTAGCTTGCCTGCCTACCG 60.179 55.000 0.00 0.00 0.00 4.02
535 764 1.221414 CGATTAGCTTGCCTGCCTAC 58.779 55.000 0.00 0.00 0.00 3.18
545 774 0.103208 CTCTCGCCACCGATTAGCTT 59.897 55.000 0.00 0.00 43.47 3.74
550 779 1.742768 GGATCTCTCGCCACCGATT 59.257 57.895 0.00 0.00 43.47 3.34
947 1243 0.179081 GGTCGATCAAGGTGGGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
976 1272 4.890306 GAGAGGGAGGGAGGGGGC 62.890 77.778 0.00 0.00 0.00 5.80
977 1273 3.368501 TGAGAGGGAGGGAGGGGG 61.369 72.222 0.00 0.00 0.00 5.40
978 1274 2.041405 GTGAGAGGGAGGGAGGGG 60.041 72.222 0.00 0.00 0.00 4.79
979 1275 2.041405 GGTGAGAGGGAGGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
980 1276 2.443016 CGGTGAGAGGGAGGGAGG 60.443 72.222 0.00 0.00 0.00 4.30
1203 1510 1.631071 CCCCCTCCTCCTGCTTCTTC 61.631 65.000 0.00 0.00 0.00 2.87
1390 1697 1.578206 GGCTTGCCGTTCTTGTCCTC 61.578 60.000 0.00 0.00 0.00 3.71
1486 1793 4.554036 GGCATGGAGGGGTCGAGC 62.554 72.222 5.93 5.93 0.00 5.03
1487 1794 4.227134 CGGCATGGAGGGGTCGAG 62.227 72.222 0.00 0.00 33.12 4.04
1495 1802 3.842923 AGAGACGGCGGCATGGAG 61.843 66.667 18.30 0.00 0.00 3.86
1498 1805 4.827087 AGCAGAGACGGCGGCATG 62.827 66.667 18.30 15.17 36.08 4.06
1508 1815 2.999485 GCGAGACCTGCAGCAGAGA 61.999 63.158 24.90 0.00 32.44 3.10
1509 1816 2.508887 GCGAGACCTGCAGCAGAG 60.509 66.667 24.90 15.80 32.44 3.35
1510 1817 2.993840 AGCGAGACCTGCAGCAGA 60.994 61.111 24.90 0.00 32.44 4.26
1512 1819 3.305516 TCAGCGAGACCTGCAGCA 61.306 61.111 8.66 0.00 32.87 4.41
1513 1820 2.813042 GTCAGCGAGACCTGCAGC 60.813 66.667 8.66 0.00 41.56 5.25
1521 1828 2.539750 CGATCGATTTCAGTCAGCGAGA 60.540 50.000 10.26 0.00 34.25 4.04
1542 1852 1.227205 CGAGACCTGCAGCCAGATC 60.227 63.158 8.66 0.11 41.77 2.75
1543 1853 2.898738 CGAGACCTGCAGCCAGAT 59.101 61.111 8.66 0.00 41.77 2.90
1544 1854 4.074526 GCGAGACCTGCAGCCAGA 62.075 66.667 8.66 0.00 41.77 3.86
1545 1855 4.079850 AGCGAGACCTGCAGCCAG 62.080 66.667 8.66 0.00 38.85 4.85
1605 1915 2.435059 GAGCAGACGCCCTTGACC 60.435 66.667 0.00 0.00 39.83 4.02
1645 1955 6.127814 GCAAATTCATCATCTCTGTGAAGGAA 60.128 38.462 0.00 0.00 35.56 3.36
1649 1959 6.769134 ATGCAAATTCATCATCTCTGTGAA 57.231 33.333 0.00 0.00 36.42 3.18
1652 1962 7.339721 AGAAGAATGCAAATTCATCATCTCTGT 59.660 33.333 7.73 0.00 32.49 3.41
1662 1972 6.713903 AGACTGAAGAGAAGAATGCAAATTCA 59.286 34.615 10.41 3.54 33.16 2.57
1666 1976 7.445121 TCTAAGACTGAAGAGAAGAATGCAAA 58.555 34.615 0.00 0.00 0.00 3.68
1668 1978 6.596309 TCTAAGACTGAAGAGAAGAATGCA 57.404 37.500 0.00 0.00 0.00 3.96
1669 1979 6.870965 TGTTCTAAGACTGAAGAGAAGAATGC 59.129 38.462 0.00 0.00 0.00 3.56
1670 1980 8.824159 TTGTTCTAAGACTGAAGAGAAGAATG 57.176 34.615 0.00 0.00 29.25 2.67
1671 1981 9.651913 GATTGTTCTAAGACTGAAGAGAAGAAT 57.348 33.333 5.78 5.78 41.78 2.40
1672 1982 8.865090 AGATTGTTCTAAGACTGAAGAGAAGAA 58.135 33.333 0.00 0.00 36.15 2.52
1674 1984 8.303156 TCAGATTGTTCTAAGACTGAAGAGAAG 58.697 37.037 0.00 0.00 32.66 2.85
1677 1987 8.824159 TTTCAGATTGTTCTAAGACTGAAGAG 57.176 34.615 0.00 0.00 42.44 2.85
1678 1988 9.784531 ATTTTCAGATTGTTCTAAGACTGAAGA 57.215 29.630 0.00 0.00 42.44 2.87
1704 2015 4.171005 CGAGCACCGTTAGTCTGAATAAA 58.829 43.478 0.00 0.00 0.00 1.40
1716 2027 0.390124 TAACTGAACCGAGCACCGTT 59.610 50.000 0.00 0.00 36.31 4.44
1718 2029 1.068474 CTTAACTGAACCGAGCACCG 58.932 55.000 0.00 0.00 38.18 4.94
1719 2030 2.165319 ACTTAACTGAACCGAGCACC 57.835 50.000 0.00 0.00 0.00 5.01
1720 2031 3.128349 TGAACTTAACTGAACCGAGCAC 58.872 45.455 0.00 0.00 0.00 4.40
1721 2032 3.390135 CTGAACTTAACTGAACCGAGCA 58.610 45.455 0.00 0.00 0.00 4.26
1722 2033 2.737252 CCTGAACTTAACTGAACCGAGC 59.263 50.000 0.00 0.00 0.00 5.03
1723 2034 4.252971 TCCTGAACTTAACTGAACCGAG 57.747 45.455 0.00 0.00 0.00 4.63
1724 2035 4.884668 ATCCTGAACTTAACTGAACCGA 57.115 40.909 0.00 0.00 0.00 4.69
1725 2036 5.941948 AAATCCTGAACTTAACTGAACCG 57.058 39.130 0.00 0.00 0.00 4.44
1726 2037 6.567891 CGGAAAATCCTGAACTTAACTGAACC 60.568 42.308 0.00 0.00 33.30 3.62
1735 2046 2.863809 ACTGCGGAAAATCCTGAACTT 58.136 42.857 0.00 0.00 33.30 2.66
1749 2060 2.099141 TCCTGATTTCTGAACTGCGG 57.901 50.000 0.00 0.00 0.00 5.69
1750 2061 2.283617 CGATCCTGATTTCTGAACTGCG 59.716 50.000 0.00 0.00 0.00 5.18
1779 2090 6.421801 GGCACAGTTCGTCTAACTTAAAGTAA 59.578 38.462 0.00 0.00 46.61 2.24
1781 2092 4.748600 GGCACAGTTCGTCTAACTTAAAGT 59.251 41.667 0.00 0.00 46.61 2.66
1786 2097 2.902705 TGGCACAGTTCGTCTAACTT 57.097 45.000 0.00 0.00 46.61 2.66
1787 2098 6.091875 GCATTTGGCACAGTTCGTCTAACT 62.092 45.833 0.00 0.00 45.63 2.24
1788 2099 3.810373 CATTTGGCACAGTTCGTCTAAC 58.190 45.455 0.00 0.00 42.39 2.34
1789 2100 2.225491 GCATTTGGCACAGTTCGTCTAA 59.775 45.455 0.00 0.00 42.39 2.10
1791 2102 0.593128 GCATTTGGCACAGTTCGTCT 59.407 50.000 0.00 0.00 42.39 4.18
1792 2103 3.012940 TGGCATTTGGCACAGTTCGTC 62.013 52.381 2.26 0.00 46.12 4.20
1794 2105 1.659233 TGGCATTTGGCACAGTTCG 59.341 52.632 2.26 0.00 46.12 3.95
1802 2113 2.931969 GCACTAAAGAATGGCATTTGGC 59.068 45.455 14.93 1.50 43.74 4.52
1803 2114 4.191033 TGCACTAAAGAATGGCATTTGG 57.809 40.909 14.93 4.04 0.00 3.28
1805 2122 6.040209 TGATTGCACTAAAGAATGGCATTT 57.960 33.333 14.93 1.72 34.03 2.32
1820 2137 7.358683 GCAGAGTACAAAAGAAATTGATTGCAC 60.359 37.037 0.00 0.00 34.38 4.57
1831 2149 9.507329 AGAAATCTATTGCAGAGTACAAAAGAA 57.493 29.630 0.00 0.00 36.48 2.52
1834 2152 8.869897 CGTAGAAATCTATTGCAGAGTACAAAA 58.130 33.333 0.00 0.00 36.48 2.44
1835 2153 7.010183 GCGTAGAAATCTATTGCAGAGTACAAA 59.990 37.037 10.80 0.00 36.48 2.83
1838 2156 6.143118 CAGCGTAGAAATCTATTGCAGAGTAC 59.857 42.308 15.50 0.00 36.48 2.73
1840 2158 5.046529 CAGCGTAGAAATCTATTGCAGAGT 58.953 41.667 15.50 0.00 36.48 3.24
1850 2168 2.751166 ACAGCACAGCGTAGAAATCT 57.249 45.000 0.00 0.00 0.00 2.40
1856 2174 2.411547 GCAACTAAACAGCACAGCGTAG 60.412 50.000 0.00 0.00 0.00 3.51
1857 2175 1.529438 GCAACTAAACAGCACAGCGTA 59.471 47.619 0.00 0.00 0.00 4.42
1859 2198 0.307453 TGCAACTAAACAGCACAGCG 59.693 50.000 0.00 0.00 0.00 5.18
1861 2200 3.568538 GGAATGCAACTAAACAGCACAG 58.431 45.455 0.00 0.00 0.00 3.66
1863 2202 2.352715 GGGGAATGCAACTAAACAGCAC 60.353 50.000 0.00 0.00 0.00 4.40
1865 2204 2.094545 CAGGGGAATGCAACTAAACAGC 60.095 50.000 0.00 0.00 0.00 4.40
1871 2210 5.665812 AGATAAGTACAGGGGAATGCAACTA 59.334 40.000 0.00 0.00 0.00 2.24
1872 2211 4.475016 AGATAAGTACAGGGGAATGCAACT 59.525 41.667 0.00 0.00 0.00 3.16
1873 2212 4.781934 AGATAAGTACAGGGGAATGCAAC 58.218 43.478 0.00 0.00 0.00 4.17
1880 2219 3.563223 CTTCGGAGATAAGTACAGGGGA 58.437 50.000 0.00 0.00 35.04 4.81
1907 2246 0.319728 TCTGAAGTCTGAGCACCAGC 59.680 55.000 1.69 0.00 42.62 4.85
1908 2247 1.617850 ACTCTGAAGTCTGAGCACCAG 59.382 52.381 13.38 0.22 43.18 4.00
1909 2248 1.709578 ACTCTGAAGTCTGAGCACCA 58.290 50.000 13.38 0.00 43.18 4.17
1919 2419 4.262079 CCTTAACTGAACCGACTCTGAAGT 60.262 45.833 0.00 0.00 38.88 3.01
1939 2439 2.573462 TCTAGATGGTCTGCAAAGCCTT 59.427 45.455 0.00 0.00 0.00 4.35
1943 2443 5.426504 ACAGATTCTAGATGGTCTGCAAAG 58.573 41.667 21.15 6.62 41.28 2.77
1944 2444 5.426689 ACAGATTCTAGATGGTCTGCAAA 57.573 39.130 21.15 0.00 41.28 3.68
1981 2481 9.884465 GTTTTAGTAAATGGTGATGCAGATATC 57.116 33.333 0.00 0.00 0.00 1.63
1994 2494 7.278868 CCTGAGCTGACTAGTTTTAGTAAATGG 59.721 40.741 0.00 0.00 40.21 3.16
2031 2531 5.598005 TGGATTCCAGTGAACAAAGAACAAT 59.402 36.000 0.00 0.00 32.13 2.71
2036 2536 4.984295 TCATGGATTCCAGTGAACAAAGA 58.016 39.130 11.78 0.00 36.75 2.52
2037 2537 5.710513 TTCATGGATTCCAGTGAACAAAG 57.289 39.130 18.62 1.76 36.75 2.77
2041 2541 8.689972 AGATAAAATTCATGGATTCCAGTGAAC 58.310 33.333 22.10 13.79 36.75 3.18
2075 2575 4.953667 TGCAATGCCAACTTGTAAAATCA 58.046 34.783 1.53 0.00 0.00 2.57
2111 2924 7.393216 ACACTAGCAGATTTTTCTTCAGAGAT 58.607 34.615 0.00 0.00 0.00 2.75
2120 2933 6.305693 ACACTGAACACTAGCAGATTTTTC 57.694 37.500 0.00 0.00 36.07 2.29
2122 2935 5.822519 TGAACACTGAACACTAGCAGATTTT 59.177 36.000 0.00 0.00 36.07 1.82
2133 2947 2.128035 CCGACTCTGAACACTGAACAC 58.872 52.381 0.00 0.00 0.00 3.32
2141 2955 2.429250 TGAACTGAACCGACTCTGAACA 59.571 45.455 0.00 0.00 0.00 3.18
2236 3059 6.867519 TCCAGTCTTAGTAAATGGTGATCA 57.132 37.500 0.00 0.00 32.68 2.92
2253 3076 3.323115 TGTAGCCATGATGAGATCCAGTC 59.677 47.826 0.00 0.00 0.00 3.51
2277 3100 6.699575 AACATGCTTAGTAAATGGTGATCC 57.300 37.500 0.00 0.00 0.00 3.36
2278 3101 7.538575 ACAAACATGCTTAGTAAATGGTGATC 58.461 34.615 0.00 0.00 0.00 2.92
2279 3102 7.466746 ACAAACATGCTTAGTAAATGGTGAT 57.533 32.000 0.00 0.00 0.00 3.06
2281 3104 6.922957 ACAACAAACATGCTTAGTAAATGGTG 59.077 34.615 0.00 0.00 0.00 4.17
2282 3105 7.049799 ACAACAAACATGCTTAGTAAATGGT 57.950 32.000 0.00 0.00 0.00 3.55
2283 3106 7.945033 AACAACAAACATGCTTAGTAAATGG 57.055 32.000 0.00 0.00 0.00 3.16
2284 3107 8.816144 ACAAACAACAAACATGCTTAGTAAATG 58.184 29.630 0.00 0.00 0.00 2.32
2285 3108 8.940768 ACAAACAACAAACATGCTTAGTAAAT 57.059 26.923 0.00 0.00 0.00 1.40
2288 3111 6.095580 TGGACAAACAACAAACATGCTTAGTA 59.904 34.615 0.00 0.00 0.00 1.82
2289 3112 5.105554 TGGACAAACAACAAACATGCTTAGT 60.106 36.000 0.00 0.00 0.00 2.24
2290 3113 5.347342 TGGACAAACAACAAACATGCTTAG 58.653 37.500 0.00 0.00 0.00 2.18
2291 3114 5.330455 TGGACAAACAACAAACATGCTTA 57.670 34.783 0.00 0.00 0.00 3.09
2292 3115 4.199432 TGGACAAACAACAAACATGCTT 57.801 36.364 0.00 0.00 0.00 3.91
2427 3265 3.364549 CTGAATGCTTTAACCATGGGGA 58.635 45.455 18.09 0.00 38.05 4.81
2441 3279 4.096833 TGTGATAGGTGAATTGCTGAATGC 59.903 41.667 0.00 0.00 43.25 3.56
2456 3294 3.003394 TGGCCATCAGTTTGTGATAGG 57.997 47.619 0.00 0.00 44.73 2.57
2458 3296 4.032960 AGTTGGCCATCAGTTTGTGATA 57.967 40.909 16.12 0.00 44.73 2.15
2489 3327 3.146618 CTGCAAGCAATTGATGAGGTC 57.853 47.619 10.34 0.00 0.00 3.85
2684 3525 4.549458 CACAAGGGTTCACACATTGATTC 58.451 43.478 0.00 0.00 32.84 2.52
2688 3530 1.269726 GGCACAAGGGTTCACACATTG 60.270 52.381 0.00 0.00 0.00 2.82
2708 3551 0.037975 GGCCATTGAACTGCACAAGG 60.038 55.000 0.00 0.00 0.00 3.61
2750 3593 3.007920 AGAGAGCTGCTGGTGGGG 61.008 66.667 7.01 0.00 0.00 4.96
2796 3639 0.825840 ATGGAGGCTACGAGAGAGGC 60.826 60.000 0.00 0.00 39.71 4.70
2797 3640 0.958091 CATGGAGGCTACGAGAGAGG 59.042 60.000 0.00 0.00 0.00 3.69
2798 3641 1.879380 CTCATGGAGGCTACGAGAGAG 59.121 57.143 11.63 3.28 0.00 3.20
2840 3685 3.063997 GTCTGTCACAAGAAACACACTGG 59.936 47.826 0.00 0.00 0.00 4.00
2843 3688 4.003519 GTGTCTGTCACAAGAAACACAC 57.996 45.455 7.28 0.00 45.51 3.82
2869 3714 1.336440 TGCAACCAAACAAGATGACGG 59.664 47.619 0.00 0.00 0.00 4.79
2898 3743 0.389948 AACTCCTGATGTCCGTTCGC 60.390 55.000 0.00 0.00 0.00 4.70
2899 3744 1.726791 CAAACTCCTGATGTCCGTTCG 59.273 52.381 0.00 0.00 0.00 3.95
2900 3745 2.076863 CCAAACTCCTGATGTCCGTTC 58.923 52.381 0.00 0.00 0.00 3.95
2901 3746 1.271379 CCCAAACTCCTGATGTCCGTT 60.271 52.381 0.00 0.00 0.00 4.44
2903 3748 0.613260 TCCCAAACTCCTGATGTCCG 59.387 55.000 0.00 0.00 0.00 4.79
2904 3749 2.305927 TCTTCCCAAACTCCTGATGTCC 59.694 50.000 0.00 0.00 0.00 4.02
2905 3750 3.703001 TCTTCCCAAACTCCTGATGTC 57.297 47.619 0.00 0.00 0.00 3.06
2957 3802 1.299468 CCTGCTGATCGCGTAGTCC 60.299 63.158 5.77 0.00 43.27 3.85
2966 3811 0.689080 TGGTCTCCTCCCTGCTGATC 60.689 60.000 0.00 0.00 0.00 2.92
2996 3841 3.706594 TGGTCTGGATGTACATCTTCTCC 59.293 47.826 29.87 25.03 37.92 3.71
3053 3898 2.262423 AGGTGTTGTCCTTCTTCAGC 57.738 50.000 0.00 0.00 33.52 4.26
3074 3919 0.320334 TCAGCCCACACATGTACACG 60.320 55.000 0.00 0.00 0.00 4.49
3089 3934 0.750911 CCTTCTCCATGCCCTTCAGC 60.751 60.000 0.00 0.00 0.00 4.26
3132 3977 1.541588 GGTACCTTCTTTTGCAGCCAG 59.458 52.381 4.06 0.00 0.00 4.85
3138 3983 3.317150 GCATTGTGGTACCTTCTTTTGC 58.683 45.455 14.36 10.81 0.00 3.68
3152 3997 5.107760 CCAAAATTCAGAAGAACGCATTGTG 60.108 40.000 0.00 0.00 36.39 3.33
3160 4005 6.908870 AAACAAGCCAAAATTCAGAAGAAC 57.091 33.333 0.00 0.00 36.39 3.01
3199 4069 8.764287 CAACCCAAAATTCAAGAATAGTTGAAC 58.236 33.333 15.37 0.00 46.53 3.18
3208 4078 7.067981 CCCAAAATTCAACCCAAAATTCAAGAA 59.932 33.333 0.00 0.00 0.00 2.52
3210 4080 6.320926 ACCCAAAATTCAACCCAAAATTCAAG 59.679 34.615 0.00 0.00 0.00 3.02
3212 4082 5.760131 ACCCAAAATTCAACCCAAAATTCA 58.240 33.333 0.00 0.00 0.00 2.57
3214 4084 6.190587 TCAACCCAAAATTCAACCCAAAATT 58.809 32.000 0.00 0.00 0.00 1.82
3215 4085 5.760131 TCAACCCAAAATTCAACCCAAAAT 58.240 33.333 0.00 0.00 0.00 1.82
3216 4086 5.179452 TCAACCCAAAATTCAACCCAAAA 57.821 34.783 0.00 0.00 0.00 2.44
3217 4087 4.844349 TCAACCCAAAATTCAACCCAAA 57.156 36.364 0.00 0.00 0.00 3.28
3218 4088 4.844349 TTCAACCCAAAATTCAACCCAA 57.156 36.364 0.00 0.00 0.00 4.12
3219 4089 5.379706 AATTCAACCCAAAATTCAACCCA 57.620 34.783 0.00 0.00 0.00 4.51
3220 4090 6.460814 CCAAAATTCAACCCAAAATTCAACCC 60.461 38.462 0.00 0.00 0.00 4.11
3224 4094 5.760131 ACCCAAAATTCAACCCAAAATTCA 58.240 33.333 0.00 0.00 0.00 2.57
3225 4095 6.096141 ACAACCCAAAATTCAACCCAAAATTC 59.904 34.615 0.00 0.00 0.00 2.17
3226 4096 5.954752 ACAACCCAAAATTCAACCCAAAATT 59.045 32.000 0.00 0.00 0.00 1.82
3227 4097 5.514169 ACAACCCAAAATTCAACCCAAAAT 58.486 33.333 0.00 0.00 0.00 1.82
3228 4098 4.923415 ACAACCCAAAATTCAACCCAAAA 58.077 34.783 0.00 0.00 0.00 2.44
3229 4099 4.576330 ACAACCCAAAATTCAACCCAAA 57.424 36.364 0.00 0.00 0.00 3.28
3230 4100 4.576330 AACAACCCAAAATTCAACCCAA 57.424 36.364 0.00 0.00 0.00 4.12
3231 4101 4.019321 TCAAACAACCCAAAATTCAACCCA 60.019 37.500 0.00 0.00 0.00 4.51
3232 4102 4.518249 TCAAACAACCCAAAATTCAACCC 58.482 39.130 0.00 0.00 0.00 4.11
3233 4103 6.094742 ACATTCAAACAACCCAAAATTCAACC 59.905 34.615 0.00 0.00 0.00 3.77
3234 4104 7.082700 ACATTCAAACAACCCAAAATTCAAC 57.917 32.000 0.00 0.00 0.00 3.18
3235 4105 7.693969 AACATTCAAACAACCCAAAATTCAA 57.306 28.000 0.00 0.00 0.00 2.69
3245 4115 4.698304 TCGATCCCTAACATTCAAACAACC 59.302 41.667 0.00 0.00 0.00 3.77
3248 4118 4.935205 CAGTCGATCCCTAACATTCAAACA 59.065 41.667 0.00 0.00 0.00 2.83
3253 4123 4.608948 ATCCAGTCGATCCCTAACATTC 57.391 45.455 0.00 0.00 0.00 2.67
3254 4124 5.394738 TCTATCCAGTCGATCCCTAACATT 58.605 41.667 0.00 0.00 31.92 2.71
3258 4131 4.726035 ACTCTATCCAGTCGATCCCTAA 57.274 45.455 0.00 0.00 31.92 2.69
3278 4151 4.381411 ACTTCTTCAGTTGCTTCCTGTAC 58.619 43.478 0.00 0.00 27.32 2.90
3376 4260 2.852413 TCAATCTTCTTCGATCGAACGC 59.148 45.455 25.96 0.00 0.00 4.84
3380 4264 5.205565 CGTACATCAATCTTCTTCGATCGA 58.794 41.667 15.15 15.15 0.00 3.59
3433 4317 7.031226 ACCAAGATGAAACATATCGGAAATG 57.969 36.000 0.00 0.00 0.00 2.32
3445 4329 7.598869 GGGAGTTGAAATAAACCAAGATGAAAC 59.401 37.037 0.00 0.00 0.00 2.78
3492 4377 4.986054 TGGTAAACTTTTAGCAGAGGGA 57.014 40.909 9.08 0.00 43.69 4.20
3619 4507 0.111310 GCCGCGTTTTGCATGTTTTC 60.111 50.000 4.92 0.00 46.97 2.29
3635 4530 3.677121 ACTATGTATACTAGACGTCGCCG 59.323 47.826 10.46 5.10 40.83 6.46
3642 4537 9.058174 ACATCACAGACACTATGTATACTAGAC 57.942 37.037 4.17 0.00 30.99 2.59
3656 4551 4.872691 AGCTAATAGCAACATCACAGACAC 59.127 41.667 15.28 0.00 45.56 3.67
3658 4553 6.253746 CAAAGCTAATAGCAACATCACAGAC 58.746 40.000 15.28 0.00 45.56 3.51
3662 4557 5.567138 ACCAAAGCTAATAGCAACATCAC 57.433 39.130 15.28 0.00 45.56 3.06
3722 4617 1.137872 AGCTGCTTAGGTTCTGATCCG 59.862 52.381 0.00 0.00 0.00 4.18
3737 4632 2.352034 CTCAGTCATGTCATGAAGCTGC 59.648 50.000 20.85 9.45 41.69 5.25
3794 4690 2.038952 CCATGTTCTTGTGAGAGTGGGA 59.961 50.000 0.00 0.00 31.99 4.37
3795 4691 2.038952 TCCATGTTCTTGTGAGAGTGGG 59.961 50.000 0.00 0.00 34.31 4.61
3796 4692 3.407424 TCCATGTTCTTGTGAGAGTGG 57.593 47.619 0.00 0.00 34.59 4.00
3797 4693 4.576053 TGTTTCCATGTTCTTGTGAGAGTG 59.424 41.667 0.00 0.00 32.44 3.51
3798 4694 4.780815 TGTTTCCATGTTCTTGTGAGAGT 58.219 39.130 0.00 0.00 32.44 3.24
3799 4695 5.756195 TTGTTTCCATGTTCTTGTGAGAG 57.244 39.130 0.00 0.00 32.44 3.20
3834 4730 4.466828 CAGCAAATAAGTTCTCCAACACG 58.533 43.478 0.00 0.00 34.60 4.49
3856 4752 0.317519 GGTGTTAACAAGTGCGGTGC 60.318 55.000 10.51 0.00 0.00 5.01
3857 4753 0.309612 GGGTGTTAACAAGTGCGGTG 59.690 55.000 10.51 0.00 0.00 4.94
3858 4754 0.107116 TGGGTGTTAACAAGTGCGGT 60.107 50.000 10.51 0.00 0.00 5.68
3859 4755 0.309612 GTGGGTGTTAACAAGTGCGG 59.690 55.000 10.51 0.00 0.00 5.69
3860 4756 0.309612 GGTGGGTGTTAACAAGTGCG 59.690 55.000 10.51 0.00 0.00 5.34
3882 4778 1.895707 GAGCGCTCCATCCATTGGG 60.896 63.158 27.22 0.00 46.45 4.12
3896 4794 1.449246 CTGGGAAAGCAGAGGAGCG 60.449 63.158 0.00 0.00 40.15 5.03
3906 4804 2.289945 CCCTGACTCAAGACTGGGAAAG 60.290 54.545 15.84 0.00 46.20 2.62
3914 4812 0.610687 CCCTGACCCTGACTCAAGAC 59.389 60.000 0.00 0.00 0.00 3.01
3924 4822 1.687612 CAGATGCAACCCTGACCCT 59.312 57.895 8.00 0.00 32.37 4.34
3925 4823 2.048603 GCAGATGCAACCCTGACCC 61.049 63.158 15.48 0.00 41.59 4.46
3967 4868 3.119193 CAGCAACACCACCACCAC 58.881 61.111 0.00 0.00 0.00 4.16
3970 4871 1.666209 AACAGCAGCAACACCACCAC 61.666 55.000 0.00 0.00 0.00 4.16
3976 4877 1.655099 CAACAACAACAGCAGCAACAC 59.345 47.619 0.00 0.00 0.00 3.32
3979 4880 2.335752 CAACAACAACAACAGCAGCAA 58.664 42.857 0.00 0.00 0.00 3.91
3983 4884 1.993542 CAGCAACAACAACAACAGCA 58.006 45.000 0.00 0.00 0.00 4.41
3984 4885 0.646895 GCAGCAACAACAACAACAGC 59.353 50.000 0.00 0.00 0.00 4.40
3985 4886 2.187707 GAGCAGCAACAACAACAACAG 58.812 47.619 0.00 0.00 0.00 3.16
3986 4887 1.135141 GGAGCAGCAACAACAACAACA 60.135 47.619 0.00 0.00 0.00 3.33
3987 4888 1.559831 GGAGCAGCAACAACAACAAC 58.440 50.000 0.00 0.00 0.00 3.32
3991 4892 1.029408 ACACGGAGCAGCAACAACAA 61.029 50.000 0.00 0.00 0.00 2.83
3994 4895 0.534877 ATGACACGGAGCAGCAACAA 60.535 50.000 0.00 0.00 0.00 2.83
4021 4922 0.250901 TCCAGCAGCCTCCAAAAGTC 60.251 55.000 0.00 0.00 0.00 3.01
4077 4978 0.696501 GGTGTTGGTGATAGGTGGGT 59.303 55.000 0.00 0.00 0.00 4.51
4127 5028 2.594962 CGACACGGCACCTGACAAC 61.595 63.158 0.00 0.00 0.00 3.32
4148 5049 1.466856 CACTGTCCACCCATGATTGG 58.533 55.000 6.27 6.27 43.23 3.16
4160 5061 2.180276 ACTCCATAGTGTCCACTGTCC 58.820 52.381 10.15 0.00 42.52 4.02
4161 5062 3.589988 CAACTCCATAGTGTCCACTGTC 58.410 50.000 10.15 0.00 42.52 3.51
4162 5063 2.303022 CCAACTCCATAGTGTCCACTGT 59.697 50.000 10.15 0.28 42.52 3.55
4163 5064 2.567169 TCCAACTCCATAGTGTCCACTG 59.433 50.000 10.15 0.00 42.52 3.66
4164 5065 2.567615 GTCCAACTCCATAGTGTCCACT 59.432 50.000 5.15 5.15 45.02 4.00
4165 5066 2.354805 GGTCCAACTCCATAGTGTCCAC 60.355 54.545 0.00 0.00 35.62 4.02
4166 5067 1.906574 GGTCCAACTCCATAGTGTCCA 59.093 52.381 0.00 0.00 35.62 4.02
4177 5078 1.829222 TCCTTACCGATGGTCCAACTC 59.171 52.381 0.00 0.00 37.09 3.01
4191 5092 2.703007 AGAGATCCTGCACCATCCTTAC 59.297 50.000 0.00 0.00 0.00 2.34
4214 5115 3.077359 CAGATTCAGAGTTTGGGACACC 58.923 50.000 0.00 0.00 39.29 4.16
4220 5125 5.738909 AGTACATCCAGATTCAGAGTTTGG 58.261 41.667 0.00 0.00 0.00 3.28
4221 5126 7.984050 ACATAGTACATCCAGATTCAGAGTTTG 59.016 37.037 0.00 0.00 0.00 2.93
4247 5152 0.108186 CTCACCATTCCACTAGCGCA 60.108 55.000 11.47 0.00 0.00 6.09
4248 5153 0.811616 CCTCACCATTCCACTAGCGC 60.812 60.000 0.00 0.00 0.00 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.