Multiple sequence alignment - TraesCS4A01G472400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G472400 chr4A 100.000 3398 0 0 1 3398 732768923 732772320 0.000000e+00 6276
1 TraesCS4A01G472400 chr4A 79.523 796 119 30 1256 2042 664242003 664241243 8.350000e-146 527
2 TraesCS4A01G472400 chr4A 79.883 343 57 9 1332 1668 732725956 732726292 1.220000e-59 241
3 TraesCS4A01G472400 chr7A 86.303 3205 226 101 290 3398 8371202 8374289 0.000000e+00 3290
4 TraesCS4A01G472400 chr7A 82.130 554 81 10 1254 1807 52682282 52681747 3.090000e-125 459
5 TraesCS4A01G472400 chr7A 80.172 348 51 9 1328 1671 8334753 8335086 9.420000e-61 244
6 TraesCS4A01G472400 chr7A 93.636 110 7 0 6 115 60096207 60096098 7.540000e-37 165
7 TraesCS4A01G472400 chr7D 87.029 2868 221 84 584 3398 7444279 7447048 0.000000e+00 3096
8 TraesCS4A01G472400 chr7D 80.000 795 125 25 1254 2044 49802033 49801269 1.070000e-154 556
9 TraesCS4A01G472400 chr7D 88.202 178 19 2 104 280 47447830 47448006 9.550000e-51 211
10 TraesCS4A01G472400 chr7D 88.202 178 19 2 107 282 490884307 490884130 9.550000e-51 211
11 TraesCS4A01G472400 chr7D 78.698 338 48 15 1328 1644 7371694 7372028 1.600000e-48 204
12 TraesCS4A01G472400 chr7D 80.442 317 14 18 290 587 7443943 7444230 7.440000e-47 198
13 TraesCS4A01G472400 chr7D 86.188 181 23 2 104 282 162824663 162824843 9.620000e-46 195
14 TraesCS4A01G472400 chr7D 95.192 104 5 0 6 109 578990757 578990860 7.540000e-37 165
15 TraesCS4A01G472400 chr4B 78.616 809 134 25 1254 2042 86635530 86636319 1.820000e-137 499
16 TraesCS4A01G472400 chr6D 89.944 179 16 2 107 283 429711741 429711563 2.640000e-56 230
17 TraesCS4A01G472400 chr6D 88.587 184 21 0 3201 3384 4774053 4774236 1.230000e-54 224
18 TraesCS4A01G472400 chr6B 89.130 184 20 0 3201 3384 9003458 9003275 2.640000e-56 230
19 TraesCS4A01G472400 chr1D 89.888 178 15 3 107 282 482827684 482827508 3.410000e-55 226
20 TraesCS4A01G472400 chr1D 95.192 104 5 0 6 109 212428860 212428963 7.540000e-37 165
21 TraesCS4A01G472400 chr6A 88.587 184 21 0 3201 3384 3851679 3851862 1.230000e-54 224
22 TraesCS4A01G472400 chr2A 87.568 185 20 2 107 290 768727226 768727044 9.550000e-51 211
23 TraesCS4A01G472400 chr5A 86.631 187 23 2 107 291 647165191 647165005 4.440000e-49 206
24 TraesCS4A01G472400 chr3B 88.068 176 18 3 107 280 611725864 611726038 4.440000e-49 206
25 TraesCS4A01G472400 chr3B 86.517 178 22 2 107 283 804233914 804233738 9.620000e-46 195
26 TraesCS4A01G472400 chrUn 93.636 110 7 0 6 115 233525276 233525167 7.540000e-37 165
27 TraesCS4A01G472400 chrUn 95.192 104 5 0 6 109 257944104 257944207 7.540000e-37 165
28 TraesCS4A01G472400 chr4D 95.192 104 5 0 6 109 123688953 123689056 7.540000e-37 165
29 TraesCS4A01G472400 chr2D 95.192 104 5 0 6 109 17984361 17984464 7.540000e-37 165
30 TraesCS4A01G472400 chr2D 93.636 110 7 0 6 115 637308714 637308605 7.540000e-37 165
31 TraesCS4A01G472400 chr1B 93.636 110 7 0 6 115 49784932 49784823 7.540000e-37 165
32 TraesCS4A01G472400 chr7B 80.169 237 31 5 1579 1815 649282486 649282706 2.710000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G472400 chr4A 732768923 732772320 3397 False 6276 6276 100.0000 1 3398 1 chr4A.!!$F2 3397
1 TraesCS4A01G472400 chr4A 664241243 664242003 760 True 527 527 79.5230 1256 2042 1 chr4A.!!$R1 786
2 TraesCS4A01G472400 chr7A 8371202 8374289 3087 False 3290 3290 86.3030 290 3398 1 chr7A.!!$F2 3108
3 TraesCS4A01G472400 chr7A 52681747 52682282 535 True 459 459 82.1300 1254 1807 1 chr7A.!!$R1 553
4 TraesCS4A01G472400 chr7D 7443943 7447048 3105 False 1647 3096 83.7355 290 3398 2 chr7D.!!$F5 3108
5 TraesCS4A01G472400 chr7D 49801269 49802033 764 True 556 556 80.0000 1254 2044 1 chr7D.!!$R1 790
6 TraesCS4A01G472400 chr4B 86635530 86636319 789 False 499 499 78.6160 1254 2042 1 chr4B.!!$F1 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.036306 GTTCGGTGGTTCATGGACCT 59.964 55.0 24.02 0.0 40.47 3.85 F
2078 2259 0.108186 CTCACCATTCCACTAGCGCA 60.108 55.0 11.47 0.0 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2299 0.033228 GGATGGTGCAGGATCTCTCG 59.967 60.000 0.0 0.0 0.00 4.04 R
3236 3480 1.274167 ACCTACGTGTACATGTGTGGG 59.726 52.381 29.3 26.3 32.99 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.426112 GGCAGGCTCCGCTTTTGC 62.426 66.667 0.00 0.00 43.23 3.68
31 32 2.400399 CTTTTGCAGCACTGAACATGG 58.600 47.619 0.00 0.00 0.00 3.66
32 33 1.401761 TTTGCAGCACTGAACATGGT 58.598 45.000 0.00 0.00 0.00 3.55
33 34 1.401761 TTGCAGCACTGAACATGGTT 58.598 45.000 0.00 0.00 0.00 3.67
34 35 0.953727 TGCAGCACTGAACATGGTTC 59.046 50.000 0.81 2.25 0.00 3.62
35 36 0.242017 GCAGCACTGAACATGGTTCC 59.758 55.000 0.81 0.00 0.00 3.62
36 37 0.518636 CAGCACTGAACATGGTTCCG 59.481 55.000 6.64 3.21 0.00 4.30
37 38 0.606401 AGCACTGAACATGGTTCCGG 60.606 55.000 0.00 0.00 0.00 5.14
38 39 1.586154 GCACTGAACATGGTTCCGGG 61.586 60.000 0.00 2.90 0.00 5.73
39 40 1.303317 ACTGAACATGGTTCCGGGC 60.303 57.895 0.00 0.00 0.00 6.13
40 41 1.303236 CTGAACATGGTTCCGGGCA 60.303 57.895 0.00 0.00 0.00 5.36
41 42 1.586154 CTGAACATGGTTCCGGGCAC 61.586 60.000 0.00 0.00 0.00 5.01
42 43 1.303317 GAACATGGTTCCGGGCACT 60.303 57.895 0.00 0.00 0.00 4.40
43 44 1.303317 AACATGGTTCCGGGCACTC 60.303 57.895 0.00 0.00 0.00 3.51
44 45 2.063015 AACATGGTTCCGGGCACTCA 62.063 55.000 0.00 0.15 0.00 3.41
45 46 1.303236 CATGGTTCCGGGCACTCAA 60.303 57.895 0.00 0.00 0.00 3.02
46 47 1.002134 ATGGTTCCGGGCACTCAAG 60.002 57.895 0.00 0.00 0.00 3.02
47 48 1.488705 ATGGTTCCGGGCACTCAAGA 61.489 55.000 0.00 0.00 0.00 3.02
48 49 1.299976 GGTTCCGGGCACTCAAGAT 59.700 57.895 0.00 0.00 0.00 2.40
49 50 0.539986 GGTTCCGGGCACTCAAGATA 59.460 55.000 0.00 0.00 0.00 1.98
50 51 1.141053 GGTTCCGGGCACTCAAGATAT 59.859 52.381 0.00 0.00 0.00 1.63
51 52 2.484889 GTTCCGGGCACTCAAGATATC 58.515 52.381 0.00 0.00 0.00 1.63
52 53 0.673985 TCCGGGCACTCAAGATATCG 59.326 55.000 0.00 0.00 0.00 2.92
53 54 0.946221 CCGGGCACTCAAGATATCGC 60.946 60.000 0.00 0.00 0.00 4.58
54 55 1.278172 CGGGCACTCAAGATATCGCG 61.278 60.000 0.00 0.00 0.00 5.87
55 56 0.249489 GGGCACTCAAGATATCGCGT 60.249 55.000 5.77 0.00 0.00 6.01
56 57 1.571919 GGCACTCAAGATATCGCGTT 58.428 50.000 5.77 0.00 0.00 4.84
57 58 1.933853 GGCACTCAAGATATCGCGTTT 59.066 47.619 5.77 0.00 0.00 3.60
58 59 2.285834 GGCACTCAAGATATCGCGTTTG 60.286 50.000 5.77 4.97 0.00 2.93
59 60 2.348666 GCACTCAAGATATCGCGTTTGT 59.651 45.455 5.77 0.00 0.00 2.83
60 61 3.782250 GCACTCAAGATATCGCGTTTGTG 60.782 47.826 5.77 5.59 0.00 3.33
61 62 3.367932 CACTCAAGATATCGCGTTTGTGT 59.632 43.478 5.77 8.58 0.00 3.72
62 63 3.994392 ACTCAAGATATCGCGTTTGTGTT 59.006 39.130 5.77 0.00 0.00 3.32
63 64 4.451096 ACTCAAGATATCGCGTTTGTGTTT 59.549 37.500 5.77 0.00 0.00 2.83
64 65 4.707563 TCAAGATATCGCGTTTGTGTTTG 58.292 39.130 5.77 4.26 0.00 2.93
65 66 3.740044 AGATATCGCGTTTGTGTTTGG 57.260 42.857 5.77 0.00 0.00 3.28
66 67 3.331150 AGATATCGCGTTTGTGTTTGGA 58.669 40.909 5.77 0.00 0.00 3.53
67 68 3.370978 AGATATCGCGTTTGTGTTTGGAG 59.629 43.478 5.77 0.00 0.00 3.86
68 69 1.588674 ATCGCGTTTGTGTTTGGAGA 58.411 45.000 5.77 0.00 0.00 3.71
69 70 0.934496 TCGCGTTTGTGTTTGGAGAG 59.066 50.000 5.77 0.00 0.00 3.20
70 71 0.041312 CGCGTTTGTGTTTGGAGAGG 60.041 55.000 0.00 0.00 0.00 3.69
71 72 0.317854 GCGTTTGTGTTTGGAGAGGC 60.318 55.000 0.00 0.00 0.00 4.70
72 73 0.041312 CGTTTGTGTTTGGAGAGGCG 60.041 55.000 0.00 0.00 0.00 5.52
73 74 1.021968 GTTTGTGTTTGGAGAGGCGT 58.978 50.000 0.00 0.00 0.00 5.68
74 75 2.215196 GTTTGTGTTTGGAGAGGCGTA 58.785 47.619 0.00 0.00 0.00 4.42
75 76 2.163818 TTGTGTTTGGAGAGGCGTAG 57.836 50.000 0.00 0.00 0.00 3.51
76 77 1.334160 TGTGTTTGGAGAGGCGTAGA 58.666 50.000 0.00 0.00 0.00 2.59
77 78 1.899814 TGTGTTTGGAGAGGCGTAGAT 59.100 47.619 0.00 0.00 0.00 1.98
78 79 2.301870 TGTGTTTGGAGAGGCGTAGATT 59.698 45.455 0.00 0.00 0.00 2.40
79 80 2.673368 GTGTTTGGAGAGGCGTAGATTG 59.327 50.000 0.00 0.00 0.00 2.67
80 81 2.301870 TGTTTGGAGAGGCGTAGATTGT 59.698 45.455 0.00 0.00 0.00 2.71
81 82 3.512329 TGTTTGGAGAGGCGTAGATTGTA 59.488 43.478 0.00 0.00 0.00 2.41
82 83 4.113354 GTTTGGAGAGGCGTAGATTGTAG 58.887 47.826 0.00 0.00 0.00 2.74
83 84 3.292492 TGGAGAGGCGTAGATTGTAGA 57.708 47.619 0.00 0.00 0.00 2.59
84 85 3.833732 TGGAGAGGCGTAGATTGTAGAT 58.166 45.455 0.00 0.00 0.00 1.98
85 86 4.215908 TGGAGAGGCGTAGATTGTAGATT 58.784 43.478 0.00 0.00 0.00 2.40
86 87 4.278669 TGGAGAGGCGTAGATTGTAGATTC 59.721 45.833 0.00 0.00 0.00 2.52
87 88 4.321378 GGAGAGGCGTAGATTGTAGATTCC 60.321 50.000 0.00 0.00 0.00 3.01
88 89 4.215908 AGAGGCGTAGATTGTAGATTCCA 58.784 43.478 0.00 0.00 0.00 3.53
89 90 4.279671 AGAGGCGTAGATTGTAGATTCCAG 59.720 45.833 0.00 0.00 0.00 3.86
90 91 3.060602 GGCGTAGATTGTAGATTCCAGC 58.939 50.000 0.00 0.00 0.00 4.85
91 92 3.060602 GCGTAGATTGTAGATTCCAGCC 58.939 50.000 0.00 0.00 0.00 4.85
92 93 3.309388 CGTAGATTGTAGATTCCAGCCG 58.691 50.000 0.00 0.00 0.00 5.52
93 94 3.004419 CGTAGATTGTAGATTCCAGCCGA 59.996 47.826 0.00 0.00 0.00 5.54
94 95 3.742433 AGATTGTAGATTCCAGCCGAG 57.258 47.619 0.00 0.00 0.00 4.63
95 96 3.300388 AGATTGTAGATTCCAGCCGAGA 58.700 45.455 0.00 0.00 0.00 4.04
96 97 3.706594 AGATTGTAGATTCCAGCCGAGAA 59.293 43.478 0.00 0.00 0.00 2.87
97 98 3.526931 TTGTAGATTCCAGCCGAGAAG 57.473 47.619 0.00 0.00 0.00 2.85
98 99 2.735151 TGTAGATTCCAGCCGAGAAGA 58.265 47.619 0.00 0.00 0.00 2.87
99 100 2.427453 TGTAGATTCCAGCCGAGAAGAC 59.573 50.000 0.00 0.00 0.00 3.01
100 101 1.859302 AGATTCCAGCCGAGAAGACT 58.141 50.000 0.00 0.00 0.00 3.24
101 102 3.019799 AGATTCCAGCCGAGAAGACTA 57.980 47.619 0.00 0.00 0.00 2.59
102 103 2.955660 AGATTCCAGCCGAGAAGACTAG 59.044 50.000 0.00 0.00 0.00 2.57
103 104 1.475403 TTCCAGCCGAGAAGACTAGG 58.525 55.000 0.00 0.00 40.96 3.02
104 105 0.624254 TCCAGCCGAGAAGACTAGGA 59.376 55.000 0.00 0.00 40.57 2.94
105 106 1.005569 TCCAGCCGAGAAGACTAGGAA 59.994 52.381 0.00 0.00 40.57 3.36
106 107 1.825474 CCAGCCGAGAAGACTAGGAAA 59.175 52.381 0.00 0.00 40.57 3.13
107 108 2.233922 CCAGCCGAGAAGACTAGGAAAA 59.766 50.000 0.00 0.00 40.57 2.29
108 109 3.516615 CAGCCGAGAAGACTAGGAAAAG 58.483 50.000 0.00 0.00 40.57 2.27
109 110 2.498078 AGCCGAGAAGACTAGGAAAAGG 59.502 50.000 0.00 0.00 40.57 3.11
110 111 2.234168 GCCGAGAAGACTAGGAAAAGGT 59.766 50.000 0.00 0.00 40.57 3.50
111 112 3.676598 GCCGAGAAGACTAGGAAAAGGTC 60.677 52.174 0.00 0.00 40.57 3.85
112 113 3.510360 CCGAGAAGACTAGGAAAAGGTCA 59.490 47.826 0.00 0.00 40.57 4.02
113 114 4.381079 CCGAGAAGACTAGGAAAAGGTCAG 60.381 50.000 0.00 0.00 40.57 3.51
114 115 4.381079 CGAGAAGACTAGGAAAAGGTCAGG 60.381 50.000 0.00 0.00 32.98 3.86
115 116 3.262151 AGAAGACTAGGAAAAGGTCAGGC 59.738 47.826 0.00 0.00 32.98 4.85
116 117 1.909986 AGACTAGGAAAAGGTCAGGCC 59.090 52.381 0.00 0.00 37.58 5.19
117 118 0.613777 ACTAGGAAAAGGTCAGGCCG 59.386 55.000 0.00 0.00 43.70 6.13
118 119 0.107654 CTAGGAAAAGGTCAGGCCGG 60.108 60.000 0.00 0.00 43.70 6.13
119 120 2.193087 TAGGAAAAGGTCAGGCCGGC 62.193 60.000 21.18 21.18 43.70 6.13
120 121 2.034221 GAAAAGGTCAGGCCGGCT 59.966 61.111 28.56 9.77 43.70 5.52
121 122 2.034221 AAAAGGTCAGGCCGGCTC 59.966 61.111 28.56 16.85 43.70 4.70
122 123 3.569200 AAAAGGTCAGGCCGGCTCC 62.569 63.158 28.56 21.94 43.70 4.70
139 140 4.944372 CGGTATGGGAGCGGCGAC 62.944 72.222 12.98 3.05 45.37 5.19
140 141 3.845259 GGTATGGGAGCGGCGACA 61.845 66.667 12.98 3.44 0.00 4.35
141 142 2.279517 GTATGGGAGCGGCGACAG 60.280 66.667 12.98 0.00 0.00 3.51
142 143 4.221422 TATGGGAGCGGCGACAGC 62.221 66.667 12.98 0.00 44.18 4.40
171 172 4.803426 GTCTCGTCCTGGCGGCAG 62.803 72.222 30.63 30.63 0.00 4.85
182 183 3.737172 GCGGCAGCAATGGTCGTT 61.737 61.111 3.18 0.00 44.35 3.85
183 184 2.480555 CGGCAGCAATGGTCGTTC 59.519 61.111 0.00 0.00 0.00 3.95
184 185 2.480555 GGCAGCAATGGTCGTTCG 59.519 61.111 0.00 0.00 0.00 3.95
185 186 2.480555 GCAGCAATGGTCGTTCGG 59.519 61.111 0.00 0.00 0.00 4.30
186 187 2.325082 GCAGCAATGGTCGTTCGGT 61.325 57.895 0.00 0.00 0.00 4.69
187 188 1.497278 CAGCAATGGTCGTTCGGTG 59.503 57.895 0.00 0.00 0.00 4.94
188 189 1.671054 AGCAATGGTCGTTCGGTGG 60.671 57.895 0.00 0.00 0.00 4.61
189 190 1.964373 GCAATGGTCGTTCGGTGGT 60.964 57.895 0.00 0.00 0.00 4.16
190 191 1.512156 GCAATGGTCGTTCGGTGGTT 61.512 55.000 0.00 0.00 0.00 3.67
191 192 0.515564 CAATGGTCGTTCGGTGGTTC 59.484 55.000 0.00 0.00 0.00 3.62
192 193 0.107081 AATGGTCGTTCGGTGGTTCA 59.893 50.000 0.00 0.00 0.00 3.18
193 194 0.323629 ATGGTCGTTCGGTGGTTCAT 59.676 50.000 0.00 0.00 0.00 2.57
194 195 0.601576 TGGTCGTTCGGTGGTTCATG 60.602 55.000 0.00 0.00 0.00 3.07
195 196 1.296056 GGTCGTTCGGTGGTTCATGG 61.296 60.000 0.00 0.00 0.00 3.66
196 197 0.320073 GTCGTTCGGTGGTTCATGGA 60.320 55.000 0.00 0.00 0.00 3.41
197 198 0.320073 TCGTTCGGTGGTTCATGGAC 60.320 55.000 0.00 0.00 0.00 4.02
198 199 1.296056 CGTTCGGTGGTTCATGGACC 61.296 60.000 17.13 17.13 40.23 4.46
199 200 0.036306 GTTCGGTGGTTCATGGACCT 59.964 55.000 24.02 0.00 40.47 3.85
200 201 0.323629 TTCGGTGGTTCATGGACCTC 59.676 55.000 24.02 19.78 40.47 3.85
201 202 1.447838 CGGTGGTTCATGGACCTCG 60.448 63.158 24.02 21.53 40.47 4.63
202 203 1.884075 CGGTGGTTCATGGACCTCGA 61.884 60.000 25.32 5.71 40.47 4.04
203 204 0.541863 GGTGGTTCATGGACCTCGAT 59.458 55.000 24.02 0.00 40.47 3.59
204 205 1.656652 GTGGTTCATGGACCTCGATG 58.343 55.000 24.02 0.00 40.47 3.84
205 206 1.066143 GTGGTTCATGGACCTCGATGT 60.066 52.381 24.02 0.00 40.47 3.06
206 207 2.167693 GTGGTTCATGGACCTCGATGTA 59.832 50.000 24.02 0.00 40.47 2.29
207 208 2.835156 TGGTTCATGGACCTCGATGTAA 59.165 45.455 24.02 0.00 40.47 2.41
208 209 3.454447 TGGTTCATGGACCTCGATGTAAT 59.546 43.478 24.02 0.00 40.47 1.89
209 210 4.080582 TGGTTCATGGACCTCGATGTAATT 60.081 41.667 24.02 0.00 40.47 1.40
210 211 4.881850 GGTTCATGGACCTCGATGTAATTT 59.118 41.667 16.69 0.00 36.73 1.82
211 212 6.053005 GGTTCATGGACCTCGATGTAATTTA 58.947 40.000 16.69 0.00 36.73 1.40
212 213 6.710744 GGTTCATGGACCTCGATGTAATTTAT 59.289 38.462 16.69 0.00 36.73 1.40
213 214 7.876068 GGTTCATGGACCTCGATGTAATTTATA 59.124 37.037 16.69 0.00 36.73 0.98
214 215 9.436957 GTTCATGGACCTCGATGTAATTTATAT 57.563 33.333 0.00 0.00 34.32 0.86
237 238 7.849804 ATTATGTTTGAGATGCTTCGTACTT 57.150 32.000 0.00 0.00 0.00 2.24
238 239 5.786401 ATGTTTGAGATGCTTCGTACTTC 57.214 39.130 0.00 0.00 0.00 3.01
239 240 3.994392 TGTTTGAGATGCTTCGTACTTCC 59.006 43.478 0.00 0.00 0.00 3.46
240 241 2.561733 TGAGATGCTTCGTACTTCCG 57.438 50.000 0.00 0.00 0.00 4.30
241 242 1.134367 TGAGATGCTTCGTACTTCCGG 59.866 52.381 0.00 0.00 0.00 5.14
242 243 1.134560 GAGATGCTTCGTACTTCCGGT 59.865 52.381 0.00 0.00 0.00 5.28
243 244 1.135083 AGATGCTTCGTACTTCCGGTG 60.135 52.381 0.00 0.00 0.00 4.94
244 245 0.892755 ATGCTTCGTACTTCCGGTGA 59.107 50.000 0.00 0.00 0.00 4.02
245 246 0.675083 TGCTTCGTACTTCCGGTGAA 59.325 50.000 0.00 0.00 0.00 3.18
246 247 1.274167 TGCTTCGTACTTCCGGTGAAT 59.726 47.619 0.00 0.00 0.00 2.57
247 248 2.289195 TGCTTCGTACTTCCGGTGAATT 60.289 45.455 0.00 0.00 0.00 2.17
248 249 2.740447 GCTTCGTACTTCCGGTGAATTT 59.260 45.455 0.00 0.00 0.00 1.82
249 250 3.187842 GCTTCGTACTTCCGGTGAATTTT 59.812 43.478 0.00 0.00 0.00 1.82
250 251 4.389687 GCTTCGTACTTCCGGTGAATTTTA 59.610 41.667 0.00 0.00 0.00 1.52
251 252 5.064325 GCTTCGTACTTCCGGTGAATTTTAT 59.936 40.000 0.00 0.00 0.00 1.40
252 253 6.256321 GCTTCGTACTTCCGGTGAATTTTATA 59.744 38.462 0.00 0.00 0.00 0.98
253 254 7.201548 GCTTCGTACTTCCGGTGAATTTTATAA 60.202 37.037 0.00 0.00 0.00 0.98
254 255 8.721019 TTCGTACTTCCGGTGAATTTTATAAT 57.279 30.769 0.00 0.00 0.00 1.28
255 256 9.814899 TTCGTACTTCCGGTGAATTTTATAATA 57.185 29.630 0.00 0.00 0.00 0.98
256 257 9.467258 TCGTACTTCCGGTGAATTTTATAATAG 57.533 33.333 0.00 0.00 0.00 1.73
257 258 9.467258 CGTACTTCCGGTGAATTTTATAATAGA 57.533 33.333 0.00 0.00 0.00 1.98
326 327 9.071276 AGCAAAGATCTTTTTCTCTGAAATGTA 57.929 29.630 18.16 0.00 0.00 2.29
367 377 7.573968 AGAGATAACACCTATCCAAAAATGC 57.426 36.000 0.00 0.00 37.70 3.56
369 379 7.067494 AGAGATAACACCTATCCAAAAATGCAC 59.933 37.037 0.00 0.00 37.70 4.57
411 428 3.473625 ACCTACAACAACAGCAACCTAC 58.526 45.455 0.00 0.00 0.00 3.18
412 429 2.812011 CCTACAACAACAGCAACCTACC 59.188 50.000 0.00 0.00 0.00 3.18
436 453 4.903054 ACATGCACAATCAAGAGAAGAGA 58.097 39.130 0.00 0.00 0.00 3.10
437 454 5.311265 ACATGCACAATCAAGAGAAGAGAA 58.689 37.500 0.00 0.00 0.00 2.87
438 455 5.411977 ACATGCACAATCAAGAGAAGAGAAG 59.588 40.000 0.00 0.00 0.00 2.85
439 456 5.219343 TGCACAATCAAGAGAAGAGAAGA 57.781 39.130 0.00 0.00 0.00 2.87
440 457 5.236282 TGCACAATCAAGAGAAGAGAAGAG 58.764 41.667 0.00 0.00 0.00 2.85
524 545 8.056400 GGATCATAGATAGATAGGTGTAGGTGT 58.944 40.741 0.00 0.00 0.00 4.16
527 548 8.047911 TCATAGATAGATAGGTGTAGGTGTAGC 58.952 40.741 0.00 0.00 0.00 3.58
528 549 6.457159 AGATAGATAGGTGTAGGTGTAGCT 57.543 41.667 0.00 0.00 0.00 3.32
529 550 6.242396 AGATAGATAGGTGTAGGTGTAGCTG 58.758 44.000 0.00 0.00 0.00 4.24
530 551 3.567397 AGATAGGTGTAGGTGTAGCTGG 58.433 50.000 0.00 0.00 0.00 4.85
531 552 1.481871 TAGGTGTAGGTGTAGCTGGC 58.518 55.000 0.00 0.00 0.00 4.85
532 553 0.252284 AGGTGTAGGTGTAGCTGGCT 60.252 55.000 0.00 0.00 0.00 4.75
546 574 1.380246 TGGCTGGCCCATGATTGAC 60.380 57.895 9.28 0.00 39.18 3.18
569 602 2.019984 CAGCTACCAAAAGATGAGGCC 58.980 52.381 0.00 0.00 34.81 5.19
626 722 1.067364 CACACCACACCACACGTAGTA 59.933 52.381 0.00 0.00 41.61 1.82
636 732 2.223595 CCACACGTAGTAGATGCAGAGG 60.224 54.545 0.00 0.00 41.61 3.69
637 733 1.405821 ACACGTAGTAGATGCAGAGGC 59.594 52.381 0.00 0.00 41.61 4.70
789 899 0.909623 TGAAACGATTCTCCCTCCCC 59.090 55.000 6.98 0.00 36.48 4.81
790 900 1.205055 GAAACGATTCTCCCTCCCCT 58.795 55.000 0.00 0.00 32.57 4.79
793 903 1.839296 CGATTCTCCCTCCCCTCCC 60.839 68.421 0.00 0.00 0.00 4.30
806 916 2.736826 CCTCCCTCCCTCGCTTTCC 61.737 68.421 0.00 0.00 0.00 3.13
807 917 1.687493 CTCCCTCCCTCGCTTTCCT 60.687 63.158 0.00 0.00 0.00 3.36
820 930 3.056465 TCGCTTTCCTCCTCTTCTTTCTC 60.056 47.826 0.00 0.00 0.00 2.87
831 964 2.158900 TCTTCTTTCTCGCATCATCCCC 60.159 50.000 0.00 0.00 0.00 4.81
850 983 3.020237 GCCCACCCGTCTTCTCCTC 62.020 68.421 0.00 0.00 0.00 3.71
880 1019 1.871080 CTATAAAGCCCGCCTGACAG 58.129 55.000 0.00 0.00 0.00 3.51
881 1020 0.179056 TATAAAGCCCGCCTGACAGC 60.179 55.000 0.00 0.00 0.00 4.40
882 1021 2.893682 ATAAAGCCCGCCTGACAGCC 62.894 60.000 0.00 0.00 0.00 4.85
886 1025 4.020617 CCCGCCTGACAGCCTGAA 62.021 66.667 0.00 0.00 0.00 3.02
887 1026 2.032528 CCGCCTGACAGCCTGAAA 59.967 61.111 0.00 0.00 0.00 2.69
897 1036 1.073199 AGCCTGAAACCGACCCAAG 59.927 57.895 0.00 0.00 0.00 3.61
900 1039 0.323629 CCTGAAACCGACCCAAGCTA 59.676 55.000 0.00 0.00 0.00 3.32
906 1045 4.077184 CGACCCAAGCTACCCGCA 62.077 66.667 0.00 0.00 42.61 5.69
988 1127 4.866224 TGGTGTGCGTGGTGGTGG 62.866 66.667 0.00 0.00 0.00 4.61
1335 1474 3.056328 GCCTTCTCCAACGTGGCC 61.056 66.667 0.00 0.00 37.47 5.36
1389 1528 1.080434 GTCCGAGTCGCTGAAGCTT 60.080 57.895 7.12 0.00 39.32 3.74
1390 1529 1.080501 TCCGAGTCGCTGAAGCTTG 60.081 57.895 2.10 0.00 39.32 4.01
1498 1637 3.722813 CCCACGCCCACCACCATA 61.723 66.667 0.00 0.00 0.00 2.74
1499 1638 2.124736 CCACGCCCACCACCATAG 60.125 66.667 0.00 0.00 0.00 2.23
1500 1639 2.824041 CACGCCCACCACCATAGC 60.824 66.667 0.00 0.00 0.00 2.97
1614 1765 4.332637 GGCAACTGCGTGTGCCTG 62.333 66.667 15.10 0.00 43.26 4.85
1868 2038 9.210329 CAAATGAATTGTCTGAAATGAATCCAA 57.790 29.630 0.00 0.00 34.16 3.53
1874 2055 9.781633 AATTGTCTGAAATGAATCCAAATGAAA 57.218 25.926 0.00 0.00 0.00 2.69
1876 2057 9.781633 TTGTCTGAAATGAATCCAAATGAAATT 57.218 25.926 0.00 0.00 38.98 1.82
1877 2058 9.426837 TGTCTGAAATGAATCCAAATGAAATTC 57.573 29.630 0.00 0.00 33.67 2.17
1878 2059 8.589629 GTCTGAAATGAATCCAAATGAAATTCG 58.410 33.333 0.00 0.00 33.67 3.34
2076 2257 0.537188 ACCTCACCATTCCACTAGCG 59.463 55.000 0.00 0.00 0.00 4.26
2078 2259 0.108186 CTCACCATTCCACTAGCGCA 60.108 55.000 11.47 0.00 0.00 6.09
2104 2288 7.984050 ACATAGTACATCCAGATTCAGAGTTTG 59.016 37.037 0.00 0.00 0.00 2.93
2105 2289 5.738909 AGTACATCCAGATTCAGAGTTTGG 58.261 41.667 0.00 0.00 0.00 3.28
2111 2299 3.077359 CAGATTCAGAGTTTGGGACACC 58.923 50.000 0.00 0.00 39.29 4.16
2147 2335 1.946984 TCCTTACCGATGGTCCAACT 58.053 50.000 0.00 0.00 37.09 3.16
2148 2336 1.829222 TCCTTACCGATGGTCCAACTC 59.171 52.381 0.00 0.00 37.09 3.01
2177 2365 1.466856 CACTGTCCACCCATGATTGG 58.533 55.000 6.27 6.27 43.23 3.16
2198 2386 2.594962 CGACACGGCACCTGACAAC 61.595 63.158 0.00 0.00 0.00 3.32
2248 2436 0.696501 GGTGTTGGTGATAGGTGGGT 59.303 55.000 0.00 0.00 0.00 4.51
2304 2492 0.250901 TCCAGCAGCCTCCAAAAGTC 60.251 55.000 0.00 0.00 0.00 3.01
2331 2519 0.534877 ATGACACGGAGCAGCAACAA 60.535 50.000 0.00 0.00 0.00 2.83
2334 2522 1.029408 ACACGGAGCAGCAACAACAA 61.029 50.000 0.00 0.00 0.00 2.83
2338 2526 1.559831 GGAGCAGCAACAACAACAAC 58.440 50.000 0.00 0.00 0.00 3.32
2339 2527 1.135141 GGAGCAGCAACAACAACAACA 60.135 47.619 0.00 0.00 0.00 3.33
2346 2534 2.335752 CAACAACAACAACAGCAGCAA 58.664 42.857 0.00 0.00 0.00 3.91
2347 2535 1.994916 ACAACAACAACAGCAGCAAC 58.005 45.000 0.00 0.00 0.00 4.17
2348 2536 1.271934 ACAACAACAACAGCAGCAACA 59.728 42.857 0.00 0.00 0.00 3.33
2349 2537 1.655099 CAACAACAACAGCAGCAACAC 59.345 47.619 0.00 0.00 0.00 3.32
2355 2543 1.666209 AACAGCAGCAACACCACCAC 61.666 55.000 0.00 0.00 0.00 4.16
2358 2546 3.119193 CAGCAACACCACCACCAC 58.881 61.111 0.00 0.00 0.00 4.16
2399 2587 3.595819 GCAGATGCAACCCTGACC 58.404 61.111 15.48 0.00 41.59 4.02
2400 2588 2.048603 GCAGATGCAACCCTGACCC 61.049 63.158 15.48 0.00 41.59 4.46
2402 2590 0.679002 CAGATGCAACCCTGACCCTG 60.679 60.000 8.00 0.00 32.37 4.45
2404 2592 0.678048 GATGCAACCCTGACCCTGAC 60.678 60.000 0.00 0.00 0.00 3.51
2405 2593 1.136329 ATGCAACCCTGACCCTGACT 61.136 55.000 0.00 0.00 0.00 3.41
2406 2594 1.003233 GCAACCCTGACCCTGACTC 60.003 63.158 0.00 0.00 0.00 3.36
2419 2610 2.289945 CCCTGACTCAAGACTGGGAAAG 60.290 54.545 15.84 0.00 46.20 2.62
2429 2620 1.449246 CTGGGAAAGCAGAGGAGCG 60.449 63.158 0.00 0.00 40.15 5.03
2443 2634 1.895707 GAGCGCTCCATCCATTGGG 60.896 63.158 27.22 0.00 46.45 4.12
2461 2654 1.324383 GGTGGGTGGGTGTTAACAAG 58.676 55.000 10.51 0.00 0.00 3.16
2462 2655 1.410507 GGTGGGTGGGTGTTAACAAGT 60.411 52.381 10.51 0.00 0.00 3.16
2463 2656 1.679153 GTGGGTGGGTGTTAACAAGTG 59.321 52.381 10.51 0.00 0.00 3.16
2464 2657 0.671796 GGGTGGGTGTTAACAAGTGC 59.328 55.000 10.51 0.00 0.00 4.40
2465 2658 0.309612 GGTGGGTGTTAACAAGTGCG 59.690 55.000 10.51 0.00 0.00 5.34
2491 2684 4.466828 CAGCAAATAAGTTCTCCAACACG 58.533 43.478 0.00 0.00 34.60 4.49
2526 2719 5.756195 TTGTTTCCATGTTCTTGTGAGAG 57.244 39.130 0.00 0.00 32.44 3.20
2527 2720 4.780815 TGTTTCCATGTTCTTGTGAGAGT 58.219 39.130 0.00 0.00 32.44 3.24
2529 2722 3.407424 TCCATGTTCTTGTGAGAGTGG 57.593 47.619 0.00 0.00 34.59 4.00
2530 2723 2.038952 TCCATGTTCTTGTGAGAGTGGG 59.961 50.000 0.00 0.00 34.31 4.61
2531 2724 2.038952 CCATGTTCTTGTGAGAGTGGGA 59.961 50.000 0.00 0.00 31.99 4.37
2532 2725 2.910688 TGTTCTTGTGAGAGTGGGAC 57.089 50.000 0.00 0.00 32.44 4.46
2588 2782 2.352034 CTCAGTCATGTCATGAAGCTGC 59.648 50.000 20.85 9.45 41.69 5.25
2603 2797 1.137872 AGCTGCTTAGGTTCTGATCCG 59.862 52.381 0.00 0.00 0.00 4.18
2656 2850 8.807948 AAGATTCTAAACCAAAGCTAATAGCA 57.192 30.769 15.28 0.00 45.56 3.49
2663 2857 5.567138 ACCAAAGCTAATAGCAACATCAC 57.433 39.130 15.28 0.00 45.56 3.06
2667 2861 6.253746 CAAAGCTAATAGCAACATCACAGAC 58.746 40.000 15.28 0.00 45.56 3.51
2669 2863 4.872691 AGCTAATAGCAACATCACAGACAC 59.127 41.667 15.28 0.00 45.56 3.67
2683 2877 9.058174 ACATCACAGACACTATGTATACTAGAC 57.942 37.037 4.17 0.00 30.99 2.59
2690 2884 3.677121 ACTATGTATACTAGACGTCGCCG 59.323 47.826 10.46 5.10 40.83 6.46
2706 2907 0.111310 GCCGCGTTTTGCATGTTTTC 60.111 50.000 4.92 0.00 46.97 2.29
2833 3037 4.986054 TGGTAAACTTTTAGCAGAGGGA 57.014 40.909 9.08 0.00 43.69 4.20
2880 3085 7.598869 GGGAGTTGAAATAAACCAAGATGAAAC 59.401 37.037 0.00 0.00 0.00 2.78
2892 3097 7.031226 ACCAAGATGAAACATATCGGAAATG 57.969 36.000 0.00 0.00 0.00 2.32
2945 3150 5.205565 CGTACATCAATCTTCTTCGATCGA 58.794 41.667 15.15 15.15 0.00 3.59
2949 3154 2.852413 TCAATCTTCTTCGATCGAACGC 59.148 45.455 25.96 0.00 0.00 4.84
3047 3263 4.381411 ACTTCTTCAGTTGCTTCCTGTAC 58.619 43.478 0.00 0.00 27.32 2.90
3067 3283 4.726035 ACTCTATCCAGTCGATCCCTAA 57.274 45.455 0.00 0.00 31.92 2.69
3071 3287 5.394738 TCTATCCAGTCGATCCCTAACATT 58.605 41.667 0.00 0.00 31.92 2.71
3072 3288 4.608948 ATCCAGTCGATCCCTAACATTC 57.391 45.455 0.00 0.00 0.00 2.67
3077 3296 4.935205 CAGTCGATCCCTAACATTCAAACA 59.065 41.667 0.00 0.00 0.00 2.83
3080 3299 4.698304 TCGATCCCTAACATTCAAACAACC 59.302 41.667 0.00 0.00 0.00 3.77
3090 3309 7.693969 AACATTCAAACAACCCAAAATTCAA 57.306 28.000 0.00 0.00 0.00 2.69
3092 3311 6.094742 ACATTCAAACAACCCAAAATTCAACC 59.905 34.615 0.00 0.00 0.00 3.77
3094 3313 4.019321 TCAAACAACCCAAAATTCAACCCA 60.019 37.500 0.00 0.00 0.00 4.51
3096 3315 4.576330 ACAACCCAAAATTCAACCCAAA 57.424 36.364 0.00 0.00 0.00 3.28
3097 3316 4.923415 ACAACCCAAAATTCAACCCAAAA 58.077 34.783 0.00 0.00 0.00 2.44
3099 3318 5.954752 ACAACCCAAAATTCAACCCAAAATT 59.045 32.000 0.00 0.00 0.00 1.82
3102 3321 6.190587 ACCCAAAATTCAACCCAAAATTCAA 58.809 32.000 0.00 0.00 0.00 2.69
3103 3322 6.096141 ACCCAAAATTCAACCCAAAATTCAAC 59.904 34.615 0.00 0.00 0.00 3.18
3104 3323 6.460814 CCCAAAATTCAACCCAAAATTCAACC 60.461 38.462 0.00 0.00 0.00 3.77
3105 3324 6.460814 CCAAAATTCAACCCAAAATTCAACCC 60.461 38.462 0.00 0.00 0.00 4.11
3107 3326 4.844349 TTCAACCCAAAATTCAACCCAA 57.156 36.364 0.00 0.00 0.00 4.12
3108 3327 4.844349 TCAACCCAAAATTCAACCCAAA 57.156 36.364 0.00 0.00 0.00 3.28
3109 3328 5.179452 TCAACCCAAAATTCAACCCAAAA 57.821 34.783 0.00 0.00 0.00 2.44
3110 3329 5.760131 TCAACCCAAAATTCAACCCAAAAT 58.240 33.333 0.00 0.00 0.00 1.82
3116 3335 6.545298 CCCAAAATTCAACCCAAAATTCAAGA 59.455 34.615 0.00 0.00 0.00 3.02
3117 3336 7.067981 CCCAAAATTCAACCCAAAATTCAAGAA 59.932 33.333 0.00 0.00 0.00 2.52
3118 3337 8.631797 CCAAAATTCAACCCAAAATTCAAGAAT 58.368 29.630 0.00 0.00 0.00 2.40
3126 3345 8.764287 CAACCCAAAATTCAAGAATAGTTGAAC 58.236 33.333 15.37 0.00 46.53 3.18
3165 3409 6.908870 AAACAAGCCAAAATTCAGAAGAAC 57.091 33.333 0.00 0.00 36.39 3.01
3173 3417 5.107760 CCAAAATTCAGAAGAACGCATTGTG 60.108 40.000 0.00 0.00 36.39 3.33
3187 3431 3.317150 GCATTGTGGTACCTTCTTTTGC 58.683 45.455 14.36 10.81 0.00 3.68
3193 3437 1.541588 GGTACCTTCTTTTGCAGCCAG 59.458 52.381 4.06 0.00 0.00 4.85
3236 3480 0.750911 CCTTCTCCATGCCCTTCAGC 60.751 60.000 0.00 0.00 0.00 4.26
3251 3495 0.320334 TCAGCCCACACATGTACACG 60.320 55.000 0.00 0.00 0.00 4.49
3272 3516 2.262423 AGGTGTTGTCCTTCTTCAGC 57.738 50.000 0.00 0.00 33.52 4.26
3329 3573 3.706594 TGGTCTGGATGTACATCTTCTCC 59.293 47.826 29.87 25.03 37.92 3.71
3359 3603 0.689080 TGGTCTCCTCCCTGCTGATC 60.689 60.000 0.00 0.00 0.00 2.92
3368 3612 1.299468 CCTGCTGATCGCGTAGTCC 60.299 63.158 5.77 0.00 43.27 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.223876 ACCATGTTCAGTGCTGCAAAAG 60.224 45.455 2.77 0.00 0.00 2.27
12 13 1.755959 ACCATGTTCAGTGCTGCAAAA 59.244 42.857 2.77 0.00 0.00 2.44
13 14 1.401761 ACCATGTTCAGTGCTGCAAA 58.598 45.000 2.77 0.00 0.00 3.68
14 15 1.337703 GAACCATGTTCAGTGCTGCAA 59.662 47.619 2.77 0.00 0.00 4.08
15 16 0.953727 GAACCATGTTCAGTGCTGCA 59.046 50.000 0.00 0.00 0.00 4.41
16 17 0.242017 GGAACCATGTTCAGTGCTGC 59.758 55.000 9.01 0.00 0.00 5.25
17 18 0.518636 CGGAACCATGTTCAGTGCTG 59.481 55.000 9.01 0.00 0.00 4.41
18 19 0.606401 CCGGAACCATGTTCAGTGCT 60.606 55.000 0.00 0.00 0.00 4.40
19 20 1.586154 CCCGGAACCATGTTCAGTGC 61.586 60.000 0.73 0.00 0.00 4.40
20 21 1.586154 GCCCGGAACCATGTTCAGTG 61.586 60.000 0.73 0.00 0.00 3.66
21 22 1.303317 GCCCGGAACCATGTTCAGT 60.303 57.895 0.73 0.00 0.00 3.41
22 23 1.303236 TGCCCGGAACCATGTTCAG 60.303 57.895 0.73 4.93 0.00 3.02
23 24 1.602323 GTGCCCGGAACCATGTTCA 60.602 57.895 0.73 0.00 0.00 3.18
24 25 1.303317 AGTGCCCGGAACCATGTTC 60.303 57.895 0.73 0.00 0.00 3.18
25 26 1.303317 GAGTGCCCGGAACCATGTT 60.303 57.895 0.73 0.00 0.00 2.71
26 27 2.063015 TTGAGTGCCCGGAACCATGT 62.063 55.000 0.73 0.00 0.00 3.21
27 28 1.303236 TTGAGTGCCCGGAACCATG 60.303 57.895 0.73 0.00 0.00 3.66
28 29 1.002134 CTTGAGTGCCCGGAACCAT 60.002 57.895 0.73 0.00 0.00 3.55
29 30 1.488705 ATCTTGAGTGCCCGGAACCA 61.489 55.000 0.73 0.00 0.00 3.67
30 31 0.539986 TATCTTGAGTGCCCGGAACC 59.460 55.000 0.73 0.00 0.00 3.62
31 32 2.484889 GATATCTTGAGTGCCCGGAAC 58.515 52.381 0.73 0.00 0.00 3.62
32 33 1.068588 CGATATCTTGAGTGCCCGGAA 59.931 52.381 0.73 0.00 0.00 4.30
33 34 0.673985 CGATATCTTGAGTGCCCGGA 59.326 55.000 0.73 0.00 0.00 5.14
34 35 0.946221 GCGATATCTTGAGTGCCCGG 60.946 60.000 0.00 0.00 0.00 5.73
35 36 1.278172 CGCGATATCTTGAGTGCCCG 61.278 60.000 0.00 0.00 0.00 6.13
36 37 0.249489 ACGCGATATCTTGAGTGCCC 60.249 55.000 15.93 0.00 0.00 5.36
37 38 1.571919 AACGCGATATCTTGAGTGCC 58.428 50.000 15.93 0.00 0.00 5.01
38 39 2.348666 ACAAACGCGATATCTTGAGTGC 59.651 45.455 15.93 0.00 0.00 4.40
39 40 3.367932 ACACAAACGCGATATCTTGAGTG 59.632 43.478 15.93 11.36 0.00 3.51
40 41 3.585862 ACACAAACGCGATATCTTGAGT 58.414 40.909 15.93 9.62 0.00 3.41
41 42 4.584029 AACACAAACGCGATATCTTGAG 57.416 40.909 15.93 9.01 0.00 3.02
42 43 4.377943 CCAAACACAAACGCGATATCTTGA 60.378 41.667 15.93 0.00 0.00 3.02
43 44 3.845775 CCAAACACAAACGCGATATCTTG 59.154 43.478 15.93 10.35 0.00 3.02
44 45 3.749088 TCCAAACACAAACGCGATATCTT 59.251 39.130 15.93 0.00 0.00 2.40
45 46 3.331150 TCCAAACACAAACGCGATATCT 58.669 40.909 15.93 0.00 0.00 1.98
46 47 3.369756 TCTCCAAACACAAACGCGATATC 59.630 43.478 15.93 0.00 0.00 1.63
47 48 3.331150 TCTCCAAACACAAACGCGATAT 58.669 40.909 15.93 0.00 0.00 1.63
48 49 2.734606 CTCTCCAAACACAAACGCGATA 59.265 45.455 15.93 0.00 0.00 2.92
49 50 1.531149 CTCTCCAAACACAAACGCGAT 59.469 47.619 15.93 0.00 0.00 4.58
50 51 0.934496 CTCTCCAAACACAAACGCGA 59.066 50.000 15.93 0.00 0.00 5.87
51 52 0.041312 CCTCTCCAAACACAAACGCG 60.041 55.000 3.53 3.53 0.00 6.01
52 53 0.317854 GCCTCTCCAAACACAAACGC 60.318 55.000 0.00 0.00 0.00 4.84
53 54 0.041312 CGCCTCTCCAAACACAAACG 60.041 55.000 0.00 0.00 0.00 3.60
54 55 1.021968 ACGCCTCTCCAAACACAAAC 58.978 50.000 0.00 0.00 0.00 2.93
55 56 2.103432 TCTACGCCTCTCCAAACACAAA 59.897 45.455 0.00 0.00 0.00 2.83
56 57 1.689813 TCTACGCCTCTCCAAACACAA 59.310 47.619 0.00 0.00 0.00 3.33
57 58 1.334160 TCTACGCCTCTCCAAACACA 58.666 50.000 0.00 0.00 0.00 3.72
58 59 2.673368 CAATCTACGCCTCTCCAAACAC 59.327 50.000 0.00 0.00 0.00 3.32
59 60 2.301870 ACAATCTACGCCTCTCCAAACA 59.698 45.455 0.00 0.00 0.00 2.83
60 61 2.973945 ACAATCTACGCCTCTCCAAAC 58.026 47.619 0.00 0.00 0.00 2.93
61 62 4.021229 TCTACAATCTACGCCTCTCCAAA 58.979 43.478 0.00 0.00 0.00 3.28
62 63 3.628008 TCTACAATCTACGCCTCTCCAA 58.372 45.455 0.00 0.00 0.00 3.53
63 64 3.292492 TCTACAATCTACGCCTCTCCA 57.708 47.619 0.00 0.00 0.00 3.86
64 65 4.321378 GGAATCTACAATCTACGCCTCTCC 60.321 50.000 0.00 0.00 0.00 3.71
65 66 4.278669 TGGAATCTACAATCTACGCCTCTC 59.721 45.833 0.00 0.00 0.00 3.20
66 67 4.215908 TGGAATCTACAATCTACGCCTCT 58.784 43.478 0.00 0.00 0.00 3.69
67 68 4.551388 CTGGAATCTACAATCTACGCCTC 58.449 47.826 0.00 0.00 0.00 4.70
68 69 3.243907 GCTGGAATCTACAATCTACGCCT 60.244 47.826 0.00 0.00 0.00 5.52
69 70 3.060602 GCTGGAATCTACAATCTACGCC 58.939 50.000 0.00 0.00 0.00 5.68
70 71 3.060602 GGCTGGAATCTACAATCTACGC 58.939 50.000 0.00 0.00 0.00 4.42
71 72 3.004419 TCGGCTGGAATCTACAATCTACG 59.996 47.826 0.00 0.00 0.00 3.51
72 73 4.278669 TCTCGGCTGGAATCTACAATCTAC 59.721 45.833 0.00 0.00 0.00 2.59
73 74 4.470602 TCTCGGCTGGAATCTACAATCTA 58.529 43.478 0.00 0.00 0.00 1.98
74 75 3.300388 TCTCGGCTGGAATCTACAATCT 58.700 45.455 0.00 0.00 0.00 2.40
75 76 3.735237 TCTCGGCTGGAATCTACAATC 57.265 47.619 0.00 0.00 0.00 2.67
76 77 3.706594 TCTTCTCGGCTGGAATCTACAAT 59.293 43.478 0.00 0.00 0.00 2.71
77 78 3.096852 TCTTCTCGGCTGGAATCTACAA 58.903 45.455 0.00 0.00 0.00 2.41
78 79 2.427453 GTCTTCTCGGCTGGAATCTACA 59.573 50.000 0.00 0.00 0.00 2.74
79 80 2.691011 AGTCTTCTCGGCTGGAATCTAC 59.309 50.000 0.00 0.00 0.00 2.59
80 81 3.019799 AGTCTTCTCGGCTGGAATCTA 57.980 47.619 0.00 0.00 0.00 1.98
81 82 1.859302 AGTCTTCTCGGCTGGAATCT 58.141 50.000 0.00 0.00 0.00 2.40
82 83 2.035321 CCTAGTCTTCTCGGCTGGAATC 59.965 54.545 0.00 0.00 0.00 2.52
83 84 2.035632 CCTAGTCTTCTCGGCTGGAAT 58.964 52.381 0.00 0.00 0.00 3.01
84 85 1.005569 TCCTAGTCTTCTCGGCTGGAA 59.994 52.381 0.00 0.00 0.00 3.53
85 86 0.624254 TCCTAGTCTTCTCGGCTGGA 59.376 55.000 0.00 0.00 0.00 3.86
86 87 1.475403 TTCCTAGTCTTCTCGGCTGG 58.525 55.000 0.00 0.00 0.00 4.85
87 88 3.516615 CTTTTCCTAGTCTTCTCGGCTG 58.483 50.000 0.00 0.00 0.00 4.85
88 89 2.498078 CCTTTTCCTAGTCTTCTCGGCT 59.502 50.000 0.00 0.00 0.00 5.52
89 90 2.234168 ACCTTTTCCTAGTCTTCTCGGC 59.766 50.000 0.00 0.00 0.00 5.54
90 91 3.510360 TGACCTTTTCCTAGTCTTCTCGG 59.490 47.826 0.00 0.00 0.00 4.63
91 92 4.381079 CCTGACCTTTTCCTAGTCTTCTCG 60.381 50.000 0.00 0.00 0.00 4.04
92 93 4.621983 GCCTGACCTTTTCCTAGTCTTCTC 60.622 50.000 0.00 0.00 0.00 2.87
93 94 3.262151 GCCTGACCTTTTCCTAGTCTTCT 59.738 47.826 0.00 0.00 0.00 2.85
94 95 3.601435 GCCTGACCTTTTCCTAGTCTTC 58.399 50.000 0.00 0.00 0.00 2.87
95 96 2.306219 GGCCTGACCTTTTCCTAGTCTT 59.694 50.000 0.00 0.00 34.51 3.01
96 97 1.909986 GGCCTGACCTTTTCCTAGTCT 59.090 52.381 0.00 0.00 34.51 3.24
97 98 1.405661 CGGCCTGACCTTTTCCTAGTC 60.406 57.143 0.00 0.00 35.61 2.59
98 99 0.613777 CGGCCTGACCTTTTCCTAGT 59.386 55.000 0.00 0.00 35.61 2.57
99 100 0.107654 CCGGCCTGACCTTTTCCTAG 60.108 60.000 0.00 0.00 35.61 3.02
100 101 1.988015 CCGGCCTGACCTTTTCCTA 59.012 57.895 0.00 0.00 35.61 2.94
101 102 2.757077 CCGGCCTGACCTTTTCCT 59.243 61.111 0.00 0.00 35.61 3.36
102 103 3.062466 GCCGGCCTGACCTTTTCC 61.062 66.667 18.11 0.00 35.61 3.13
103 104 2.034221 AGCCGGCCTGACCTTTTC 59.966 61.111 26.15 0.00 35.61 2.29
104 105 2.034221 GAGCCGGCCTGACCTTTT 59.966 61.111 26.15 0.00 35.61 2.27
105 106 4.035102 GGAGCCGGCCTGACCTTT 62.035 66.667 26.15 0.00 35.61 3.11
122 123 4.944372 GTCGCCGCTCCCATACCG 62.944 72.222 0.00 0.00 0.00 4.02
123 124 3.792053 CTGTCGCCGCTCCCATACC 62.792 68.421 0.00 0.00 0.00 2.73
124 125 2.279517 CTGTCGCCGCTCCCATAC 60.280 66.667 0.00 0.00 0.00 2.39
125 126 4.221422 GCTGTCGCCGCTCCCATA 62.221 66.667 0.00 0.00 0.00 2.74
154 155 4.803426 CTGCCGCCAGGACGAGAC 62.803 72.222 4.99 0.00 41.02 3.36
159 160 3.818787 CATTGCTGCCGCCAGGAC 61.819 66.667 0.00 0.00 39.28 3.85
162 163 3.818787 GACCATTGCTGCCGCCAG 61.819 66.667 0.00 0.00 42.13 4.85
165 166 3.667429 GAACGACCATTGCTGCCGC 62.667 63.158 0.00 0.00 0.00 6.53
166 167 2.480555 GAACGACCATTGCTGCCG 59.519 61.111 0.00 0.00 0.00 5.69
167 168 2.480555 CGAACGACCATTGCTGCC 59.519 61.111 0.00 0.00 0.00 4.85
168 169 2.325082 ACCGAACGACCATTGCTGC 61.325 57.895 0.00 0.00 0.00 5.25
169 170 1.497278 CACCGAACGACCATTGCTG 59.503 57.895 0.00 0.00 0.00 4.41
170 171 1.671054 CCACCGAACGACCATTGCT 60.671 57.895 0.00 0.00 0.00 3.91
171 172 1.512156 AACCACCGAACGACCATTGC 61.512 55.000 0.00 0.00 0.00 3.56
172 173 0.515564 GAACCACCGAACGACCATTG 59.484 55.000 0.00 0.00 0.00 2.82
173 174 0.107081 TGAACCACCGAACGACCATT 59.893 50.000 0.00 0.00 0.00 3.16
174 175 0.323629 ATGAACCACCGAACGACCAT 59.676 50.000 0.00 0.00 0.00 3.55
175 176 0.601576 CATGAACCACCGAACGACCA 60.602 55.000 0.00 0.00 0.00 4.02
176 177 1.296056 CCATGAACCACCGAACGACC 61.296 60.000 0.00 0.00 0.00 4.79
177 178 0.320073 TCCATGAACCACCGAACGAC 60.320 55.000 0.00 0.00 0.00 4.34
178 179 0.320073 GTCCATGAACCACCGAACGA 60.320 55.000 0.00 0.00 0.00 3.85
179 180 1.296056 GGTCCATGAACCACCGAACG 61.296 60.000 0.00 0.00 39.27 3.95
180 181 0.036306 AGGTCCATGAACCACCGAAC 59.964 55.000 3.09 0.00 42.12 3.95
181 182 0.323629 GAGGTCCATGAACCACCGAA 59.676 55.000 3.09 0.00 42.12 4.30
182 183 1.884075 CGAGGTCCATGAACCACCGA 61.884 60.000 3.09 0.00 42.12 4.69
183 184 1.447838 CGAGGTCCATGAACCACCG 60.448 63.158 3.09 2.43 42.12 4.94
184 185 0.541863 ATCGAGGTCCATGAACCACC 59.458 55.000 3.09 0.00 42.12 4.61
185 186 1.066143 ACATCGAGGTCCATGAACCAC 60.066 52.381 3.09 0.00 42.12 4.16
186 187 1.275666 ACATCGAGGTCCATGAACCA 58.724 50.000 3.09 0.00 42.12 3.67
187 188 3.536956 TTACATCGAGGTCCATGAACC 57.463 47.619 5.75 0.00 39.80 3.62
188 189 7.730364 ATAAATTACATCGAGGTCCATGAAC 57.270 36.000 5.75 0.00 0.00 3.18
211 212 9.547753 AAGTACGAAGCATCTCAAACATAATAT 57.452 29.630 0.00 0.00 0.00 1.28
212 213 8.942338 AAGTACGAAGCATCTCAAACATAATA 57.058 30.769 0.00 0.00 0.00 0.98
213 214 7.011482 GGAAGTACGAAGCATCTCAAACATAAT 59.989 37.037 0.00 0.00 0.00 1.28
214 215 6.312918 GGAAGTACGAAGCATCTCAAACATAA 59.687 38.462 0.00 0.00 0.00 1.90
215 216 5.810587 GGAAGTACGAAGCATCTCAAACATA 59.189 40.000 0.00 0.00 0.00 2.29
216 217 4.631813 GGAAGTACGAAGCATCTCAAACAT 59.368 41.667 0.00 0.00 0.00 2.71
217 218 3.994392 GGAAGTACGAAGCATCTCAAACA 59.006 43.478 0.00 0.00 0.00 2.83
218 219 3.060895 CGGAAGTACGAAGCATCTCAAAC 59.939 47.826 0.00 0.00 35.47 2.93
219 220 3.250744 CGGAAGTACGAAGCATCTCAAA 58.749 45.455 0.00 0.00 35.47 2.69
220 221 2.416836 CCGGAAGTACGAAGCATCTCAA 60.417 50.000 0.00 0.00 35.47 3.02
221 222 1.134367 CCGGAAGTACGAAGCATCTCA 59.866 52.381 0.00 0.00 35.47 3.27
222 223 1.134560 ACCGGAAGTACGAAGCATCTC 59.865 52.381 9.46 0.00 35.47 2.75
223 224 1.135083 CACCGGAAGTACGAAGCATCT 60.135 52.381 9.46 0.00 35.47 2.90
224 225 1.135199 TCACCGGAAGTACGAAGCATC 60.135 52.381 9.46 0.00 35.47 3.91
225 226 0.892755 TCACCGGAAGTACGAAGCAT 59.107 50.000 9.46 0.00 35.47 3.79
226 227 0.675083 TTCACCGGAAGTACGAAGCA 59.325 50.000 9.46 0.00 35.47 3.91
227 228 2.005971 ATTCACCGGAAGTACGAAGC 57.994 50.000 9.46 0.00 36.25 3.86
228 229 6.657836 ATAAAATTCACCGGAAGTACGAAG 57.342 37.500 9.46 0.00 36.25 3.79
229 230 8.721019 ATTATAAAATTCACCGGAAGTACGAA 57.279 30.769 9.46 0.83 36.25 3.85
230 231 9.467258 CTATTATAAAATTCACCGGAAGTACGA 57.533 33.333 9.46 0.00 36.25 3.43
231 232 9.467258 TCTATTATAAAATTCACCGGAAGTACG 57.533 33.333 9.46 0.00 36.25 3.67
285 286 7.960262 AGATCTTTGCTTTCTTGATCCTTTTT 58.040 30.769 0.00 0.00 35.46 1.94
286 287 7.536159 AGATCTTTGCTTTCTTGATCCTTTT 57.464 32.000 0.00 0.00 35.46 2.27
287 288 7.536159 AAGATCTTTGCTTTCTTGATCCTTT 57.464 32.000 0.88 0.00 35.46 3.11
288 289 7.536159 AAAGATCTTTGCTTTCTTGATCCTT 57.464 32.000 19.86 0.00 35.46 3.36
354 364 7.282675 AGAGAGATTCTGTGCATTTTTGGATAG 59.717 37.037 0.00 0.00 33.93 2.08
367 377 6.072783 GGTTTGGAAAGAAGAGAGATTCTGTG 60.073 42.308 0.00 0.00 39.47 3.66
369 379 6.237154 AGGTTTGGAAAGAAGAGAGATTCTG 58.763 40.000 0.00 0.00 39.47 3.02
411 428 5.181009 TCTTCTCTTGATTGTGCATGTAGG 58.819 41.667 0.00 0.00 0.00 3.18
412 429 6.104665 TCTCTTCTCTTGATTGTGCATGTAG 58.895 40.000 0.00 0.00 0.00 2.74
436 453 4.484270 TCCTTTATCCTCTCCTCTCCTCTT 59.516 45.833 0.00 0.00 0.00 2.85
437 454 4.058731 TCCTTTATCCTCTCCTCTCCTCT 58.941 47.826 0.00 0.00 0.00 3.69
438 455 4.407365 CTCCTTTATCCTCTCCTCTCCTC 58.593 52.174 0.00 0.00 0.00 3.71
439 456 3.142028 CCTCCTTTATCCTCTCCTCTCCT 59.858 52.174 0.00 0.00 0.00 3.69
440 457 3.141272 TCCTCCTTTATCCTCTCCTCTCC 59.859 52.174 0.00 0.00 0.00 3.71
524 545 1.648302 AATCATGGGCCAGCCAGCTA 61.648 55.000 13.78 0.00 37.98 3.32
525 546 3.005148 AATCATGGGCCAGCCAGCT 62.005 57.895 13.78 0.00 37.98 4.24
526 547 2.443390 AATCATGGGCCAGCCAGC 60.443 61.111 13.78 0.00 37.98 4.85
527 548 1.076559 TCAATCATGGGCCAGCCAG 60.077 57.895 13.78 1.71 37.98 4.85
528 549 1.380246 GTCAATCATGGGCCAGCCA 60.380 57.895 13.78 0.00 37.98 4.75
529 550 1.380246 TGTCAATCATGGGCCAGCC 60.380 57.895 13.78 0.00 0.00 4.85
530 551 2.012902 GCTGTCAATCATGGGCCAGC 62.013 60.000 13.78 2.07 36.64 4.85
531 552 0.681887 TGCTGTCAATCATGGGCCAG 60.682 55.000 13.78 4.37 0.00 4.85
532 553 0.681887 CTGCTGTCAATCATGGGCCA 60.682 55.000 9.61 9.61 0.00 5.36
546 574 2.681848 CCTCATCTTTTGGTAGCTGCTG 59.318 50.000 13.43 0.00 0.00 4.41
636 732 1.443872 GCATGCAAGTGTCTGCTGC 60.444 57.895 14.21 0.00 43.07 5.25
637 733 1.129998 GTAGCATGCAAGTGTCTGCTG 59.870 52.381 21.98 0.00 44.27 4.41
638 734 1.446907 GTAGCATGCAAGTGTCTGCT 58.553 50.000 21.98 14.17 46.16 4.24
712 808 2.047560 GGAAAGGTGACCGGACCG 60.048 66.667 9.46 6.99 41.35 4.79
746 852 4.700365 GCGGCTTTTGGTGTCGCC 62.700 66.667 1.07 0.00 40.44 5.54
747 853 4.700365 GGCGGCTTTTGGTGTCGC 62.700 66.667 0.00 4.07 44.80 5.19
751 857 2.559330 GTACGGCGGCTTTTGGTG 59.441 61.111 13.24 0.00 0.00 4.17
789 899 1.681486 GAGGAAAGCGAGGGAGGGAG 61.681 65.000 0.00 0.00 0.00 4.30
790 900 1.686110 GAGGAAAGCGAGGGAGGGA 60.686 63.158 0.00 0.00 0.00 4.20
793 903 0.686112 AGAGGAGGAAAGCGAGGGAG 60.686 60.000 0.00 0.00 0.00 4.30
806 916 3.516981 TGATGCGAGAAAGAAGAGGAG 57.483 47.619 0.00 0.00 0.00 3.69
807 917 3.181471 GGATGATGCGAGAAAGAAGAGGA 60.181 47.826 0.00 0.00 0.00 3.71
831 964 4.452733 GGAGAAGACGGGTGGGCG 62.453 72.222 0.00 0.00 0.00 6.13
841 974 0.033991 CCGTGAGAGGGAGGAGAAGA 60.034 60.000 0.00 0.00 0.00 2.87
850 983 2.156343 GCTTTATAGCCGTGAGAGGG 57.844 55.000 0.00 0.00 41.74 4.30
880 1019 2.626780 GCTTGGGTCGGTTTCAGGC 61.627 63.158 0.00 0.00 0.00 4.85
881 1020 0.323629 TAGCTTGGGTCGGTTTCAGG 59.676 55.000 0.00 0.00 0.00 3.86
882 1021 1.439679 GTAGCTTGGGTCGGTTTCAG 58.560 55.000 0.00 0.00 0.00 3.02
883 1022 0.035739 GGTAGCTTGGGTCGGTTTCA 59.964 55.000 0.00 0.00 0.00 2.69
884 1023 0.675837 GGGTAGCTTGGGTCGGTTTC 60.676 60.000 0.00 0.00 0.00 2.78
885 1024 1.377612 GGGTAGCTTGGGTCGGTTT 59.622 57.895 0.00 0.00 0.00 3.27
886 1025 2.951101 CGGGTAGCTTGGGTCGGTT 61.951 63.158 0.00 0.00 0.00 4.44
887 1026 3.387947 CGGGTAGCTTGGGTCGGT 61.388 66.667 0.00 0.00 0.00 4.69
920 1059 2.280186 GGAAGGTATGCGGCGAGG 60.280 66.667 12.98 0.00 0.00 4.63
958 1097 3.052082 CACCAACTGGCAGAGGCG 61.052 66.667 23.66 12.55 42.47 5.52
963 1102 2.901840 ACGCACACCAACTGGCAG 60.902 61.111 14.16 14.16 39.32 4.85
964 1103 3.208383 CACGCACACCAACTGGCA 61.208 61.111 0.00 0.00 39.32 4.92
967 1106 2.715005 CACCACGCACACCAACTG 59.285 61.111 0.00 0.00 0.00 3.16
968 1107 2.515991 CCACCACGCACACCAACT 60.516 61.111 0.00 0.00 0.00 3.16
988 1127 4.166888 TCCCATCGCTCTGCCTGC 62.167 66.667 0.00 0.00 0.00 4.85
989 1128 2.108566 CTCCCATCGCTCTGCCTG 59.891 66.667 0.00 0.00 0.00 4.85
990 1129 3.160047 CCTCCCATCGCTCTGCCT 61.160 66.667 0.00 0.00 0.00 4.75
991 1130 3.157252 TCCTCCCATCGCTCTGCC 61.157 66.667 0.00 0.00 0.00 4.85
992 1131 2.420890 CTCCTCCCATCGCTCTGC 59.579 66.667 0.00 0.00 0.00 4.26
993 1132 2.506061 CCCTCCTCCCATCGCTCTG 61.506 68.421 0.00 0.00 0.00 3.35
994 1133 2.123077 CCCTCCTCCCATCGCTCT 60.123 66.667 0.00 0.00 0.00 4.09
1156 1295 2.506472 GATGGGGCCGAGGAAGAC 59.494 66.667 0.00 0.00 0.00 3.01
1335 1474 3.322466 AGGAAGGTGAGCACGGGG 61.322 66.667 0.00 0.00 0.00 5.73
1614 1765 1.673665 CAGCAGGAACCAGCAGGAC 60.674 63.158 0.35 0.00 38.69 3.85
1644 1795 1.732417 CGTAGGGGTACTTCCTCGCC 61.732 65.000 10.75 0.00 42.70 5.54
1811 1962 8.900781 AGTAATTCAGATGAATGAAGGATGTTG 58.099 33.333 8.76 0.00 43.41 3.33
1842 2012 8.766000 TGGATTCATTTCAGACAATTCATTTG 57.234 30.769 0.00 0.00 41.36 2.32
1855 2025 9.352784 GTACGAATTTCATTTGGATTCATTTCA 57.647 29.630 0.00 0.00 31.69 2.69
1857 2027 8.026607 ACGTACGAATTTCATTTGGATTCATTT 58.973 29.630 24.41 0.00 31.69 2.32
1858 2028 7.535139 ACGTACGAATTTCATTTGGATTCATT 58.465 30.769 24.41 0.00 31.69 2.57
1861 2031 5.963586 GGACGTACGAATTTCATTTGGATTC 59.036 40.000 24.41 2.44 0.00 2.52
1862 2032 5.413213 TGGACGTACGAATTTCATTTGGATT 59.587 36.000 24.41 0.00 0.00 3.01
1865 2035 4.436852 CCTGGACGTACGAATTTCATTTGG 60.437 45.833 24.41 5.79 0.00 3.28
1868 2038 3.267483 CCCTGGACGTACGAATTTCATT 58.733 45.455 24.41 0.00 0.00 2.57
1874 2055 1.305549 ACCCCCTGGACGTACGAAT 60.306 57.895 24.41 0.00 34.81 3.34
1876 2057 2.677524 CACCCCCTGGACGTACGA 60.678 66.667 24.41 0.00 34.81 3.43
1877 2058 3.766691 CCACCCCCTGGACGTACG 61.767 72.222 15.01 15.01 43.95 3.67
1878 2059 2.605601 ACCACCCCCTGGACGTAC 60.606 66.667 0.00 0.00 43.95 3.67
2044 2225 1.494824 GTGAGGTGTTGTCGTGGTAC 58.505 55.000 0.00 0.00 0.00 3.34
2045 2226 0.390124 GGTGAGGTGTTGTCGTGGTA 59.610 55.000 0.00 0.00 0.00 3.25
2046 2227 1.145377 GGTGAGGTGTTGTCGTGGT 59.855 57.895 0.00 0.00 0.00 4.16
2047 2228 0.250295 ATGGTGAGGTGTTGTCGTGG 60.250 55.000 0.00 0.00 0.00 4.94
2051 2232 1.880027 GTGGAATGGTGAGGTGTTGTC 59.120 52.381 0.00 0.00 0.00 3.18
2054 2235 2.290323 GCTAGTGGAATGGTGAGGTGTT 60.290 50.000 0.00 0.00 0.00 3.32
2076 2257 5.847304 TCTGAATCTGGATGTACTATGTGC 58.153 41.667 0.00 0.00 0.00 4.57
2078 2259 7.667575 AACTCTGAATCTGGATGTACTATGT 57.332 36.000 0.00 0.00 0.00 2.29
2104 2288 2.022240 GCAGGATCTCTCGGTGTCCC 62.022 65.000 0.00 0.00 0.00 4.46
2105 2289 1.323271 TGCAGGATCTCTCGGTGTCC 61.323 60.000 0.00 0.00 0.00 4.02
2111 2299 0.033228 GGATGGTGCAGGATCTCTCG 59.967 60.000 0.00 0.00 0.00 4.04
2147 2335 1.899814 GTGGACAGTGGACACTATGGA 59.100 52.381 4.41 0.00 40.20 3.41
2148 2336 1.066143 GGTGGACAGTGGACACTATGG 60.066 57.143 15.97 0.00 40.20 2.74
2177 2365 4.357947 TCAGGTGCCGTGTCGAGC 62.358 66.667 0.00 0.00 0.00 5.03
2198 2386 1.921887 CACTGCAAAAGCGCCATTATG 59.078 47.619 2.29 0.00 0.00 1.90
2248 2436 1.073025 CCCACAGCAGCAGGTACAA 59.927 57.895 0.00 0.00 0.00 2.41
2286 2474 1.580845 CGACTTTTGGAGGCTGCTGG 61.581 60.000 7.74 0.00 0.00 4.85
2304 2492 1.226802 CTCCGTGTCATCCTCTGCG 60.227 63.158 0.00 0.00 0.00 5.18
2331 2519 0.173255 GGTGTTGCTGCTGTTGTTGT 59.827 50.000 0.00 0.00 0.00 3.32
2334 2522 1.666209 GGTGGTGTTGCTGCTGTTGT 61.666 55.000 0.00 0.00 0.00 3.32
2338 2526 2.723746 GTGGTGGTGTTGCTGCTG 59.276 61.111 0.00 0.00 0.00 4.41
2339 2527 2.519302 GGTGGTGGTGTTGCTGCT 60.519 61.111 0.00 0.00 0.00 4.24
2346 2534 0.968393 GTTGTTGGTGGTGGTGGTGT 60.968 55.000 0.00 0.00 0.00 4.16
2347 2535 0.967887 TGTTGTTGGTGGTGGTGGTG 60.968 55.000 0.00 0.00 0.00 4.17
2348 2536 0.251832 TTGTTGTTGGTGGTGGTGGT 60.252 50.000 0.00 0.00 0.00 4.16
2349 2537 0.174617 GTTGTTGTTGGTGGTGGTGG 59.825 55.000 0.00 0.00 0.00 4.61
2355 2543 1.548269 ACCTGTTGTTGTTGTTGGTGG 59.452 47.619 0.00 0.00 0.00 4.61
2358 2546 1.067283 TGCACCTGTTGTTGTTGTTGG 60.067 47.619 0.00 0.00 0.00 3.77
2391 2579 0.191064 TCTTGAGTCAGGGTCAGGGT 59.809 55.000 1.97 0.00 0.00 4.34
2399 2587 2.873649 GCTTTCCCAGTCTTGAGTCAGG 60.874 54.545 0.00 0.00 0.00 3.86
2400 2588 2.224378 TGCTTTCCCAGTCTTGAGTCAG 60.224 50.000 0.00 0.00 0.00 3.51
2402 2590 2.037772 TCTGCTTTCCCAGTCTTGAGTC 59.962 50.000 0.00 0.00 34.47 3.36
2404 2592 2.614987 CCTCTGCTTTCCCAGTCTTGAG 60.615 54.545 0.00 0.00 34.47 3.02
2405 2593 1.349026 CCTCTGCTTTCCCAGTCTTGA 59.651 52.381 0.00 0.00 34.47 3.02
2406 2594 1.349026 TCCTCTGCTTTCCCAGTCTTG 59.651 52.381 0.00 0.00 34.47 3.02
2442 2633 1.324383 CTTGTTAACACCCACCCACC 58.676 55.000 8.07 0.00 0.00 4.61
2443 2634 1.679153 CACTTGTTAACACCCACCCAC 59.321 52.381 8.07 0.00 0.00 4.61
2461 2654 0.240945 ACTTATTTGCTGCACCGCAC 59.759 50.000 0.00 0.00 40.09 5.34
2462 2655 0.958091 AACTTATTTGCTGCACCGCA 59.042 45.000 0.00 0.00 38.31 5.69
2463 2656 1.200020 AGAACTTATTTGCTGCACCGC 59.800 47.619 0.00 0.00 0.00 5.68
2464 2657 2.159517 GGAGAACTTATTTGCTGCACCG 60.160 50.000 0.00 0.00 0.00 4.94
2465 2658 2.819608 TGGAGAACTTATTTGCTGCACC 59.180 45.455 0.00 0.00 0.00 5.01
2567 2760 2.352034 GCAGCTTCATGACATGACTGAG 59.648 50.000 27.74 19.81 39.39 3.35
2588 2782 3.056107 TGTTGTCCGGATCAGAACCTAAG 60.056 47.826 7.81 0.00 0.00 2.18
2603 2797 6.222038 TCATTATCCTACTGAGTGTTGTCC 57.778 41.667 0.00 0.00 0.00 4.02
2647 2841 4.872691 AGTGTCTGTGATGTTGCTATTAGC 59.127 41.667 8.80 8.80 42.82 3.09
2656 2850 9.628500 TCTAGTATACATAGTGTCTGTGATGTT 57.372 33.333 5.50 0.00 34.46 2.71
2663 2857 6.616049 GCGACGTCTAGTATACATAGTGTCTG 60.616 46.154 14.70 11.74 31.03 3.51
2667 2861 4.955617 GGCGACGTCTAGTATACATAGTG 58.044 47.826 14.70 4.84 0.00 2.74
2690 2884 1.451651 CTCGGAAAACATGCAAAACGC 59.548 47.619 0.00 0.00 42.89 4.84
2734 2936 7.075121 TGCAGTTAATTAGAACATTTCACGTG 58.925 34.615 9.94 9.94 0.00 4.49
2819 3021 6.879400 ACACTACTATTCCCTCTGCTAAAAG 58.121 40.000 0.00 0.00 0.00 2.27
2852 3056 6.434028 TCATCTTGGTTTATTTCAACTCCCAG 59.566 38.462 0.00 0.00 0.00 4.45
2880 3085 8.792830 ATAAAGGGTGTATCATTTCCGATATG 57.207 34.615 0.00 0.00 30.79 1.78
2934 3139 2.727777 CCTATGCGTTCGATCGAAGAA 58.272 47.619 29.79 18.39 43.58 2.52
2981 3186 7.526142 AGTCTACTGATTCTTGTGTCTTACA 57.474 36.000 0.00 0.00 37.56 2.41
3047 3263 4.399219 TGTTAGGGATCGACTGGATAGAG 58.601 47.826 0.00 0.00 34.82 2.43
3067 3283 6.094742 GGTTGAATTTTGGGTTGTTTGAATGT 59.905 34.615 0.00 0.00 0.00 2.71
3071 3287 4.019321 TGGGTTGAATTTTGGGTTGTTTGA 60.019 37.500 0.00 0.00 0.00 2.69
3072 3288 4.265073 TGGGTTGAATTTTGGGTTGTTTG 58.735 39.130 0.00 0.00 0.00 2.93
3077 3296 6.190587 TGAATTTTGGGTTGAATTTTGGGTT 58.809 32.000 0.00 0.00 0.00 4.11
3080 3299 6.460814 GGGTTGAATTTTGGGTTGAATTTTGG 60.461 38.462 0.00 0.00 0.00 3.28
3090 3309 5.760131 TGAATTTTGGGTTGAATTTTGGGT 58.240 33.333 0.00 0.00 0.00 4.51
3092 3311 7.565323 TCTTGAATTTTGGGTTGAATTTTGG 57.435 32.000 0.00 0.00 0.00 3.28
3097 3316 9.492973 CAACTATTCTTGAATTTTGGGTTGAAT 57.507 29.630 0.95 0.00 34.25 2.57
3099 3318 8.243961 TCAACTATTCTTGAATTTTGGGTTGA 57.756 30.769 0.95 10.72 37.54 3.18
3102 3321 8.250143 AGTTCAACTATTCTTGAATTTTGGGT 57.750 30.769 0.95 0.00 41.17 4.51
3110 3329 9.230122 TGATGCAATAGTTCAACTATTCTTGAA 57.770 29.630 18.36 6.22 45.49 2.69
3117 3336 9.979578 TTTTTGTTGATGCAATAGTTCAACTAT 57.020 25.926 23.49 4.03 45.93 2.12
3144 3383 4.610945 CGTTCTTCTGAATTTTGGCTTGT 58.389 39.130 0.00 0.00 34.40 3.16
3145 3384 3.426525 GCGTTCTTCTGAATTTTGGCTTG 59.573 43.478 0.00 0.00 34.40 4.01
3148 3387 3.011949 TGCGTTCTTCTGAATTTTGGC 57.988 42.857 0.00 0.00 34.40 4.52
3149 3388 4.984161 ACAATGCGTTCTTCTGAATTTTGG 59.016 37.500 0.00 0.00 34.40 3.28
3150 3389 5.107760 CCACAATGCGTTCTTCTGAATTTTG 60.108 40.000 0.00 0.00 34.40 2.44
3165 3409 3.564511 CAAAAGAAGGTACCACAATGCG 58.435 45.455 15.94 0.00 0.00 4.73
3173 3417 1.541588 CTGGCTGCAAAAGAAGGTACC 59.458 52.381 2.73 2.73 0.00 3.34
3193 3437 2.554142 TCGATGAGATCATGTTGCCAC 58.446 47.619 0.00 0.00 36.57 5.01
3197 3441 5.144692 AGGGTATCGATGAGATCATGTTG 57.855 43.478 8.54 0.00 40.66 3.33
3199 3443 5.083122 AGAAGGGTATCGATGAGATCATGT 58.917 41.667 8.54 0.00 40.66 3.21
3212 3456 1.439543 AGGGCATGGAGAAGGGTATC 58.560 55.000 0.00 0.00 0.00 2.24
3236 3480 1.274167 ACCTACGTGTACATGTGTGGG 59.726 52.381 29.30 26.30 32.99 4.61
3251 3495 3.067833 GCTGAAGAAGGACAACACCTAC 58.932 50.000 0.00 0.00 39.62 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.