Multiple sequence alignment - TraesCS4A01G471700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G471700 chr4A 100.000 3995 0 0 1 3995 732105056 732109050 0.000000e+00 7378.0
1 TraesCS4A01G471700 chr4A 85.938 2617 348 15 387 2992 731616868 731614261 0.000000e+00 2776.0
2 TraesCS4A01G471700 chr4A 82.895 2625 419 22 388 2990 731861828 731859212 0.000000e+00 2333.0
3 TraesCS4A01G471700 chr4A 84.433 2152 304 20 23 2160 732058209 732060343 0.000000e+00 2089.0
4 TraesCS4A01G471700 chr4A 80.586 922 172 6 2996 3915 732380488 732381404 0.000000e+00 704.0
5 TraesCS4A01G471700 chr4A 79.353 959 186 10 2997 3949 731859371 731858419 0.000000e+00 664.0
6 TraesCS4A01G471700 chr4A 76.046 956 213 14 2997 3947 732357193 732358137 2.160000e-132 483.0
7 TraesCS4A01G471700 chr4A 81.918 365 56 9 2995 3355 731500949 731500591 2.330000e-77 300.0
8 TraesCS4A01G471700 chr7D 87.504 2993 340 20 23 2994 8256429 8253450 0.000000e+00 3424.0
9 TraesCS4A01G471700 chr7D 89.851 2611 252 9 393 2992 7561054 7563662 0.000000e+00 3341.0
10 TraesCS4A01G471700 chr7D 86.131 2949 385 18 23 2961 7923953 7926887 0.000000e+00 3158.0
11 TraesCS4A01G471700 chr7D 84.003 2613 399 14 387 2984 7548360 7550968 0.000000e+00 2492.0
12 TraesCS4A01G471700 chr7D 84.178 2566 376 24 445 2990 8085336 8087891 0.000000e+00 2462.0
13 TraesCS4A01G471700 chr7D 81.910 1675 254 23 122 1771 8223077 8224727 0.000000e+00 1369.0
14 TraesCS4A01G471700 chr7D 81.144 944 164 10 2995 3934 7714967 7715900 0.000000e+00 745.0
15 TraesCS4A01G471700 chr7D 80.314 955 170 16 2995 3942 8179428 8180371 0.000000e+00 706.0
16 TraesCS4A01G471700 chr7D 79.108 919 185 6 2995 3911 8033075 8033988 9.430000e-176 627.0
17 TraesCS4A01G471700 chr7D 79.908 866 162 10 2985 3846 7563748 7564605 3.390000e-175 625.0
18 TraesCS4A01G471700 chr7D 78.624 959 187 14 2995 3947 8235844 8236790 1.580000e-173 619.0
19 TraesCS4A01G471700 chr7D 79.787 658 124 7 3192 3846 8060738 8061389 1.680000e-128 470.0
20 TraesCS4A01G471700 chr7D 96.154 52 0 2 3945 3995 175862591 175862641 2.560000e-12 84.2
21 TraesCS4A01G471700 chr7D 92.857 56 3 1 3940 3995 28832457 28832511 3.310000e-11 80.5
22 TraesCS4A01G471700 chr7A 87.174 2994 344 24 23 2994 8695457 8692482 0.000000e+00 3365.0
23 TraesCS4A01G471700 chr7A 84.208 1906 284 12 263 2153 56174048 56175951 0.000000e+00 1836.0
24 TraesCS4A01G471700 chr7A 82.705 1937 269 36 33 1921 56204502 56206420 0.000000e+00 1661.0
25 TraesCS4A01G471700 chr7A 86.494 348 43 3 23 367 8589364 8589710 2.910000e-101 379.0
26 TraesCS4A01G471700 chr3B 87.082 2632 315 13 387 2994 741463141 741465771 0.000000e+00 2953.0
27 TraesCS4A01G471700 chr3B 81.165 961 162 15 2995 3947 741465606 741466555 0.000000e+00 754.0
28 TraesCS4A01G471700 chr3B 92.857 56 3 1 3940 3995 295203550 295203604 3.310000e-11 80.5
29 TraesCS4A01G471700 chr5B 83.249 1785 287 11 383 2160 37481581 37483360 0.000000e+00 1629.0
30 TraesCS4A01G471700 chr5B 87.826 115 13 1 129 242 37409999 37410113 2.500000e-27 134.0
31 TraesCS4A01G471700 chr2B 90.909 66 5 1 3931 3995 124351027 124351092 1.980000e-13 87.9
32 TraesCS4A01G471700 chr7B 100.000 45 0 0 3951 3995 655842397 655842353 2.560000e-12 84.2
33 TraesCS4A01G471700 chr5D 94.444 54 2 1 3943 3995 485422918 485422865 9.200000e-12 82.4
34 TraesCS4A01G471700 chr5A 94.340 53 3 0 3943 3995 509247538 509247590 9.200000e-12 82.4
35 TraesCS4A01G471700 chr3D 94.340 53 3 0 3943 3995 581924107 581924159 9.200000e-12 82.4
36 TraesCS4A01G471700 chr3A 89.394 66 5 2 3931 3995 701564822 701564886 9.200000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G471700 chr4A 732105056 732109050 3994 False 7378.0 7378 100.0000 1 3995 1 chr4A.!!$F2 3994
1 TraesCS4A01G471700 chr4A 731614261 731616868 2607 True 2776.0 2776 85.9380 387 2992 1 chr4A.!!$R2 2605
2 TraesCS4A01G471700 chr4A 732058209 732060343 2134 False 2089.0 2089 84.4330 23 2160 1 chr4A.!!$F1 2137
3 TraesCS4A01G471700 chr4A 731858419 731861828 3409 True 1498.5 2333 81.1240 388 3949 2 chr4A.!!$R3 3561
4 TraesCS4A01G471700 chr4A 732380488 732381404 916 False 704.0 704 80.5860 2996 3915 1 chr4A.!!$F4 919
5 TraesCS4A01G471700 chr4A 732357193 732358137 944 False 483.0 483 76.0460 2997 3947 1 chr4A.!!$F3 950
6 TraesCS4A01G471700 chr7D 8253450 8256429 2979 True 3424.0 3424 87.5040 23 2994 1 chr7D.!!$R1 2971
7 TraesCS4A01G471700 chr7D 7923953 7926887 2934 False 3158.0 3158 86.1310 23 2961 1 chr7D.!!$F3 2938
8 TraesCS4A01G471700 chr7D 7548360 7550968 2608 False 2492.0 2492 84.0030 387 2984 1 chr7D.!!$F1 2597
9 TraesCS4A01G471700 chr7D 8085336 8087891 2555 False 2462.0 2462 84.1780 445 2990 1 chr7D.!!$F6 2545
10 TraesCS4A01G471700 chr7D 7561054 7564605 3551 False 1983.0 3341 84.8795 393 3846 2 chr7D.!!$F12 3453
11 TraesCS4A01G471700 chr7D 8223077 8224727 1650 False 1369.0 1369 81.9100 122 1771 1 chr7D.!!$F8 1649
12 TraesCS4A01G471700 chr7D 7714967 7715900 933 False 745.0 745 81.1440 2995 3934 1 chr7D.!!$F2 939
13 TraesCS4A01G471700 chr7D 8179428 8180371 943 False 706.0 706 80.3140 2995 3942 1 chr7D.!!$F7 947
14 TraesCS4A01G471700 chr7D 8033075 8033988 913 False 627.0 627 79.1080 2995 3911 1 chr7D.!!$F4 916
15 TraesCS4A01G471700 chr7D 8235844 8236790 946 False 619.0 619 78.6240 2995 3947 1 chr7D.!!$F9 952
16 TraesCS4A01G471700 chr7D 8060738 8061389 651 False 470.0 470 79.7870 3192 3846 1 chr7D.!!$F5 654
17 TraesCS4A01G471700 chr7A 8692482 8695457 2975 True 3365.0 3365 87.1740 23 2994 1 chr7A.!!$R1 2971
18 TraesCS4A01G471700 chr7A 56174048 56175951 1903 False 1836.0 1836 84.2080 263 2153 1 chr7A.!!$F2 1890
19 TraesCS4A01G471700 chr7A 56204502 56206420 1918 False 1661.0 1661 82.7050 33 1921 1 chr7A.!!$F3 1888
20 TraesCS4A01G471700 chr3B 741463141 741466555 3414 False 1853.5 2953 84.1235 387 3947 2 chr3B.!!$F2 3560
21 TraesCS4A01G471700 chr5B 37481581 37483360 1779 False 1629.0 1629 83.2490 383 2160 1 chr5B.!!$F2 1777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 543 0.394762 TGACCAGCAAGATCATGGCC 60.395 55.0 0.0 0.0 37.64 5.36 F
1138 1203 0.609131 AGGGGTCCAGCAACATTTCG 60.609 55.0 0.0 0.0 0.00 3.46 F
2921 3025 0.323451 TGGCTCTTGGTCGCTCTAGA 60.323 55.0 0.0 0.0 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1420 1485 0.821517 ACCGTGCACATTATCGAGGA 59.178 50.0 18.64 0.0 0.0 3.71 R
2971 3075 0.322456 CCTCCACCTTCCGCATCAAA 60.322 55.0 0.00 0.0 0.0 2.69 R
3722 4087 0.476771 GGTGAACTGTTCCCCTCCAA 59.523 55.0 17.26 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.975168 GGACCACTTGTAGGTACATGT 57.025 47.619 2.69 2.69 42.89 3.21
31 32 7.981789 ACTTGTAGGTACATGTATCAGTCAATG 59.018 37.037 18.22 13.53 41.12 2.82
45 46 3.681897 CAGTCAATGTACAGCTCTTGGAC 59.318 47.826 0.33 0.00 41.37 4.02
55 56 1.836802 AGCTCTTGGACTCCTTGATCC 59.163 52.381 0.00 0.00 35.37 3.36
74 75 4.860802 TCCTATCTCCATTTGCTTCCAA 57.139 40.909 0.00 0.00 0.00 3.53
123 124 1.520342 CAGCCTTGGCTAGCGAGAC 60.520 63.158 14.35 6.62 0.00 3.36
173 175 4.553756 CAGTAGTACGCTGCTCTATCAA 57.446 45.455 7.39 0.00 35.46 2.57
181 183 3.193263 CGCTGCTCTATCAACAATCTGT 58.807 45.455 0.00 0.00 0.00 3.41
236 238 1.487976 CTCTGCTCAATCCTTGGCCTA 59.512 52.381 3.32 0.00 0.00 3.93
311 337 5.126779 GCCAAAACCCCACTGAAATTTTTA 58.873 37.500 0.00 0.00 0.00 1.52
320 346 8.745590 ACCCCACTGAAATTTTTATGTATGTAC 58.254 33.333 0.00 0.00 0.00 2.90
350 376 7.916077 AGTATGTACAAGAGGGCTATAAACT 57.084 36.000 0.00 0.00 0.00 2.66
351 377 8.320338 AGTATGTACAAGAGGGCTATAAACTT 57.680 34.615 0.00 0.00 0.00 2.66
378 405 8.726988 GTTATACAAGCTAAGTCATTGTGGAAA 58.273 33.333 0.00 0.00 37.69 3.13
381 422 7.145932 ACAAGCTAAGTCATTGTGGAAATAC 57.854 36.000 0.00 0.00 35.89 1.89
385 432 7.820648 AGCTAAGTCATTGTGGAAATACAAAG 58.179 34.615 0.00 0.00 43.13 2.77
437 490 6.890268 TCTGTCAGTGCTTAACCTCTATTCTA 59.110 38.462 0.00 0.00 0.00 2.10
439 492 8.762481 TGTCAGTGCTTAACCTCTATTCTATA 57.238 34.615 0.00 0.00 0.00 1.31
483 543 0.394762 TGACCAGCAAGATCATGGCC 60.395 55.000 0.00 0.00 37.64 5.36
498 558 1.743252 GGCCGAGTCCTTGCTTCTG 60.743 63.158 0.00 0.00 0.00 3.02
507 567 2.761208 GTCCTTGCTTCTGCCTCTAGTA 59.239 50.000 0.00 0.00 38.71 1.82
601 661 1.595109 CGAATGCTGGAGCGCCATA 60.595 57.895 10.50 2.43 44.91 2.74
602 662 1.835483 CGAATGCTGGAGCGCCATAC 61.835 60.000 10.50 6.14 44.91 2.39
669 729 5.240844 TGAGACAAACGAGTATGTCAAGAGA 59.759 40.000 8.43 0.00 46.55 3.10
694 754 3.558931 TGAAGGAGCTCAAGTTTGTCA 57.441 42.857 17.19 4.74 0.00 3.58
696 756 3.118261 TGAAGGAGCTCAAGTTTGTCACT 60.118 43.478 17.19 0.00 37.30 3.41
906 967 5.514274 TGAACAAGTTTGGATTGGAGAAC 57.486 39.130 0.00 0.00 31.76 3.01
922 986 3.373220 GGAGAACTCTGTCCATAGGGAGA 60.373 52.174 0.00 0.00 46.12 3.71
923 987 4.282496 GAGAACTCTGTCCATAGGGAGAA 58.718 47.826 0.00 0.00 46.12 2.87
924 988 4.285863 AGAACTCTGTCCATAGGGAGAAG 58.714 47.826 0.00 0.00 46.12 2.85
925 989 3.767309 ACTCTGTCCATAGGGAGAAGT 57.233 47.619 0.00 0.00 46.12 3.01
931 995 3.706594 TGTCCATAGGGAGAAGTAGCAAG 59.293 47.826 0.00 0.00 46.12 4.01
1138 1203 0.609131 AGGGGTCCAGCAACATTTCG 60.609 55.000 0.00 0.00 0.00 3.46
1141 1206 1.610624 GGGTCCAGCAACATTTCGAGA 60.611 52.381 0.00 0.00 0.00 4.04
1183 1248 5.048991 GTGTCCGACACCTTTGATGTTATTT 60.049 40.000 19.30 0.00 43.05 1.40
1192 1257 8.143835 ACACCTTTGATGTTATTTCTCTTTTGG 58.856 33.333 0.00 0.00 0.00 3.28
1211 1276 6.870895 TTTGGAATCCATCATTGAATTGGA 57.129 33.333 1.39 10.64 43.37 3.53
1217 1282 8.086522 GGAATCCATCATTGAATTGGATGTAAG 58.913 37.037 18.28 0.00 46.93 2.34
1241 1306 3.276857 GAAGATGTGACATGCCTGACAT 58.723 45.455 1.23 0.00 40.66 3.06
1320 1385 3.745975 TCGTTCTTGATGATGTGTGGAAC 59.254 43.478 0.00 0.00 37.35 3.62
1339 1404 2.808919 ACGAAGATGAGAGGAAGTGGA 58.191 47.619 0.00 0.00 0.00 4.02
1380 1445 2.036958 TGTGTTCTGTTGGTGGACTG 57.963 50.000 0.00 0.00 0.00 3.51
1406 1471 7.554835 GGGAAGTGTTATATTGGTTACATGTCA 59.445 37.037 0.00 0.00 0.00 3.58
1420 1485 2.760092 ACATGTCAAACCAAGCAAGTGT 59.240 40.909 0.00 0.00 0.00 3.55
1425 1490 1.002468 CAAACCAAGCAAGTGTCCTCG 60.002 52.381 0.00 0.00 0.00 4.63
1453 1518 2.224159 ACGGTCAAGCCCCATGAGT 61.224 57.895 0.00 0.00 0.00 3.41
1468 1533 6.389906 CCCCATGAGTTAACATTTTTGAGTC 58.610 40.000 8.61 0.00 0.00 3.36
1609 1681 3.330405 TCTCAAGACAATGGGTGGATTGA 59.670 43.478 0.00 0.00 36.89 2.57
1615 1687 4.474651 AGACAATGGGTGGATTGATGAGTA 59.525 41.667 0.00 0.00 36.89 2.59
1665 1737 4.394920 GCCATCGAAGAAAGTAACATTGGA 59.605 41.667 0.00 0.00 43.58 3.53
1668 1740 6.036517 CCATCGAAGAAAGTAACATTGGAGAG 59.963 42.308 0.00 0.00 43.58 3.20
1802 1874 4.651503 TGAGATGGAGAAGGATAGGTTGAC 59.348 45.833 0.00 0.00 0.00 3.18
1842 1914 4.316025 TGGTTTTATTCAGGAAGAGGGG 57.684 45.455 0.00 0.00 0.00 4.79
1937 2009 3.788227 AGTGGTGGTCAAATCTGCTAA 57.212 42.857 0.00 0.00 0.00 3.09
1943 2024 5.189736 TGGTGGTCAAATCTGCTAACTATCT 59.810 40.000 0.00 0.00 0.00 1.98
1948 2029 6.599638 GGTCAAATCTGCTAACTATCTTGGTT 59.400 38.462 0.00 0.00 0.00 3.67
2033 2114 1.995484 CACGGATGAGTGTGCAAGTAG 59.005 52.381 0.00 0.00 37.35 2.57
2106 2187 4.691860 AACATCAAAGGCTGAATTCGAG 57.308 40.909 0.04 1.09 37.67 4.04
2281 2365 3.950395 CTCCCCTTCTCCAATTGTCATTC 59.050 47.826 4.43 0.00 0.00 2.67
2348 2432 3.412386 GGTCTGACATTGTTAGGTTGCT 58.588 45.455 10.38 0.00 0.00 3.91
2461 2545 5.819991 TGAGAAAGCTCACCCATCTTTATT 58.180 37.500 0.00 0.00 45.88 1.40
2499 2583 6.301169 AGTCTTAGAAGTATGTCCCCAAAG 57.699 41.667 0.00 0.00 0.00 2.77
2571 2655 2.273619 GGAGATGGCCTTGGGATAGAT 58.726 52.381 3.32 0.00 0.00 1.98
2597 2681 4.681483 GCTCAAAGATTTGCAACACCTTAC 59.319 41.667 0.00 0.00 38.05 2.34
2639 2723 8.239998 GCTAAATTTGAGCAAGATAAAGAGTGT 58.760 33.333 0.00 0.00 39.84 3.55
2647 2731 6.039616 AGCAAGATAAAGAGTGTCGAGAATC 58.960 40.000 1.19 1.19 0.00 2.52
2662 2751 5.181245 GTCGAGAATCCAAAAGAATCCAACA 59.819 40.000 0.00 0.00 0.00 3.33
2669 2758 6.284891 TCCAAAAGAATCCAACATCAATCC 57.715 37.500 0.00 0.00 0.00 3.01
2804 2908 4.445448 GGAGATACATGGATATGATGGCCC 60.445 50.000 0.00 0.00 37.73 5.80
2828 2932 7.286087 CCCAGAAATATCACAATGGATGAGAAA 59.714 37.037 0.00 0.00 32.20 2.52
2829 2933 8.133627 CCAGAAATATCACAATGGATGAGAAAC 58.866 37.037 0.00 0.00 32.20 2.78
2830 2934 8.133627 CAGAAATATCACAATGGATGAGAAACC 58.866 37.037 0.00 0.00 32.20 3.27
2831 2935 6.966534 AATATCACAATGGATGAGAAACCC 57.033 37.500 0.00 0.00 32.20 4.11
2832 2936 4.598036 ATCACAATGGATGAGAAACCCT 57.402 40.909 0.00 0.00 32.20 4.34
2833 2937 3.955471 TCACAATGGATGAGAAACCCTC 58.045 45.455 0.00 0.00 42.30 4.30
2844 2948 5.825593 TGAGAAACCCTCAGATGTTTAGT 57.174 39.130 0.00 0.00 46.38 2.24
2845 2949 6.187727 TGAGAAACCCTCAGATGTTTAGTT 57.812 37.500 0.00 0.00 46.38 2.24
2846 2950 6.231211 TGAGAAACCCTCAGATGTTTAGTTC 58.769 40.000 0.00 0.00 46.38 3.01
2847 2951 6.043243 TGAGAAACCCTCAGATGTTTAGTTCT 59.957 38.462 0.00 0.00 46.38 3.01
2848 2952 6.842676 AGAAACCCTCAGATGTTTAGTTCTT 58.157 36.000 0.00 0.00 34.97 2.52
2849 2953 7.290813 AGAAACCCTCAGATGTTTAGTTCTTT 58.709 34.615 0.00 0.00 34.97 2.52
2850 2954 6.884280 AACCCTCAGATGTTTAGTTCTTTG 57.116 37.500 0.00 0.00 0.00 2.77
2851 2955 6.187727 ACCCTCAGATGTTTAGTTCTTTGA 57.812 37.500 0.00 0.00 0.00 2.69
2852 2956 6.601332 ACCCTCAGATGTTTAGTTCTTTGAA 58.399 36.000 0.00 0.00 0.00 2.69
2853 2957 7.060421 ACCCTCAGATGTTTAGTTCTTTGAAA 58.940 34.615 0.00 0.00 0.00 2.69
2854 2958 7.229506 ACCCTCAGATGTTTAGTTCTTTGAAAG 59.770 37.037 0.00 0.00 0.00 2.62
2855 2959 7.445402 CCCTCAGATGTTTAGTTCTTTGAAAGA 59.555 37.037 3.02 3.02 35.26 2.52
2856 2960 8.840321 CCTCAGATGTTTAGTTCTTTGAAAGAA 58.160 33.333 15.81 15.81 44.82 2.52
2871 2975 9.567848 TCTTTGAAAGAACTTGAAATGTACAAC 57.432 29.630 4.94 0.00 33.83 3.32
2872 2976 9.573133 CTTTGAAAGAACTTGAAATGTACAACT 57.427 29.630 0.00 0.00 0.00 3.16
2873 2977 8.909708 TTGAAAGAACTTGAAATGTACAACTG 57.090 30.769 0.00 0.00 0.00 3.16
2874 2978 6.972328 TGAAAGAACTTGAAATGTACAACTGC 59.028 34.615 0.00 0.00 0.00 4.40
2875 2979 5.438761 AGAACTTGAAATGTACAACTGCC 57.561 39.130 0.00 0.00 0.00 4.85
2876 2980 4.278419 AGAACTTGAAATGTACAACTGCCC 59.722 41.667 0.00 0.00 0.00 5.36
2877 2981 3.561143 ACTTGAAATGTACAACTGCCCA 58.439 40.909 0.00 0.00 0.00 5.36
2878 2982 3.317993 ACTTGAAATGTACAACTGCCCAC 59.682 43.478 0.00 0.00 0.00 4.61
2879 2983 2.937519 TGAAATGTACAACTGCCCACA 58.062 42.857 0.00 0.00 0.00 4.17
2880 2984 3.291584 TGAAATGTACAACTGCCCACAA 58.708 40.909 0.00 0.00 0.00 3.33
2881 2985 3.894427 TGAAATGTACAACTGCCCACAAT 59.106 39.130 0.00 0.00 0.00 2.71
2882 2986 3.940209 AATGTACAACTGCCCACAATG 57.060 42.857 0.00 0.00 0.00 2.82
2883 2987 0.958091 TGTACAACTGCCCACAATGC 59.042 50.000 0.00 0.00 0.00 3.56
2884 2988 0.958091 GTACAACTGCCCACAATGCA 59.042 50.000 0.00 0.00 37.17 3.96
2885 2989 1.339610 GTACAACTGCCCACAATGCAA 59.660 47.619 0.00 0.00 38.46 4.08
2886 2990 0.390124 ACAACTGCCCACAATGCAAG 59.610 50.000 0.00 0.00 38.46 4.01
2887 2991 0.675083 CAACTGCCCACAATGCAAGA 59.325 50.000 0.00 0.00 38.46 3.02
2888 2992 0.963962 AACTGCCCACAATGCAAGAG 59.036 50.000 0.00 0.00 38.46 2.85
2889 2993 1.214589 CTGCCCACAATGCAAGAGC 59.785 57.895 0.00 0.00 38.46 4.09
2904 3008 3.755378 GCAAGAGCATCCCTGTAATATGG 59.245 47.826 0.00 0.00 41.58 2.74
2905 3009 3.710209 AGAGCATCCCTGTAATATGGC 57.290 47.619 0.00 0.00 33.66 4.40
2906 3010 3.254960 AGAGCATCCCTGTAATATGGCT 58.745 45.455 0.00 0.00 33.66 4.75
2907 3011 3.262915 AGAGCATCCCTGTAATATGGCTC 59.737 47.826 0.00 0.00 33.66 4.70
2908 3012 3.254960 AGCATCCCTGTAATATGGCTCT 58.745 45.455 0.00 0.00 0.00 4.09
2909 3013 3.654806 AGCATCCCTGTAATATGGCTCTT 59.345 43.478 0.00 0.00 0.00 2.85
2910 3014 3.755378 GCATCCCTGTAATATGGCTCTTG 59.245 47.826 0.00 0.00 0.00 3.02
2911 3015 4.330250 CATCCCTGTAATATGGCTCTTGG 58.670 47.826 0.00 0.00 0.00 3.61
2912 3016 3.393687 TCCCTGTAATATGGCTCTTGGT 58.606 45.455 0.00 0.00 0.00 3.67
2913 3017 3.391296 TCCCTGTAATATGGCTCTTGGTC 59.609 47.826 0.00 0.00 0.00 4.02
2914 3018 3.393800 CCTGTAATATGGCTCTTGGTCG 58.606 50.000 0.00 0.00 0.00 4.79
2915 3019 2.802816 CTGTAATATGGCTCTTGGTCGC 59.197 50.000 0.00 0.00 0.00 5.19
2916 3020 2.434336 TGTAATATGGCTCTTGGTCGCT 59.566 45.455 0.00 0.00 0.00 4.93
2917 3021 2.246719 AATATGGCTCTTGGTCGCTC 57.753 50.000 0.00 0.00 0.00 5.03
2918 3022 1.418334 ATATGGCTCTTGGTCGCTCT 58.582 50.000 0.00 0.00 0.00 4.09
2919 3023 2.067365 TATGGCTCTTGGTCGCTCTA 57.933 50.000 0.00 0.00 0.00 2.43
2920 3024 0.749649 ATGGCTCTTGGTCGCTCTAG 59.250 55.000 0.00 0.00 0.00 2.43
2921 3025 0.323451 TGGCTCTTGGTCGCTCTAGA 60.323 55.000 0.00 0.00 0.00 2.43
2922 3026 0.383949 GGCTCTTGGTCGCTCTAGAG 59.616 60.000 15.85 15.85 37.71 2.43
2923 3027 1.384525 GCTCTTGGTCGCTCTAGAGA 58.615 55.000 24.24 0.09 37.00 3.10
2924 3028 1.953686 GCTCTTGGTCGCTCTAGAGAT 59.046 52.381 24.24 0.00 37.00 2.75
2925 3029 2.360801 GCTCTTGGTCGCTCTAGAGATT 59.639 50.000 24.24 0.00 37.00 2.40
2926 3030 3.795150 GCTCTTGGTCGCTCTAGAGATTG 60.795 52.174 24.24 11.82 37.00 2.67
2927 3031 3.357203 TCTTGGTCGCTCTAGAGATTGT 58.643 45.455 24.24 0.00 0.00 2.71
2928 3032 3.129462 TCTTGGTCGCTCTAGAGATTGTG 59.871 47.826 24.24 3.89 0.00 3.33
2929 3033 2.447443 TGGTCGCTCTAGAGATTGTGT 58.553 47.619 24.24 0.00 0.00 3.72
2930 3034 2.423892 TGGTCGCTCTAGAGATTGTGTC 59.576 50.000 24.24 2.62 0.00 3.67
2931 3035 2.223618 GGTCGCTCTAGAGATTGTGTCC 60.224 54.545 24.24 7.30 0.00 4.02
2932 3036 2.685897 GTCGCTCTAGAGATTGTGTCCT 59.314 50.000 24.24 0.00 0.00 3.85
2933 3037 3.129638 GTCGCTCTAGAGATTGTGTCCTT 59.870 47.826 24.24 0.00 0.00 3.36
2934 3038 4.335874 GTCGCTCTAGAGATTGTGTCCTTA 59.664 45.833 24.24 0.00 0.00 2.69
2935 3039 4.335874 TCGCTCTAGAGATTGTGTCCTTAC 59.664 45.833 24.24 0.00 0.00 2.34
2936 3040 4.336993 CGCTCTAGAGATTGTGTCCTTACT 59.663 45.833 24.24 0.00 0.00 2.24
2937 3041 5.163602 CGCTCTAGAGATTGTGTCCTTACTT 60.164 44.000 24.24 0.00 0.00 2.24
2938 3042 6.038382 CGCTCTAGAGATTGTGTCCTTACTTA 59.962 42.308 24.24 0.00 0.00 2.24
2939 3043 7.415318 CGCTCTAGAGATTGTGTCCTTACTTAA 60.415 40.741 24.24 0.00 0.00 1.85
2940 3044 7.918562 GCTCTAGAGATTGTGTCCTTACTTAAG 59.081 40.741 24.24 0.00 0.00 1.85
2941 3045 9.179909 CTCTAGAGATTGTGTCCTTACTTAAGA 57.820 37.037 15.05 0.00 35.33 2.10
2942 3046 9.702253 TCTAGAGATTGTGTCCTTACTTAAGAT 57.298 33.333 10.09 0.00 35.33 2.40
2943 3047 9.743057 CTAGAGATTGTGTCCTTACTTAAGATG 57.257 37.037 10.09 0.00 35.33 2.90
2944 3048 7.560368 AGAGATTGTGTCCTTACTTAAGATGG 58.440 38.462 10.09 8.01 35.33 3.51
2945 3049 7.400339 AGAGATTGTGTCCTTACTTAAGATGGA 59.600 37.037 10.09 10.19 35.33 3.41
2946 3050 8.095452 AGATTGTGTCCTTACTTAAGATGGAT 57.905 34.615 10.09 0.00 35.33 3.41
2947 3051 9.213777 AGATTGTGTCCTTACTTAAGATGGATA 57.786 33.333 10.09 8.66 35.33 2.59
2948 3052 9.832445 GATTGTGTCCTTACTTAAGATGGATAA 57.168 33.333 10.09 9.91 35.33 1.75
2949 3053 9.614792 ATTGTGTCCTTACTTAAGATGGATAAC 57.385 33.333 10.09 14.10 35.33 1.89
2950 3054 7.562135 TGTGTCCTTACTTAAGATGGATAACC 58.438 38.462 10.09 2.86 35.33 2.85
2951 3055 7.402071 TGTGTCCTTACTTAAGATGGATAACCT 59.598 37.037 10.09 0.00 35.33 3.50
2952 3056 7.927092 GTGTCCTTACTTAAGATGGATAACCTC 59.073 40.741 10.09 1.94 35.33 3.85
2953 3057 7.622081 TGTCCTTACTTAAGATGGATAACCTCA 59.378 37.037 10.09 4.21 35.33 3.86
2954 3058 7.927092 GTCCTTACTTAAGATGGATAACCTCAC 59.073 40.741 10.09 0.00 35.33 3.51
2955 3059 7.622081 TCCTTACTTAAGATGGATAACCTCACA 59.378 37.037 10.09 0.00 35.33 3.58
2956 3060 8.265055 CCTTACTTAAGATGGATAACCTCACAA 58.735 37.037 10.09 0.00 35.33 3.33
2957 3061 9.099454 CTTACTTAAGATGGATAACCTCACAAC 57.901 37.037 10.09 0.00 35.33 3.32
2958 3062 7.016153 ACTTAAGATGGATAACCTCACAACA 57.984 36.000 10.09 0.00 37.04 3.33
2959 3063 7.633789 ACTTAAGATGGATAACCTCACAACAT 58.366 34.615 10.09 0.00 37.04 2.71
2960 3064 8.109634 ACTTAAGATGGATAACCTCACAACATT 58.890 33.333 10.09 0.00 37.04 2.71
2961 3065 6.764308 AAGATGGATAACCTCACAACATTG 57.236 37.500 0.00 0.00 37.04 2.82
2962 3066 5.819991 AGATGGATAACCTCACAACATTGT 58.180 37.500 0.00 0.00 38.36 2.71
2978 3082 7.138736 ACAACATTGTGTAGTAACTTTGATGC 58.861 34.615 0.00 0.00 40.49 3.91
2979 3083 5.927030 ACATTGTGTAGTAACTTTGATGCG 58.073 37.500 0.00 0.00 0.00 4.73
2980 3084 5.106712 ACATTGTGTAGTAACTTTGATGCGG 60.107 40.000 0.00 0.00 0.00 5.69
2981 3085 4.260139 TGTGTAGTAACTTTGATGCGGA 57.740 40.909 0.00 0.00 0.00 5.54
2982 3086 4.633175 TGTGTAGTAACTTTGATGCGGAA 58.367 39.130 0.00 0.00 0.00 4.30
2983 3087 4.688879 TGTGTAGTAACTTTGATGCGGAAG 59.311 41.667 0.00 0.00 0.00 3.46
2984 3088 4.092968 GTGTAGTAACTTTGATGCGGAAGG 59.907 45.833 0.00 0.00 0.00 3.46
2985 3089 3.418684 AGTAACTTTGATGCGGAAGGT 57.581 42.857 0.00 0.00 0.00 3.50
2986 3090 3.074412 AGTAACTTTGATGCGGAAGGTG 58.926 45.455 0.00 0.00 0.00 4.00
2987 3091 1.247567 AACTTTGATGCGGAAGGTGG 58.752 50.000 0.00 0.00 0.00 4.61
2988 3092 0.400213 ACTTTGATGCGGAAGGTGGA 59.600 50.000 0.00 0.00 0.00 4.02
2989 3093 1.089920 CTTTGATGCGGAAGGTGGAG 58.910 55.000 0.00 0.00 0.00 3.86
2990 3094 0.322456 TTTGATGCGGAAGGTGGAGG 60.322 55.000 0.00 0.00 0.00 4.30
2991 3095 1.198094 TTGATGCGGAAGGTGGAGGA 61.198 55.000 0.00 0.00 0.00 3.71
2992 3096 0.982852 TGATGCGGAAGGTGGAGGAT 60.983 55.000 0.00 0.00 0.00 3.24
2993 3097 0.533755 GATGCGGAAGGTGGAGGATG 60.534 60.000 0.00 0.00 0.00 3.51
3009 3113 4.686191 AGGATGAGCCTCAGATGTTTAG 57.314 45.455 0.00 0.00 46.97 1.85
3033 3137 7.771183 AGCTGTTTGAAAGAACTTGAAATGTA 58.229 30.769 0.00 0.00 0.00 2.29
3061 3165 3.433598 GCCCAAGATGCAAGAGTATACCA 60.434 47.826 0.00 0.00 0.00 3.25
3073 3177 7.106239 GCAAGAGTATACCAATAGTATGGCAT 58.894 38.462 4.88 4.88 44.75 4.40
3082 3186 4.396166 CCAATAGTATGGCATTCGGAATCC 59.604 45.833 4.78 6.30 32.78 3.01
3092 3196 3.144506 CATTCGGAATCCCTGGAGATTG 58.855 50.000 13.05 3.31 36.60 2.67
3118 3480 6.098409 TGTCCTTACAGAAGATGGATAACCTC 59.902 42.308 0.00 0.00 34.25 3.85
3124 3486 3.253677 AGAAGATGGATAACCTCGTAGCG 59.746 47.826 0.00 0.00 37.04 4.26
3127 3489 2.572191 TGGATAACCTCGTAGCGTTG 57.428 50.000 0.00 0.00 37.04 4.10
3137 3499 3.120060 CCTCGTAGCGTTGTGTAGTAACT 60.120 47.826 0.00 0.00 0.00 2.24
3211 3573 7.120432 AGGTTGAAGAAGATGAGCTTGATTAAC 59.880 37.037 0.00 0.00 36.83 2.01
3215 3577 9.725019 TGAAGAAGATGAGCTTGATTAACTTAA 57.275 29.630 0.00 0.00 36.83 1.85
3228 3590 7.739498 TGATTAACTTAACAAACCTGGAGAC 57.261 36.000 0.00 0.00 0.00 3.36
3231 3593 7.739498 TTAACTTAACAAACCTGGAGACATC 57.261 36.000 0.00 0.00 41.51 3.06
3233 3595 4.039973 ACTTAACAAACCTGGAGACATCGA 59.960 41.667 0.00 0.00 41.51 3.59
3312 3674 5.582953 AGAGCTAGAGATCAGATATTGCCT 58.417 41.667 0.00 0.00 31.88 4.75
3313 3675 5.419788 AGAGCTAGAGATCAGATATTGCCTG 59.580 44.000 0.00 0.00 31.88 4.85
3373 3735 8.263640 AGCAAGTTGACAATAGATAGAGTTCAT 58.736 33.333 7.16 0.00 0.00 2.57
3393 3755 9.640963 AGTTCATAGTACTACAATCACTTCAAC 57.359 33.333 4.31 0.00 0.00 3.18
3406 3768 6.610075 ATCACTTCAACTTTTATGGGCATT 57.390 33.333 0.00 0.00 0.00 3.56
3407 3769 7.716799 ATCACTTCAACTTTTATGGGCATTA 57.283 32.000 0.00 0.00 0.00 1.90
3421 3783 2.171003 GGCATTAGTTTGGGCTCTTGT 58.829 47.619 0.00 0.00 0.00 3.16
3436 3801 2.293122 CTCTTGTCCATTTGTCGCCAAA 59.707 45.455 0.00 0.00 44.27 3.28
3438 3803 3.320541 TCTTGTCCATTTGTCGCCAAATT 59.679 39.130 0.86 0.00 46.61 1.82
3439 3804 4.520874 TCTTGTCCATTTGTCGCCAAATTA 59.479 37.500 0.86 0.00 46.61 1.40
3444 3809 7.551585 TGTCCATTTGTCGCCAAATTATTAAT 58.448 30.769 0.86 0.00 46.61 1.40
3481 3846 2.092753 AGACATACCCATGTTGCCTCTG 60.093 50.000 0.00 0.00 45.58 3.35
3525 3890 8.753497 AGTCAAAGACCTCTTGAAAAACTTAT 57.247 30.769 0.00 0.00 36.12 1.73
3530 3895 7.264373 AGACCTCTTGAAAAACTTATGTGTG 57.736 36.000 0.00 0.00 0.00 3.82
3538 3903 7.246674 TGAAAAACTTATGTGTGTGACTCTC 57.753 36.000 0.00 0.00 0.00 3.20
3557 3922 0.107214 CGAAGGGCCCAATAGCTTGA 60.107 55.000 27.56 0.00 34.04 3.02
3559 3924 2.670939 GAAGGGCCCAATAGCTTGATT 58.329 47.619 27.56 4.63 34.04 2.57
3560 3925 2.077687 AGGGCCCAATAGCTTGATTG 57.922 50.000 27.56 0.00 36.70 2.67
3590 3955 4.094887 CCGGATTGTCCAGATTACAACTTG 59.905 45.833 0.00 0.00 39.51 3.16
3595 3960 4.385825 TGTCCAGATTACAACTTGTGGTC 58.614 43.478 4.57 3.01 0.00 4.02
3602 3967 6.039270 CAGATTACAACTTGTGGTCTGGAAAA 59.961 38.462 20.27 2.14 38.44 2.29
3604 3969 3.963129 ACAACTTGTGGTCTGGAAAAGA 58.037 40.909 0.00 0.00 0.00 2.52
3617 3982 4.573201 TCTGGAAAAGATTTTCGTTCGTGT 59.427 37.500 10.94 0.00 45.68 4.49
3696 4061 1.329913 TGCTTGGATCGCCTCTGCTA 61.330 55.000 0.00 0.00 34.43 3.49
3714 4079 8.680903 CCTCTGCTATCTGTGTATCAAAAATTT 58.319 33.333 0.00 0.00 0.00 1.82
3735 4100 2.364972 AACAACTTGGAGGGGAACAG 57.635 50.000 0.00 0.00 0.00 3.16
3752 4117 1.248486 CAGTTCACCGTCTGAGGAGA 58.752 55.000 0.00 0.00 34.02 3.71
3762 4127 2.037251 CGTCTGAGGAGAAAACCCTTCA 59.963 50.000 0.00 0.00 33.36 3.02
3766 4131 5.187967 GTCTGAGGAGAAAACCCTTCATCTA 59.812 44.000 0.00 0.00 33.36 1.98
3776 4141 1.627834 CCCTTCATCTATCCCTGGAGC 59.372 57.143 0.00 0.00 0.00 4.70
3778 4143 2.038295 CCTTCATCTATCCCTGGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
3831 4196 4.020128 AGCACTACCTTCAAACCTAGGAAG 60.020 45.833 17.98 8.41 40.11 3.46
3849 4214 2.029844 GTCTGGCCAAGCTGACGAC 61.030 63.158 7.01 4.93 0.00 4.34
3915 4280 0.249868 TTGTGTGGCCTCACTTCTCG 60.250 55.000 31.79 0.00 43.94 4.04
3942 4307 6.095440 AGGGAATTGAAGATTTGGTATTGTCG 59.905 38.462 0.00 0.00 0.00 4.35
3949 4314 7.722363 TGAAGATTTGGTATTGTCGAGCTATA 58.278 34.615 0.00 0.00 0.00 1.31
3950 4315 8.201464 TGAAGATTTGGTATTGTCGAGCTATAA 58.799 33.333 0.00 0.00 0.00 0.98
3951 4316 7.948278 AGATTTGGTATTGTCGAGCTATAAC 57.052 36.000 0.00 0.00 0.00 1.89
3952 4317 7.727181 AGATTTGGTATTGTCGAGCTATAACT 58.273 34.615 0.00 0.00 0.00 2.24
3953 4318 8.857098 AGATTTGGTATTGTCGAGCTATAACTA 58.143 33.333 0.00 0.00 0.00 2.24
3954 4319 9.130312 GATTTGGTATTGTCGAGCTATAACTAG 57.870 37.037 0.00 0.00 0.00 2.57
3955 4320 7.578310 TTGGTATTGTCGAGCTATAACTAGT 57.422 36.000 0.00 0.00 0.00 2.57
3956 4321 6.967135 TGGTATTGTCGAGCTATAACTAGTG 58.033 40.000 0.00 0.00 0.00 2.74
3957 4322 6.016527 TGGTATTGTCGAGCTATAACTAGTGG 60.017 42.308 0.00 0.00 0.00 4.00
3958 4323 6.206243 GGTATTGTCGAGCTATAACTAGTGGA 59.794 42.308 0.00 0.00 0.00 4.02
3959 4324 6.710597 ATTGTCGAGCTATAACTAGTGGAA 57.289 37.500 0.00 0.00 0.00 3.53
3960 4325 6.519679 TTGTCGAGCTATAACTAGTGGAAA 57.480 37.500 0.00 0.00 0.00 3.13
3961 4326 6.519679 TGTCGAGCTATAACTAGTGGAAAA 57.480 37.500 0.00 0.00 0.00 2.29
3962 4327 6.927416 TGTCGAGCTATAACTAGTGGAAAAA 58.073 36.000 0.00 0.00 0.00 1.94
3963 4328 7.033791 TGTCGAGCTATAACTAGTGGAAAAAG 58.966 38.462 0.00 0.00 0.00 2.27
3964 4329 6.476053 GTCGAGCTATAACTAGTGGAAAAAGG 59.524 42.308 0.00 0.00 0.00 3.11
3965 4330 5.753921 CGAGCTATAACTAGTGGAAAAAGGG 59.246 44.000 0.00 0.00 0.00 3.95
3966 4331 6.629739 CGAGCTATAACTAGTGGAAAAAGGGT 60.630 42.308 0.00 0.00 0.00 4.34
3967 4332 6.651086 AGCTATAACTAGTGGAAAAAGGGTC 58.349 40.000 0.00 0.00 0.00 4.46
3968 4333 6.214819 AGCTATAACTAGTGGAAAAAGGGTCA 59.785 38.462 0.00 0.00 0.00 4.02
3969 4334 6.882678 GCTATAACTAGTGGAAAAAGGGTCAA 59.117 38.462 0.00 0.00 0.00 3.18
3970 4335 7.392393 GCTATAACTAGTGGAAAAAGGGTCAAA 59.608 37.037 0.00 0.00 0.00 2.69
3971 4336 9.462606 CTATAACTAGTGGAAAAAGGGTCAAAT 57.537 33.333 0.00 0.00 0.00 2.32
3972 4337 6.405278 AACTAGTGGAAAAAGGGTCAAATG 57.595 37.500 0.00 0.00 0.00 2.32
3973 4338 5.454966 ACTAGTGGAAAAAGGGTCAAATGT 58.545 37.500 0.00 0.00 0.00 2.71
3974 4339 4.670896 AGTGGAAAAAGGGTCAAATGTG 57.329 40.909 0.00 0.00 0.00 3.21
3975 4340 4.285863 AGTGGAAAAAGGGTCAAATGTGA 58.714 39.130 0.00 0.00 0.00 3.58
3976 4341 4.714308 AGTGGAAAAAGGGTCAAATGTGAA 59.286 37.500 0.00 0.00 34.87 3.18
3977 4342 5.049828 GTGGAAAAAGGGTCAAATGTGAAG 58.950 41.667 0.00 0.00 34.87 3.02
3978 4343 4.058124 GGAAAAAGGGTCAAATGTGAAGC 58.942 43.478 0.00 0.00 34.87 3.86
3979 4344 4.442753 GGAAAAAGGGTCAAATGTGAAGCA 60.443 41.667 0.00 0.00 34.87 3.91
3980 4345 3.733443 AAAGGGTCAAATGTGAAGCAC 57.267 42.857 0.00 0.00 34.87 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.975168 ACATGTACCTACAAGTGGTCC 57.025 47.619 0.00 0.00 39.99 4.46
1 2 6.127423 ACTGATACATGTACCTACAAGTGGTC 60.127 42.308 7.96 0.00 38.42 4.02
2 3 5.720041 ACTGATACATGTACCTACAAGTGGT 59.280 40.000 7.96 0.00 38.42 4.16
3 4 6.127451 TGACTGATACATGTACCTACAAGTGG 60.127 42.308 7.96 0.00 38.42 4.00
4 5 6.863275 TGACTGATACATGTACCTACAAGTG 58.137 40.000 7.96 0.00 38.42 3.16
5 6 7.476540 TTGACTGATACATGTACCTACAAGT 57.523 36.000 7.96 5.78 40.66 3.16
6 7 7.981789 ACATTGACTGATACATGTACCTACAAG 59.018 37.037 7.96 2.71 39.99 3.16
7 8 7.847096 ACATTGACTGATACATGTACCTACAA 58.153 34.615 7.96 11.25 39.99 2.41
8 9 7.418337 ACATTGACTGATACATGTACCTACA 57.582 36.000 7.96 5.82 40.98 2.74
9 10 8.410912 TGTACATTGACTGATACATGTACCTAC 58.589 37.037 7.96 1.36 41.91 3.18
10 11 8.528044 TGTACATTGACTGATACATGTACCTA 57.472 34.615 7.96 0.00 41.91 3.08
11 12 7.418337 TGTACATTGACTGATACATGTACCT 57.582 36.000 7.96 0.00 41.91 3.08
12 13 6.201044 GCTGTACATTGACTGATACATGTACC 59.799 42.308 7.96 0.00 41.91 3.34
13 14 6.980978 AGCTGTACATTGACTGATACATGTAC 59.019 38.462 7.96 12.38 42.52 2.90
14 15 7.068716 AGAGCTGTACATTGACTGATACATGTA 59.931 37.037 8.27 8.27 0.00 2.29
15 16 5.982356 AGCTGTACATTGACTGATACATGT 58.018 37.500 2.69 2.69 0.00 3.21
16 17 6.279123 AGAGCTGTACATTGACTGATACATG 58.721 40.000 0.00 0.00 0.00 3.21
17 18 6.477053 AGAGCTGTACATTGACTGATACAT 57.523 37.500 0.00 0.00 0.00 2.29
18 19 5.921962 AGAGCTGTACATTGACTGATACA 57.078 39.130 0.00 0.00 0.00 2.29
19 20 5.521735 CCAAGAGCTGTACATTGACTGATAC 59.478 44.000 8.22 0.00 0.00 2.24
20 21 5.422012 TCCAAGAGCTGTACATTGACTGATA 59.578 40.000 8.22 0.00 0.00 2.15
21 22 4.223700 TCCAAGAGCTGTACATTGACTGAT 59.776 41.667 8.22 0.00 0.00 2.90
31 32 2.563179 TCAAGGAGTCCAAGAGCTGTAC 59.437 50.000 12.86 0.00 0.00 2.90
45 46 5.002516 GCAAATGGAGATAGGATCAAGGAG 58.997 45.833 0.00 0.00 0.00 3.69
55 56 4.530875 AGGTTGGAAGCAAATGGAGATAG 58.469 43.478 0.00 0.00 0.00 2.08
74 75 0.764369 TGTGGTTGCTGGAGAGAGGT 60.764 55.000 0.00 0.00 0.00 3.85
123 124 4.778143 GCCGCCCCTGTGTAGGTG 62.778 72.222 0.00 0.00 42.96 4.00
173 175 9.683069 GTCAAAAATTGATCTTGTACAGATTGT 57.317 29.630 0.00 0.00 42.92 2.71
181 183 8.184848 TCAACAACGTCAAAAATTGATCTTGTA 58.815 29.630 13.93 3.45 42.47 2.41
192 194 4.768130 TTCACCTCAACAACGTCAAAAA 57.232 36.364 0.00 0.00 0.00 1.94
196 198 3.804036 AGAATTCACCTCAACAACGTCA 58.196 40.909 8.44 0.00 0.00 4.35
236 238 5.296780 TGAACAATCGAAGAAGAGCAAAACT 59.703 36.000 0.00 0.00 43.58 2.66
290 313 7.800155 ACATAAAAATTTCAGTGGGGTTTTG 57.200 32.000 0.00 0.00 0.00 2.44
320 346 5.010282 AGCCCTCTTGTACATACTTTTTGG 58.990 41.667 0.00 0.00 0.00 3.28
350 376 7.880713 TCCACAATGACTTAGCTTGTATAACAA 59.119 33.333 0.00 0.00 36.54 2.83
351 377 7.390823 TCCACAATGACTTAGCTTGTATAACA 58.609 34.615 0.00 0.00 32.14 2.41
367 394 6.884295 CCTCCTACTTTGTATTTCCACAATGA 59.116 38.462 8.35 0.00 38.18 2.57
368 395 6.884295 TCCTCCTACTTTGTATTTCCACAATG 59.116 38.462 0.00 0.00 38.18 2.82
378 405 7.750947 ACCTTGTAATCCTCCTACTTTGTAT 57.249 36.000 0.00 0.00 0.00 2.29
381 422 6.238648 ACAACCTTGTAATCCTCCTACTTTG 58.761 40.000 0.00 0.00 40.16 2.77
385 432 5.801380 TGAACAACCTTGTAATCCTCCTAC 58.199 41.667 0.00 0.00 41.31 3.18
454 514 4.908601 TCTTGCTGGTCAGAGGAATAAA 57.091 40.909 1.65 0.00 0.00 1.40
483 543 0.739112 GAGGCAGAAGCAAGGACTCG 60.739 60.000 0.00 0.00 44.61 4.18
552 612 4.284550 AGGCCACACATGCGGGTT 62.285 61.111 5.01 0.00 0.00 4.11
611 671 1.962822 TTCGCCAGCTTGCACTCAG 60.963 57.895 10.77 0.00 0.00 3.35
669 729 4.015084 CAAACTTGAGCTCCTTCATCCAT 58.985 43.478 12.15 0.00 0.00 3.41
694 754 1.080974 CGTCGTCGGCCTTGTAAGT 60.081 57.895 0.00 0.00 0.00 2.24
696 756 1.372004 CACGTCGTCGGCCTTGTAA 60.372 57.895 7.05 0.00 41.85 2.41
727 787 2.125147 GTGCAGCGCCTCATACCA 60.125 61.111 2.29 0.00 0.00 3.25
789 850 2.173669 GCTGTGGCGCGTGATGTAT 61.174 57.895 8.43 0.00 0.00 2.29
821 882 6.409524 TGAGTTTCCTGCTCATTTCAAAAT 57.590 33.333 0.00 0.00 37.98 1.82
906 967 3.572255 GCTACTTCTCCCTATGGACAGAG 59.428 52.174 0.00 0.00 35.03 3.35
922 986 1.407437 CCGGCAAGGATCTTGCTACTT 60.407 52.381 25.41 2.72 45.00 2.24
923 987 0.179000 CCGGCAAGGATCTTGCTACT 59.821 55.000 25.41 0.00 45.00 2.57
924 988 1.440145 GCCGGCAAGGATCTTGCTAC 61.440 60.000 24.80 14.82 45.00 3.58
925 989 1.153168 GCCGGCAAGGATCTTGCTA 60.153 57.895 24.80 0.00 45.00 3.49
931 995 2.109126 GTGTCTGCCGGCAAGGATC 61.109 63.158 32.09 18.26 45.00 3.36
1037 1102 1.529244 AACACCTGCACCTTCTGCC 60.529 57.895 0.00 0.00 46.51 4.85
1095 1160 6.747414 TGGTCATTATACACCATCTTAGCT 57.253 37.500 0.00 0.00 37.78 3.32
1138 1203 2.676839 CACAGTGCCACATCTTCATCTC 59.323 50.000 0.00 0.00 0.00 2.75
1141 1206 2.156917 CACACAGTGCCACATCTTCAT 58.843 47.619 0.00 0.00 0.00 2.57
1169 1234 9.933723 ATTCCAAAAGAGAAATAACATCAAAGG 57.066 29.630 0.00 0.00 0.00 3.11
1183 1248 7.966339 ATTCAATGATGGATTCCAAAAGAGA 57.034 32.000 9.98 3.16 36.95 3.10
1211 1276 4.637534 GCATGTCACATCTTCCACTTACAT 59.362 41.667 0.00 0.00 0.00 2.29
1217 1282 1.741706 CAGGCATGTCACATCTTCCAC 59.258 52.381 0.00 0.00 0.00 4.02
1241 1306 4.652421 TTCTTTTGCAACAGCTCAATCA 57.348 36.364 7.76 0.00 0.00 2.57
1242 1307 5.045872 AGTTTCTTTTGCAACAGCTCAATC 58.954 37.500 7.76 0.00 0.00 2.67
1320 1385 3.430098 CCTTCCACTTCCTCTCATCTTCG 60.430 52.174 0.00 0.00 0.00 3.79
1339 1404 0.990374 AGAGGCTTCAGCACATCCTT 59.010 50.000 0.00 0.00 44.36 3.36
1380 1445 7.554835 TGACATGTAACCAATATAACACTTCCC 59.445 37.037 0.00 0.00 0.00 3.97
1406 1471 1.134220 TCGAGGACACTTGCTTGGTTT 60.134 47.619 0.00 0.00 0.00 3.27
1409 1474 2.672961 TATCGAGGACACTTGCTTGG 57.327 50.000 0.00 0.00 0.00 3.61
1420 1485 0.821517 ACCGTGCACATTATCGAGGA 59.178 50.000 18.64 0.00 0.00 3.71
1425 1490 1.064060 GGCTTGACCGTGCACATTATC 59.936 52.381 18.64 8.54 0.00 1.75
1468 1533 5.458041 AACAATTCCCATGAGTCTTGTTG 57.542 39.130 12.52 5.67 35.97 3.33
1537 1606 2.951642 CAATACGCCTTCCAATGGTGAT 59.048 45.455 0.00 0.00 38.37 3.06
1609 1681 6.770785 TCCTGTACTTTTTGCTTTGTACTCAT 59.229 34.615 0.00 0.00 36.98 2.90
1615 1687 4.097892 CCACTCCTGTACTTTTTGCTTTGT 59.902 41.667 0.00 0.00 0.00 2.83
1665 1737 6.196918 TCATATTTGCCTCCATCATTCTCT 57.803 37.500 0.00 0.00 0.00 3.10
1668 1740 5.075493 ACCTCATATTTGCCTCCATCATTC 58.925 41.667 0.00 0.00 0.00 2.67
1802 1874 2.366266 CCATTTGCCATCCATAGTTGGG 59.634 50.000 0.00 0.00 43.81 4.12
1961 2042 7.758980 GGTCATGCATTTTACATACAATTGACA 59.241 33.333 13.59 0.00 0.00 3.58
1963 2044 8.065473 AGGTCATGCATTTTACATACAATTGA 57.935 30.769 13.59 0.00 0.00 2.57
2033 2114 5.390779 GCTTTCTGCTGAGACAATTCTTCTC 60.391 44.000 6.64 6.64 40.10 2.87
2106 2187 3.591196 TTGCATAACCCACTGATTTGC 57.409 42.857 0.00 0.00 0.00 3.68
2187 2271 3.120408 CCTTGTGTGATTTGCTCGAGAAG 60.120 47.826 18.75 6.41 0.00 2.85
2190 2274 2.416747 TCCTTGTGTGATTTGCTCGAG 58.583 47.619 8.45 8.45 0.00 4.04
2461 2545 6.488769 TCTAAGACTACCACAACCAGAAAA 57.511 37.500 0.00 0.00 0.00 2.29
2499 2583 6.183360 TGTGAAGGTTGTTCAATAGACCAAAC 60.183 38.462 0.00 0.00 34.39 2.93
2549 2633 1.991070 CTATCCCAAGGCCATCTCCAT 59.009 52.381 5.01 0.00 0.00 3.41
2571 2655 3.243501 GGTGTTGCAAATCTTTGAGCTGA 60.244 43.478 0.00 0.00 40.55 4.26
2639 2723 5.312895 TGTTGGATTCTTTTGGATTCTCGA 58.687 37.500 0.00 0.00 0.00 4.04
2647 2731 5.104374 CGGATTGATGTTGGATTCTTTTGG 58.896 41.667 0.00 0.00 0.00 3.28
2662 2751 8.792830 TCACTTAGATTTTTCTTCGGATTGAT 57.207 30.769 0.00 0.00 0.00 2.57
2669 2758 8.122952 ACAACAACTCACTTAGATTTTTCTTCG 58.877 33.333 0.00 0.00 0.00 3.79
2789 2893 4.687262 ATTTCTGGGCCATCATATCCAT 57.313 40.909 6.72 0.00 0.00 3.41
2804 2908 8.133627 GGTTTCTCATCCATTGTGATATTTCTG 58.866 37.037 0.00 0.00 0.00 3.02
2828 2932 6.187727 TCAAAGAACTAAACATCTGAGGGT 57.812 37.500 0.00 0.00 0.00 4.34
2829 2933 7.445402 TCTTTCAAAGAACTAAACATCTGAGGG 59.555 37.037 0.00 0.00 33.83 4.30
2830 2934 8.383318 TCTTTCAAAGAACTAAACATCTGAGG 57.617 34.615 0.00 0.00 33.83 3.86
2845 2949 9.567848 GTTGTACATTTCAAGTTCTTTCAAAGA 57.432 29.630 0.00 0.00 35.26 2.52
2846 2950 9.573133 AGTTGTACATTTCAAGTTCTTTCAAAG 57.427 29.630 0.00 0.00 0.00 2.77
2847 2951 9.352784 CAGTTGTACATTTCAAGTTCTTTCAAA 57.647 29.630 0.00 0.00 0.00 2.69
2848 2952 7.487829 GCAGTTGTACATTTCAAGTTCTTTCAA 59.512 33.333 0.00 0.00 0.00 2.69
2849 2953 6.972328 GCAGTTGTACATTTCAAGTTCTTTCA 59.028 34.615 0.00 0.00 0.00 2.69
2850 2954 6.417930 GGCAGTTGTACATTTCAAGTTCTTTC 59.582 38.462 0.00 0.00 0.00 2.62
2851 2955 6.273071 GGCAGTTGTACATTTCAAGTTCTTT 58.727 36.000 0.00 0.00 0.00 2.52
2852 2956 5.221244 GGGCAGTTGTACATTTCAAGTTCTT 60.221 40.000 0.00 0.00 0.00 2.52
2853 2957 4.278419 GGGCAGTTGTACATTTCAAGTTCT 59.722 41.667 0.00 0.00 0.00 3.01
2854 2958 4.037446 TGGGCAGTTGTACATTTCAAGTTC 59.963 41.667 0.00 0.00 0.00 3.01
2855 2959 3.957497 TGGGCAGTTGTACATTTCAAGTT 59.043 39.130 0.00 0.00 0.00 2.66
2856 2960 3.317993 GTGGGCAGTTGTACATTTCAAGT 59.682 43.478 0.00 0.00 0.00 3.16
2857 2961 3.317711 TGTGGGCAGTTGTACATTTCAAG 59.682 43.478 0.00 0.00 0.00 3.02
2858 2962 3.291584 TGTGGGCAGTTGTACATTTCAA 58.708 40.909 0.00 0.00 0.00 2.69
2859 2963 2.937519 TGTGGGCAGTTGTACATTTCA 58.062 42.857 0.00 0.00 0.00 2.69
2860 2964 4.236935 CATTGTGGGCAGTTGTACATTTC 58.763 43.478 0.00 0.00 0.00 2.17
2861 2965 3.554752 GCATTGTGGGCAGTTGTACATTT 60.555 43.478 0.00 0.00 0.00 2.32
2862 2966 2.029110 GCATTGTGGGCAGTTGTACATT 60.029 45.455 0.00 0.00 0.00 2.71
2863 2967 1.545582 GCATTGTGGGCAGTTGTACAT 59.454 47.619 0.00 0.00 0.00 2.29
2864 2968 0.958091 GCATTGTGGGCAGTTGTACA 59.042 50.000 0.00 0.00 0.00 2.90
2865 2969 0.958091 TGCATTGTGGGCAGTTGTAC 59.042 50.000 0.00 0.00 36.11 2.90
2866 2970 1.612950 CTTGCATTGTGGGCAGTTGTA 59.387 47.619 0.00 0.00 43.05 2.41
2867 2971 0.390124 CTTGCATTGTGGGCAGTTGT 59.610 50.000 0.00 0.00 43.05 3.32
2868 2972 0.675083 TCTTGCATTGTGGGCAGTTG 59.325 50.000 0.00 0.00 43.05 3.16
2869 2973 0.963962 CTCTTGCATTGTGGGCAGTT 59.036 50.000 0.00 0.00 43.05 3.16
2870 2974 1.530013 GCTCTTGCATTGTGGGCAGT 61.530 55.000 0.00 0.00 43.05 4.40
2871 2975 1.214589 GCTCTTGCATTGTGGGCAG 59.785 57.895 0.00 0.00 43.05 4.85
2872 2976 1.531128 TGCTCTTGCATTGTGGGCA 60.531 52.632 0.00 0.00 45.31 5.36
2873 2977 3.368822 TGCTCTTGCATTGTGGGC 58.631 55.556 0.00 0.00 45.31 5.36
2882 2986 3.755378 CCATATTACAGGGATGCTCTTGC 59.245 47.826 0.00 0.00 40.20 4.01
2883 2987 3.755378 GCCATATTACAGGGATGCTCTTG 59.245 47.826 0.00 0.00 0.00 3.02
2884 2988 3.654806 AGCCATATTACAGGGATGCTCTT 59.345 43.478 0.00 0.00 0.00 2.85
2885 2989 3.254960 AGCCATATTACAGGGATGCTCT 58.745 45.455 0.00 0.00 0.00 4.09
2886 2990 3.262915 AGAGCCATATTACAGGGATGCTC 59.737 47.826 0.00 0.00 0.00 4.26
2887 2991 3.254960 AGAGCCATATTACAGGGATGCT 58.745 45.455 0.00 0.00 0.00 3.79
2888 2992 3.710209 AGAGCCATATTACAGGGATGC 57.290 47.619 0.00 0.00 0.00 3.91
2889 2993 4.202503 ACCAAGAGCCATATTACAGGGATG 60.203 45.833 0.00 0.00 0.00 3.51
2890 2994 3.983410 ACCAAGAGCCATATTACAGGGAT 59.017 43.478 0.00 0.00 0.00 3.85
2891 2995 3.391296 GACCAAGAGCCATATTACAGGGA 59.609 47.826 0.00 0.00 0.00 4.20
2892 2996 3.744660 GACCAAGAGCCATATTACAGGG 58.255 50.000 0.00 0.00 0.00 4.45
2893 2997 3.393800 CGACCAAGAGCCATATTACAGG 58.606 50.000 0.00 0.00 0.00 4.00
2894 2998 2.802816 GCGACCAAGAGCCATATTACAG 59.197 50.000 0.00 0.00 0.00 2.74
2895 2999 2.434336 AGCGACCAAGAGCCATATTACA 59.566 45.455 0.00 0.00 0.00 2.41
2896 3000 3.060602 GAGCGACCAAGAGCCATATTAC 58.939 50.000 0.00 0.00 0.00 1.89
2897 3001 2.965831 AGAGCGACCAAGAGCCATATTA 59.034 45.455 0.00 0.00 0.00 0.98
2898 3002 1.765314 AGAGCGACCAAGAGCCATATT 59.235 47.619 0.00 0.00 0.00 1.28
2899 3003 1.418334 AGAGCGACCAAGAGCCATAT 58.582 50.000 0.00 0.00 0.00 1.78
2900 3004 1.957177 CTAGAGCGACCAAGAGCCATA 59.043 52.381 0.00 0.00 0.00 2.74
2901 3005 0.749649 CTAGAGCGACCAAGAGCCAT 59.250 55.000 0.00 0.00 0.00 4.40
2902 3006 0.323451 TCTAGAGCGACCAAGAGCCA 60.323 55.000 0.00 0.00 0.00 4.75
2903 3007 0.383949 CTCTAGAGCGACCAAGAGCC 59.616 60.000 6.86 0.00 29.96 4.70
2904 3008 1.384525 TCTCTAGAGCGACCAAGAGC 58.615 55.000 15.35 0.00 36.29 4.09
2905 3009 3.380004 ACAATCTCTAGAGCGACCAAGAG 59.620 47.826 15.35 0.00 37.42 2.85
2906 3010 3.129462 CACAATCTCTAGAGCGACCAAGA 59.871 47.826 15.35 0.00 0.00 3.02
2907 3011 3.119316 ACACAATCTCTAGAGCGACCAAG 60.119 47.826 15.35 4.24 0.00 3.61
2908 3012 2.826128 ACACAATCTCTAGAGCGACCAA 59.174 45.455 15.35 0.00 0.00 3.67
2909 3013 2.423892 GACACAATCTCTAGAGCGACCA 59.576 50.000 15.35 0.00 0.00 4.02
2910 3014 2.223618 GGACACAATCTCTAGAGCGACC 60.224 54.545 15.35 7.37 0.00 4.79
2911 3015 2.685897 AGGACACAATCTCTAGAGCGAC 59.314 50.000 15.35 2.35 0.00 5.19
2912 3016 3.006112 AGGACACAATCTCTAGAGCGA 57.994 47.619 15.35 0.00 0.00 4.93
2913 3017 3.791973 AAGGACACAATCTCTAGAGCG 57.208 47.619 15.35 8.32 0.00 5.03
2914 3018 5.845391 AGTAAGGACACAATCTCTAGAGC 57.155 43.478 15.35 0.00 0.00 4.09
2915 3019 9.179909 TCTTAAGTAAGGACACAATCTCTAGAG 57.820 37.037 13.98 13.98 34.14 2.43
2916 3020 9.702253 ATCTTAAGTAAGGACACAATCTCTAGA 57.298 33.333 1.63 0.00 34.14 2.43
2917 3021 9.743057 CATCTTAAGTAAGGACACAATCTCTAG 57.257 37.037 1.63 0.00 34.14 2.43
2918 3022 8.696374 CCATCTTAAGTAAGGACACAATCTCTA 58.304 37.037 1.63 0.00 34.14 2.43
2919 3023 7.400339 TCCATCTTAAGTAAGGACACAATCTCT 59.600 37.037 1.63 0.00 34.14 3.10
2920 3024 7.556844 TCCATCTTAAGTAAGGACACAATCTC 58.443 38.462 1.63 0.00 34.14 2.75
2921 3025 7.496346 TCCATCTTAAGTAAGGACACAATCT 57.504 36.000 1.63 0.00 34.14 2.40
2922 3026 9.832445 TTATCCATCTTAAGTAAGGACACAATC 57.168 33.333 13.00 0.00 34.14 2.67
2923 3027 9.614792 GTTATCCATCTTAAGTAAGGACACAAT 57.385 33.333 13.00 3.53 34.14 2.71
2924 3028 8.044908 GGTTATCCATCTTAAGTAAGGACACAA 58.955 37.037 13.00 7.33 34.14 3.33
2925 3029 7.402071 AGGTTATCCATCTTAAGTAAGGACACA 59.598 37.037 13.00 3.04 35.89 3.72
2926 3030 7.793036 AGGTTATCCATCTTAAGTAAGGACAC 58.207 38.462 13.00 12.33 35.89 3.67
2927 3031 7.622081 TGAGGTTATCCATCTTAAGTAAGGACA 59.378 37.037 13.00 2.57 35.89 4.02
2928 3032 7.927092 GTGAGGTTATCCATCTTAAGTAAGGAC 59.073 40.741 13.00 4.76 35.89 3.85
2929 3033 7.622081 TGTGAGGTTATCCATCTTAAGTAAGGA 59.378 37.037 13.08 13.08 35.89 3.36
2930 3034 7.792032 TGTGAGGTTATCCATCTTAAGTAAGG 58.208 38.462 1.63 3.56 35.89 2.69
2931 3035 9.099454 GTTGTGAGGTTATCCATCTTAAGTAAG 57.901 37.037 1.63 0.00 35.89 2.34
2932 3036 8.598916 TGTTGTGAGGTTATCCATCTTAAGTAA 58.401 33.333 1.63 0.00 35.89 2.24
2933 3037 8.141298 TGTTGTGAGGTTATCCATCTTAAGTA 57.859 34.615 1.63 0.00 35.89 2.24
2934 3038 7.016153 TGTTGTGAGGTTATCCATCTTAAGT 57.984 36.000 1.63 0.00 35.89 2.24
2935 3039 8.400947 CAATGTTGTGAGGTTATCCATCTTAAG 58.599 37.037 0.00 0.00 35.89 1.85
2936 3040 7.888021 ACAATGTTGTGAGGTTATCCATCTTAA 59.112 33.333 0.00 0.00 40.49 1.85
2937 3041 7.402054 ACAATGTTGTGAGGTTATCCATCTTA 58.598 34.615 0.00 0.00 40.49 2.10
2938 3042 6.248433 ACAATGTTGTGAGGTTATCCATCTT 58.752 36.000 0.00 0.00 40.49 2.40
2939 3043 5.819991 ACAATGTTGTGAGGTTATCCATCT 58.180 37.500 0.00 0.00 40.49 2.90
2953 3057 7.138736 GCATCAAAGTTACTACACAATGTTGT 58.861 34.615 1.87 1.87 43.36 3.32
2954 3058 6.303022 CGCATCAAAGTTACTACACAATGTTG 59.697 38.462 0.00 0.00 0.00 3.33
2955 3059 6.370593 CGCATCAAAGTTACTACACAATGTT 58.629 36.000 0.00 0.00 0.00 2.71
2956 3060 5.106712 CCGCATCAAAGTTACTACACAATGT 60.107 40.000 0.00 0.00 0.00 2.71
2957 3061 5.121611 TCCGCATCAAAGTTACTACACAATG 59.878 40.000 0.00 0.00 0.00 2.82
2958 3062 5.242434 TCCGCATCAAAGTTACTACACAAT 58.758 37.500 0.00 0.00 0.00 2.71
2959 3063 4.633175 TCCGCATCAAAGTTACTACACAA 58.367 39.130 0.00 0.00 0.00 3.33
2960 3064 4.260139 TCCGCATCAAAGTTACTACACA 57.740 40.909 0.00 0.00 0.00 3.72
2961 3065 4.092968 CCTTCCGCATCAAAGTTACTACAC 59.907 45.833 0.00 0.00 0.00 2.90
2962 3066 4.250464 CCTTCCGCATCAAAGTTACTACA 58.750 43.478 0.00 0.00 0.00 2.74
2963 3067 4.092968 CACCTTCCGCATCAAAGTTACTAC 59.907 45.833 0.00 0.00 0.00 2.73
2964 3068 4.250464 CACCTTCCGCATCAAAGTTACTA 58.750 43.478 0.00 0.00 0.00 1.82
2965 3069 3.074412 CACCTTCCGCATCAAAGTTACT 58.926 45.455 0.00 0.00 0.00 2.24
2966 3070 2.161609 CCACCTTCCGCATCAAAGTTAC 59.838 50.000 0.00 0.00 0.00 2.50
2967 3071 2.039216 TCCACCTTCCGCATCAAAGTTA 59.961 45.455 0.00 0.00 0.00 2.24
2968 3072 1.202879 TCCACCTTCCGCATCAAAGTT 60.203 47.619 0.00 0.00 0.00 2.66
2969 3073 0.400213 TCCACCTTCCGCATCAAAGT 59.600 50.000 0.00 0.00 0.00 2.66
2970 3074 1.089920 CTCCACCTTCCGCATCAAAG 58.910 55.000 0.00 0.00 0.00 2.77
2971 3075 0.322456 CCTCCACCTTCCGCATCAAA 60.322 55.000 0.00 0.00 0.00 2.69
2972 3076 1.198094 TCCTCCACCTTCCGCATCAA 61.198 55.000 0.00 0.00 0.00 2.57
2973 3077 0.982852 ATCCTCCACCTTCCGCATCA 60.983 55.000 0.00 0.00 0.00 3.07
2974 3078 0.533755 CATCCTCCACCTTCCGCATC 60.534 60.000 0.00 0.00 0.00 3.91
2975 3079 0.982852 TCATCCTCCACCTTCCGCAT 60.983 55.000 0.00 0.00 0.00 4.73
2976 3080 1.612146 TCATCCTCCACCTTCCGCA 60.612 57.895 0.00 0.00 0.00 5.69
2977 3081 1.144936 CTCATCCTCCACCTTCCGC 59.855 63.158 0.00 0.00 0.00 5.54
2978 3082 1.144936 GCTCATCCTCCACCTTCCG 59.855 63.158 0.00 0.00 0.00 4.30
2979 3083 0.985490 AGGCTCATCCTCCACCTTCC 60.985 60.000 0.00 0.00 43.20 3.46
2980 3084 2.614001 AGGCTCATCCTCCACCTTC 58.386 57.895 0.00 0.00 43.20 3.46
2981 3085 4.928981 AGGCTCATCCTCCACCTT 57.071 55.556 0.00 0.00 43.20 3.50
2989 3093 3.137533 GCTAAACATCTGAGGCTCATCC 58.862 50.000 19.11 0.00 0.00 3.51
2990 3094 3.808726 CAGCTAAACATCTGAGGCTCATC 59.191 47.826 19.11 0.00 0.00 2.92
2991 3095 3.199508 ACAGCTAAACATCTGAGGCTCAT 59.800 43.478 19.11 4.32 0.00 2.90
2992 3096 2.568956 ACAGCTAAACATCTGAGGCTCA 59.431 45.455 17.68 17.68 0.00 4.26
2993 3097 3.258971 ACAGCTAAACATCTGAGGCTC 57.741 47.619 7.79 7.79 0.00 4.70
3009 3113 6.892310 ACATTTCAAGTTCTTTCAAACAGC 57.108 33.333 0.00 0.00 0.00 4.40
3033 3137 0.957395 CTTGCATCTTGGGCAGTCGT 60.957 55.000 0.00 0.00 43.05 4.34
3073 3177 2.092968 CACAATCTCCAGGGATTCCGAA 60.093 50.000 0.00 0.00 38.33 4.30
3082 3186 3.515502 TCTGTAAGGACACAATCTCCAGG 59.484 47.826 0.00 0.00 0.00 4.45
3092 3196 6.049790 GGTTATCCATCTTCTGTAAGGACAC 58.950 44.000 0.00 0.00 33.22 3.67
3118 3480 4.676471 TCAAAGTTACTACACAACGCTACG 59.324 41.667 0.00 0.00 0.00 3.51
3124 3486 6.854496 TCCACATCAAAGTTACTACACAAC 57.146 37.500 0.00 0.00 0.00 3.32
3127 3489 5.995897 ACCTTCCACATCAAAGTTACTACAC 59.004 40.000 0.00 0.00 0.00 2.90
3137 3499 2.061848 TCCTCCACCTTCCACATCAAA 58.938 47.619 0.00 0.00 0.00 2.69
3211 3573 4.566004 TCGATGTCTCCAGGTTTGTTAAG 58.434 43.478 0.00 0.00 0.00 1.85
3215 3577 4.023980 TCTATCGATGTCTCCAGGTTTGT 58.976 43.478 8.54 0.00 0.00 2.83
3219 3581 5.878406 ATTTTCTATCGATGTCTCCAGGT 57.122 39.130 8.54 0.00 0.00 4.00
3228 3590 6.749139 TCTCCCACACTATTTTCTATCGATG 58.251 40.000 8.54 0.00 0.00 3.84
3231 3593 4.985409 GCTCTCCCACACTATTTTCTATCG 59.015 45.833 0.00 0.00 0.00 2.92
3233 3595 4.971924 AGGCTCTCCCACACTATTTTCTAT 59.028 41.667 0.00 0.00 35.39 1.98
3303 3665 3.703420 CTTGCAAGCTTCAGGCAATATC 58.297 45.455 19.41 0.00 45.43 1.63
3325 3687 1.340017 ACAACGGGGATCACTGGAATG 60.340 52.381 9.06 6.83 0.00 2.67
3383 3745 6.610075 AATGCCCATAAAAGTTGAAGTGAT 57.390 33.333 0.00 0.00 0.00 3.06
3387 3749 7.331687 CCAAACTAATGCCCATAAAAGTTGAAG 59.668 37.037 0.00 0.00 0.00 3.02
3393 3755 4.162131 AGCCCAAACTAATGCCCATAAAAG 59.838 41.667 0.00 0.00 0.00 2.27
3406 3768 3.806949 AATGGACAAGAGCCCAAACTA 57.193 42.857 0.00 0.00 35.85 2.24
3407 3769 2.629617 CAAATGGACAAGAGCCCAAACT 59.370 45.455 0.00 0.00 35.85 2.66
3428 3793 6.569780 ACCCAAGAATTAATAATTTGGCGAC 58.430 36.000 15.17 0.00 30.68 5.19
3436 3801 7.350921 TCTCCTGGAGACCCAAGAATTAATAAT 59.649 37.037 22.30 0.00 42.98 1.28
3437 3802 6.676632 TCTCCTGGAGACCCAAGAATTAATAA 59.323 38.462 22.30 0.00 42.98 1.40
3438 3803 6.209774 TCTCCTGGAGACCCAAGAATTAATA 58.790 40.000 22.30 0.00 42.98 0.98
3439 3804 5.039645 TCTCCTGGAGACCCAAGAATTAAT 58.960 41.667 22.30 0.00 42.98 1.40
3525 3890 0.673985 CCCTTCGAGAGTCACACACA 59.326 55.000 0.00 0.00 0.00 3.72
3530 3895 1.827399 TTGGGCCCTTCGAGAGTCAC 61.827 60.000 25.70 0.00 0.00 3.67
3538 3903 0.107214 TCAAGCTATTGGGCCCTTCG 60.107 55.000 25.70 9.96 37.02 3.79
3557 3922 1.408822 GGACAATCCGGAGCTTCCAAT 60.409 52.381 18.75 0.00 35.91 3.16
3559 3924 1.198094 TGGACAATCCGGAGCTTCCA 61.198 55.000 21.30 21.30 40.17 3.53
3560 3925 0.462759 CTGGACAATCCGGAGCTTCC 60.463 60.000 11.34 15.17 45.95 3.46
3590 3955 4.830826 ACGAAAATCTTTTCCAGACCAC 57.169 40.909 9.24 0.00 42.66 4.16
3595 3960 4.844267 ACACGAACGAAAATCTTTTCCAG 58.156 39.130 9.24 0.77 42.66 3.86
3604 3969 7.786114 TCGTTAGATTTTACACGAACGAAAAT 58.214 30.769 11.26 3.39 45.25 1.82
3617 3982 7.471657 TGCAATCGCTAATCGTTAGATTTTA 57.528 32.000 8.39 0.00 40.62 1.52
3625 3990 3.822594 TTGTTGCAATCGCTAATCGTT 57.177 38.095 0.59 0.00 39.64 3.85
3714 4079 3.203487 ACTGTTCCCCTCCAAGTTGTTAA 59.797 43.478 1.45 0.00 0.00 2.01
3716 4081 1.569072 ACTGTTCCCCTCCAAGTTGTT 59.431 47.619 1.45 0.00 0.00 2.83
3722 4087 0.476771 GGTGAACTGTTCCCCTCCAA 59.523 55.000 17.26 0.00 0.00 3.53
3735 4100 2.801111 GTTTTCTCCTCAGACGGTGAAC 59.199 50.000 0.00 0.00 36.57 3.18
3752 4117 4.119155 TCCAGGGATAGATGAAGGGTTTT 58.881 43.478 0.00 0.00 0.00 2.43
3762 4127 2.703007 GTCAAGTGCTCCAGGGATAGAT 59.297 50.000 0.00 0.00 0.00 1.98
3766 4131 0.904865 TCGTCAAGTGCTCCAGGGAT 60.905 55.000 0.00 0.00 0.00 3.85
3776 4141 4.731961 GCTGCAATATGAAATCGTCAAGTG 59.268 41.667 0.00 0.00 40.50 3.16
3778 4143 4.912214 TGCTGCAATATGAAATCGTCAAG 58.088 39.130 0.00 0.00 40.50 3.02
3826 4191 1.130054 TCAGCTTGGCCAGACTTCCT 61.130 55.000 5.11 0.00 0.00 3.36
3831 4196 2.029844 GTCGTCAGCTTGGCCAGAC 61.030 63.158 5.11 9.31 33.02 3.51
3849 4214 5.461078 CCATTGCAGTCAAACAAAAAGAGAG 59.539 40.000 0.00 0.00 35.56 3.20
3915 4280 8.293699 ACAATACCAAATCTTCAATTCCCTAC 57.706 34.615 0.00 0.00 0.00 3.18
3942 4307 6.651086 ACCCTTTTTCCACTAGTTATAGCTC 58.349 40.000 0.00 0.00 31.66 4.09
3949 4314 5.897250 ACATTTGACCCTTTTTCCACTAGTT 59.103 36.000 0.00 0.00 0.00 2.24
3950 4315 5.301805 CACATTTGACCCTTTTTCCACTAGT 59.698 40.000 0.00 0.00 0.00 2.57
3951 4316 5.534654 TCACATTTGACCCTTTTTCCACTAG 59.465 40.000 0.00 0.00 0.00 2.57
3952 4317 5.450453 TCACATTTGACCCTTTTTCCACTA 58.550 37.500 0.00 0.00 0.00 2.74
3953 4318 4.285863 TCACATTTGACCCTTTTTCCACT 58.714 39.130 0.00 0.00 0.00 4.00
3954 4319 4.664150 TCACATTTGACCCTTTTTCCAC 57.336 40.909 0.00 0.00 0.00 4.02
3955 4320 4.442753 GCTTCACATTTGACCCTTTTTCCA 60.443 41.667 0.00 0.00 0.00 3.53
3956 4321 4.058124 GCTTCACATTTGACCCTTTTTCC 58.942 43.478 0.00 0.00 0.00 3.13
3957 4322 4.507756 GTGCTTCACATTTGACCCTTTTTC 59.492 41.667 0.00 0.00 34.08 2.29
3958 4323 4.081198 TGTGCTTCACATTTGACCCTTTTT 60.081 37.500 0.00 0.00 39.62 1.94
3959 4324 3.450457 TGTGCTTCACATTTGACCCTTTT 59.550 39.130 0.00 0.00 39.62 2.27
3960 4325 3.030291 TGTGCTTCACATTTGACCCTTT 58.970 40.909 0.00 0.00 39.62 3.11
3961 4326 2.665165 TGTGCTTCACATTTGACCCTT 58.335 42.857 0.00 0.00 39.62 3.95
3962 4327 2.363306 TGTGCTTCACATTTGACCCT 57.637 45.000 0.00 0.00 39.62 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.