Multiple sequence alignment - TraesCS4A01G471500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G471500 chr4A 100.000 3383 0 0 1 3383 732003255 732006637 0.000000e+00 6248.0
1 TraesCS4A01G471500 chr4A 80.352 1364 206 32 1044 2382 709998743 709997417 0.000000e+00 977.0
2 TraesCS4A01G471500 chr4A 76.562 192 38 4 2667 2857 595272328 595272513 7.730000e-17 99.0
3 TraesCS4A01G471500 chr4A 85.507 69 9 1 3316 3383 13533498 13533566 1.680000e-08 71.3
4 TraesCS4A01G471500 chr7D 91.206 1865 100 23 709 2552 7536648 7534827 0.000000e+00 2477.0
5 TraesCS4A01G471500 chr7D 92.672 696 19 6 7 700 2579857 2579192 0.000000e+00 974.0
6 TraesCS4A01G471500 chr7D 89.720 428 27 10 2128 2550 7530140 7530555 6.430000e-147 531.0
7 TraesCS4A01G471500 chr7D 80.894 492 88 5 2776 3264 558165265 558165753 1.900000e-102 383.0
8 TraesCS4A01G471500 chr7D 97.368 38 1 0 3320 3357 72450447 72450484 7.840000e-07 65.8
9 TraesCS4A01G471500 chr7A 91.524 1581 102 13 981 2552 8548627 8550184 0.000000e+00 2148.0
10 TraesCS4A01G471500 chr7A 90.962 1029 75 6 980 1997 8584184 8583163 0.000000e+00 1369.0
11 TraesCS4A01G471500 chr7A 80.117 1373 211 31 1044 2382 26573647 26572303 0.000000e+00 966.0
12 TraesCS4A01G471500 chr7A 80.897 602 99 9 2667 3264 718520775 718521364 8.550000e-126 460.0
13 TraesCS4A01G471500 chr7A 80.565 602 101 9 2667 3264 718525679 718526268 1.850000e-122 449.0
14 TraesCS4A01G471500 chr7A 88.119 101 5 3 709 809 8501356 8501449 2.760000e-21 113.0
15 TraesCS4A01G471500 chr2D 92.461 703 22 5 1 700 592584958 592585632 0.000000e+00 976.0
16 TraesCS4A01G471500 chr2D 90.909 77 7 0 2667 2743 390723174 390723098 1.660000e-18 104.0
17 TraesCS4A01G471500 chr2D 90.323 62 5 1 3316 3376 601015218 601015279 2.800000e-11 80.5
18 TraesCS4A01G471500 chr2D 83.824 68 7 2 3317 3383 471705210 471705146 1.010000e-05 62.1
19 TraesCS4A01G471500 chr4B 92.407 698 23 5 7 701 668984212 668983542 0.000000e+00 968.0
20 TraesCS4A01G471500 chr4B 92.045 704 26 5 1 701 669149853 669150529 0.000000e+00 963.0
21 TraesCS4A01G471500 chr4B 91.761 704 28 5 1 701 669319834 669320510 0.000000e+00 952.0
22 TraesCS4A01G471500 chr4D 92.165 702 24 5 1 699 216325938 216326611 0.000000e+00 963.0
23 TraesCS4A01G471500 chr1B 91.977 698 26 4 7 703 13902121 13901453 0.000000e+00 952.0
24 TraesCS4A01G471500 chr1B 91.655 707 28 11 7 711 507361131 507360454 0.000000e+00 950.0
25 TraesCS4A01G471500 chr1B 81.894 602 99 10 2667 3264 679036405 679035810 1.810000e-137 499.0
26 TraesCS4A01G471500 chr1B 85.965 57 5 3 3305 3360 20865975 20865921 1.310000e-04 58.4
27 TraesCS4A01G471500 chr1D 91.679 697 27 5 7 700 116457124 116456456 0.000000e+00 937.0
28 TraesCS4A01G471500 chr6B 90.661 696 34 5 7 700 31070248 31069582 0.000000e+00 896.0
29 TraesCS4A01G471500 chr7B 97.317 410 8 2 1 409 2320020 2320427 0.000000e+00 693.0
30 TraesCS4A01G471500 chr5B 96.172 418 13 2 1 417 549729341 549729756 0.000000e+00 680.0
31 TraesCS4A01G471500 chr5B 79.436 603 115 9 2667 3264 72077725 72078323 5.220000e-113 418.0
32 TraesCS4A01G471500 chr3D 96.359 412 13 2 7 417 390096610 390096200 0.000000e+00 676.0
33 TraesCS4A01G471500 chr3D 81.897 464 77 5 2784 3242 121797451 121796990 5.300000e-103 385.0
34 TraesCS4A01G471500 chr3D 81.681 464 78 5 2784 3242 121875848 121875387 2.460000e-101 379.0
35 TraesCS4A01G471500 chr5A 90.341 528 18 7 175 700 112122231 112121735 0.000000e+00 662.0
36 TraesCS4A01G471500 chr5A 92.857 70 4 1 3315 3383 703412125 703412194 2.150000e-17 100.0
37 TraesCS4A01G471500 chr5D 81.032 601 110 4 2667 3264 487270714 487270115 3.050000e-130 475.0
38 TraesCS4A01G471500 chr5D 83.501 497 76 6 2772 3264 456591355 456590861 3.080000e-125 459.0
39 TraesCS4A01G471500 chr1A 87.143 70 6 3 3316 3383 583844794 583844862 3.620000e-10 76.8
40 TraesCS4A01G471500 chr3B 84.507 71 8 3 3315 3383 465070602 465070533 2.180000e-07 67.6
41 TraesCS4A01G471500 chr6A 87.719 57 6 1 3316 3371 559340064 559340120 7.840000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G471500 chr4A 732003255 732006637 3382 False 6248 6248 100.000 1 3383 1 chr4A.!!$F3 3382
1 TraesCS4A01G471500 chr4A 709997417 709998743 1326 True 977 977 80.352 1044 2382 1 chr4A.!!$R1 1338
2 TraesCS4A01G471500 chr7D 7534827 7536648 1821 True 2477 2477 91.206 709 2552 1 chr7D.!!$R2 1843
3 TraesCS4A01G471500 chr7D 2579192 2579857 665 True 974 974 92.672 7 700 1 chr7D.!!$R1 693
4 TraesCS4A01G471500 chr7A 8548627 8550184 1557 False 2148 2148 91.524 981 2552 1 chr7A.!!$F2 1571
5 TraesCS4A01G471500 chr7A 8583163 8584184 1021 True 1369 1369 90.962 980 1997 1 chr7A.!!$R1 1017
6 TraesCS4A01G471500 chr7A 26572303 26573647 1344 True 966 966 80.117 1044 2382 1 chr7A.!!$R2 1338
7 TraesCS4A01G471500 chr7A 718520775 718521364 589 False 460 460 80.897 2667 3264 1 chr7A.!!$F3 597
8 TraesCS4A01G471500 chr7A 718525679 718526268 589 False 449 449 80.565 2667 3264 1 chr7A.!!$F4 597
9 TraesCS4A01G471500 chr2D 592584958 592585632 674 False 976 976 92.461 1 700 1 chr2D.!!$F1 699
10 TraesCS4A01G471500 chr4B 668983542 668984212 670 True 968 968 92.407 7 701 1 chr4B.!!$R1 694
11 TraesCS4A01G471500 chr4B 669149853 669150529 676 False 963 963 92.045 1 701 1 chr4B.!!$F1 700
12 TraesCS4A01G471500 chr4B 669319834 669320510 676 False 952 952 91.761 1 701 1 chr4B.!!$F2 700
13 TraesCS4A01G471500 chr4D 216325938 216326611 673 False 963 963 92.165 1 699 1 chr4D.!!$F1 698
14 TraesCS4A01G471500 chr1B 13901453 13902121 668 True 952 952 91.977 7 703 1 chr1B.!!$R1 696
15 TraesCS4A01G471500 chr1B 507360454 507361131 677 True 950 950 91.655 7 711 1 chr1B.!!$R3 704
16 TraesCS4A01G471500 chr1B 679035810 679036405 595 True 499 499 81.894 2667 3264 1 chr1B.!!$R4 597
17 TraesCS4A01G471500 chr1D 116456456 116457124 668 True 937 937 91.679 7 700 1 chr1D.!!$R1 693
18 TraesCS4A01G471500 chr6B 31069582 31070248 666 True 896 896 90.661 7 700 1 chr6B.!!$R1 693
19 TraesCS4A01G471500 chr5B 72077725 72078323 598 False 418 418 79.436 2667 3264 1 chr5B.!!$F1 597
20 TraesCS4A01G471500 chr5D 487270115 487270714 599 True 475 475 81.032 2667 3264 1 chr5D.!!$R2 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 983 0.025641 CGCGCGTGTATATTGCAACA 59.974 50.0 24.19 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2609 2689 0.331278 ACCGGCCCAGATGAAATTGA 59.669 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
248 249 1.402259 GACGATGTCACTCACTCCGAT 59.598 52.381 0.00 0.00 32.09 4.18
279 283 3.181536 GCATCTACTCGCATTTAGCATCG 60.182 47.826 0.00 0.00 46.13 3.84
402 407 9.474920 CTTTTTATTGACAAAGCTTTATGGTGA 57.525 29.630 12.25 0.00 0.00 4.02
403 408 9.823647 TTTTTATTGACAAAGCTTTATGGTGAA 57.176 25.926 12.25 6.93 0.00 3.18
404 409 8.810652 TTTATTGACAAAGCTTTATGGTGAAC 57.189 30.769 12.25 1.46 0.00 3.18
405 410 4.846779 TGACAAAGCTTTATGGTGAACC 57.153 40.909 12.25 0.00 0.00 3.62
418 423 2.622942 TGGTGAACCAGATTGACAAAGC 59.377 45.455 0.00 0.00 42.01 3.51
419 424 2.887152 GGTGAACCAGATTGACAAAGCT 59.113 45.455 0.00 0.00 35.64 3.74
420 425 3.319122 GGTGAACCAGATTGACAAAGCTT 59.681 43.478 0.00 0.00 35.64 3.74
421 426 4.202151 GGTGAACCAGATTGACAAAGCTTT 60.202 41.667 5.69 5.69 35.64 3.51
422 427 5.009610 GGTGAACCAGATTGACAAAGCTTTA 59.990 40.000 12.25 0.00 35.64 1.85
423 428 6.294731 GGTGAACCAGATTGACAAAGCTTTAT 60.295 38.462 12.25 0.00 35.64 1.40
424 429 6.583806 GTGAACCAGATTGACAAAGCTTTATG 59.416 38.462 12.25 3.72 26.61 1.90
425 430 5.649782 ACCAGATTGACAAAGCTTTATGG 57.350 39.130 12.25 8.51 26.61 2.74
426 431 5.079643 ACCAGATTGACAAAGCTTTATGGT 58.920 37.500 12.25 9.19 26.61 3.55
427 432 5.047802 ACCAGATTGACAAAGCTTTATGGTG 60.048 40.000 12.25 2.07 26.89 4.17
484 489 9.880064 CAATCAGAAGAGATGCATACAAATAAG 57.120 33.333 0.00 0.00 0.00 1.73
529 534 8.620416 TGTGCATGATAATACAAAAGGTATGTC 58.380 33.333 0.00 0.00 41.87 3.06
601 606 4.593157 TGTCAACGTTCAAAAAGAATCCG 58.407 39.130 0.00 0.00 38.76 4.18
611 616 3.396260 AAAAGAATCCGTCGACAAGGA 57.604 42.857 17.16 15.21 41.30 3.36
703 713 3.713288 GCACGGCATTGTACTAGTATCA 58.287 45.455 5.75 3.68 0.00 2.15
706 716 5.348986 CACGGCATTGTACTAGTATCAGTT 58.651 41.667 5.75 0.00 0.00 3.16
719 729 0.511221 ATCAGTTGTACGTGCGTTGC 59.489 50.000 1.66 0.00 0.00 4.17
760 773 4.502962 CTGGTCTCATGTCTTCTTCCTTC 58.497 47.826 0.00 0.00 0.00 3.46
761 774 3.261897 TGGTCTCATGTCTTCTTCCTTCC 59.738 47.826 0.00 0.00 0.00 3.46
762 775 3.261897 GGTCTCATGTCTTCTTCCTTCCA 59.738 47.826 0.00 0.00 0.00 3.53
763 776 4.080638 GGTCTCATGTCTTCTTCCTTCCAT 60.081 45.833 0.00 0.00 0.00 3.41
764 777 5.495640 GTCTCATGTCTTCTTCCTTCCATT 58.504 41.667 0.00 0.00 0.00 3.16
784 797 2.281070 CGGATGATTGGAGGCCGG 60.281 66.667 0.00 0.00 38.40 6.13
785 798 2.807107 CGGATGATTGGAGGCCGGA 61.807 63.158 5.05 0.00 38.40 5.14
795 808 3.655810 GAGGCCGGAGCAGTCACAG 62.656 68.421 5.05 0.00 42.56 3.66
837 850 1.901650 CTTCGTCGCTGTCAAAGGCC 61.902 60.000 0.00 0.00 0.00 5.19
838 851 2.652382 TTCGTCGCTGTCAAAGGCCA 62.652 55.000 5.01 0.00 0.00 5.36
841 854 3.058160 CGCTGTCAAAGGCCAGGG 61.058 66.667 5.01 0.00 35.67 4.45
842 855 3.376918 GCTGTCAAAGGCCAGGGC 61.377 66.667 5.01 4.33 41.06 5.19
843 856 2.437897 CTGTCAAAGGCCAGGGCT 59.562 61.111 10.54 10.54 41.24 5.19
844 857 1.676967 CTGTCAAAGGCCAGGGCTC 60.677 63.158 17.67 4.04 37.50 4.70
845 858 2.416107 CTGTCAAAGGCCAGGGCTCA 62.416 60.000 17.67 9.00 37.50 4.26
846 859 1.000396 GTCAAAGGCCAGGGCTCAT 60.000 57.895 17.67 5.66 37.50 2.90
847 860 1.034292 GTCAAAGGCCAGGGCTCATC 61.034 60.000 17.67 3.94 37.50 2.92
848 861 1.210204 TCAAAGGCCAGGGCTCATCT 61.210 55.000 17.67 0.00 37.50 2.90
849 862 0.324091 CAAAGGCCAGGGCTCATCTT 60.324 55.000 17.67 3.63 37.50 2.40
850 863 0.324091 AAAGGCCAGGGCTCATCTTG 60.324 55.000 17.67 0.00 37.50 3.02
851 864 1.504275 AAGGCCAGGGCTCATCTTGT 61.504 55.000 17.67 0.00 37.50 3.16
852 865 1.751927 GGCCAGGGCTCATCTTGTG 60.752 63.158 10.60 0.00 41.60 3.33
853 866 2.413142 GCCAGGGCTCATCTTGTGC 61.413 63.158 2.30 0.00 38.26 4.57
854 867 1.302285 CCAGGGCTCATCTTGTGCT 59.698 57.895 0.00 0.00 37.09 4.40
855 868 0.747283 CCAGGGCTCATCTTGTGCTC 60.747 60.000 0.00 0.00 37.60 4.26
873 886 1.153628 CCTTCTCGCGGTACCCTTG 60.154 63.158 6.13 0.00 0.00 3.61
874 887 1.810030 CTTCTCGCGGTACCCTTGC 60.810 63.158 6.13 2.98 0.00 4.01
878 891 2.125991 CGCGGTACCCTTGCGTTA 60.126 61.111 20.48 0.00 46.29 3.18
880 893 1.085501 CGCGGTACCCTTGCGTTAAT 61.086 55.000 20.48 0.00 46.29 1.40
881 894 0.375803 GCGGTACCCTTGCGTTAATG 59.624 55.000 6.25 0.00 0.00 1.90
883 896 0.736636 GGTACCCTTGCGTTAATGGC 59.263 55.000 0.00 0.00 0.00 4.40
888 907 1.102154 CCTTGCGTTAATGGCATCCA 58.898 50.000 0.00 0.00 40.62 3.41
895 914 1.134175 GTTAATGGCATCCAACCACCG 59.866 52.381 0.00 0.00 40.82 4.94
899 918 2.340328 GGCATCCAACCACCGGTTC 61.340 63.158 2.97 0.00 43.05 3.62
904 923 0.250989 TCCAACCACCGGTTCATTCC 60.251 55.000 2.97 0.00 43.05 3.01
921 940 1.979809 TCCCAGCCAATCCTTCCTAA 58.020 50.000 0.00 0.00 0.00 2.69
947 968 0.575390 ATGTTTATCAGTACGCGCGC 59.425 50.000 32.58 23.91 0.00 6.86
960 981 1.011684 GCGCGCGTGTATATTGCAA 60.012 52.632 32.35 0.00 0.00 4.08
962 983 0.025641 CGCGCGTGTATATTGCAACA 59.974 50.000 24.19 0.00 0.00 3.33
963 984 1.452717 GCGCGTGTATATTGCAACAC 58.547 50.000 8.43 5.16 42.04 3.32
968 989 4.026062 CGCGTGTATATTGCAACACATACT 60.026 41.667 17.17 0.00 44.98 2.12
969 990 5.174216 CGCGTGTATATTGCAACACATACTA 59.826 40.000 17.17 0.00 44.98 1.82
970 991 6.581370 GCGTGTATATTGCAACACATACTAG 58.419 40.000 17.17 14.55 44.98 2.57
971 992 6.581370 CGTGTATATTGCAACACATACTAGC 58.419 40.000 17.17 11.07 44.98 3.42
972 993 6.420903 CGTGTATATTGCAACACATACTAGCT 59.579 38.462 17.17 0.00 44.98 3.32
973 994 7.593644 CGTGTATATTGCAACACATACTAGCTA 59.406 37.037 17.17 0.00 44.98 3.32
974 995 8.916654 GTGTATATTGCAACACATACTAGCTAG 58.083 37.037 19.44 19.44 44.30 3.42
975 996 7.598869 TGTATATTGCAACACATACTAGCTAGC 59.401 37.037 20.91 6.62 0.00 3.42
976 997 4.471904 TTGCAACACATACTAGCTAGCT 57.528 40.909 23.12 23.12 0.00 3.32
977 998 5.592104 TTGCAACACATACTAGCTAGCTA 57.408 39.130 22.85 22.85 0.00 3.32
1077 1098 2.675348 GCTAGCTTGGCTACTTGTTCTG 59.325 50.000 7.70 0.00 40.44 3.02
1173 1206 1.296715 CACAAAGCCGCCTAGGTCT 59.703 57.895 11.31 2.54 43.70 3.85
1383 1431 4.101448 GTCAGGGTCCCATGCGCT 62.101 66.667 11.55 0.00 0.00 5.92
1426 1480 2.107343 CCAACGACACCACCGACA 59.893 61.111 0.00 0.00 0.00 4.35
1468 1537 1.433879 GACGATCGCTGCAGGTACT 59.566 57.895 16.60 0.00 43.88 2.73
1482 1551 3.002791 CAGGTACTTCTACGTGTACGGA 58.997 50.000 9.40 0.00 39.99 4.69
1644 1713 0.552615 ACAGGGGGCCACTATCCTTT 60.553 55.000 8.68 0.00 0.00 3.11
1658 1727 0.179059 TCCTTTGTGTCGCAGCTCAA 60.179 50.000 0.00 0.00 0.00 3.02
1722 1791 1.521010 CTCCGACTCCGAGAGCGTA 60.521 63.158 1.33 0.00 38.22 4.42
1885 1954 1.603739 GCTGGGGCTTTCGACCTTT 60.604 57.895 0.00 0.00 38.87 3.11
1890 1959 2.474712 GCTTTCGACCTTTCCGCG 59.525 61.111 0.00 0.00 0.00 6.46
2136 2209 3.050275 GCCACGTTGGAGCTCACC 61.050 66.667 17.19 0.00 40.96 4.02
2148 2221 1.079127 GCTCACCACGGTGCACTAT 60.079 57.895 17.98 1.72 45.04 2.12
2247 2320 2.036256 GGAACCATGGTGCAGGCT 59.964 61.111 24.87 4.48 0.00 4.58
2368 2444 0.463620 TTTGTTCCTTGCTTGGGTGC 59.536 50.000 0.00 0.00 0.00 5.01
2369 2445 0.396974 TTGTTCCTTGCTTGGGTGCT 60.397 50.000 0.00 0.00 0.00 4.40
2370 2446 1.108727 TGTTCCTTGCTTGGGTGCTG 61.109 55.000 0.00 0.00 0.00 4.41
2386 2462 3.243267 GGTGCTGCTACTCTTCTAGCTAC 60.243 52.174 0.00 0.00 40.02 3.58
2387 2463 2.952978 TGCTGCTACTCTTCTAGCTACC 59.047 50.000 0.00 0.00 40.02 3.18
2388 2464 3.219281 GCTGCTACTCTTCTAGCTACCT 58.781 50.000 0.00 0.00 40.02 3.08
2389 2465 4.141459 TGCTGCTACTCTTCTAGCTACCTA 60.141 45.833 0.00 0.00 40.02 3.08
2402 2478 7.509236 TCTAGCTACCTAGATGATCATCTCT 57.491 40.000 35.70 26.92 44.37 3.10
2425 2501 3.297830 TCGTGTGTACTGTTCCATCTG 57.702 47.619 0.00 0.00 0.00 2.90
2428 2504 2.996621 GTGTGTACTGTTCCATCTGCTC 59.003 50.000 0.00 0.00 0.00 4.26
2433 2509 1.339438 ACTGTTCCATCTGCTCGCATT 60.339 47.619 0.00 0.00 0.00 3.56
2443 2519 0.597118 TGCTCGCATTGTTTTGCCAC 60.597 50.000 0.00 0.00 39.52 5.01
2454 2530 7.148672 CGCATTGTTTTGCCACAAGAAATATTA 60.149 33.333 0.00 0.00 40.01 0.98
2455 2531 8.502387 GCATTGTTTTGCCACAAGAAATATTAA 58.498 29.630 0.00 0.00 40.01 1.40
2458 2534 9.995003 TTGTTTTGCCACAAGAAATATTAATCT 57.005 25.926 0.00 0.00 32.70 2.40
2459 2535 9.638239 TGTTTTGCCACAAGAAATATTAATCTC 57.362 29.630 0.00 0.00 0.00 2.75
2460 2536 9.638239 GTTTTGCCACAAGAAATATTAATCTCA 57.362 29.630 0.00 0.00 0.00 3.27
2461 2537 9.859427 TTTTGCCACAAGAAATATTAATCTCAG 57.141 29.630 0.00 0.00 0.00 3.35
2462 2538 8.806429 TTGCCACAAGAAATATTAATCTCAGA 57.194 30.769 0.00 0.00 0.00 3.27
2463 2539 8.806429 TGCCACAAGAAATATTAATCTCAGAA 57.194 30.769 0.00 0.00 0.00 3.02
2464 2540 9.412460 TGCCACAAGAAATATTAATCTCAGAAT 57.588 29.630 0.00 0.00 0.00 2.40
2479 2555 6.114187 TCTCAGAATTGTGGTGTGTATTCT 57.886 37.500 2.33 0.00 37.72 2.40
2492 2568 9.758651 GTGGTGTGTATTCTATATGTCATGTAA 57.241 33.333 0.00 0.00 0.00 2.41
2494 2570 9.982651 GGTGTGTATTCTATATGTCATGTAACT 57.017 33.333 0.00 0.00 0.00 2.24
2562 2642 5.576447 TTATTCTCCCTTCCGAAAAATGC 57.424 39.130 0.00 0.00 0.00 3.56
2563 2643 2.879103 TCTCCCTTCCGAAAAATGCT 57.121 45.000 0.00 0.00 0.00 3.79
2564 2644 2.711542 TCTCCCTTCCGAAAAATGCTC 58.288 47.619 0.00 0.00 0.00 4.26
2565 2645 2.305927 TCTCCCTTCCGAAAAATGCTCT 59.694 45.455 0.00 0.00 0.00 4.09
2566 2646 3.517901 TCTCCCTTCCGAAAAATGCTCTA 59.482 43.478 0.00 0.00 0.00 2.43
2567 2647 3.606687 TCCCTTCCGAAAAATGCTCTAC 58.393 45.455 0.00 0.00 0.00 2.59
2568 2648 3.008594 TCCCTTCCGAAAAATGCTCTACA 59.991 43.478 0.00 0.00 0.00 2.74
2569 2649 3.375299 CCCTTCCGAAAAATGCTCTACAG 59.625 47.826 0.00 0.00 0.00 2.74
2570 2650 3.375299 CCTTCCGAAAAATGCTCTACAGG 59.625 47.826 0.00 0.00 0.00 4.00
2571 2651 3.695830 TCCGAAAAATGCTCTACAGGT 57.304 42.857 0.00 0.00 0.00 4.00
2572 2652 4.811969 TCCGAAAAATGCTCTACAGGTA 57.188 40.909 0.00 0.00 0.00 3.08
2573 2653 4.755411 TCCGAAAAATGCTCTACAGGTAG 58.245 43.478 0.00 0.00 34.56 3.18
2574 2654 4.464951 TCCGAAAAATGCTCTACAGGTAGA 59.535 41.667 8.73 8.73 39.67 2.59
2575 2655 5.046878 TCCGAAAAATGCTCTACAGGTAGAA 60.047 40.000 10.15 0.00 41.22 2.10
2576 2656 5.292101 CCGAAAAATGCTCTACAGGTAGAAG 59.708 44.000 10.15 6.21 41.22 2.85
2577 2657 5.869888 CGAAAAATGCTCTACAGGTAGAAGT 59.130 40.000 10.15 0.00 41.22 3.01
2578 2658 6.369065 CGAAAAATGCTCTACAGGTAGAAGTT 59.631 38.462 10.15 0.40 41.22 2.66
2579 2659 7.544566 CGAAAAATGCTCTACAGGTAGAAGTTA 59.455 37.037 10.15 0.00 41.22 2.24
2580 2660 8.779354 AAAAATGCTCTACAGGTAGAAGTTAG 57.221 34.615 10.15 0.53 41.22 2.34
2581 2661 7.483580 AAATGCTCTACAGGTAGAAGTTAGT 57.516 36.000 10.15 0.00 41.22 2.24
2582 2662 5.899120 TGCTCTACAGGTAGAAGTTAGTG 57.101 43.478 10.15 0.00 41.22 2.74
2583 2663 5.322754 TGCTCTACAGGTAGAAGTTAGTGT 58.677 41.667 10.15 0.00 41.22 3.55
2584 2664 5.183331 TGCTCTACAGGTAGAAGTTAGTGTG 59.817 44.000 10.15 0.00 41.22 3.82
2585 2665 5.640189 TCTACAGGTAGAAGTTAGTGTGC 57.360 43.478 6.69 0.00 39.08 4.57
2586 2666 5.322754 TCTACAGGTAGAAGTTAGTGTGCT 58.677 41.667 6.69 0.00 39.08 4.40
2587 2667 6.479006 TCTACAGGTAGAAGTTAGTGTGCTA 58.521 40.000 6.69 0.00 39.08 3.49
2588 2668 6.944290 TCTACAGGTAGAAGTTAGTGTGCTAA 59.056 38.462 6.69 0.00 39.08 3.09
2589 2669 6.415206 ACAGGTAGAAGTTAGTGTGCTAAA 57.585 37.500 0.00 0.00 38.74 1.85
2590 2670 6.823497 ACAGGTAGAAGTTAGTGTGCTAAAA 58.177 36.000 0.00 0.00 38.74 1.52
2591 2671 7.277396 ACAGGTAGAAGTTAGTGTGCTAAAAA 58.723 34.615 0.00 0.00 38.74 1.94
2616 2696 9.788960 AAAAACTCAACTACAGAACTCAATTTC 57.211 29.630 0.00 0.00 0.00 2.17
2617 2697 8.506168 AAACTCAACTACAGAACTCAATTTCA 57.494 30.769 0.00 0.00 0.00 2.69
2618 2698 8.682936 AACTCAACTACAGAACTCAATTTCAT 57.317 30.769 0.00 0.00 0.00 2.57
2619 2699 8.316640 ACTCAACTACAGAACTCAATTTCATC 57.683 34.615 0.00 0.00 0.00 2.92
2620 2700 8.153550 ACTCAACTACAGAACTCAATTTCATCT 58.846 33.333 0.00 0.00 0.00 2.90
2621 2701 8.315391 TCAACTACAGAACTCAATTTCATCTG 57.685 34.615 0.00 0.00 42.43 2.90
2622 2702 7.388776 TCAACTACAGAACTCAATTTCATCTGG 59.611 37.037 6.11 0.00 41.34 3.86
2623 2703 6.176183 ACTACAGAACTCAATTTCATCTGGG 58.824 40.000 6.11 1.74 41.34 4.45
2624 2704 3.760684 ACAGAACTCAATTTCATCTGGGC 59.239 43.478 6.11 0.00 41.34 5.36
2625 2705 3.129988 CAGAACTCAATTTCATCTGGGCC 59.870 47.826 0.00 0.00 35.11 5.80
2626 2706 1.755179 ACTCAATTTCATCTGGGCCG 58.245 50.000 0.00 0.00 0.00 6.13
2627 2707 1.027357 CTCAATTTCATCTGGGCCGG 58.973 55.000 5.83 5.83 0.00 6.13
2628 2708 0.331278 TCAATTTCATCTGGGCCGGT 59.669 50.000 13.14 0.00 0.00 5.28
2629 2709 0.457035 CAATTTCATCTGGGCCGGTG 59.543 55.000 13.14 10.21 0.00 4.94
2630 2710 1.322538 AATTTCATCTGGGCCGGTGC 61.323 55.000 13.14 0.00 0.00 5.01
2631 2711 4.776322 TTCATCTGGGCCGGTGCG 62.776 66.667 13.14 2.10 38.85 5.34
2637 2717 4.652131 TGGGCCGGTGCGTCATTT 62.652 61.111 1.90 0.00 38.85 2.32
2638 2718 3.370231 GGGCCGGTGCGTCATTTT 61.370 61.111 1.90 0.00 38.85 1.82
2639 2719 2.648454 GGCCGGTGCGTCATTTTT 59.352 55.556 1.90 0.00 38.85 1.94
2665 2745 7.499438 TTATTTTGCGAAAAATACCACATCG 57.501 32.000 18.98 0.00 35.16 3.84
2745 2825 4.711355 CCATGGACCACAGAATAACCATTT 59.289 41.667 5.56 0.00 36.22 2.32
2750 2830 4.735369 ACCACAGAATAACCATTTCCACA 58.265 39.130 0.00 0.00 0.00 4.17
2759 2839 1.133513 ACCATTTCCACAGCCAGAACA 60.134 47.619 0.00 0.00 0.00 3.18
2793 2874 2.651105 TTGTCGCCGCTCCCATACA 61.651 57.895 0.00 0.00 0.00 2.29
2804 2885 2.512896 CCATACAGGAGCCAGCCC 59.487 66.667 0.00 0.00 41.22 5.19
2838 2919 1.343465 ACAATCGGGAAGTCTTCGTGT 59.657 47.619 6.50 3.31 0.00 4.49
2850 2931 1.754803 TCTTCGTGTACATGCCCCTAG 59.245 52.381 10.38 3.15 0.00 3.02
2893 2974 2.167693 AGTCATCGCCGTTGAATCCTTA 59.832 45.455 0.00 0.00 0.00 2.69
2902 2983 4.319549 GCCGTTGAATCCTTAAATCGATCC 60.320 45.833 0.00 0.00 0.00 3.36
2962 3044 1.067776 CGAGAAACACTAACCTCGCCT 60.068 52.381 0.00 0.00 41.31 5.52
2965 3047 1.275573 GAAACACTAACCTCGCCTCCT 59.724 52.381 0.00 0.00 0.00 3.69
3021 3103 1.754380 TAATCCATCCCAGCGGACGG 61.754 60.000 0.00 0.00 43.39 4.79
3048 3131 0.695803 AGGATTGGAGCCCGGAAGAT 60.696 55.000 0.73 0.00 0.00 2.40
3094 3177 1.659794 GTCCAAACGCCTTGCATGT 59.340 52.632 0.00 0.00 33.27 3.21
3105 3188 3.425359 CGCCTTGCATGTGAGAACTAAAG 60.425 47.826 0.00 0.00 0.00 1.85
3126 3209 4.166539 AGTCCTACCTATCTACTAGCCGA 58.833 47.826 0.00 0.00 0.00 5.54
3135 3218 1.209019 TCTACTAGCCGAAGACGAGGT 59.791 52.381 0.00 0.00 42.66 3.85
3140 3223 0.683504 AGCCGAAGACGAGGTACCAT 60.684 55.000 15.94 0.00 42.66 3.55
3145 3228 4.690122 CCGAAGACGAGGTACCATAAATT 58.310 43.478 15.94 2.91 42.66 1.82
3152 3235 3.646637 CGAGGTACCATAAATTCCCTCCT 59.353 47.826 15.94 0.00 36.04 3.69
3155 3238 5.297799 AGGTACCATAAATTCCCTCCTCTT 58.702 41.667 15.94 0.00 0.00 2.85
3159 3242 4.079730 ACCATAAATTCCCTCCTCTTCACC 60.080 45.833 0.00 0.00 0.00 4.02
3160 3243 4.464947 CATAAATTCCCTCCTCTTCACCC 58.535 47.826 0.00 0.00 0.00 4.61
3161 3244 0.912486 AATTCCCTCCTCTTCACCCG 59.088 55.000 0.00 0.00 0.00 5.28
3162 3245 0.252742 ATTCCCTCCTCTTCACCCGT 60.253 55.000 0.00 0.00 0.00 5.28
3167 3250 3.691342 CCTCTTCACCCGTCGCCA 61.691 66.667 0.00 0.00 0.00 5.69
3197 3284 2.812619 GGAGGGGAGGCGAATCCAG 61.813 68.421 8.41 0.00 41.52 3.86
3226 3313 2.123251 TGGAGATCGAGGGGAGGC 60.123 66.667 0.00 0.00 0.00 4.70
3242 3329 0.547712 AGGCAGGCTTTCCCTAGTCA 60.548 55.000 0.00 0.00 44.09 3.41
3243 3330 0.548510 GGCAGGCTTTCCCTAGTCAT 59.451 55.000 0.00 0.00 44.09 3.06
3247 3334 3.134804 GCAGGCTTTCCCTAGTCATCTTA 59.865 47.826 0.00 0.00 44.09 2.10
3248 3335 4.202409 GCAGGCTTTCCCTAGTCATCTTAT 60.202 45.833 0.00 0.00 44.09 1.73
3264 3351 6.765512 GTCATCTTATGAGAGGGGAAAGAAAG 59.234 42.308 0.00 0.00 40.53 2.62
3265 3352 5.104259 TCTTATGAGAGGGGAAAGAAAGC 57.896 43.478 0.00 0.00 0.00 3.51
3266 3353 2.409948 ATGAGAGGGGAAAGAAAGCG 57.590 50.000 0.00 0.00 0.00 4.68
3267 3354 0.324943 TGAGAGGGGAAAGAAAGCGG 59.675 55.000 0.00 0.00 0.00 5.52
3268 3355 1.002011 AGAGGGGAAAGAAAGCGGC 60.002 57.895 0.00 0.00 0.00 6.53
3269 3356 1.002011 GAGGGGAAAGAAAGCGGCT 60.002 57.895 0.00 0.00 0.00 5.52
3270 3357 1.303643 AGGGGAAAGAAAGCGGCTG 60.304 57.895 1.81 0.00 0.00 4.85
3271 3358 2.343426 GGGGAAAGAAAGCGGCTGG 61.343 63.158 1.81 0.00 0.00 4.85
3272 3359 1.603739 GGGAAAGAAAGCGGCTGGT 60.604 57.895 1.81 0.00 0.00 4.00
3273 3360 1.581447 GGAAAGAAAGCGGCTGGTG 59.419 57.895 1.81 0.00 0.00 4.17
3274 3361 0.889186 GGAAAGAAAGCGGCTGGTGA 60.889 55.000 1.81 0.00 0.00 4.02
3275 3362 0.519077 GAAAGAAAGCGGCTGGTGAG 59.481 55.000 1.81 0.00 0.00 3.51
3276 3363 0.179018 AAAGAAAGCGGCTGGTGAGT 60.179 50.000 1.81 0.00 0.00 3.41
3277 3364 0.603975 AAGAAAGCGGCTGGTGAGTC 60.604 55.000 1.81 0.00 0.00 3.36
3278 3365 1.301716 GAAAGCGGCTGGTGAGTCA 60.302 57.895 1.81 0.00 0.00 3.41
3279 3366 0.674895 GAAAGCGGCTGGTGAGTCAT 60.675 55.000 1.81 0.00 0.00 3.06
3280 3367 0.250901 AAAGCGGCTGGTGAGTCATT 60.251 50.000 1.81 0.00 0.00 2.57
3281 3368 0.250901 AAGCGGCTGGTGAGTCATTT 60.251 50.000 1.81 0.00 0.00 2.32
3282 3369 0.957395 AGCGGCTGGTGAGTCATTTG 60.957 55.000 0.00 0.00 0.00 2.32
3283 3370 0.955428 GCGGCTGGTGAGTCATTTGA 60.955 55.000 0.00 0.00 0.00 2.69
3284 3371 0.798776 CGGCTGGTGAGTCATTTGAC 59.201 55.000 0.00 2.41 45.08 3.18
3291 3378 2.084610 TGAGTCATTTGACGCAGGAG 57.915 50.000 12.26 0.00 46.99 3.69
3292 3379 1.941209 TGAGTCATTTGACGCAGGAGC 60.941 52.381 12.26 0.00 46.99 4.70
3302 3389 2.511145 GCAGGAGCGCCTCTTCAG 60.511 66.667 5.80 0.00 44.80 3.02
3303 3390 3.011635 GCAGGAGCGCCTCTTCAGA 62.012 63.158 5.80 0.00 44.80 3.27
3304 3391 1.593787 CAGGAGCGCCTCTTCAGAA 59.406 57.895 5.80 0.00 44.80 3.02
3305 3392 0.177604 CAGGAGCGCCTCTTCAGAAT 59.822 55.000 5.80 0.00 44.80 2.40
3306 3393 0.908198 AGGAGCGCCTCTTCAGAATT 59.092 50.000 1.77 0.00 42.19 2.17
3307 3394 1.280421 AGGAGCGCCTCTTCAGAATTT 59.720 47.619 1.77 0.00 42.19 1.82
3308 3395 2.087646 GGAGCGCCTCTTCAGAATTTT 58.912 47.619 2.29 0.00 0.00 1.82
3309 3396 2.096657 GGAGCGCCTCTTCAGAATTTTC 59.903 50.000 2.29 0.00 0.00 2.29
3310 3397 3.006247 GAGCGCCTCTTCAGAATTTTCT 58.994 45.455 2.29 0.00 38.25 2.52
3311 3398 3.416156 AGCGCCTCTTCAGAATTTTCTT 58.584 40.909 2.29 0.00 34.74 2.52
3312 3399 3.823304 AGCGCCTCTTCAGAATTTTCTTT 59.177 39.130 2.29 0.00 34.74 2.52
3313 3400 3.916776 GCGCCTCTTCAGAATTTTCTTTG 59.083 43.478 0.00 0.00 34.74 2.77
3314 3401 4.320494 GCGCCTCTTCAGAATTTTCTTTGA 60.320 41.667 0.00 0.00 34.74 2.69
3315 3402 5.149977 CGCCTCTTCAGAATTTTCTTTGAC 58.850 41.667 0.00 0.00 34.74 3.18
3316 3403 5.149977 GCCTCTTCAGAATTTTCTTTGACG 58.850 41.667 0.00 0.00 34.74 4.35
3317 3404 5.149977 CCTCTTCAGAATTTTCTTTGACGC 58.850 41.667 0.00 0.00 34.74 5.19
3318 3405 5.277974 CCTCTTCAGAATTTTCTTTGACGCA 60.278 40.000 0.00 0.00 34.74 5.24
3319 3406 6.317789 TCTTCAGAATTTTCTTTGACGCAT 57.682 33.333 0.00 0.00 34.74 4.73
3320 3407 6.373779 TCTTCAGAATTTTCTTTGACGCATC 58.626 36.000 0.00 0.00 34.74 3.91
3321 3408 4.711721 TCAGAATTTTCTTTGACGCATCG 58.288 39.130 0.00 0.00 34.74 3.84
3322 3409 4.450757 TCAGAATTTTCTTTGACGCATCGA 59.549 37.500 0.00 0.00 34.74 3.59
3323 3410 4.551126 CAGAATTTTCTTTGACGCATCGAC 59.449 41.667 0.00 0.00 34.74 4.20
3324 3411 2.570468 TTTTCTTTGACGCATCGACG 57.430 45.000 0.00 0.00 39.50 5.12
3325 3412 1.773410 TTTCTTTGACGCATCGACGA 58.227 45.000 0.00 0.00 36.70 4.20
3326 3413 1.990799 TTCTTTGACGCATCGACGAT 58.009 45.000 4.05 4.05 36.70 3.73
3327 3414 1.268265 TCTTTGACGCATCGACGATG 58.732 50.000 29.22 29.22 42.37 3.84
3328 3415 0.298707 CTTTGACGCATCGACGATGG 59.701 55.000 32.61 25.14 40.10 3.51
3329 3416 0.389296 TTTGACGCATCGACGATGGT 60.389 50.000 32.61 27.57 40.10 3.55
3330 3417 1.075979 TTGACGCATCGACGATGGTG 61.076 55.000 32.61 22.96 40.10 4.17
3331 3418 2.202743 ACGCATCGACGATGGTGG 60.203 61.111 32.61 13.23 40.10 4.61
3332 3419 2.104132 CGCATCGACGATGGTGGA 59.896 61.111 32.61 0.00 40.10 4.02
3333 3420 1.300156 CGCATCGACGATGGTGGAT 60.300 57.895 32.61 0.00 41.60 3.41
3334 3421 1.278172 CGCATCGACGATGGTGGATC 61.278 60.000 32.61 17.40 39.27 3.36
3335 3422 0.032678 GCATCGACGATGGTGGATCT 59.967 55.000 32.61 0.00 39.27 2.75
3336 3423 1.932604 GCATCGACGATGGTGGATCTC 60.933 57.143 32.61 14.25 39.27 2.75
3337 3424 0.593618 ATCGACGATGGTGGATCTCG 59.406 55.000 10.09 0.22 37.03 4.04
3338 3425 1.008424 CGACGATGGTGGATCTCGG 60.008 63.158 6.31 0.00 36.74 4.63
3339 3426 1.300233 GACGATGGTGGATCTCGGC 60.300 63.158 6.31 0.00 36.74 5.54
3340 3427 2.355126 CGATGGTGGATCTCGGCG 60.355 66.667 0.00 0.00 0.00 6.46
3341 3428 2.029666 GATGGTGGATCTCGGCGG 59.970 66.667 7.21 0.00 0.00 6.13
3342 3429 4.241555 ATGGTGGATCTCGGCGGC 62.242 66.667 7.21 0.00 0.00 6.53
3344 3431 4.241555 GGTGGATCTCGGCGGCAT 62.242 66.667 10.53 0.00 0.00 4.40
3345 3432 2.969238 GTGGATCTCGGCGGCATG 60.969 66.667 10.53 0.07 0.00 4.06
3346 3433 4.240103 TGGATCTCGGCGGCATGG 62.240 66.667 10.53 0.00 0.00 3.66
3358 3445 3.503363 GCATGGCGCAGTGGAGTC 61.503 66.667 10.83 0.00 41.79 3.36
3359 3446 2.267006 CATGGCGCAGTGGAGTCT 59.733 61.111 10.83 0.00 0.00 3.24
3360 3447 2.104859 CATGGCGCAGTGGAGTCTG 61.105 63.158 10.83 0.00 38.35 3.51
3361 3448 3.320879 ATGGCGCAGTGGAGTCTGG 62.321 63.158 10.83 0.00 36.12 3.86
3365 3452 4.385405 GCAGTGGAGTCTGGCGCT 62.385 66.667 7.64 0.00 36.12 5.92
3366 3453 2.125753 CAGTGGAGTCTGGCGCTC 60.126 66.667 7.64 0.00 0.00 5.03
3367 3454 3.753434 AGTGGAGTCTGGCGCTCG 61.753 66.667 7.64 0.00 34.00 5.03
3368 3455 3.749064 GTGGAGTCTGGCGCTCGA 61.749 66.667 7.64 0.35 34.00 4.04
3369 3456 2.755876 TGGAGTCTGGCGCTCGAT 60.756 61.111 7.64 0.00 34.00 3.59
3370 3457 2.279120 GGAGTCTGGCGCTCGATG 60.279 66.667 7.64 0.00 34.00 3.84
3371 3458 2.492090 GAGTCTGGCGCTCGATGT 59.508 61.111 7.64 0.00 0.00 3.06
3372 3459 1.875813 GAGTCTGGCGCTCGATGTG 60.876 63.158 7.64 0.00 0.00 3.21
3373 3460 2.125912 GTCTGGCGCTCGATGTGT 60.126 61.111 7.64 0.00 0.00 3.72
3374 3461 2.125952 TCTGGCGCTCGATGTGTG 60.126 61.111 7.64 0.00 0.00 3.82
3375 3462 2.433145 CTGGCGCTCGATGTGTGT 60.433 61.111 7.64 0.00 0.00 3.72
3376 3463 1.153842 CTGGCGCTCGATGTGTGTA 60.154 57.895 7.64 0.00 0.00 2.90
3377 3464 1.142185 CTGGCGCTCGATGTGTGTAG 61.142 60.000 7.64 0.00 0.00 2.74
3378 3465 1.138883 GGCGCTCGATGTGTGTAGA 59.861 57.895 7.64 0.00 0.00 2.59
3379 3466 0.249073 GGCGCTCGATGTGTGTAGAT 60.249 55.000 7.64 0.00 0.00 1.98
3380 3467 0.848942 GCGCTCGATGTGTGTAGATG 59.151 55.000 0.00 0.00 0.00 2.90
3381 3468 1.481240 CGCTCGATGTGTGTAGATGG 58.519 55.000 0.00 0.00 0.00 3.51
3382 3469 1.065551 CGCTCGATGTGTGTAGATGGA 59.934 52.381 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.746535 TGCTTGCATTTCCATCATGAAT 57.253 36.364 0.00 0.00 0.00 2.57
248 249 3.327626 TGCGAGTAGATGCCGTTTTTAA 58.672 40.909 0.00 0.00 0.00 1.52
402 407 5.539955 ACCATAAAGCTTTGTCAATCTGGTT 59.460 36.000 22.02 0.68 29.27 3.67
403 408 5.047802 CACCATAAAGCTTTGTCAATCTGGT 60.048 40.000 22.02 13.71 33.72 4.00
404 409 5.183713 TCACCATAAAGCTTTGTCAATCTGG 59.816 40.000 22.02 13.09 0.00 3.86
405 410 6.258230 TCACCATAAAGCTTTGTCAATCTG 57.742 37.500 22.02 7.61 0.00 2.90
406 411 6.294731 GGTTCACCATAAAGCTTTGTCAATCT 60.295 38.462 22.02 0.00 35.64 2.40
407 412 5.863935 GGTTCACCATAAAGCTTTGTCAATC 59.136 40.000 22.02 0.58 35.64 2.67
408 413 5.304101 TGGTTCACCATAAAGCTTTGTCAAT 59.696 36.000 22.02 4.09 42.01 2.57
409 414 4.646945 TGGTTCACCATAAAGCTTTGTCAA 59.353 37.500 22.02 1.00 42.01 3.18
410 415 4.211125 TGGTTCACCATAAAGCTTTGTCA 58.789 39.130 22.02 1.88 42.01 3.58
411 416 4.518970 TCTGGTTCACCATAAAGCTTTGTC 59.481 41.667 22.02 1.91 46.46 3.18
412 417 4.278419 GTCTGGTTCACCATAAAGCTTTGT 59.722 41.667 22.02 12.64 46.46 2.83
413 418 4.520492 AGTCTGGTTCACCATAAAGCTTTG 59.480 41.667 22.02 6.56 46.46 2.77
414 419 4.520492 CAGTCTGGTTCACCATAAAGCTTT 59.480 41.667 17.30 17.30 46.46 3.51
415 420 4.074970 CAGTCTGGTTCACCATAAAGCTT 58.925 43.478 0.00 0.00 46.46 3.74
416 421 3.327757 TCAGTCTGGTTCACCATAAAGCT 59.672 43.478 0.00 0.00 46.46 3.74
417 422 3.674997 TCAGTCTGGTTCACCATAAAGC 58.325 45.455 0.00 0.00 46.46 3.51
418 423 6.633500 TTTTCAGTCTGGTTCACCATAAAG 57.367 37.500 0.00 0.00 46.46 1.85
419 424 7.286546 TGATTTTTCAGTCTGGTTCACCATAAA 59.713 33.333 0.00 0.00 46.46 1.40
420 425 6.775142 TGATTTTTCAGTCTGGTTCACCATAA 59.225 34.615 0.00 0.00 46.46 1.90
421 426 6.303054 TGATTTTTCAGTCTGGTTCACCATA 58.697 36.000 0.00 0.00 46.46 2.74
422 427 5.139727 TGATTTTTCAGTCTGGTTCACCAT 58.860 37.500 0.00 0.00 46.46 3.55
423 428 4.531854 TGATTTTTCAGTCTGGTTCACCA 58.468 39.130 0.00 0.00 45.30 4.17
424 429 5.617751 CGATGATTTTTCAGTCTGGTTCACC 60.618 44.000 0.00 0.00 0.00 4.02
425 430 5.385617 CGATGATTTTTCAGTCTGGTTCAC 58.614 41.667 0.00 0.00 0.00 3.18
426 431 4.455533 CCGATGATTTTTCAGTCTGGTTCA 59.544 41.667 0.00 0.00 0.00 3.18
427 432 4.142600 CCCGATGATTTTTCAGTCTGGTTC 60.143 45.833 0.00 0.00 0.00 3.62
543 548 7.025963 CCATCTCTTTCATGCTCTGTAAAAAC 58.974 38.462 0.00 0.00 0.00 2.43
555 560 7.883833 ACATAATCCATCTCCATCTCTTTCATG 59.116 37.037 0.00 0.00 0.00 3.07
601 606 1.079503 GCCTCAACATCCTTGTCGAC 58.920 55.000 9.11 9.11 34.06 4.20
611 616 2.019249 CCAATGACATCGCCTCAACAT 58.981 47.619 0.00 0.00 0.00 2.71
688 697 7.044249 GCACGTACAACTGATACTAGTACAATG 60.044 40.741 4.31 9.55 35.89 2.82
703 713 1.422950 AACGCAACGCACGTACAACT 61.423 50.000 0.00 0.00 44.30 3.16
706 716 2.165940 ACAACGCAACGCACGTACA 61.166 52.632 0.00 0.00 44.30 2.90
719 729 0.315544 GGTACACACGCAACACAACG 60.316 55.000 0.00 0.00 0.00 4.10
760 773 2.224606 CCTCCAATCATCCGTCAATGG 58.775 52.381 0.00 0.00 0.00 3.16
761 774 1.605710 GCCTCCAATCATCCGTCAATG 59.394 52.381 0.00 0.00 0.00 2.82
762 775 1.477558 GGCCTCCAATCATCCGTCAAT 60.478 52.381 0.00 0.00 0.00 2.57
763 776 0.107214 GGCCTCCAATCATCCGTCAA 60.107 55.000 0.00 0.00 0.00 3.18
764 777 1.526887 GGCCTCCAATCATCCGTCA 59.473 57.895 0.00 0.00 0.00 4.35
784 797 2.807045 CGGCGACTGTGACTGCTC 60.807 66.667 0.00 0.00 0.00 4.26
795 808 2.507547 TCACGGTAATGCGGCGAC 60.508 61.111 12.98 2.02 0.00 5.19
837 850 0.747283 GGAGCACAAGATGAGCCCTG 60.747 60.000 0.00 0.00 34.43 4.45
838 851 0.913451 AGGAGCACAAGATGAGCCCT 60.913 55.000 0.00 1.18 34.43 5.19
841 854 2.278854 GAGAAGGAGCACAAGATGAGC 58.721 52.381 0.00 0.00 34.10 4.26
842 855 2.538437 CGAGAAGGAGCACAAGATGAG 58.462 52.381 0.00 0.00 0.00 2.90
843 856 1.404717 GCGAGAAGGAGCACAAGATGA 60.405 52.381 0.00 0.00 0.00 2.92
844 857 1.005340 GCGAGAAGGAGCACAAGATG 58.995 55.000 0.00 0.00 0.00 2.90
845 858 0.459237 CGCGAGAAGGAGCACAAGAT 60.459 55.000 0.00 0.00 0.00 2.40
846 859 1.080501 CGCGAGAAGGAGCACAAGA 60.081 57.895 0.00 0.00 0.00 3.02
847 860 2.097038 CCGCGAGAAGGAGCACAAG 61.097 63.158 8.23 0.00 0.00 3.16
848 861 1.529152 TACCGCGAGAAGGAGCACAA 61.529 55.000 8.23 0.00 0.00 3.33
849 862 1.974875 TACCGCGAGAAGGAGCACA 60.975 57.895 8.23 0.00 0.00 4.57
850 863 1.516603 GTACCGCGAGAAGGAGCAC 60.517 63.158 8.23 0.00 0.00 4.40
851 864 2.707849 GGTACCGCGAGAAGGAGCA 61.708 63.158 8.23 0.00 0.00 4.26
852 865 2.104530 GGTACCGCGAGAAGGAGC 59.895 66.667 8.23 0.00 0.00 4.70
853 866 2.806237 GGGTACCGCGAGAAGGAG 59.194 66.667 8.23 0.00 40.86 3.69
873 886 0.814457 TGGTTGGATGCCATTAACGC 59.186 50.000 0.00 0.00 31.53 4.84
874 887 1.134175 GGTGGTTGGATGCCATTAACG 59.866 52.381 0.00 0.00 38.40 3.18
876 889 1.468985 CGGTGGTTGGATGCCATTAA 58.531 50.000 0.00 0.00 38.40 1.40
878 891 1.682005 CCGGTGGTTGGATGCCATT 60.682 57.895 0.00 0.00 38.40 3.16
880 893 3.140073 AACCGGTGGTTGGATGCCA 62.140 57.895 8.52 0.00 45.07 4.92
881 894 2.282887 AACCGGTGGTTGGATGCC 60.283 61.111 8.52 0.00 45.07 4.40
883 896 1.472480 GAATGAACCGGTGGTTGGATG 59.528 52.381 8.52 0.00 46.95 3.51
895 914 1.114627 GGATTGGCTGGGAATGAACC 58.885 55.000 0.00 0.00 0.00 3.62
899 918 1.063417 AGGAAGGATTGGCTGGGAATG 60.063 52.381 0.00 0.00 0.00 2.67
904 923 2.025887 ACACTTAGGAAGGATTGGCTGG 60.026 50.000 0.00 0.00 0.00 4.85
921 940 4.796830 CGCGTACTGATAAACATGTACACT 59.203 41.667 0.00 0.00 35.23 3.55
947 968 6.420903 AGCTAGTATGTGTTGCAATATACACG 59.579 38.462 22.40 16.58 45.84 4.49
1077 1098 2.124778 GCCAGGAGGAGAAGCTGC 60.125 66.667 0.00 0.00 36.89 5.25
1143 1176 2.576615 GGCTTTGTGGACAGAGAGTTT 58.423 47.619 1.62 0.00 30.38 2.66
1251 1284 2.758327 AGGACGATGTAGCCGGCA 60.758 61.111 31.54 12.31 36.63 5.69
1448 1505 2.404186 TACCTGCAGCGATCGTCGT 61.404 57.895 17.81 0.25 42.81 4.34
1468 1537 1.305219 CCCGGTCCGTACACGTAGAA 61.305 60.000 11.06 0.00 37.74 2.10
1482 1551 2.754375 GTGGTGTTGATCCCCGGT 59.246 61.111 0.00 0.00 0.00 5.28
1644 1713 1.949133 GACGTTGAGCTGCGACACA 60.949 57.895 0.00 0.00 0.00 3.72
1658 1727 4.022503 GGTAGTAGGAGAACTTGTTGACGT 60.023 45.833 0.00 0.00 0.00 4.34
1722 1791 4.057428 GCGTCACCGAGGAGCACT 62.057 66.667 0.00 0.00 35.63 4.40
1852 1921 4.778143 AGCCGGGATGCCGTTCAC 62.778 66.667 24.84 10.72 0.00 3.18
1866 1935 3.569200 AAGGTCGAAAGCCCCAGCC 62.569 63.158 0.00 0.00 41.25 4.85
1875 1944 1.665599 GTCCGCGGAAAGGTCGAAA 60.666 57.895 32.93 0.00 0.00 3.46
2136 2209 3.120199 CCTTGAAGAAATAGTGCACCGTG 60.120 47.826 14.63 0.00 0.00 4.94
2148 2221 2.466846 GTGACGTCGTCCTTGAAGAAA 58.533 47.619 22.05 0.00 0.00 2.52
2247 2320 1.552792 TCGTAGATCATGTTGGTGCCA 59.447 47.619 0.00 0.00 0.00 4.92
2350 2426 0.396974 AGCACCCAAGCAAGGAACAA 60.397 50.000 0.00 0.00 36.85 2.83
2353 2429 2.202395 GCAGCACCCAAGCAAGGAA 61.202 57.895 0.00 0.00 36.85 3.36
2368 2444 5.860611 TCTAGGTAGCTAGAAGAGTAGCAG 58.139 45.833 25.62 1.76 46.81 4.24
2369 2445 5.890752 TCTAGGTAGCTAGAAGAGTAGCA 57.109 43.478 25.62 3.52 46.81 3.49
2370 2446 6.469410 TCATCTAGGTAGCTAGAAGAGTAGC 58.531 44.000 29.88 0.00 45.06 3.58
2433 2509 9.638239 GAGATTAATATTTCTTGTGGCAAAACA 57.362 29.630 0.00 0.00 0.00 2.83
2454 2530 7.170965 AGAATACACACCACAATTCTGAGATT 58.829 34.615 0.00 0.00 37.31 2.40
2455 2531 6.715280 AGAATACACACCACAATTCTGAGAT 58.285 36.000 0.00 0.00 37.31 2.75
2456 2532 6.114187 AGAATACACACCACAATTCTGAGA 57.886 37.500 0.00 0.00 37.31 3.27
2457 2533 9.770097 ATATAGAATACACACCACAATTCTGAG 57.230 33.333 6.67 0.00 38.71 3.35
2458 2534 9.546428 CATATAGAATACACACCACAATTCTGA 57.454 33.333 6.67 0.00 38.71 3.27
2459 2535 9.330063 ACATATAGAATACACACCACAATTCTG 57.670 33.333 6.67 0.00 38.71 3.02
2460 2536 9.547753 GACATATAGAATACACACCACAATTCT 57.452 33.333 0.00 0.00 40.72 2.40
2461 2537 9.325198 TGACATATAGAATACACACCACAATTC 57.675 33.333 0.00 0.00 0.00 2.17
2462 2538 9.851686 ATGACATATAGAATACACACCACAATT 57.148 29.630 0.00 0.00 0.00 2.32
2463 2539 9.276590 CATGACATATAGAATACACACCACAAT 57.723 33.333 0.00 0.00 0.00 2.71
2464 2540 8.264347 ACATGACATATAGAATACACACCACAA 58.736 33.333 0.00 0.00 0.00 3.33
2465 2541 7.791029 ACATGACATATAGAATACACACCACA 58.209 34.615 0.00 0.00 0.00 4.17
2466 2542 9.758651 TTACATGACATATAGAATACACACCAC 57.241 33.333 0.00 0.00 0.00 4.16
2467 2543 9.758651 GTTACATGACATATAGAATACACACCA 57.241 33.333 0.00 0.00 0.00 4.17
2468 2544 9.982651 AGTTACATGACATATAGAATACACACC 57.017 33.333 0.00 0.00 0.00 4.16
2492 2568 4.342862 ACAAGCATCTTACAGACACAGT 57.657 40.909 0.00 0.00 0.00 3.55
2494 2570 4.562757 GGGTACAAGCATCTTACAGACACA 60.563 45.833 0.00 0.00 0.00 3.72
2552 2632 4.755411 TCTACCTGTAGAGCATTTTTCGG 58.245 43.478 2.91 0.00 37.28 4.30
2553 2633 5.869888 ACTTCTACCTGTAGAGCATTTTTCG 59.130 40.000 7.07 0.00 42.50 3.46
2554 2634 7.674471 AACTTCTACCTGTAGAGCATTTTTC 57.326 36.000 7.07 0.00 42.50 2.29
2555 2635 8.376270 ACTAACTTCTACCTGTAGAGCATTTTT 58.624 33.333 7.07 0.49 42.50 1.94
2556 2636 7.819900 CACTAACTTCTACCTGTAGAGCATTTT 59.180 37.037 7.07 1.86 42.50 1.82
2557 2637 7.038941 ACACTAACTTCTACCTGTAGAGCATTT 60.039 37.037 7.07 3.25 42.50 2.32
2558 2638 6.437793 ACACTAACTTCTACCTGTAGAGCATT 59.562 38.462 7.07 6.21 42.50 3.56
2559 2639 5.952947 ACACTAACTTCTACCTGTAGAGCAT 59.047 40.000 7.07 1.48 42.50 3.79
2560 2640 5.183331 CACACTAACTTCTACCTGTAGAGCA 59.817 44.000 7.07 0.00 42.50 4.26
2561 2641 5.642686 CACACTAACTTCTACCTGTAGAGC 58.357 45.833 7.07 0.00 42.50 4.09
2562 2642 5.416326 AGCACACTAACTTCTACCTGTAGAG 59.584 44.000 7.07 5.13 42.50 2.43
2563 2643 5.322754 AGCACACTAACTTCTACCTGTAGA 58.677 41.667 2.91 2.91 40.17 2.59
2564 2644 5.646577 AGCACACTAACTTCTACCTGTAG 57.353 43.478 0.00 0.00 34.56 2.74
2565 2645 7.528996 TTTAGCACACTAACTTCTACCTGTA 57.471 36.000 0.00 0.00 38.11 2.74
2566 2646 6.415206 TTTAGCACACTAACTTCTACCTGT 57.585 37.500 0.00 0.00 38.11 4.00
2567 2647 7.724305 TTTTTAGCACACTAACTTCTACCTG 57.276 36.000 0.00 0.00 38.11 4.00
2590 2670 9.788960 GAAATTGAGTTCTGTAGTTGAGTTTTT 57.211 29.630 0.00 0.00 0.00 1.94
2591 2671 8.956426 TGAAATTGAGTTCTGTAGTTGAGTTTT 58.044 29.630 0.00 0.00 0.00 2.43
2592 2672 8.506168 TGAAATTGAGTTCTGTAGTTGAGTTT 57.494 30.769 0.00 0.00 0.00 2.66
2593 2673 8.682936 ATGAAATTGAGTTCTGTAGTTGAGTT 57.317 30.769 0.00 0.00 0.00 3.01
2594 2674 8.153550 AGATGAAATTGAGTTCTGTAGTTGAGT 58.846 33.333 0.00 0.00 0.00 3.41
2595 2675 8.441608 CAGATGAAATTGAGTTCTGTAGTTGAG 58.558 37.037 0.00 0.00 31.36 3.02
2596 2676 7.388776 CCAGATGAAATTGAGTTCTGTAGTTGA 59.611 37.037 0.00 0.00 33.56 3.18
2597 2677 7.361542 CCCAGATGAAATTGAGTTCTGTAGTTG 60.362 40.741 0.00 0.00 33.56 3.16
2598 2678 6.656693 CCCAGATGAAATTGAGTTCTGTAGTT 59.343 38.462 0.00 0.00 33.56 2.24
2599 2679 6.176183 CCCAGATGAAATTGAGTTCTGTAGT 58.824 40.000 0.00 0.00 33.56 2.73
2600 2680 5.065731 GCCCAGATGAAATTGAGTTCTGTAG 59.934 44.000 0.00 0.00 33.56 2.74
2601 2681 4.943705 GCCCAGATGAAATTGAGTTCTGTA 59.056 41.667 0.00 0.00 33.56 2.74
2602 2682 3.760684 GCCCAGATGAAATTGAGTTCTGT 59.239 43.478 0.00 0.00 33.56 3.41
2603 2683 3.129988 GGCCCAGATGAAATTGAGTTCTG 59.870 47.826 0.00 0.00 34.86 3.02
2604 2684 3.359950 GGCCCAGATGAAATTGAGTTCT 58.640 45.455 0.00 0.00 0.00 3.01
2605 2685 2.098117 CGGCCCAGATGAAATTGAGTTC 59.902 50.000 0.00 0.00 0.00 3.01
2606 2686 2.094675 CGGCCCAGATGAAATTGAGTT 58.905 47.619 0.00 0.00 0.00 3.01
2607 2687 1.683011 CCGGCCCAGATGAAATTGAGT 60.683 52.381 0.00 0.00 0.00 3.41
2608 2688 1.027357 CCGGCCCAGATGAAATTGAG 58.973 55.000 0.00 0.00 0.00 3.02
2609 2689 0.331278 ACCGGCCCAGATGAAATTGA 59.669 50.000 0.00 0.00 0.00 2.57
2610 2690 0.457035 CACCGGCCCAGATGAAATTG 59.543 55.000 0.00 0.00 0.00 2.32
2611 2691 1.322538 GCACCGGCCCAGATGAAATT 61.323 55.000 0.00 0.00 0.00 1.82
2612 2692 1.754234 GCACCGGCCCAGATGAAAT 60.754 57.895 0.00 0.00 0.00 2.17
2613 2693 2.361104 GCACCGGCCCAGATGAAA 60.361 61.111 0.00 0.00 0.00 2.69
2614 2694 4.776322 CGCACCGGCCCAGATGAA 62.776 66.667 0.00 0.00 36.38 2.57
2620 2700 4.652131 AAATGACGCACCGGCCCA 62.652 61.111 0.00 0.00 31.60 5.36
2621 2701 2.926420 AAAAATGACGCACCGGCCC 61.926 57.895 0.00 0.00 31.60 5.80
2622 2702 2.648454 AAAAATGACGCACCGGCC 59.352 55.556 0.00 0.00 31.60 6.13
2639 2719 8.428536 CGATGTGGTATTTTTCGCAAAATAAAA 58.571 29.630 13.37 3.97 43.44 1.52
2640 2720 7.595502 ACGATGTGGTATTTTTCGCAAAATAAA 59.404 29.630 13.37 4.27 43.44 1.40
2641 2721 7.085116 ACGATGTGGTATTTTTCGCAAAATAA 58.915 30.769 13.37 0.73 43.44 1.40
2642 2722 6.613233 ACGATGTGGTATTTTTCGCAAAATA 58.387 32.000 8.61 8.61 41.84 1.40
2643 2723 5.465935 ACGATGTGGTATTTTTCGCAAAAT 58.534 33.333 10.53 10.53 43.67 1.82
2644 2724 4.861210 ACGATGTGGTATTTTTCGCAAAA 58.139 34.783 0.00 0.00 36.30 2.44
2645 2725 4.491234 ACGATGTGGTATTTTTCGCAAA 57.509 36.364 0.00 0.00 33.30 3.68
2646 2726 5.608676 TTACGATGTGGTATTTTTCGCAA 57.391 34.783 0.00 0.00 33.30 4.85
2647 2727 5.408909 TCTTTACGATGTGGTATTTTTCGCA 59.591 36.000 0.00 0.00 33.30 5.10
2648 2728 5.860641 TCTTTACGATGTGGTATTTTTCGC 58.139 37.500 0.00 0.00 33.30 4.70
2649 2729 8.172484 TGAATCTTTACGATGTGGTATTTTTCG 58.828 33.333 0.00 0.00 35.99 3.46
2652 2732 9.787532 CAATGAATCTTTACGATGTGGTATTTT 57.212 29.630 0.00 0.00 31.20 1.82
2653 2733 8.405531 CCAATGAATCTTTACGATGTGGTATTT 58.594 33.333 0.00 0.00 31.20 1.40
2654 2734 7.773224 TCCAATGAATCTTTACGATGTGGTATT 59.227 33.333 0.00 0.00 31.20 1.89
2655 2735 7.279615 TCCAATGAATCTTTACGATGTGGTAT 58.720 34.615 0.00 0.00 31.20 2.73
2656 2736 6.645306 TCCAATGAATCTTTACGATGTGGTA 58.355 36.000 0.00 0.00 31.20 3.25
2657 2737 5.496556 TCCAATGAATCTTTACGATGTGGT 58.503 37.500 0.00 0.00 31.20 4.16
2658 2738 6.094048 ACTTCCAATGAATCTTTACGATGTGG 59.906 38.462 0.00 0.00 31.20 4.17
2659 2739 7.076842 ACTTCCAATGAATCTTTACGATGTG 57.923 36.000 0.00 0.00 31.20 3.21
2660 2740 7.822334 TGTACTTCCAATGAATCTTTACGATGT 59.178 33.333 0.00 0.00 31.20 3.06
2661 2741 8.196802 TGTACTTCCAATGAATCTTTACGATG 57.803 34.615 0.00 0.00 31.20 3.84
2662 2742 8.786826 TTGTACTTCCAATGAATCTTTACGAT 57.213 30.769 0.00 0.00 0.00 3.73
2663 2743 8.610248 TTTGTACTTCCAATGAATCTTTACGA 57.390 30.769 0.00 0.00 0.00 3.43
2664 2744 9.113876 GTTTTGTACTTCCAATGAATCTTTACG 57.886 33.333 0.00 0.00 0.00 3.18
2665 2745 9.959749 TGTTTTGTACTTCCAATGAATCTTTAC 57.040 29.630 0.00 0.00 0.00 2.01
2709 2789 1.203052 GTCCATGGACCTCGACGTAAA 59.797 52.381 31.37 0.00 39.08 2.01
2733 2813 4.019174 CTGGCTGTGGAAATGGTTATTCT 58.981 43.478 0.00 0.00 0.00 2.40
2738 2818 1.963515 GTTCTGGCTGTGGAAATGGTT 59.036 47.619 0.00 0.00 0.00 3.67
2745 2825 1.228245 GGCTTGTTCTGGCTGTGGA 60.228 57.895 0.00 0.00 0.00 4.02
2774 2854 2.171725 GTATGGGAGCGGCGACAAC 61.172 63.158 12.98 0.00 0.00 3.32
2775 2855 2.185867 GTATGGGAGCGGCGACAA 59.814 61.111 12.98 0.00 0.00 3.18
2822 2903 1.608055 TGTACACGAAGACTTCCCGA 58.392 50.000 9.63 0.00 0.00 5.14
2893 2974 8.208718 TGATGTTAAATTCTTCGGATCGATTT 57.791 30.769 0.00 0.00 35.23 2.17
2902 2983 9.702726 ACACGATATTTGATGTTAAATTCTTCG 57.297 29.630 0.00 0.00 34.95 3.79
2978 3060 3.202706 GCTCCGGCGTTGATTCCC 61.203 66.667 6.01 0.00 0.00 3.97
3021 3103 1.134250 GGGCTCCAATCCTCTCAAGTC 60.134 57.143 0.00 0.00 0.00 3.01
3048 3131 2.755650 GGCACTTCTTCTTCGAGTCAA 58.244 47.619 0.00 0.00 0.00 3.18
3087 3170 4.973168 AGGACTTTAGTTCTCACATGCAA 58.027 39.130 0.00 0.00 0.00 4.08
3088 3171 4.623932 AGGACTTTAGTTCTCACATGCA 57.376 40.909 0.00 0.00 0.00 3.96
3089 3172 4.870991 GGTAGGACTTTAGTTCTCACATGC 59.129 45.833 0.00 0.00 35.11 4.06
3094 3177 8.780003 AGTAGATAGGTAGGACTTTAGTTCTCA 58.220 37.037 0.00 0.00 35.11 3.27
3105 3188 4.550076 TCGGCTAGTAGATAGGTAGGAC 57.450 50.000 0.00 0.00 31.55 3.85
3126 3209 4.720273 AGGGAATTTATGGTACCTCGTCTT 59.280 41.667 14.36 1.40 0.00 3.01
3135 3218 5.132144 GGTGAAGAGGAGGGAATTTATGGTA 59.868 44.000 0.00 0.00 0.00 3.25
3140 3223 2.504175 CGGGTGAAGAGGAGGGAATTTA 59.496 50.000 0.00 0.00 0.00 1.40
3145 3228 1.305046 GACGGGTGAAGAGGAGGGA 60.305 63.158 0.00 0.00 0.00 4.20
3152 3235 2.599281 TCTGGCGACGGGTGAAGA 60.599 61.111 0.00 0.00 37.31 2.87
3226 3313 3.922171 AAGATGACTAGGGAAAGCCTG 57.078 47.619 0.00 0.00 0.00 4.85
3242 3329 5.686124 CGCTTTCTTTCCCCTCTCATAAGAT 60.686 44.000 0.00 0.00 0.00 2.40
3243 3330 4.383118 CGCTTTCTTTCCCCTCTCATAAGA 60.383 45.833 0.00 0.00 0.00 2.10
3247 3334 1.065126 CCGCTTTCTTTCCCCTCTCAT 60.065 52.381 0.00 0.00 0.00 2.90
3248 3335 0.324943 CCGCTTTCTTTCCCCTCTCA 59.675 55.000 0.00 0.00 0.00 3.27
3264 3351 0.955428 TCAAATGACTCACCAGCCGC 60.955 55.000 0.00 0.00 0.00 6.53
3265 3352 0.798776 GTCAAATGACTCACCAGCCG 59.201 55.000 6.30 0.00 41.65 5.52
3266 3353 0.798776 CGTCAAATGACTCACCAGCC 59.201 55.000 11.45 0.00 42.66 4.85
3267 3354 0.166814 GCGTCAAATGACTCACCAGC 59.833 55.000 11.45 3.08 42.66 4.85
3268 3355 1.462283 CTGCGTCAAATGACTCACCAG 59.538 52.381 11.45 8.38 42.66 4.00
3269 3356 1.511850 CTGCGTCAAATGACTCACCA 58.488 50.000 11.45 3.36 42.66 4.17
3270 3357 0.798776 CCTGCGTCAAATGACTCACC 59.201 55.000 11.45 0.00 42.66 4.02
3271 3358 1.728971 CTCCTGCGTCAAATGACTCAC 59.271 52.381 11.45 2.37 42.66 3.51
3272 3359 1.941209 GCTCCTGCGTCAAATGACTCA 60.941 52.381 11.45 8.75 42.66 3.41
3273 3360 0.723981 GCTCCTGCGTCAAATGACTC 59.276 55.000 11.45 4.42 42.66 3.36
3274 3361 2.846371 GCTCCTGCGTCAAATGACT 58.154 52.632 11.45 0.00 42.66 3.41
3285 3372 2.511145 CTGAAGAGGCGCTCCTGC 60.511 66.667 7.64 3.80 44.46 4.85
3286 3373 0.177604 ATTCTGAAGAGGCGCTCCTG 59.822 55.000 7.64 0.00 44.46 3.86
3287 3374 6.383485 AGAAAATTCTGAAGAGGCGCTCCT 62.383 45.833 7.64 0.00 40.03 3.69
3288 3375 1.743996 AAATTCTGAAGAGGCGCTCC 58.256 50.000 7.64 0.00 0.00 4.70
3289 3376 3.006247 AGAAAATTCTGAAGAGGCGCTC 58.994 45.455 7.64 2.67 35.89 5.03
3290 3377 3.064900 AGAAAATTCTGAAGAGGCGCT 57.935 42.857 7.64 0.00 35.89 5.92
3291 3378 3.839051 AAGAAAATTCTGAAGAGGCGC 57.161 42.857 0.00 0.00 37.65 6.53
3292 3379 5.149977 GTCAAAGAAAATTCTGAAGAGGCG 58.850 41.667 0.00 0.00 37.65 5.52
3293 3380 5.149977 CGTCAAAGAAAATTCTGAAGAGGC 58.850 41.667 0.00 0.00 37.65 4.70
3294 3381 5.149977 GCGTCAAAGAAAATTCTGAAGAGG 58.850 41.667 0.00 3.15 37.65 3.69
3295 3382 5.751680 TGCGTCAAAGAAAATTCTGAAGAG 58.248 37.500 0.00 0.00 37.65 2.85
3296 3383 5.749596 TGCGTCAAAGAAAATTCTGAAGA 57.250 34.783 0.00 0.00 37.65 2.87
3297 3384 5.282310 CGATGCGTCAAAGAAAATTCTGAAG 59.718 40.000 6.75 0.00 37.65 3.02
3298 3385 5.049749 TCGATGCGTCAAAGAAAATTCTGAA 60.050 36.000 6.75 0.00 37.65 3.02
3299 3386 4.450757 TCGATGCGTCAAAGAAAATTCTGA 59.549 37.500 6.75 0.00 37.65 3.27
3300 3387 4.551126 GTCGATGCGTCAAAGAAAATTCTG 59.449 41.667 6.75 0.00 37.65 3.02
3301 3388 4.666655 CGTCGATGCGTCAAAGAAAATTCT 60.667 41.667 6.75 0.00 39.74 2.40
3302 3389 3.534516 CGTCGATGCGTCAAAGAAAATTC 59.465 43.478 6.75 0.00 0.00 2.17
3303 3390 3.185594 TCGTCGATGCGTCAAAGAAAATT 59.814 39.130 6.75 0.00 0.00 1.82
3304 3391 2.734606 TCGTCGATGCGTCAAAGAAAAT 59.265 40.909 6.75 0.00 0.00 1.82
3305 3392 2.128821 TCGTCGATGCGTCAAAGAAAA 58.871 42.857 6.75 0.00 0.00 2.29
3306 3393 1.773410 TCGTCGATGCGTCAAAGAAA 58.227 45.000 6.75 0.00 0.00 2.52
3307 3394 1.653609 CATCGTCGATGCGTCAAAGAA 59.346 47.619 21.42 0.00 33.17 2.52
3308 3395 1.268265 CATCGTCGATGCGTCAAAGA 58.732 50.000 21.42 0.00 33.17 2.52
3309 3396 0.298707 CCATCGTCGATGCGTCAAAG 59.701 55.000 26.43 9.82 38.59 2.77
3310 3397 0.389296 ACCATCGTCGATGCGTCAAA 60.389 50.000 26.43 0.00 38.59 2.69
3311 3398 1.075979 CACCATCGTCGATGCGTCAA 61.076 55.000 26.43 0.00 38.59 3.18
3312 3399 1.516169 CACCATCGTCGATGCGTCA 60.516 57.895 26.43 0.00 38.59 4.35
3313 3400 2.230940 CCACCATCGTCGATGCGTC 61.231 63.158 26.43 0.00 38.59 5.19
3314 3401 2.016393 ATCCACCATCGTCGATGCGT 62.016 55.000 26.43 21.75 38.59 5.24
3315 3402 1.278172 GATCCACCATCGTCGATGCG 61.278 60.000 26.43 21.19 38.59 4.73
3316 3403 0.032678 AGATCCACCATCGTCGATGC 59.967 55.000 26.43 13.52 38.59 3.91
3317 3404 1.664302 CGAGATCCACCATCGTCGATG 60.664 57.143 25.19 25.19 39.52 3.84
3318 3405 0.593618 CGAGATCCACCATCGTCGAT 59.406 55.000 0.75 0.75 35.69 3.59
3319 3406 1.444917 CCGAGATCCACCATCGTCGA 61.445 60.000 0.00 0.00 35.69 4.20
3320 3407 1.008424 CCGAGATCCACCATCGTCG 60.008 63.158 1.33 0.00 36.50 5.12
3321 3408 1.300233 GCCGAGATCCACCATCGTC 60.300 63.158 1.33 0.00 36.50 4.20
3322 3409 2.815308 GCCGAGATCCACCATCGT 59.185 61.111 1.33 0.00 36.50 3.73
3323 3410 2.355126 CGCCGAGATCCACCATCG 60.355 66.667 0.00 0.00 36.50 3.84
3324 3411 2.029666 CCGCCGAGATCCACCATC 59.970 66.667 0.00 0.00 0.00 3.51
3325 3412 4.241555 GCCGCCGAGATCCACCAT 62.242 66.667 0.00 0.00 0.00 3.55
3327 3414 4.241555 ATGCCGCCGAGATCCACC 62.242 66.667 0.00 0.00 0.00 4.61
3328 3415 2.969238 CATGCCGCCGAGATCCAC 60.969 66.667 0.00 0.00 0.00 4.02
3329 3416 4.240103 CCATGCCGCCGAGATCCA 62.240 66.667 0.00 0.00 0.00 3.41
3341 3428 3.503363 GACTCCACTGCGCCATGC 61.503 66.667 4.18 0.00 46.70 4.06
3342 3429 2.104859 CAGACTCCACTGCGCCATG 61.105 63.158 4.18 2.35 0.00 3.66
3343 3430 2.267006 CAGACTCCACTGCGCCAT 59.733 61.111 4.18 0.00 0.00 4.40
3344 3431 4.007644 CCAGACTCCACTGCGCCA 62.008 66.667 4.18 0.00 36.67 5.69
3348 3435 4.385405 AGCGCCAGACTCCACTGC 62.385 66.667 2.29 0.00 36.67 4.40
3349 3436 2.125753 GAGCGCCAGACTCCACTG 60.126 66.667 2.29 0.00 37.61 3.66
3350 3437 3.753434 CGAGCGCCAGACTCCACT 61.753 66.667 2.29 0.00 0.00 4.00
3351 3438 3.069980 ATCGAGCGCCAGACTCCAC 62.070 63.158 2.29 0.00 0.00 4.02
3352 3439 2.755876 ATCGAGCGCCAGACTCCA 60.756 61.111 2.29 0.00 0.00 3.86
3353 3440 2.279120 CATCGAGCGCCAGACTCC 60.279 66.667 2.29 0.00 0.00 3.85
3354 3441 1.875813 CACATCGAGCGCCAGACTC 60.876 63.158 2.29 0.00 0.00 3.36
3355 3442 2.182791 CACATCGAGCGCCAGACT 59.817 61.111 2.29 0.00 0.00 3.24
3356 3443 2.125912 ACACATCGAGCGCCAGAC 60.126 61.111 2.29 0.00 0.00 3.51
3357 3444 1.591504 TACACACATCGAGCGCCAGA 61.592 55.000 2.29 3.84 0.00 3.86
3358 3445 1.142185 CTACACACATCGAGCGCCAG 61.142 60.000 2.29 0.00 0.00 4.85
3359 3446 1.153842 CTACACACATCGAGCGCCA 60.154 57.895 2.29 0.00 0.00 5.69
3360 3447 0.249073 ATCTACACACATCGAGCGCC 60.249 55.000 2.29 0.00 0.00 6.53
3361 3448 0.848942 CATCTACACACATCGAGCGC 59.151 55.000 0.00 0.00 0.00 5.92
3362 3449 1.065551 TCCATCTACACACATCGAGCG 59.934 52.381 0.00 0.00 0.00 5.03
3363 3450 2.871182 TCCATCTACACACATCGAGC 57.129 50.000 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.