Multiple sequence alignment - TraesCS4A01G472100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G472100 chr4A 100.000 3377 0 0 1 3377 732514094 732510718 0.000000e+00 6237.0
1 TraesCS4A01G472100 chr4A 98.667 75 1 0 860 934 148761212 148761286 2.110000e-27 134.0
2 TraesCS4A01G472100 chr4A 97.260 73 1 1 860 932 686938922 686938993 4.580000e-24 122.0
3 TraesCS4A01G472100 chr7D 90.714 2326 159 26 933 3235 7298988 7296697 0.000000e+00 3046.0
4 TraesCS4A01G472100 chr7D 84.041 777 73 27 4 745 7299887 7299127 0.000000e+00 701.0
5 TraesCS4A01G472100 chr7D 89.899 99 8 2 758 856 7299073 7298977 3.540000e-25 126.0
6 TraesCS4A01G472100 chr7A 90.797 1869 141 19 935 2781 8256162 8254303 0.000000e+00 2470.0
7 TraesCS4A01G472100 chr7A 87.719 171 9 5 138 299 8257237 8257070 4.450000e-44 189.0
8 TraesCS4A01G472100 chr7A 92.683 123 9 0 2802 2924 8253702 8253580 9.630000e-41 178.0
9 TraesCS4A01G472100 chr7A 79.186 221 38 6 454 674 8256549 8256337 2.720000e-31 147.0
10 TraesCS4A01G472100 chr7B 81.720 279 23 18 177 435 745129274 745129004 1.230000e-49 207.0
11 TraesCS4A01G472100 chr7B 97.297 74 2 0 860 933 657549592 657549519 3.540000e-25 126.0
12 TraesCS4A01G472100 chr1B 81.720 279 24 19 175 434 37020871 37021141 1.230000e-49 207.0
13 TraesCS4A01G472100 chr1B 80.287 279 30 17 175 435 651060562 651060833 1.600000e-43 187.0
14 TraesCS4A01G472100 chr1B 82.222 180 18 11 265 434 35982190 35982365 3.510000e-30 143.0
15 TraesCS4A01G472100 chr1B 97.260 73 2 0 860 932 407249554 407249626 1.270000e-24 124.0
16 TraesCS4A01G472100 chr3B 81.176 255 23 18 192 429 489088180 489088426 7.440000e-42 182.0
17 TraesCS4A01G472100 chr4B 80.156 257 25 20 200 435 662548399 662548650 5.800000e-38 169.0
18 TraesCS4A01G472100 chr4B 81.111 180 20 11 265 434 665664 665489 7.600000e-27 132.0
19 TraesCS4A01G472100 chr4B 96.104 77 2 1 860 935 481521269 481521345 1.270000e-24 124.0
20 TraesCS4A01G472100 chr5B 98.630 73 1 0 860 932 334291000 334291072 2.730000e-26 130.0
21 TraesCS4A01G472100 chr4D 98.571 70 1 0 860 929 506429996 506430065 1.270000e-24 124.0
22 TraesCS4A01G472100 chr2D 97.260 73 2 0 860 932 468951229 468951157 1.270000e-24 124.0
23 TraesCS4A01G472100 chr1A 97.260 73 2 0 860 932 589369514 589369586 1.270000e-24 124.0
24 TraesCS4A01G472100 chr6B 79.798 99 14 5 339 431 139852367 139852465 2.170000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G472100 chr4A 732510718 732514094 3376 True 6237 6237 100.00000 1 3377 1 chr4A.!!$R1 3376
1 TraesCS4A01G472100 chr7D 7296697 7299887 3190 True 1291 3046 88.21800 4 3235 3 chr7D.!!$R1 3231
2 TraesCS4A01G472100 chr7A 8253580 8257237 3657 True 746 2470 87.59625 138 2924 4 chr7A.!!$R1 2786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 1418 0.249114 GCAAAAGCCCGGTTCGAAAA 60.249 50.0 0.00 0.0 0.00 2.29 F
1051 1551 0.040067 GAAGCAAACCTTGGAGCACG 60.040 55.0 0.00 0.0 32.78 5.34 F
1941 2441 0.099613 CGACGGACTCATGGTCAGAG 59.900 60.0 16.85 10.0 46.16 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1770 2270 0.662619 TCGGCAGAGTTTGTGCTTTG 59.337 50.0 0.00 0.0 40.97 2.77 R
2026 2526 0.951040 GAACAAGTCGGTGGCTCCAG 60.951 60.0 6.39 0.0 35.57 3.86 R
3059 4151 0.036306 CCCTACCAGTTCACCACCAC 59.964 60.0 0.00 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.231692 AGAAAGAAAGAGAAAGGGAGAAAAAG 57.768 34.615 0.00 0.00 0.00 2.27
52 54 8.563123 AGAAAAAGCTCCCAAAATAGTAGTAC 57.437 34.615 0.00 0.00 0.00 2.73
98 100 2.618053 GTTACTTGGTCACCATCGAGG 58.382 52.381 0.00 0.00 45.67 4.63
122 124 2.743928 CAGAGCCACGCAACTCCC 60.744 66.667 0.00 0.00 33.18 4.30
123 125 3.241530 AGAGCCACGCAACTCCCA 61.242 61.111 0.00 0.00 33.18 4.37
124 126 3.050275 GAGCCACGCAACTCCCAC 61.050 66.667 0.00 0.00 0.00 4.61
125 127 3.825160 GAGCCACGCAACTCCCACA 62.825 63.158 0.00 0.00 0.00 4.17
126 128 3.660111 GCCACGCAACTCCCACAC 61.660 66.667 0.00 0.00 0.00 3.82
127 129 3.345808 CCACGCAACTCCCACACG 61.346 66.667 0.00 0.00 0.00 4.49
128 130 2.279851 CACGCAACTCCCACACGA 60.280 61.111 0.00 0.00 0.00 4.35
381 401 4.851214 GCCTCGGCCTCTCCCTCT 62.851 72.222 0.00 0.00 34.56 3.69
382 402 2.520741 CCTCGGCCTCTCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
384 404 3.347590 TCGGCCTCTCCCTCTCCA 61.348 66.667 0.00 0.00 0.00 3.86
385 405 3.151022 CGGCCTCTCCCTCTCCAC 61.151 72.222 0.00 0.00 0.00 4.02
388 408 2.443016 CCTCTCCCTCTCCACCGG 60.443 72.222 0.00 0.00 0.00 5.28
480 907 9.268268 TGTATTTTTATTCAGTCTTTCTGTCGT 57.732 29.630 0.00 0.00 43.97 4.34
497 924 1.663643 TCGTACGGCATGAATTTGAGC 59.336 47.619 16.52 0.00 0.00 4.26
512 939 0.457851 TGAGCCCGTTTTGGTTGTTG 59.542 50.000 0.00 0.00 35.15 3.33
520 947 2.786578 CGTTTTGGTTGTTGGAATGACG 59.213 45.455 0.00 0.00 0.00 4.35
530 957 3.436704 TGTTGGAATGACGAATCTCTTGC 59.563 43.478 0.00 0.00 0.00 4.01
533 960 2.029728 GGAATGACGAATCTCTTGCGTG 59.970 50.000 0.00 0.00 38.51 5.34
542 969 5.163953 ACGAATCTCTTGCGTGTTAATCTTG 60.164 40.000 0.00 0.00 36.83 3.02
547 974 5.050363 TCTCTTGCGTGTTAATCTTGTTGTC 60.050 40.000 0.00 0.00 0.00 3.18
572 999 0.604511 AAAGGAACTAACCGTGGCCG 60.605 55.000 0.00 0.00 38.49 6.13
577 1004 0.392060 AACTAACCGTGGCCGATTCC 60.392 55.000 0.00 0.00 35.63 3.01
586 1013 1.069258 GGCCGATTCCTCGTTAGGG 59.931 63.158 0.00 0.00 43.84 3.53
588 1015 1.299926 CCGATTCCTCGTTAGGGCG 60.300 63.158 0.00 0.00 43.84 6.13
590 1017 0.314302 CGATTCCTCGTTAGGGCGAT 59.686 55.000 0.00 0.00 43.84 4.58
591 1018 1.784525 GATTCCTCGTTAGGGCGATG 58.215 55.000 0.00 0.00 43.84 3.84
607 1034 3.492313 GCGATGTTTTCTTGCAGTTAGG 58.508 45.455 0.00 0.00 0.00 2.69
620 1047 1.065418 CAGTTAGGGGATTCGGCTGTT 60.065 52.381 0.00 0.00 0.00 3.16
626 1053 0.811281 GGGATTCGGCTGTTTCCTTG 59.189 55.000 13.74 0.00 0.00 3.61
662 1093 6.259608 AGCTGTGAATGTGATAGAACAATAGC 59.740 38.462 0.00 0.00 32.81 2.97
668 1099 5.023533 TGTGATAGAACAATAGCCACTCC 57.976 43.478 0.00 0.00 0.00 3.85
669 1100 4.716784 TGTGATAGAACAATAGCCACTCCT 59.283 41.667 0.00 0.00 0.00 3.69
670 1101 5.053145 GTGATAGAACAATAGCCACTCCTG 58.947 45.833 0.00 0.00 0.00 3.86
678 1128 0.324943 TAGCCACTCCTGCTTGGTTC 59.675 55.000 0.00 0.00 40.23 3.62
681 1131 0.322008 CCACTCCTGCTTGGTTCCTC 60.322 60.000 0.00 0.00 37.07 3.71
692 1142 0.919289 TGGTTCCTCCCCAAGATCCC 60.919 60.000 0.00 0.00 34.77 3.85
704 1154 1.069823 CAAGATCCCCATGGTCTCTCG 59.930 57.143 11.73 0.00 0.00 4.04
719 1169 2.035193 TCTCTCGCATGCTAAGATGGTC 59.965 50.000 17.13 0.00 0.00 4.02
727 1177 4.570772 GCATGCTAAGATGGTCGAAACTTA 59.429 41.667 11.37 0.00 0.00 2.24
728 1178 5.502544 GCATGCTAAGATGGTCGAAACTTAC 60.503 44.000 11.37 0.00 0.00 2.34
733 1183 6.019479 GCTAAGATGGTCGAAACTTACATCTG 60.019 42.308 6.28 0.00 45.30 2.90
734 1184 4.184629 AGATGGTCGAAACTTACATCTGC 58.815 43.478 4.83 0.00 44.60 4.26
745 1195 7.541091 CGAAACTTACATCTGCTCAAGTAGTAA 59.459 37.037 0.00 0.00 31.20 2.24
746 1196 9.204570 GAAACTTACATCTGCTCAAGTAGTAAA 57.795 33.333 0.00 0.00 31.20 2.01
747 1197 9.555727 AAACTTACATCTGCTCAAGTAGTAAAA 57.444 29.630 0.00 0.00 31.20 1.52
749 1199 9.726438 ACTTACATCTGCTCAAGTAGTAAAAAT 57.274 29.630 0.00 0.00 31.06 1.82
752 1202 8.854614 ACATCTGCTCAAGTAGTAAAAATTCT 57.145 30.769 0.00 0.00 0.00 2.40
753 1203 9.944376 ACATCTGCTCAAGTAGTAAAAATTCTA 57.056 29.630 0.00 0.00 0.00 2.10
756 1206 9.998106 TCTGCTCAAGTAGTAAAAATTCTAGTT 57.002 29.630 0.00 0.00 32.22 2.24
794 1285 4.852134 TTGAATTGTTGTCCACCATCAG 57.148 40.909 0.00 0.00 0.00 2.90
796 1287 4.468713 TGAATTGTTGTCCACCATCAGAA 58.531 39.130 0.00 0.00 0.00 3.02
814 1305 6.857437 TCAGAATTCAGAGATGGAGTACAA 57.143 37.500 8.44 0.00 0.00 2.41
825 1316 7.607991 CAGAGATGGAGTACAAATTTACAAGGT 59.392 37.037 0.00 0.00 0.00 3.50
828 1319 8.822805 AGATGGAGTACAAATTTACAAGGTAGA 58.177 33.333 0.00 0.00 0.00 2.59
829 1320 8.788325 ATGGAGTACAAATTTACAAGGTAGAC 57.212 34.615 0.00 0.00 0.00 2.59
831 1322 8.380099 TGGAGTACAAATTTACAAGGTAGACAT 58.620 33.333 0.00 0.00 0.00 3.06
833 1324 8.561738 AGTACAAATTTACAAGGTAGACATGG 57.438 34.615 0.00 0.00 0.00 3.66
856 1347 2.678336 GCTGCCTATAAGTGAACACCAC 59.322 50.000 1.11 0.00 46.03 4.16
871 1362 2.951642 ACACCACATGTTTCAGTTCCTG 59.048 45.455 0.00 0.00 38.98 3.86
872 1363 3.213506 CACCACATGTTTCAGTTCCTGA 58.786 45.455 0.00 0.00 38.87 3.86
873 1364 3.251729 CACCACATGTTTCAGTTCCTGAG 59.748 47.826 0.00 0.00 41.75 3.35
874 1365 3.136443 ACCACATGTTTCAGTTCCTGAGA 59.864 43.478 0.00 0.00 41.75 3.27
875 1366 3.499918 CCACATGTTTCAGTTCCTGAGAC 59.500 47.826 0.00 7.71 43.18 3.36
880 1371 4.780815 TGTTTCAGTTCCTGAGACATTGT 58.219 39.130 12.09 0.00 45.98 2.71
881 1372 5.924356 TGTTTCAGTTCCTGAGACATTGTA 58.076 37.500 12.09 0.00 45.98 2.41
882 1373 6.533730 TGTTTCAGTTCCTGAGACATTGTAT 58.466 36.000 12.09 0.00 45.98 2.29
883 1374 6.998074 TGTTTCAGTTCCTGAGACATTGTATT 59.002 34.615 12.09 0.00 45.98 1.89
884 1375 7.502226 TGTTTCAGTTCCTGAGACATTGTATTT 59.498 33.333 12.09 0.00 45.98 1.40
885 1376 7.672983 TTCAGTTCCTGAGACATTGTATTTC 57.327 36.000 0.00 0.00 41.75 2.17
886 1377 6.173339 TCAGTTCCTGAGACATTGTATTTCC 58.827 40.000 0.00 0.00 35.39 3.13
887 1378 5.063944 CAGTTCCTGAGACATTGTATTTCCG 59.936 44.000 0.00 0.00 32.44 4.30
888 1379 4.819105 TCCTGAGACATTGTATTTCCGT 57.181 40.909 0.00 0.00 0.00 4.69
889 1380 5.160607 TCCTGAGACATTGTATTTCCGTT 57.839 39.130 0.00 0.00 0.00 4.44
890 1381 6.288941 TCCTGAGACATTGTATTTCCGTTA 57.711 37.500 0.00 0.00 0.00 3.18
891 1382 6.884832 TCCTGAGACATTGTATTTCCGTTAT 58.115 36.000 0.00 0.00 0.00 1.89
892 1383 6.761242 TCCTGAGACATTGTATTTCCGTTATG 59.239 38.462 0.00 0.00 0.00 1.90
893 1384 6.761242 CCTGAGACATTGTATTTCCGTTATGA 59.239 38.462 0.00 0.00 0.00 2.15
894 1385 7.279981 CCTGAGACATTGTATTTCCGTTATGAA 59.720 37.037 0.00 0.00 0.00 2.57
895 1386 8.554835 TGAGACATTGTATTTCCGTTATGAAA 57.445 30.769 0.00 0.00 38.51 2.69
896 1387 8.664798 TGAGACATTGTATTTCCGTTATGAAAG 58.335 33.333 0.00 0.00 37.63 2.62
897 1388 8.561738 AGACATTGTATTTCCGTTATGAAAGT 57.438 30.769 0.00 0.00 37.63 2.66
898 1389 9.661563 AGACATTGTATTTCCGTTATGAAAGTA 57.338 29.630 0.00 0.00 37.63 2.24
903 1394 9.451002 TTGTATTTCCGTTATGAAAGTAATGGA 57.549 29.630 4.01 4.01 44.20 3.41
907 1398 6.995511 TCCGTTATGAAAGTAATGGAAAGG 57.004 37.500 5.39 0.00 43.39 3.11
908 1399 5.883673 TCCGTTATGAAAGTAATGGAAAGGG 59.116 40.000 5.39 0.00 43.39 3.95
909 1400 5.449999 CCGTTATGAAAGTAATGGAAAGGGC 60.450 44.000 0.00 0.00 41.32 5.19
910 1401 5.124776 CGTTATGAAAGTAATGGAAAGGGCA 59.875 40.000 0.00 0.00 0.00 5.36
911 1402 6.349777 CGTTATGAAAGTAATGGAAAGGGCAA 60.350 38.462 0.00 0.00 0.00 4.52
912 1403 7.382898 GTTATGAAAGTAATGGAAAGGGCAAA 58.617 34.615 0.00 0.00 0.00 3.68
913 1404 5.878406 TGAAAGTAATGGAAAGGGCAAAA 57.122 34.783 0.00 0.00 0.00 2.44
914 1405 5.852827 TGAAAGTAATGGAAAGGGCAAAAG 58.147 37.500 0.00 0.00 0.00 2.27
915 1406 3.961480 AGTAATGGAAAGGGCAAAAGC 57.039 42.857 0.00 0.00 0.00 3.51
916 1407 2.567169 AGTAATGGAAAGGGCAAAAGCC 59.433 45.455 0.00 0.00 0.00 4.35
923 1414 4.050934 GGGCAAAAGCCCGGTTCG 62.051 66.667 10.15 0.00 40.54 3.95
924 1415 2.981350 GGCAAAAGCCCGGTTCGA 60.981 61.111 0.00 0.00 0.00 3.71
925 1416 2.557372 GGCAAAAGCCCGGTTCGAA 61.557 57.895 0.00 0.00 0.00 3.71
926 1417 1.360911 GCAAAAGCCCGGTTCGAAA 59.639 52.632 0.00 0.00 0.00 3.46
927 1418 0.249114 GCAAAAGCCCGGTTCGAAAA 60.249 50.000 0.00 0.00 0.00 2.29
928 1419 1.803252 GCAAAAGCCCGGTTCGAAAAA 60.803 47.619 0.00 0.00 0.00 1.94
956 1447 5.046910 GTGAACACCACACTGATATTTGG 57.953 43.478 0.00 0.00 45.03 3.28
957 1448 3.505680 TGAACACCACACTGATATTTGGC 59.494 43.478 0.00 0.00 31.76 4.52
981 1472 5.941555 TTTCTTTTGGGCCTTTTTGTAGA 57.058 34.783 4.53 0.00 0.00 2.59
997 1488 9.884465 CTTTTTGTAGATACAAGAAGTTGGAAG 57.116 33.333 20.02 2.79 45.63 3.46
1025 1525 1.975327 CGTCTCTCAGCTTCCCCAA 59.025 57.895 0.00 0.00 0.00 4.12
1041 1541 0.249280 CCAACAACGGGAAGCAAACC 60.249 55.000 0.00 0.00 0.00 3.27
1051 1551 0.040067 GAAGCAAACCTTGGAGCACG 60.040 55.000 0.00 0.00 32.78 5.34
1065 1565 2.809601 CACGGGGAAGCGTCGAAG 60.810 66.667 0.00 0.00 0.00 3.79
1091 1591 0.963856 TCCTCGAAGAAGCTACGCCA 60.964 55.000 0.00 0.00 34.09 5.69
1092 1592 0.802607 CCTCGAAGAAGCTACGCCAC 60.803 60.000 0.00 0.00 34.09 5.01
1131 1631 0.976073 TGATTCCTGACCTCCCGGAC 60.976 60.000 0.73 0.00 0.00 4.79
1171 1671 2.825836 CGAGGATGCCAAGGGTGC 60.826 66.667 0.00 0.00 0.00 5.01
1190 1690 2.103094 TGCGGTATCTTAGCAGCAAGAT 59.897 45.455 18.33 18.33 45.18 2.40
1221 1721 3.626996 CTGGAAGGCCGCCATCACA 62.627 63.158 18.97 10.43 36.79 3.58
1224 1724 3.628646 GAAGGCCGCCATCACAGGT 62.629 63.158 13.15 0.00 0.00 4.00
1225 1725 3.925630 AAGGCCGCCATCACAGGTG 62.926 63.158 13.15 0.00 38.90 4.00
1231 1731 2.042831 GCCATCACAGGTGTGGAGC 61.043 63.158 18.75 7.12 45.65 4.70
1257 1757 1.377856 GGTGAGGAAGGAGCTTGGC 60.378 63.158 0.00 0.00 0.00 4.52
1284 1784 7.389053 GTGGATGAGGAATGGATTTACATACTC 59.611 40.741 0.00 0.00 36.41 2.59
1297 1797 3.385749 ATACTCACCAAGGCGGCCG 62.386 63.158 24.05 24.05 39.03 6.13
1317 1817 3.058160 GGCAAGCTGTCGTGGCAT 61.058 61.111 4.90 0.00 44.33 4.40
1341 1841 3.880846 GATCCGCTTTGCAGCCGG 61.881 66.667 13.55 13.55 44.06 6.13
1407 1907 0.240145 GTTTAGGCGGTTTGGTGAGC 59.760 55.000 0.00 0.00 0.00 4.26
1430 1930 2.038295 CTGGGATTAGGATCTCTGGTGC 59.962 54.545 0.00 0.00 33.67 5.01
1431 1931 2.334023 GGGATTAGGATCTCTGGTGCT 58.666 52.381 0.00 0.00 32.66 4.40
1447 1947 2.875317 GGTGCTATTAGAGGCTTGCTTC 59.125 50.000 0.00 0.00 0.00 3.86
1464 1964 0.322456 TTCGCCAGGAGGATTGGTTG 60.322 55.000 0.00 0.00 38.02 3.77
1488 1988 3.706086 ACAAGATTCCCTTTTGTGCTTGT 59.294 39.130 0.00 0.00 39.47 3.16
1522 2022 4.573900 GATCGATGGATGCCTCTATGTTT 58.426 43.478 0.54 0.00 31.51 2.83
1536 2036 0.898326 ATGTTTTGGGCGGGTTCTCC 60.898 55.000 0.00 0.00 0.00 3.71
1548 2048 1.739562 GTTCTCCAGAGCCACAGCG 60.740 63.158 0.00 0.00 46.67 5.18
1557 2057 1.160137 GAGCCACAGCGATCAAAAGT 58.840 50.000 0.00 0.00 46.67 2.66
1677 2177 2.314647 CGTTGTCGGCGGTGTCATT 61.315 57.895 7.21 0.00 0.00 2.57
1728 2228 0.588252 CTGCTGAAGTGTTTGACCCG 59.412 55.000 0.00 0.00 0.00 5.28
1770 2270 0.899717 TGCCAAACATGCCCTTCTCC 60.900 55.000 0.00 0.00 0.00 3.71
1803 2303 2.825836 CCGACTGCATTCCTGGCC 60.826 66.667 0.00 0.00 0.00 5.36
1839 2339 3.707793 GGTTGCTACAGGAATAGTCTCG 58.292 50.000 0.00 0.00 0.00 4.04
1870 2370 0.177604 GCTGTATGTGCCTCAGAGCT 59.822 55.000 0.00 0.00 0.00 4.09
1872 2372 2.277969 CTGTATGTGCCTCAGAGCTTG 58.722 52.381 0.00 0.00 0.00 4.01
1884 2384 0.179000 AGAGCTTGTATTCCTGGCCG 59.821 55.000 0.00 0.00 0.00 6.13
1902 2402 2.223711 GCCGTTCTTTGTTGATGTTGGT 60.224 45.455 0.00 0.00 0.00 3.67
1914 2414 0.560688 ATGTTGGTGGGGAGGTGTTT 59.439 50.000 0.00 0.00 0.00 2.83
1941 2441 0.099613 CGACGGACTCATGGTCAGAG 59.900 60.000 16.85 10.00 46.16 3.35
2008 2508 5.451242 GGGACAAAATTAAGTGCTGTTGTGA 60.451 40.000 0.00 0.00 29.75 3.58
2050 2550 0.798776 GCCACCGACTTGTTCTGATG 59.201 55.000 0.00 0.00 0.00 3.07
2052 2552 1.001974 CCACCGACTTGTTCTGATGGA 59.998 52.381 0.00 0.00 0.00 3.41
2066 2566 5.028549 TCTGATGGAGGCAAGATAAAGAC 57.971 43.478 0.00 0.00 0.00 3.01
2070 2570 5.070446 TGATGGAGGCAAGATAAAGACGTAT 59.930 40.000 0.00 0.00 0.00 3.06
2076 2576 4.386049 GGCAAGATAAAGACGTATGATCCG 59.614 45.833 0.00 0.00 0.00 4.18
2079 2579 6.129062 GCAAGATAAAGACGTATGATCCGAAG 60.129 42.308 0.00 0.00 0.00 3.79
2104 2604 4.012374 AGATACATGGAAGGCTGTTGTTG 58.988 43.478 0.00 0.00 0.00 3.33
2130 2630 1.008538 GCCTGTTGGTGACTTTGCG 60.009 57.895 0.00 0.00 35.27 4.85
2271 2771 1.883021 CTCGACATGCCAAAACCCC 59.117 57.895 0.00 0.00 0.00 4.95
2283 2783 1.812571 CAAAACCCCGATGTCTCTTGG 59.187 52.381 0.00 0.00 0.00 3.61
2284 2784 0.322546 AAACCCCGATGTCTCTTGGC 60.323 55.000 0.00 0.00 0.00 4.52
2285 2785 2.190578 CCCCGATGTCTCTTGGCC 59.809 66.667 0.00 0.00 0.00 5.36
2286 2786 2.370445 CCCCGATGTCTCTTGGCCT 61.370 63.158 3.32 0.00 0.00 5.19
2287 2787 1.604378 CCCGATGTCTCTTGGCCTT 59.396 57.895 3.32 0.00 0.00 4.35
2288 2788 0.035056 CCCGATGTCTCTTGGCCTTT 60.035 55.000 3.32 0.00 0.00 3.11
2300 2800 3.458653 GCCTTTGGAGCAAGGCAA 58.541 55.556 18.11 0.00 45.99 4.52
2524 3024 3.365666 CCTCAACAGCACATGTGAATGTC 60.366 47.826 29.80 11.05 43.00 3.06
2553 3054 2.153645 TGTAATCTTGCCAGCAGTGTG 58.846 47.619 0.00 0.00 0.00 3.82
2680 3190 1.320344 AACATCATGCAGCCTGCTGG 61.320 55.000 18.96 9.94 45.31 4.85
2683 3193 0.465097 ATCATGCAGCCTGCTGGTAC 60.465 55.000 18.96 4.95 45.31 3.34
2689 3199 0.250901 CAGCCTGCTGGTACTTTGGT 60.251 55.000 11.31 0.00 40.17 3.67
2725 3236 6.877611 TCTGGTTTCTTGATGGAAAGTAAC 57.122 37.500 0.00 0.00 36.96 2.50
2732 3243 5.313712 TCTTGATGGAAAGTAACCTGTTCC 58.686 41.667 0.00 0.00 41.09 3.62
2751 3262 6.916440 TGTTCCAGTTCTGAAATCATCATTG 58.084 36.000 1.00 0.00 37.44 2.82
2756 3267 5.064325 CAGTTCTGAAATCATCATTGCGAGA 59.936 40.000 0.00 0.00 37.44 4.04
2757 3268 5.645067 AGTTCTGAAATCATCATTGCGAGAA 59.355 36.000 0.00 0.00 37.44 2.87
2759 3270 5.181009 TCTGAAATCATCATTGCGAGAAGT 58.819 37.500 0.00 0.00 37.44 3.01
2772 3283 7.603784 TCATTGCGAGAAGTATGCATATGTATT 59.396 33.333 11.75 3.14 38.60 1.89
2793 3304 5.476091 TTTGTTTTCTGAACTTGTTGGGT 57.524 34.783 0.00 0.00 0.00 4.51
2869 3960 2.416547 AGCAATGTACACACGCAATCTC 59.583 45.455 13.61 0.00 31.97 2.75
2919 4010 3.337694 TGTTTGGTTCTACCCCGTATG 57.662 47.619 0.00 0.00 37.50 2.39
2936 4027 5.179368 CCCGTATGTAACTTGGCATAAGATG 59.821 44.000 6.92 0.00 31.77 2.90
2939 4030 6.146184 CGTATGTAACTTGGCATAAGATGGAG 59.854 42.308 6.92 0.00 31.77 3.86
2943 4034 6.599244 TGTAACTTGGCATAAGATGGAGAAAG 59.401 38.462 6.92 0.00 0.00 2.62
2944 4035 5.184892 ACTTGGCATAAGATGGAGAAAGT 57.815 39.130 6.92 0.00 0.00 2.66
2945 4036 5.189180 ACTTGGCATAAGATGGAGAAAGTC 58.811 41.667 6.92 0.00 0.00 3.01
2946 4037 4.842531 TGGCATAAGATGGAGAAAGTCA 57.157 40.909 0.00 0.00 0.00 3.41
2948 4039 5.759059 TGGCATAAGATGGAGAAAGTCATT 58.241 37.500 0.00 0.00 0.00 2.57
2949 4040 5.591472 TGGCATAAGATGGAGAAAGTCATTG 59.409 40.000 0.00 0.00 0.00 2.82
2950 4041 5.009410 GGCATAAGATGGAGAAAGTCATTGG 59.991 44.000 0.00 0.00 0.00 3.16
2951 4042 5.506982 GCATAAGATGGAGAAAGTCATTGGC 60.507 44.000 0.00 0.00 0.00 4.52
2953 4044 3.883669 AGATGGAGAAAGTCATTGGCTC 58.116 45.455 0.00 0.00 0.00 4.70
2954 4045 3.265221 AGATGGAGAAAGTCATTGGCTCA 59.735 43.478 0.00 0.00 0.00 4.26
2957 4048 3.760151 TGGAGAAAGTCATTGGCTCATTG 59.240 43.478 0.00 0.00 0.00 2.82
2958 4049 3.428589 GGAGAAAGTCATTGGCTCATTGC 60.429 47.826 0.00 0.00 41.94 3.56
2959 4050 3.428532 AGAAAGTCATTGGCTCATTGCT 58.571 40.909 0.00 0.00 42.39 3.91
2960 4051 3.830755 AGAAAGTCATTGGCTCATTGCTT 59.169 39.130 0.00 0.00 42.39 3.91
2961 4052 3.863142 AAGTCATTGGCTCATTGCTTC 57.137 42.857 0.00 0.00 42.39 3.86
2962 4053 1.741706 AGTCATTGGCTCATTGCTTCG 59.258 47.619 0.00 0.00 42.39 3.79
2963 4054 1.097232 TCATTGGCTCATTGCTTCGG 58.903 50.000 0.00 0.00 42.39 4.30
2964 4055 0.526954 CATTGGCTCATTGCTTCGGC 60.527 55.000 0.00 0.00 42.39 5.54
2965 4056 0.682209 ATTGGCTCATTGCTTCGGCT 60.682 50.000 0.00 0.00 42.39 5.52
2966 4057 0.895100 TTGGCTCATTGCTTCGGCTT 60.895 50.000 0.00 0.00 42.39 4.35
2967 4058 1.308069 TGGCTCATTGCTTCGGCTTC 61.308 55.000 0.00 0.00 42.39 3.86
2968 4059 1.061570 GCTCATTGCTTCGGCTTCG 59.938 57.895 0.00 0.00 42.37 3.79
2969 4060 1.717937 CTCATTGCTTCGGCTTCGG 59.282 57.895 0.00 0.00 42.37 4.30
2970 4061 1.003839 TCATTGCTTCGGCTTCGGT 60.004 52.632 0.00 0.00 42.37 4.69
2971 4062 1.019278 TCATTGCTTCGGCTTCGGTC 61.019 55.000 0.00 0.00 42.37 4.79
2972 4063 1.745489 ATTGCTTCGGCTTCGGTCC 60.745 57.895 0.00 0.00 42.37 4.46
2973 4064 2.463589 ATTGCTTCGGCTTCGGTCCA 62.464 55.000 0.00 0.00 42.37 4.02
2990 4081 6.778821 TCGGTCCAAATATATCACCATGAAT 58.221 36.000 0.00 0.00 0.00 2.57
3013 4105 6.109320 TGTAGTTTGTTACAGGTTTTGACG 57.891 37.500 0.00 0.00 0.00 4.35
3020 4112 4.998033 TGTTACAGGTTTTGACGATGCATA 59.002 37.500 0.00 0.00 0.00 3.14
3024 4116 4.572389 ACAGGTTTTGACGATGCATATCTC 59.428 41.667 0.00 0.00 0.00 2.75
3038 4130 3.627577 GCATATCTCGACACATTTGGGTT 59.372 43.478 0.00 0.00 0.00 4.11
3059 4151 5.469760 GGTTTGAATTCCTGAATTTGTTGGG 59.530 40.000 2.27 0.00 40.77 4.12
3060 4152 5.885449 TTGAATTCCTGAATTTGTTGGGT 57.115 34.783 2.27 0.00 40.77 4.51
3061 4153 5.212532 TGAATTCCTGAATTTGTTGGGTG 57.787 39.130 2.27 0.00 40.77 4.61
3062 4154 4.040217 TGAATTCCTGAATTTGTTGGGTGG 59.960 41.667 2.27 0.00 40.77 4.61
3064 4156 2.315176 TCCTGAATTTGTTGGGTGGTG 58.685 47.619 0.00 0.00 0.00 4.17
3065 4157 1.344114 CCTGAATTTGTTGGGTGGTGG 59.656 52.381 0.00 0.00 0.00 4.61
3067 4159 1.759445 TGAATTTGTTGGGTGGTGGTG 59.241 47.619 0.00 0.00 0.00 4.17
3068 4160 2.035632 GAATTTGTTGGGTGGTGGTGA 58.964 47.619 0.00 0.00 0.00 4.02
3069 4161 2.166907 ATTTGTTGGGTGGTGGTGAA 57.833 45.000 0.00 0.00 0.00 3.18
3070 4162 1.187087 TTTGTTGGGTGGTGGTGAAC 58.813 50.000 0.00 0.00 0.00 3.18
3078 4177 0.036306 GTGGTGGTGAACTGGTAGGG 59.964 60.000 0.00 0.00 0.00 3.53
3079 4178 0.400815 TGGTGGTGAACTGGTAGGGT 60.401 55.000 0.00 0.00 0.00 4.34
3105 4204 4.284178 ACTTAATTCCATGCCATGCTTCT 58.716 39.130 0.00 0.00 0.00 2.85
3113 4214 2.924757 TGCCATGCTTCTATCTCTGG 57.075 50.000 0.00 0.00 0.00 3.86
3119 4220 3.006112 TGCTTCTATCTCTGGTCGACT 57.994 47.619 16.46 0.00 0.00 4.18
3120 4221 2.685388 TGCTTCTATCTCTGGTCGACTG 59.315 50.000 16.46 9.04 0.00 3.51
3128 4229 2.231478 TCTCTGGTCGACTGGATTTGTC 59.769 50.000 16.46 0.00 0.00 3.18
3138 4239 5.642063 TCGACTGGATTTGTCCAAGATTTAC 59.358 40.000 0.00 0.00 39.61 2.01
3163 4264 2.553602 TGCTGATTGGCAGTTAGTGTTG 59.446 45.455 3.81 0.00 46.62 3.33
3168 4269 0.537143 TGGCAGTTAGTGTTGGCAGG 60.537 55.000 0.00 0.00 43.78 4.85
3177 4278 2.456577 AGTGTTGGCAGGTTTCTTTGT 58.543 42.857 0.00 0.00 0.00 2.83
3179 4280 3.260632 AGTGTTGGCAGGTTTCTTTGTTT 59.739 39.130 0.00 0.00 0.00 2.83
3181 4282 2.857748 GTTGGCAGGTTTCTTTGTTTCG 59.142 45.455 0.00 0.00 0.00 3.46
3182 4283 2.370349 TGGCAGGTTTCTTTGTTTCGA 58.630 42.857 0.00 0.00 0.00 3.71
3184 4285 2.357952 GGCAGGTTTCTTTGTTTCGACT 59.642 45.455 0.00 0.00 0.00 4.18
3186 4287 3.064820 GCAGGTTTCTTTGTTTCGACTGA 59.935 43.478 0.00 0.00 0.00 3.41
3190 4291 4.497507 GGTTTCTTTGTTTCGACTGAAGGG 60.498 45.833 0.00 0.00 35.06 3.95
3191 4292 2.218603 TCTTTGTTTCGACTGAAGGGC 58.781 47.619 0.00 0.00 35.06 5.19
3192 4293 1.266989 CTTTGTTTCGACTGAAGGGCC 59.733 52.381 0.00 0.00 35.06 5.80
3193 4294 0.472471 TTGTTTCGACTGAAGGGCCT 59.528 50.000 0.00 0.00 35.06 5.19
3194 4295 0.472471 TGTTTCGACTGAAGGGCCTT 59.528 50.000 21.09 21.09 35.06 4.35
3195 4296 1.133915 TGTTTCGACTGAAGGGCCTTT 60.134 47.619 21.92 4.04 35.06 3.11
3196 4297 1.954382 GTTTCGACTGAAGGGCCTTTT 59.046 47.619 21.92 8.02 35.06 2.27
3197 4298 2.358322 TTCGACTGAAGGGCCTTTTT 57.642 45.000 21.92 7.62 0.00 1.94
3198 4299 1.892209 TCGACTGAAGGGCCTTTTTC 58.108 50.000 21.92 15.27 0.00 2.29
3199 4300 1.142060 TCGACTGAAGGGCCTTTTTCA 59.858 47.619 21.92 13.31 32.75 2.69
3200 4301 2.162681 CGACTGAAGGGCCTTTTTCAT 58.837 47.619 21.92 4.68 33.25 2.57
3201 4302 2.095059 CGACTGAAGGGCCTTTTTCATG 60.095 50.000 21.92 10.26 33.25 3.07
3202 4303 2.893489 GACTGAAGGGCCTTTTTCATGT 59.107 45.455 21.92 13.16 33.25 3.21
3203 4304 3.308401 ACTGAAGGGCCTTTTTCATGTT 58.692 40.909 21.92 0.00 33.25 2.71
3204 4305 3.321968 ACTGAAGGGCCTTTTTCATGTTC 59.678 43.478 21.92 4.56 33.25 3.18
3205 4306 3.575687 CTGAAGGGCCTTTTTCATGTTCT 59.424 43.478 21.92 0.00 33.25 3.01
3206 4307 3.573967 TGAAGGGCCTTTTTCATGTTCTC 59.426 43.478 21.92 3.17 0.00 2.87
3207 4308 3.243359 AGGGCCTTTTTCATGTTCTCA 57.757 42.857 0.00 0.00 0.00 3.27
3208 4309 3.782992 AGGGCCTTTTTCATGTTCTCAT 58.217 40.909 0.00 0.00 34.21 2.90
3209 4310 3.766051 AGGGCCTTTTTCATGTTCTCATC 59.234 43.478 0.00 0.00 31.15 2.92
3210 4311 3.766051 GGGCCTTTTTCATGTTCTCATCT 59.234 43.478 0.84 0.00 31.15 2.90
3211 4312 4.221482 GGGCCTTTTTCATGTTCTCATCTT 59.779 41.667 0.84 0.00 31.15 2.40
3212 4313 5.405797 GGCCTTTTTCATGTTCTCATCTTC 58.594 41.667 0.00 0.00 31.15 2.87
3213 4314 5.405797 GCCTTTTTCATGTTCTCATCTTCC 58.594 41.667 0.00 0.00 31.15 3.46
3214 4315 5.047802 GCCTTTTTCATGTTCTCATCTTCCA 60.048 40.000 0.00 0.00 31.15 3.53
3215 4316 6.385033 CCTTTTTCATGTTCTCATCTTCCAC 58.615 40.000 0.00 0.00 31.15 4.02
3216 4317 6.208204 CCTTTTTCATGTTCTCATCTTCCACT 59.792 38.462 0.00 0.00 31.15 4.00
3217 4318 6.564709 TTTTCATGTTCTCATCTTCCACTG 57.435 37.500 0.00 0.00 31.15 3.66
3218 4319 5.488262 TTCATGTTCTCATCTTCCACTGA 57.512 39.130 0.00 0.00 31.15 3.41
3219 4320 5.082251 TCATGTTCTCATCTTCCACTGAG 57.918 43.478 0.00 0.00 40.20 3.35
3220 4321 4.774200 TCATGTTCTCATCTTCCACTGAGA 59.226 41.667 0.00 0.00 44.59 3.27
3221 4322 5.424573 TCATGTTCTCATCTTCCACTGAGAT 59.575 40.000 3.33 0.00 45.34 2.75
3222 4323 6.608808 TCATGTTCTCATCTTCCACTGAGATA 59.391 38.462 3.33 0.00 45.34 1.98
3223 4324 6.857437 TGTTCTCATCTTCCACTGAGATAA 57.143 37.500 3.33 0.00 45.34 1.75
3224 4325 6.871844 TGTTCTCATCTTCCACTGAGATAAG 58.128 40.000 3.33 0.00 45.34 1.73
3225 4326 6.438741 TGTTCTCATCTTCCACTGAGATAAGT 59.561 38.462 3.33 0.00 45.34 2.24
3226 4327 7.615757 TGTTCTCATCTTCCACTGAGATAAGTA 59.384 37.037 3.33 0.00 45.34 2.24
3227 4328 8.637986 GTTCTCATCTTCCACTGAGATAAGTAT 58.362 37.037 3.33 0.00 45.34 2.12
3228 4329 8.774546 TCTCATCTTCCACTGAGATAAGTATT 57.225 34.615 0.00 0.00 42.17 1.89
3229 4330 9.206690 TCTCATCTTCCACTGAGATAAGTATTT 57.793 33.333 0.00 0.00 42.17 1.40
3265 4366 3.969287 TGTTCTCATCTTCCACTGAGG 57.031 47.619 0.00 0.00 39.48 3.86
3269 4370 5.306937 TGTTCTCATCTTCCACTGAGGTAAA 59.693 40.000 0.00 0.00 39.48 2.01
3272 4373 7.921041 TCTCATCTTCCACTGAGGTAAATAT 57.079 36.000 0.00 0.00 39.48 1.28
3300 4401 7.610580 TTTTATCATTCTGGGGAACTTTTGT 57.389 32.000 0.00 0.00 33.96 2.83
3301 4402 8.713708 TTTTATCATTCTGGGGAACTTTTGTA 57.286 30.769 0.00 0.00 33.96 2.41
3302 4403 8.713708 TTTATCATTCTGGGGAACTTTTGTAA 57.286 30.769 0.00 0.00 33.96 2.41
3303 4404 8.713708 TTATCATTCTGGGGAACTTTTGTAAA 57.286 30.769 0.00 0.00 33.96 2.01
3304 4405 7.797121 ATCATTCTGGGGAACTTTTGTAAAT 57.203 32.000 0.00 0.00 33.96 1.40
3305 4406 8.893563 ATCATTCTGGGGAACTTTTGTAAATA 57.106 30.769 0.00 0.00 33.96 1.40
3306 4407 8.713708 TCATTCTGGGGAACTTTTGTAAATAA 57.286 30.769 0.00 0.00 33.96 1.40
3307 4408 9.148879 TCATTCTGGGGAACTTTTGTAAATAAA 57.851 29.630 0.00 0.00 33.96 1.40
3308 4409 9.423061 CATTCTGGGGAACTTTTGTAAATAAAG 57.577 33.333 0.00 0.00 38.32 1.85
3309 4410 8.541899 TTCTGGGGAACTTTTGTAAATAAAGT 57.458 30.769 0.00 0.00 45.18 2.66
3310 4411 9.643735 TTCTGGGGAACTTTTGTAAATAAAGTA 57.356 29.630 0.00 0.00 43.14 2.24
3311 4412 9.292195 TCTGGGGAACTTTTGTAAATAAAGTAG 57.708 33.333 0.00 0.00 43.14 2.57
3312 4413 7.888424 TGGGGAACTTTTGTAAATAAAGTAGC 58.112 34.615 0.00 0.00 43.14 3.58
3313 4414 7.506261 TGGGGAACTTTTGTAAATAAAGTAGCA 59.494 33.333 0.00 0.00 43.14 3.49
3314 4415 8.528643 GGGGAACTTTTGTAAATAAAGTAGCAT 58.471 33.333 0.00 0.00 43.14 3.79
3315 4416 9.353999 GGGAACTTTTGTAAATAAAGTAGCATG 57.646 33.333 0.00 0.00 43.14 4.06
3335 4436 7.334574 GCATGATTATTGCTTTCTTGCTATG 57.665 36.000 0.00 0.00 37.49 2.23
3336 4437 6.128902 GCATGATTATTGCTTTCTTGCTATGC 60.129 38.462 0.00 0.00 37.49 3.14
3337 4438 5.513376 TGATTATTGCTTTCTTGCTATGCG 58.487 37.500 0.00 0.00 31.56 4.73
3338 4439 4.963276 TTATTGCTTTCTTGCTATGCGT 57.037 36.364 0.00 0.00 31.56 5.24
3339 4440 2.900122 TTGCTTTCTTGCTATGCGTC 57.100 45.000 0.00 0.00 0.00 5.19
3340 4441 0.721154 TGCTTTCTTGCTATGCGTCG 59.279 50.000 0.00 0.00 0.00 5.12
3341 4442 0.721718 GCTTTCTTGCTATGCGTCGT 59.278 50.000 0.00 0.00 0.00 4.34
3342 4443 1.267087 GCTTTCTTGCTATGCGTCGTC 60.267 52.381 0.00 0.00 0.00 4.20
3343 4444 2.263077 CTTTCTTGCTATGCGTCGTCT 58.737 47.619 0.00 0.00 0.00 4.18
3344 4445 1.629013 TTCTTGCTATGCGTCGTCTG 58.371 50.000 0.00 0.00 0.00 3.51
3345 4446 0.526211 TCTTGCTATGCGTCGTCTGT 59.474 50.000 0.00 0.00 0.00 3.41
3346 4447 1.067846 TCTTGCTATGCGTCGTCTGTT 60.068 47.619 0.00 0.00 0.00 3.16
3347 4448 1.726791 CTTGCTATGCGTCGTCTGTTT 59.273 47.619 0.00 0.00 0.00 2.83
3348 4449 1.790755 TGCTATGCGTCGTCTGTTTT 58.209 45.000 0.00 0.00 0.00 2.43
3349 4450 1.724623 TGCTATGCGTCGTCTGTTTTC 59.275 47.619 0.00 0.00 0.00 2.29
3350 4451 1.993370 GCTATGCGTCGTCTGTTTTCT 59.007 47.619 0.00 0.00 0.00 2.52
3351 4452 2.028165 GCTATGCGTCGTCTGTTTTCTC 59.972 50.000 0.00 0.00 0.00 2.87
3352 4453 2.440539 ATGCGTCGTCTGTTTTCTCT 57.559 45.000 0.00 0.00 0.00 3.10
3353 4454 1.487482 TGCGTCGTCTGTTTTCTCTG 58.513 50.000 0.00 0.00 0.00 3.35
3354 4455 1.066454 TGCGTCGTCTGTTTTCTCTGA 59.934 47.619 0.00 0.00 0.00 3.27
3355 4456 2.124903 GCGTCGTCTGTTTTCTCTGAA 58.875 47.619 0.00 0.00 0.00 3.02
3356 4457 2.097347 GCGTCGTCTGTTTTCTCTGAAC 60.097 50.000 0.00 0.00 0.00 3.18
3357 4458 2.471743 CGTCGTCTGTTTTCTCTGAACC 59.528 50.000 0.00 0.00 0.00 3.62
3358 4459 2.471743 GTCGTCTGTTTTCTCTGAACCG 59.528 50.000 0.00 0.00 0.00 4.44
3359 4460 2.359848 TCGTCTGTTTTCTCTGAACCGA 59.640 45.455 0.00 0.00 0.00 4.69
3360 4461 2.726760 CGTCTGTTTTCTCTGAACCGAG 59.273 50.000 0.00 0.00 0.00 4.63
3361 4462 3.550233 CGTCTGTTTTCTCTGAACCGAGA 60.550 47.826 0.00 0.00 38.23 4.04
3362 4463 3.736759 GTCTGTTTTCTCTGAACCGAGAC 59.263 47.826 0.00 0.00 39.62 3.36
3363 4464 3.383505 TCTGTTTTCTCTGAACCGAGACA 59.616 43.478 0.00 0.00 39.62 3.41
3364 4465 4.039245 TCTGTTTTCTCTGAACCGAGACAT 59.961 41.667 0.00 0.00 39.62 3.06
3365 4466 4.058124 TGTTTTCTCTGAACCGAGACATG 58.942 43.478 0.00 0.00 39.62 3.21
3366 4467 4.058817 GTTTTCTCTGAACCGAGACATGT 58.941 43.478 0.00 0.00 39.62 3.21
3367 4468 4.336889 TTTCTCTGAACCGAGACATGTT 57.663 40.909 0.00 0.00 39.62 2.71
3368 4469 4.336889 TTCTCTGAACCGAGACATGTTT 57.663 40.909 0.00 0.00 39.62 2.83
3369 4470 3.653344 TCTCTGAACCGAGACATGTTTG 58.347 45.455 0.00 0.00 35.23 2.93
3370 4471 3.320826 TCTCTGAACCGAGACATGTTTGA 59.679 43.478 0.00 0.00 35.23 2.69
3371 4472 3.653344 TCTGAACCGAGACATGTTTGAG 58.347 45.455 0.00 0.00 0.00 3.02
3372 4473 3.069586 TCTGAACCGAGACATGTTTGAGT 59.930 43.478 0.00 0.00 0.00 3.41
3373 4474 3.804036 TGAACCGAGACATGTTTGAGTT 58.196 40.909 0.00 2.30 0.00 3.01
3374 4475 3.559655 TGAACCGAGACATGTTTGAGTTG 59.440 43.478 0.00 0.00 0.00 3.16
3375 4476 3.469008 ACCGAGACATGTTTGAGTTGA 57.531 42.857 0.00 0.00 0.00 3.18
3376 4477 3.131396 ACCGAGACATGTTTGAGTTGAC 58.869 45.455 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.622948 TCCCTTTCTCTTTCTTTCTTCATTAC 57.377 34.615 0.00 0.00 0.00 1.89
5 6 7.084268 TCTCCCTTTCTCTTTCTTTCTTCAT 57.916 36.000 0.00 0.00 0.00 2.57
6 7 6.500589 TCTCCCTTTCTCTTTCTTTCTTCA 57.499 37.500 0.00 0.00 0.00 3.02
7 8 7.809546 TTTCTCCCTTTCTCTTTCTTTCTTC 57.190 36.000 0.00 0.00 0.00 2.87
58 60 9.508567 AAGTAACCGTCGACTTATTTACTTATC 57.491 33.333 24.25 4.53 37.77 1.75
63 65 5.863935 ACCAAGTAACCGTCGACTTATTTAC 59.136 40.000 14.70 13.85 34.13 2.01
73 75 0.032403 TGGTGACCAAGTAACCGTCG 59.968 55.000 0.00 0.00 39.89 5.12
98 100 3.482783 GCGTGGCTCTGCTTCGAC 61.483 66.667 9.76 0.00 0.00 4.20
124 126 4.838486 GAGCGCGGAGGAGTCGTG 62.838 72.222 8.83 0.00 40.58 4.35
203 211 1.133482 GGAGAAGAGAGGAGGAGGAGG 60.133 61.905 0.00 0.00 0.00 4.30
204 212 1.133482 GGGAGAAGAGAGGAGGAGGAG 60.133 61.905 0.00 0.00 0.00 3.69
205 213 0.930726 GGGAGAAGAGAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
337 357 4.722700 CGTGGGCCTTGAGGTGGG 62.723 72.222 4.53 0.00 37.57 4.61
370 390 3.151022 CGGTGGAGAGGGAGAGGC 61.151 72.222 0.00 0.00 0.00 4.70
480 907 1.388547 GGGCTCAAATTCATGCCGTA 58.611 50.000 8.71 0.00 45.75 4.02
482 909 1.064621 CGGGCTCAAATTCATGCCG 59.935 57.895 8.71 0.00 45.75 5.69
497 924 2.101582 TCATTCCAACAACCAAAACGGG 59.898 45.455 0.00 0.00 40.22 5.28
512 939 2.029728 CACGCAAGAGATTCGTCATTCC 59.970 50.000 0.00 0.00 43.62 3.01
520 947 6.170675 ACAAGATTAACACGCAAGAGATTC 57.829 37.500 0.00 0.00 43.62 2.52
542 969 6.037500 ACGGTTAGTTCCTTTAACTTGACAAC 59.962 38.462 0.00 0.00 46.61 3.32
547 974 4.319984 GCCACGGTTAGTTCCTTTAACTTG 60.320 45.833 0.00 0.00 46.61 3.16
551 978 2.781923 GGCCACGGTTAGTTCCTTTAA 58.218 47.619 0.00 0.00 0.00 1.52
552 979 1.338011 CGGCCACGGTTAGTTCCTTTA 60.338 52.381 2.24 0.00 36.18 1.85
557 984 1.004595 GAATCGGCCACGGTTAGTTC 58.995 55.000 2.24 0.00 44.80 3.01
560 987 0.529992 GAGGAATCGGCCACGGTTAG 60.530 60.000 2.24 0.00 44.80 2.34
577 1004 2.618053 AGAAAACATCGCCCTAACGAG 58.382 47.619 0.00 0.00 46.69 4.18
586 1013 3.492313 CCTAACTGCAAGAAAACATCGC 58.508 45.455 0.00 0.00 37.43 4.58
588 1015 4.079253 TCCCCTAACTGCAAGAAAACATC 58.921 43.478 0.00 0.00 37.43 3.06
590 1017 3.586470 TCCCCTAACTGCAAGAAAACA 57.414 42.857 0.00 0.00 37.43 2.83
591 1018 4.379499 CGAATCCCCTAACTGCAAGAAAAC 60.379 45.833 0.00 0.00 37.43 2.43
607 1034 0.811281 CAAGGAAACAGCCGAATCCC 59.189 55.000 0.00 0.00 32.15 3.85
620 1047 4.081972 CACAGCTAGCTAAGAGTCAAGGAA 60.082 45.833 18.86 0.00 0.00 3.36
626 1053 4.803088 CACATTCACAGCTAGCTAAGAGTC 59.197 45.833 18.86 0.00 0.00 3.36
662 1093 0.322008 GAGGAACCAAGCAGGAGTGG 60.322 60.000 1.83 0.00 41.22 4.00
668 1099 1.460255 TTGGGGAGGAACCAAGCAG 59.540 57.895 0.00 0.00 42.75 4.24
669 1100 3.681129 TTGGGGAGGAACCAAGCA 58.319 55.556 0.00 0.00 42.75 3.91
678 1128 1.723128 CCATGGGGATCTTGGGGAGG 61.723 65.000 2.85 0.00 37.12 4.30
681 1131 0.995675 AGACCATGGGGATCTTGGGG 60.996 60.000 18.09 0.00 42.97 4.96
692 1142 0.390492 TAGCATGCGAGAGACCATGG 59.610 55.000 11.19 11.19 39.30 3.66
704 1154 2.939103 AGTTTCGACCATCTTAGCATGC 59.061 45.455 10.51 10.51 0.00 4.06
719 1169 5.864474 ACTACTTGAGCAGATGTAAGTTTCG 59.136 40.000 0.00 0.00 35.26 3.46
727 1177 8.854614 AGAATTTTTACTACTTGAGCAGATGT 57.145 30.769 0.00 0.00 0.00 3.06
733 1183 8.666573 GGGAACTAGAATTTTTACTACTTGAGC 58.333 37.037 0.00 0.00 0.00 4.26
734 1184 9.945904 AGGGAACTAGAATTTTTACTACTTGAG 57.054 33.333 0.00 0.00 40.61 3.02
796 1287 9.739276 TTGTAAATTTGTACTCCATCTCTGAAT 57.261 29.630 0.00 0.00 0.00 2.57
811 1302 6.151144 GCTCCATGTCTACCTTGTAAATTTGT 59.849 38.462 0.00 0.00 0.00 2.83
814 1305 5.882557 CAGCTCCATGTCTACCTTGTAAATT 59.117 40.000 0.00 0.00 0.00 1.82
825 1316 4.281941 CACTTATAGGCAGCTCCATGTCTA 59.718 45.833 5.21 0.00 41.38 2.59
828 1319 3.041211 TCACTTATAGGCAGCTCCATGT 58.959 45.455 5.21 0.00 37.29 3.21
829 1320 3.758755 TCACTTATAGGCAGCTCCATG 57.241 47.619 5.21 0.00 37.29 3.66
831 1322 2.837591 TGTTCACTTATAGGCAGCTCCA 59.162 45.455 5.21 0.00 37.29 3.86
833 1324 3.198872 GGTGTTCACTTATAGGCAGCTC 58.801 50.000 2.98 0.00 0.00 4.09
865 1356 4.935808 ACGGAAATACAATGTCTCAGGAAC 59.064 41.667 0.00 0.00 0.00 3.62
867 1358 4.819105 ACGGAAATACAATGTCTCAGGA 57.181 40.909 0.00 0.00 0.00 3.86
868 1359 6.761242 TCATAACGGAAATACAATGTCTCAGG 59.239 38.462 0.00 0.00 0.00 3.86
871 1362 8.665685 ACTTTCATAACGGAAATACAATGTCTC 58.334 33.333 0.00 0.00 36.29 3.36
872 1363 8.561738 ACTTTCATAACGGAAATACAATGTCT 57.438 30.769 0.00 0.00 36.29 3.41
877 1368 9.451002 TCCATTACTTTCATAACGGAAATACAA 57.549 29.630 0.00 0.00 36.29 2.41
878 1369 9.451002 TTCCATTACTTTCATAACGGAAATACA 57.549 29.630 0.00 0.00 34.37 2.29
881 1372 8.466798 CCTTTCCATTACTTTCATAACGGAAAT 58.533 33.333 6.33 0.00 42.44 2.17
882 1373 7.094118 CCCTTTCCATTACTTTCATAACGGAAA 60.094 37.037 5.87 5.87 41.63 3.13
883 1374 6.376018 CCCTTTCCATTACTTTCATAACGGAA 59.624 38.462 0.00 0.00 35.23 4.30
884 1375 5.883673 CCCTTTCCATTACTTTCATAACGGA 59.116 40.000 0.00 0.00 0.00 4.69
885 1376 5.449999 GCCCTTTCCATTACTTTCATAACGG 60.450 44.000 0.00 0.00 0.00 4.44
886 1377 5.124776 TGCCCTTTCCATTACTTTCATAACG 59.875 40.000 0.00 0.00 0.00 3.18
887 1378 6.524101 TGCCCTTTCCATTACTTTCATAAC 57.476 37.500 0.00 0.00 0.00 1.89
888 1379 7.546250 TTTGCCCTTTCCATTACTTTCATAA 57.454 32.000 0.00 0.00 0.00 1.90
889 1380 7.546250 TTTTGCCCTTTCCATTACTTTCATA 57.454 32.000 0.00 0.00 0.00 2.15
890 1381 6.432403 TTTTGCCCTTTCCATTACTTTCAT 57.568 33.333 0.00 0.00 0.00 2.57
891 1382 5.741673 GCTTTTGCCCTTTCCATTACTTTCA 60.742 40.000 0.00 0.00 40.15 2.69
892 1383 4.690748 GCTTTTGCCCTTTCCATTACTTTC 59.309 41.667 0.00 0.00 40.15 2.62
893 1384 4.641396 GCTTTTGCCCTTTCCATTACTTT 58.359 39.130 0.00 0.00 40.15 2.66
894 1385 4.271696 GCTTTTGCCCTTTCCATTACTT 57.728 40.909 0.00 0.00 40.15 2.24
895 1386 3.961480 GCTTTTGCCCTTTCCATTACT 57.039 42.857 0.00 0.00 40.15 2.24
908 1399 0.249114 TTTTCGAACCGGGCTTTTGC 60.249 50.000 6.32 0.00 46.64 3.68
909 1400 2.211353 TTTTTCGAACCGGGCTTTTG 57.789 45.000 6.32 0.00 0.00 2.44
929 1420 6.959639 ATATCAGTGTGGTGTTCACTTTTT 57.040 33.333 2.98 0.00 46.20 1.94
930 1421 6.959639 AATATCAGTGTGGTGTTCACTTTT 57.040 33.333 2.98 0.00 46.20 2.27
931 1422 6.239008 CCAAATATCAGTGTGGTGTTCACTTT 60.239 38.462 2.98 0.00 46.20 2.66
932 1423 5.241506 CCAAATATCAGTGTGGTGTTCACTT 59.758 40.000 2.98 0.00 46.20 3.16
933 1424 4.761739 CCAAATATCAGTGTGGTGTTCACT 59.238 41.667 2.98 0.00 46.20 3.41
934 1425 4.615912 GCCAAATATCAGTGTGGTGTTCAC 60.616 45.833 0.00 0.00 46.23 3.18
935 1426 3.505680 GCCAAATATCAGTGTGGTGTTCA 59.494 43.478 0.00 0.00 33.43 3.18
936 1427 3.758554 AGCCAAATATCAGTGTGGTGTTC 59.241 43.478 0.00 0.00 33.43 3.18
937 1428 3.766545 AGCCAAATATCAGTGTGGTGTT 58.233 40.909 0.00 0.00 33.43 3.32
938 1429 3.439857 AGCCAAATATCAGTGTGGTGT 57.560 42.857 0.00 0.00 33.43 4.16
939 1430 4.789012 AAAGCCAAATATCAGTGTGGTG 57.211 40.909 0.00 0.00 33.43 4.17
940 1431 5.079643 AGAAAAGCCAAATATCAGTGTGGT 58.920 37.500 0.00 0.00 33.43 4.16
941 1432 5.649782 AGAAAAGCCAAATATCAGTGTGG 57.350 39.130 0.00 0.00 0.00 4.17
942 1433 7.095523 CCAAAAGAAAAGCCAAATATCAGTGTG 60.096 37.037 0.00 0.00 0.00 3.82
943 1434 6.930722 CCAAAAGAAAAGCCAAATATCAGTGT 59.069 34.615 0.00 0.00 0.00 3.55
944 1435 6.369615 CCCAAAAGAAAAGCCAAATATCAGTG 59.630 38.462 0.00 0.00 0.00 3.66
945 1436 6.466812 CCCAAAAGAAAAGCCAAATATCAGT 58.533 36.000 0.00 0.00 0.00 3.41
946 1437 5.352293 GCCCAAAAGAAAAGCCAAATATCAG 59.648 40.000 0.00 0.00 0.00 2.90
947 1438 5.244755 GCCCAAAAGAAAAGCCAAATATCA 58.755 37.500 0.00 0.00 0.00 2.15
948 1439 4.635765 GGCCCAAAAGAAAAGCCAAATATC 59.364 41.667 0.00 0.00 43.32 1.63
949 1440 4.289410 AGGCCCAAAAGAAAAGCCAAATAT 59.711 37.500 0.00 0.00 46.35 1.28
950 1441 3.650461 AGGCCCAAAAGAAAAGCCAAATA 59.350 39.130 0.00 0.00 46.35 1.40
951 1442 2.442878 AGGCCCAAAAGAAAAGCCAAAT 59.557 40.909 0.00 0.00 46.35 2.32
952 1443 1.843206 AGGCCCAAAAGAAAAGCCAAA 59.157 42.857 0.00 0.00 46.35 3.28
953 1444 1.506025 AGGCCCAAAAGAAAAGCCAA 58.494 45.000 0.00 0.00 46.35 4.52
954 1445 1.506025 AAGGCCCAAAAGAAAAGCCA 58.494 45.000 0.00 0.00 46.35 4.75
955 1446 2.638480 AAAGGCCCAAAAGAAAAGCC 57.362 45.000 0.00 0.00 44.20 4.35
956 1447 3.694072 ACAAAAAGGCCCAAAAGAAAAGC 59.306 39.130 0.00 0.00 0.00 3.51
957 1448 6.345298 TCTACAAAAAGGCCCAAAAGAAAAG 58.655 36.000 0.00 0.00 0.00 2.27
981 1472 4.463891 CCCATTGCTTCCAACTTCTTGTAT 59.536 41.667 0.00 0.00 32.95 2.29
997 1488 2.514824 GAGAGACGCCCCCATTGC 60.515 66.667 0.00 0.00 0.00 3.56
1025 1525 0.744281 CAAGGTTTGCTTCCCGTTGT 59.256 50.000 0.00 0.00 0.00 3.32
1041 1541 2.747855 GCTTCCCCGTGCTCCAAG 60.748 66.667 0.00 0.00 0.00 3.61
1051 1551 4.388499 TGGCTTCGACGCTTCCCC 62.388 66.667 14.02 0.00 0.00 4.81
1065 1565 1.021920 GCTTCTTCGAGGAACCTGGC 61.022 60.000 5.78 4.75 0.00 4.85
1131 1631 1.415659 AGGATTTGCAGGGAGATCTCG 59.584 52.381 16.46 4.27 0.00 4.04
1171 1671 3.062763 CCATCTTGCTGCTAAGATACCG 58.937 50.000 19.56 11.90 43.62 4.02
1190 1690 0.250295 CTTCCAGCTCCGTGAAACCA 60.250 55.000 0.00 0.00 0.00 3.67
1221 1721 2.283529 CCGGTACAGCTCCACACCT 61.284 63.158 0.00 0.00 0.00 4.00
1224 1724 2.203728 ACCCGGTACAGCTCCACA 60.204 61.111 0.00 0.00 0.00 4.17
1225 1725 2.227089 CTCACCCGGTACAGCTCCAC 62.227 65.000 0.00 0.00 0.00 4.02
1231 1731 0.613853 TCCTTCCTCACCCGGTACAG 60.614 60.000 0.00 0.00 0.00 2.74
1236 1736 2.294078 AAGCTCCTTCCTCACCCGG 61.294 63.158 0.00 0.00 0.00 5.73
1257 1757 4.450976 TGTAAATCCATTCCTCATCCACG 58.549 43.478 0.00 0.00 0.00 4.94
1297 1797 3.044059 GCCACGACAGCTTGCCATC 62.044 63.158 0.00 0.00 0.00 3.51
1317 1817 0.672889 TGCAAAGCGGATCAAAAGCA 59.327 45.000 0.00 0.00 0.00 3.91
1395 1895 3.726517 CCAGCGCTCACCAAACCG 61.727 66.667 7.13 0.00 0.00 4.44
1407 1907 1.274728 CCAGAGATCCTAATCCCAGCG 59.725 57.143 0.00 0.00 31.78 5.18
1447 1947 1.750399 CCAACCAATCCTCCTGGCG 60.750 63.158 0.00 0.00 37.48 5.69
1452 1952 2.879103 TCTTGTCCAACCAATCCTCC 57.121 50.000 0.00 0.00 0.00 4.30
1464 1964 2.893489 AGCACAAAAGGGAATCTTGTCC 59.107 45.455 0.00 0.00 35.55 4.02
1501 2001 4.630644 AAACATAGAGGCATCCATCGAT 57.369 40.909 0.00 0.00 0.00 3.59
1522 2022 2.528127 TCTGGAGAACCCGCCCAA 60.528 61.111 0.00 0.00 37.93 4.12
1536 2036 1.129998 CTTTTGATCGCTGTGGCTCTG 59.870 52.381 0.00 0.00 36.09 3.35
1548 2048 6.801539 TCATACTTCCACACACTTTTGATC 57.198 37.500 0.00 0.00 0.00 2.92
1557 2057 2.840038 AGCTGGATCATACTTCCACACA 59.160 45.455 0.00 0.00 38.35 3.72
1617 2117 2.665185 GTCCTGCCAAACGCTCGT 60.665 61.111 0.00 0.00 38.78 4.18
1665 2165 0.810031 CTTCCCTAATGACACCGCCG 60.810 60.000 0.00 0.00 0.00 6.46
1677 2177 2.919602 AGCCAATCCAGTTTCTTCCCTA 59.080 45.455 0.00 0.00 0.00 3.53
1728 2228 2.440980 GCCCAGATTCCTGTGGCC 60.441 66.667 0.00 0.00 44.22 5.36
1770 2270 0.662619 TCGGCAGAGTTTGTGCTTTG 59.337 50.000 0.00 0.00 40.97 2.77
1839 2339 2.095059 CACATACAGCTTGCCTCCAAAC 60.095 50.000 0.00 0.00 0.00 2.93
1870 2370 2.817258 CAAAGAACGGCCAGGAATACAA 59.183 45.455 2.24 0.00 0.00 2.41
1872 2372 2.433436 ACAAAGAACGGCCAGGAATAC 58.567 47.619 2.24 0.00 0.00 1.89
1884 2384 3.492482 CCCCACCAACATCAACAAAGAAC 60.492 47.826 0.00 0.00 0.00 3.01
1902 2402 1.847798 CGGGATCAAACACCTCCCCA 61.848 60.000 0.00 0.00 44.99 4.96
1920 2420 2.579787 GACCATGAGTCCGTCGCG 60.580 66.667 0.00 0.00 39.84 5.87
1983 2483 4.649218 ACAACAGCACTTAATTTTGTCCCT 59.351 37.500 0.00 0.00 0.00 4.20
2008 2508 2.915604 CCAGAGCATATAGGTCCCCATT 59.084 50.000 0.00 0.00 45.87 3.16
2026 2526 0.951040 GAACAAGTCGGTGGCTCCAG 60.951 60.000 6.39 0.00 35.57 3.86
2034 2534 1.276421 CCTCCATCAGAACAAGTCGGT 59.724 52.381 0.00 0.00 0.00 4.69
2037 2537 2.479566 TGCCTCCATCAGAACAAGTC 57.520 50.000 0.00 0.00 0.00 3.01
2050 2550 4.945246 TCATACGTCTTTATCTTGCCTCC 58.055 43.478 0.00 0.00 0.00 4.30
2052 2552 5.542779 GGATCATACGTCTTTATCTTGCCT 58.457 41.667 0.00 0.00 0.00 4.75
2066 2566 5.372547 TGTATCTTCCTTCGGATCATACG 57.627 43.478 0.00 0.00 33.11 3.06
2070 2570 4.223144 TCCATGTATCTTCCTTCGGATCA 58.777 43.478 0.00 0.00 0.00 2.92
2076 2576 4.133078 CAGCCTTCCATGTATCTTCCTTC 58.867 47.826 0.00 0.00 0.00 3.46
2079 2579 3.567478 ACAGCCTTCCATGTATCTTCC 57.433 47.619 0.00 0.00 0.00 3.46
2082 2582 4.012374 CAACAACAGCCTTCCATGTATCT 58.988 43.478 0.00 0.00 0.00 1.98
2130 2630 3.120304 GCAAGTACGGACATTTTGACTCC 60.120 47.826 0.00 0.00 0.00 3.85
2139 2639 2.456000 CGCAAGCAAGTACGGACAT 58.544 52.632 0.00 0.00 0.00 3.06
2194 2694 4.338400 CAGGATGCTGATCATGTTGTTCAT 59.662 41.667 8.85 0.00 35.95 2.57
2195 2695 3.692593 CAGGATGCTGATCATGTTGTTCA 59.307 43.478 8.85 0.00 35.95 3.18
2196 2696 4.288670 CAGGATGCTGATCATGTTGTTC 57.711 45.455 8.85 0.00 35.95 3.18
2271 2771 1.089920 CCAAAGGCCAAGAGACATCG 58.910 55.000 5.01 0.00 0.00 3.84
2285 2785 2.232941 ACATCATTGCCTTGCTCCAAAG 59.767 45.455 0.00 0.00 0.00 2.77
2286 2786 2.250031 ACATCATTGCCTTGCTCCAAA 58.750 42.857 0.00 0.00 0.00 3.28
2287 2787 1.927487 ACATCATTGCCTTGCTCCAA 58.073 45.000 0.00 0.00 0.00 3.53
2288 2788 1.927487 AACATCATTGCCTTGCTCCA 58.073 45.000 0.00 0.00 0.00 3.86
2300 2800 3.368248 CCCACCATTCTCCAAACATCAT 58.632 45.455 0.00 0.00 0.00 2.45
2379 2879 7.467811 GCAGAATGTATGTATGGTTTCTCCAAG 60.468 40.741 0.00 0.00 44.55 3.61
2454 2954 7.877097 GGCTTGATCAGATGTATGATAGAAAGT 59.123 37.037 0.00 0.00 40.02 2.66
2524 3024 5.237127 TGCTGGCAAGATTACATTCTAATCG 59.763 40.000 0.00 0.00 38.56 3.34
2553 3054 4.782019 TGGATTAAACACAGATTGGTGC 57.218 40.909 0.00 0.00 42.55 5.01
2680 3190 7.415229 CAGAACAGAAAAAGGTACCAAAGTAC 58.585 38.462 15.94 0.85 46.90 2.73
2683 3193 5.359860 ACCAGAACAGAAAAAGGTACCAAAG 59.640 40.000 15.94 0.00 0.00 2.77
2689 3199 6.887545 TCAAGAAACCAGAACAGAAAAAGGTA 59.112 34.615 0.00 0.00 0.00 3.08
2732 3243 5.064325 TCTCGCAATGATGATTTCAGAACTG 59.936 40.000 0.00 0.00 37.89 3.16
2751 3262 7.121974 ACAAATACATATGCATACTTCTCGC 57.878 36.000 8.99 0.00 0.00 5.03
2772 3283 5.011125 TGAACCCAACAAGTTCAGAAAACAA 59.989 36.000 2.36 0.00 46.50 2.83
2793 3304 4.065088 GTCAGATGTGCTGTTAAGGTGAA 58.935 43.478 0.00 0.00 45.14 3.18
2869 3960 7.962918 GCTTACATATTTGGAGTAAACACACAG 59.037 37.037 0.00 0.00 0.00 3.66
2912 4003 4.699637 TCTTATGCCAAGTTACATACGGG 58.300 43.478 0.00 0.00 0.00 5.28
2919 4010 6.599638 ACTTTCTCCATCTTATGCCAAGTTAC 59.400 38.462 0.00 0.00 0.00 2.50
2936 4027 3.428589 GCAATGAGCCAATGACTTTCTCC 60.429 47.826 0.00 0.00 37.23 3.71
2949 4040 2.315038 CGAAGCCGAAGCAATGAGCC 62.315 60.000 0.00 0.00 43.56 4.70
2950 4041 1.061570 CGAAGCCGAAGCAATGAGC 59.938 57.895 0.00 0.00 43.56 4.26
2951 4042 1.021390 ACCGAAGCCGAAGCAATGAG 61.021 55.000 0.00 0.00 43.56 2.90
2953 4044 1.425428 GACCGAAGCCGAAGCAATG 59.575 57.895 0.00 0.00 43.56 2.82
2954 4045 1.745489 GGACCGAAGCCGAAGCAAT 60.745 57.895 0.00 0.00 43.56 3.56
2957 4048 1.305930 ATTTGGACCGAAGCCGAAGC 61.306 55.000 0.00 0.00 38.22 3.86
2958 4049 2.018542 TATTTGGACCGAAGCCGAAG 57.981 50.000 0.00 0.00 38.22 3.79
2959 4050 2.702592 ATATTTGGACCGAAGCCGAA 57.297 45.000 0.00 0.00 38.22 4.30
2960 4051 3.322541 TGATATATTTGGACCGAAGCCGA 59.677 43.478 0.00 0.00 38.22 5.54
2961 4052 3.432252 GTGATATATTTGGACCGAAGCCG 59.568 47.826 0.00 0.00 0.00 5.52
2962 4053 3.751698 GGTGATATATTTGGACCGAAGCC 59.248 47.826 0.00 0.00 0.00 4.35
2963 4054 4.385825 TGGTGATATATTTGGACCGAAGC 58.614 43.478 0.00 0.00 0.00 3.86
2964 4055 6.230472 TCATGGTGATATATTTGGACCGAAG 58.770 40.000 0.00 0.00 0.00 3.79
2965 4056 6.181206 TCATGGTGATATATTTGGACCGAA 57.819 37.500 0.00 0.00 0.00 4.30
2966 4057 5.816955 TCATGGTGATATATTTGGACCGA 57.183 39.130 0.00 0.00 0.00 4.69
2967 4058 6.430925 ACATTCATGGTGATATATTTGGACCG 59.569 38.462 6.10 0.00 0.00 4.79
2968 4059 7.765695 ACATTCATGGTGATATATTTGGACC 57.234 36.000 6.10 0.00 0.00 4.46
2969 4060 9.507329 ACTACATTCATGGTGATATATTTGGAC 57.493 33.333 6.10 0.00 0.00 4.02
2990 4081 5.873712 TCGTCAAAACCTGTAACAAACTACA 59.126 36.000 0.00 0.00 0.00 2.74
3013 4105 4.083643 CCCAAATGTGTCGAGATATGCATC 60.084 45.833 0.19 0.00 0.00 3.91
3020 4112 3.750371 TCAAACCCAAATGTGTCGAGAT 58.250 40.909 0.00 0.00 0.00 2.75
3024 4116 3.987220 GGAATTCAAACCCAAATGTGTCG 59.013 43.478 7.93 0.00 0.00 4.35
3038 4130 5.454471 CCACCCAACAAATTCAGGAATTCAA 60.454 40.000 7.93 0.00 39.88 2.69
3059 4151 0.036306 CCCTACCAGTTCACCACCAC 59.964 60.000 0.00 0.00 0.00 4.16
3060 4152 0.400815 ACCCTACCAGTTCACCACCA 60.401 55.000 0.00 0.00 0.00 4.17
3061 4153 0.036306 CACCCTACCAGTTCACCACC 59.964 60.000 0.00 0.00 0.00 4.61
3062 4154 0.036306 CCACCCTACCAGTTCACCAC 59.964 60.000 0.00 0.00 0.00 4.16
3064 4156 1.061546 TTCCACCCTACCAGTTCACC 58.938 55.000 0.00 0.00 0.00 4.02
3065 4157 1.697982 AGTTCCACCCTACCAGTTCAC 59.302 52.381 0.00 0.00 0.00 3.18
3067 4159 4.628963 TTAAGTTCCACCCTACCAGTTC 57.371 45.455 0.00 0.00 0.00 3.01
3068 4160 5.567430 GAATTAAGTTCCACCCTACCAGTT 58.433 41.667 0.00 0.00 0.00 3.16
3069 4161 5.175388 GAATTAAGTTCCACCCTACCAGT 57.825 43.478 0.00 0.00 0.00 4.00
3095 4194 2.765122 GACCAGAGATAGAAGCATGGC 58.235 52.381 0.00 0.00 0.00 4.40
3097 4196 3.317711 AGTCGACCAGAGATAGAAGCATG 59.682 47.826 13.01 0.00 0.00 4.06
3105 4204 4.023980 ACAAATCCAGTCGACCAGAGATA 58.976 43.478 13.01 0.00 0.00 1.98
3138 4239 2.816087 ACTAACTGCCAATCAGCACAAG 59.184 45.455 0.00 0.00 46.76 3.16
3163 4264 2.357952 AGTCGAAACAAAGAAACCTGCC 59.642 45.455 0.00 0.00 0.00 4.85
3168 4269 4.598062 CCCTTCAGTCGAAACAAAGAAAC 58.402 43.478 0.00 0.00 0.00 2.78
3177 4278 2.358322 AAAAGGCCCTTCAGTCGAAA 57.642 45.000 0.00 0.00 0.00 3.46
3179 4280 1.142060 TGAAAAAGGCCCTTCAGTCGA 59.858 47.619 0.00 0.00 0.00 4.20
3181 4282 2.893489 ACATGAAAAAGGCCCTTCAGTC 59.107 45.455 15.44 0.00 35.14 3.51
3182 4283 2.962859 ACATGAAAAAGGCCCTTCAGT 58.037 42.857 15.44 11.39 35.14 3.41
3184 4285 3.573967 GAGAACATGAAAAAGGCCCTTCA 59.426 43.478 13.28 13.28 36.08 3.02
3186 4287 3.575805 TGAGAACATGAAAAAGGCCCTT 58.424 40.909 0.00 0.00 0.00 3.95
3190 4291 5.047802 TGGAAGATGAGAACATGAAAAAGGC 60.048 40.000 0.00 0.00 36.82 4.35
3191 4292 6.208204 AGTGGAAGATGAGAACATGAAAAAGG 59.792 38.462 0.00 0.00 36.82 3.11
3192 4293 7.040892 TCAGTGGAAGATGAGAACATGAAAAAG 60.041 37.037 0.00 0.00 36.82 2.27
3193 4294 6.772233 TCAGTGGAAGATGAGAACATGAAAAA 59.228 34.615 0.00 0.00 36.82 1.94
3194 4295 6.298361 TCAGTGGAAGATGAGAACATGAAAA 58.702 36.000 0.00 0.00 36.82 2.29
3195 4296 5.868454 TCAGTGGAAGATGAGAACATGAAA 58.132 37.500 0.00 0.00 36.82 2.69
3196 4297 5.246883 TCTCAGTGGAAGATGAGAACATGAA 59.753 40.000 0.00 0.00 46.74 2.57
3197 4298 4.774200 TCTCAGTGGAAGATGAGAACATGA 59.226 41.667 0.00 0.00 46.74 3.07
3198 4299 5.082251 TCTCAGTGGAAGATGAGAACATG 57.918 43.478 2.54 0.00 46.74 3.21
3230 4331 9.484806 AAGATGAGAACATGAAGGGATAAAAAT 57.515 29.630 0.00 0.00 36.82 1.82
3231 4332 8.884124 AAGATGAGAACATGAAGGGATAAAAA 57.116 30.769 0.00 0.00 36.82 1.94
3232 4333 7.557719 GGAAGATGAGAACATGAAGGGATAAAA 59.442 37.037 0.00 0.00 36.82 1.52
3233 4334 7.056635 GGAAGATGAGAACATGAAGGGATAAA 58.943 38.462 0.00 0.00 36.82 1.40
3234 4335 6.158520 TGGAAGATGAGAACATGAAGGGATAA 59.841 38.462 0.00 0.00 36.82 1.75
3235 4336 5.667172 TGGAAGATGAGAACATGAAGGGATA 59.333 40.000 0.00 0.00 36.82 2.59
3236 4337 4.476113 TGGAAGATGAGAACATGAAGGGAT 59.524 41.667 0.00 0.00 36.82 3.85
3237 4338 3.845992 TGGAAGATGAGAACATGAAGGGA 59.154 43.478 0.00 0.00 36.82 4.20
3238 4339 3.944015 GTGGAAGATGAGAACATGAAGGG 59.056 47.826 0.00 0.00 36.82 3.95
3279 4380 8.893563 ATTTACAAAAGTTCCCCAGAATGATA 57.106 30.769 0.00 0.00 39.69 2.15
3280 4381 7.797121 ATTTACAAAAGTTCCCCAGAATGAT 57.203 32.000 0.00 0.00 39.69 2.45
3281 4382 8.713708 TTATTTACAAAAGTTCCCCAGAATGA 57.286 30.769 0.00 0.00 39.69 2.57
3282 4383 9.423061 CTTTATTTACAAAAGTTCCCCAGAATG 57.577 33.333 0.00 0.00 33.67 2.67
3283 4384 9.154632 ACTTTATTTACAAAAGTTCCCCAGAAT 57.845 29.630 0.00 0.00 42.97 2.40
3284 4385 8.541899 ACTTTATTTACAAAAGTTCCCCAGAA 57.458 30.769 0.00 0.00 42.97 3.02
3285 4386 9.292195 CTACTTTATTTACAAAAGTTCCCCAGA 57.708 33.333 6.53 0.00 42.97 3.86
3286 4387 8.027189 GCTACTTTATTTACAAAAGTTCCCCAG 58.973 37.037 6.53 0.24 42.97 4.45
3287 4388 7.506261 TGCTACTTTATTTACAAAAGTTCCCCA 59.494 33.333 6.53 0.00 42.97 4.96
3288 4389 7.888424 TGCTACTTTATTTACAAAAGTTCCCC 58.112 34.615 6.53 0.00 42.97 4.81
3289 4390 9.353999 CATGCTACTTTATTTACAAAAGTTCCC 57.646 33.333 6.53 0.00 42.97 3.97
3311 4412 6.128902 GCATAGCAAGAAAGCAATAATCATGC 60.129 38.462 0.00 0.00 44.15 4.06
3312 4413 6.087687 CGCATAGCAAGAAAGCAATAATCATG 59.912 38.462 0.00 0.00 36.85 3.07
3313 4414 6.147581 CGCATAGCAAGAAAGCAATAATCAT 58.852 36.000 0.00 0.00 36.85 2.45
3314 4415 5.066375 ACGCATAGCAAGAAAGCAATAATCA 59.934 36.000 0.00 0.00 36.85 2.57
3315 4416 5.514279 ACGCATAGCAAGAAAGCAATAATC 58.486 37.500 0.00 0.00 36.85 1.75
3316 4417 5.505173 ACGCATAGCAAGAAAGCAATAAT 57.495 34.783 0.00 0.00 36.85 1.28
3317 4418 4.494035 CGACGCATAGCAAGAAAGCAATAA 60.494 41.667 0.00 0.00 36.85 1.40
3318 4419 3.001228 CGACGCATAGCAAGAAAGCAATA 59.999 43.478 0.00 0.00 36.85 1.90
3319 4420 2.223112 CGACGCATAGCAAGAAAGCAAT 60.223 45.455 0.00 0.00 36.85 3.56
3320 4421 1.128507 CGACGCATAGCAAGAAAGCAA 59.871 47.619 0.00 0.00 36.85 3.91
3321 4422 0.721154 CGACGCATAGCAAGAAAGCA 59.279 50.000 0.00 0.00 36.85 3.91
3322 4423 0.721718 ACGACGCATAGCAAGAAAGC 59.278 50.000 0.00 0.00 0.00 3.51
3323 4424 2.028523 CAGACGACGCATAGCAAGAAAG 59.971 50.000 0.00 0.00 0.00 2.62
3324 4425 1.992667 CAGACGACGCATAGCAAGAAA 59.007 47.619 0.00 0.00 0.00 2.52
3325 4426 1.067846 ACAGACGACGCATAGCAAGAA 60.068 47.619 0.00 0.00 0.00 2.52
3326 4427 0.526211 ACAGACGACGCATAGCAAGA 59.474 50.000 0.00 0.00 0.00 3.02
3327 4428 1.350193 AACAGACGACGCATAGCAAG 58.650 50.000 0.00 0.00 0.00 4.01
3328 4429 1.790755 AAACAGACGACGCATAGCAA 58.209 45.000 0.00 0.00 0.00 3.91
3329 4430 1.724623 GAAAACAGACGACGCATAGCA 59.275 47.619 0.00 0.00 0.00 3.49
3330 4431 1.993370 AGAAAACAGACGACGCATAGC 59.007 47.619 0.00 0.00 0.00 2.97
3331 4432 3.301906 CAGAGAAAACAGACGACGCATAG 59.698 47.826 0.00 0.00 0.00 2.23
3332 4433 3.057806 TCAGAGAAAACAGACGACGCATA 60.058 43.478 0.00 0.00 0.00 3.14
3333 4434 2.061773 CAGAGAAAACAGACGACGCAT 58.938 47.619 0.00 0.00 0.00 4.73
3334 4435 1.066454 TCAGAGAAAACAGACGACGCA 59.934 47.619 0.00 0.00 0.00 5.24
3335 4436 1.767289 TCAGAGAAAACAGACGACGC 58.233 50.000 0.00 0.00 0.00 5.19
3336 4437 2.471743 GGTTCAGAGAAAACAGACGACG 59.528 50.000 0.00 0.00 0.00 5.12
3337 4438 2.471743 CGGTTCAGAGAAAACAGACGAC 59.528 50.000 0.00 0.00 0.00 4.34
3338 4439 2.359848 TCGGTTCAGAGAAAACAGACGA 59.640 45.455 0.00 0.00 0.00 4.20
3339 4440 2.726760 CTCGGTTCAGAGAAAACAGACG 59.273 50.000 0.00 0.00 40.57 4.18
3340 4441 3.978687 TCTCGGTTCAGAGAAAACAGAC 58.021 45.455 0.60 0.00 43.56 3.51
3348 4449 3.320826 TCAAACATGTCTCGGTTCAGAGA 59.679 43.478 0.00 0.00 44.23 3.10
3349 4450 3.653344 TCAAACATGTCTCGGTTCAGAG 58.347 45.455 0.00 0.00 39.52 3.35
3350 4451 3.069586 ACTCAAACATGTCTCGGTTCAGA 59.930 43.478 0.00 0.00 0.00 3.27
3351 4452 3.393800 ACTCAAACATGTCTCGGTTCAG 58.606 45.455 0.00 0.00 0.00 3.02
3352 4453 3.469008 ACTCAAACATGTCTCGGTTCA 57.531 42.857 0.00 0.00 0.00 3.18
3353 4454 3.807622 TCAACTCAAACATGTCTCGGTTC 59.192 43.478 0.00 0.00 0.00 3.62
3354 4455 3.560068 GTCAACTCAAACATGTCTCGGTT 59.440 43.478 0.00 0.13 0.00 4.44
3355 4456 3.131396 GTCAACTCAAACATGTCTCGGT 58.869 45.455 0.00 0.00 0.00 4.69
3356 4457 3.795561 GTCAACTCAAACATGTCTCGG 57.204 47.619 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.