Multiple sequence alignment - TraesCS4A01G470600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G470600 chr4A 100.000 7257 0 0 1 7257 731405260 731412516 0.000000e+00 13402
1 TraesCS4A01G470600 chr4A 85.920 3125 369 40 1783 4873 729636720 729639807 0.000000e+00 3267
2 TraesCS4A01G470600 chr4A 88.370 2227 227 13 2576 4794 730114070 730111868 0.000000e+00 2649
3 TraesCS4A01G470600 chr4A 82.680 2269 311 45 2754 4986 728501299 728499077 0.000000e+00 1938
4 TraesCS4A01G470600 chr4A 84.027 1177 138 30 4934 6091 729639802 729640947 0.000000e+00 1086
5 TraesCS4A01G470600 chr4A 87.080 565 66 6 1982 2544 730114628 730114069 3.690000e-177 632
6 TraesCS4A01G470600 chr4A 76.285 856 136 46 1693 2527 728503889 728503080 1.900000e-105 394
7 TraesCS4A01G470600 chr4A 85.222 406 30 14 750 1136 731405827 731406221 2.450000e-104 390
8 TraesCS4A01G470600 chr4A 85.222 406 30 14 568 962 731406009 731406395 2.450000e-104 390
9 TraesCS4A01G470600 chr4A 79.775 534 65 22 6018 6532 728487189 728486680 1.500000e-91 348
10 TraesCS4A01G470600 chr4A 80.550 473 68 16 5478 5942 728487646 728487190 6.970000e-90 342
11 TraesCS4A01G470600 chr4A 98.333 120 2 0 210 329 658949233 658949114 2.050000e-50 211
12 TraesCS4A01G470600 chr4A 92.857 84 6 0 7111 7194 730364304 730364387 9.890000e-24 122
13 TraesCS4A01G470600 chr7D 95.193 4660 143 34 571 5219 8348551 8343962 0.000000e+00 7289
14 TraesCS4A01G470600 chr7D 88.337 3807 392 29 1767 5543 9309692 9313476 0.000000e+00 4523
15 TraesCS4A01G470600 chr7D 82.394 2272 312 52 2754 4986 10498719 10496497 0.000000e+00 1899
16 TraesCS4A01G470600 chr7D 86.808 849 53 26 6016 6822 8343491 8342660 0.000000e+00 893
17 TraesCS4A01G470600 chr7D 96.829 473 15 0 5287 5759 8343968 8343496 0.000000e+00 791
18 TraesCS4A01G470600 chr7D 81.070 935 122 26 5019 5942 10496499 10495609 0.000000e+00 695
19 TraesCS4A01G470600 chr7D 85.678 398 38 11 750 1136 8348554 8348165 1.130000e-107 401
20 TraesCS4A01G470600 chr7D 82.328 481 47 15 590 1062 8348347 8347897 4.110000e-102 383
21 TraesCS4A01G470600 chr7D 75.467 856 140 44 1693 2527 10501306 10500500 3.220000e-93 353
22 TraesCS4A01G470600 chr7D 90.980 255 20 2 327 580 8348841 8348589 2.510000e-89 340
23 TraesCS4A01G470600 chr7D 93.939 132 6 2 209 339 600970966 600971096 1.600000e-46 198
24 TraesCS4A01G470600 chr7D 81.776 214 22 9 938 1136 8348554 8348343 5.830000e-36 163
25 TraesCS4A01G470600 chr7D 89.535 86 6 1 129 214 8348921 8348839 9.960000e-19 106
26 TraesCS4A01G470600 chr7A 88.022 3715 378 29 1768 5454 8780950 8777275 0.000000e+00 4333
27 TraesCS4A01G470600 chr7A 85.317 2479 306 23 1765 4215 9008255 9010703 0.000000e+00 2508
28 TraesCS4A01G470600 chr7A 88.537 663 68 5 4219 4877 9011895 9012553 0.000000e+00 797
29 TraesCS4A01G470600 chr7A 83.414 826 92 24 5137 5942 9013681 9014481 0.000000e+00 725
30 TraesCS4A01G470600 chr7A 87.015 670 41 16 6171 6822 8774965 8774324 0.000000e+00 713
31 TraesCS4A01G470600 chr7A 84.924 723 81 17 5452 6171 8775752 8775055 0.000000e+00 706
32 TraesCS4A01G470600 chr7A 86.667 390 27 8 6823 7194 8774286 8773904 6.780000e-110 409
33 TraesCS4A01G470600 chr7A 89.520 229 22 2 4913 5140 9012553 9012780 9.210000e-74 289
34 TraesCS4A01G470600 chr7A 78.516 256 42 10 4835 5082 3020349 3020599 9.750000e-34 156
35 TraesCS4A01G470600 chr7A 83.761 117 16 3 6249 6364 3415876 3415990 2.770000e-19 108
36 TraesCS4A01G470600 chr2D 85.102 3618 407 70 2630 6183 603209149 603212698 0.000000e+00 3574
37 TraesCS4A01G470600 chr2D 85.479 909 124 3 1702 2602 603208246 603209154 0.000000e+00 941
38 TraesCS4A01G470600 chrUn 97.541 122 3 0 209 330 87827390 87827511 7.380000e-50 209
39 TraesCS4A01G470600 chrUn 97.541 122 3 0 209 330 309972435 309972556 7.380000e-50 209
40 TraesCS4A01G470600 chr3B 97.541 122 3 0 210 331 637086447 637086326 7.380000e-50 209
41 TraesCS4A01G470600 chr3B 96.094 128 5 0 204 331 692838375 692838248 7.380000e-50 209
42 TraesCS4A01G470600 chr2B 94.030 134 6 2 212 343 532866089 532865956 1.230000e-47 202
43 TraesCS4A01G470600 chr2B 88.166 169 16 4 191 356 142446778 142446611 1.600000e-46 198
44 TraesCS4A01G470600 chr2B 73.894 452 81 23 5928 6375 790275168 790274750 5.870000e-31 147
45 TraesCS4A01G470600 chr2B 92.857 70 4 1 6608 6677 790274613 790274545 4.630000e-17 100
46 TraesCS4A01G470600 chr3D 92.806 139 6 4 192 330 46259495 46259361 1.600000e-46 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G470600 chr4A 731405260 731412516 7256 False 13402.000000 13402 100.000000 1 7257 1 chr4A.!!$F2 7256
1 TraesCS4A01G470600 chr4A 729636720 729640947 4227 False 2176.500000 3267 84.973500 1783 6091 2 chr4A.!!$F3 4308
2 TraesCS4A01G470600 chr4A 730111868 730114628 2760 True 1640.500000 2649 87.725000 1982 4794 2 chr4A.!!$R4 2812
3 TraesCS4A01G470600 chr4A 728499077 728503889 4812 True 1166.000000 1938 79.482500 1693 4986 2 chr4A.!!$R3 3293
4 TraesCS4A01G470600 chr4A 731405827 731406395 568 False 390.000000 390 85.222000 568 1136 2 chr4A.!!$F4 568
5 TraesCS4A01G470600 chr4A 728486680 728487646 966 True 345.000000 348 80.162500 5478 6532 2 chr4A.!!$R2 1054
6 TraesCS4A01G470600 chr7D 9309692 9313476 3784 False 4523.000000 4523 88.337000 1767 5543 1 chr7D.!!$F1 3776
7 TraesCS4A01G470600 chr7D 8342660 8348921 6261 True 1295.750000 7289 88.640875 129 6822 8 chr7D.!!$R1 6693
8 TraesCS4A01G470600 chr7D 10495609 10501306 5697 True 982.333333 1899 79.643667 1693 5942 3 chr7D.!!$R2 4249
9 TraesCS4A01G470600 chr7A 8773904 8780950 7046 True 1540.250000 4333 86.657000 1768 7194 4 chr7A.!!$R1 5426
10 TraesCS4A01G470600 chr7A 9008255 9014481 6226 False 1079.750000 2508 86.697000 1765 5942 4 chr7A.!!$F3 4177
11 TraesCS4A01G470600 chr2D 603208246 603212698 4452 False 2257.500000 3574 85.290500 1702 6183 2 chr2D.!!$F1 4481

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.0 44.66 3.13 F
326 327 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.0 46.06 3.85 F
327 328 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.0 46.06 2.59 F
545 547 0.885196 GCCACTAACGCCAATTCCAA 59.115 50.000 0.00 0.0 0.00 3.53 F
1142 1196 0.106708 ACTAGGGCTGTGTGTGTGTG 59.893 55.000 0.00 0.0 0.00 3.82 F
1144 1198 0.179059 TAGGGCTGTGTGTGTGTGTG 60.179 55.000 0.00 0.0 0.00 3.82 F
1148 1202 0.179192 GCTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.0 0.00 3.82 F
2266 2366 0.246360 ACGATGACACAGATGGCGAA 59.754 50.000 0.00 0.0 36.14 4.70 F
3191 4901 1.066908 ACGTGAAAACTGGGCAACATG 59.933 47.619 0.00 0.0 39.74 3.21 F
3390 5100 2.022238 GCGGAAGGGTTTATCCAAGGG 61.022 57.143 0.00 0.0 38.11 3.95 F
5213 9049 0.929244 ACAGGGGATGGAAGGAATGG 59.071 55.000 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1131 1185 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72 R
1137 1191 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72 R
1141 1195 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72 R
2527 2639 0.244721 GAAGTTGCCTCCACCATTGC 59.755 55.000 0.00 0.00 0.00 3.56 R
2661 2780 0.171455 CTGCTGTAGGTCGAGGTCAC 59.829 60.000 0.00 0.00 0.00 3.67 R
2665 2784 0.752009 TAGGCTGCTGTAGGTCGAGG 60.752 60.000 0.00 0.00 0.00 4.63 R
2822 4523 4.202749 TGAAGAACCTACCAGGAGGAGTAA 60.203 45.833 1.94 0.00 37.67 2.24 R
3684 5406 1.148273 TGCCTTGCCGAAGACTGTT 59.852 52.632 0.00 0.00 0.00 3.16 R
4623 7548 1.078656 AGAGCTCCCTCTTGGACTTCT 59.921 52.381 10.93 0.00 46.16 2.85 R
5379 9293 0.042131 ATTACCTGGGACGTCCTCCA 59.958 55.000 32.52 21.89 41.63 3.86 R
6531 12144 0.179059 TGGCAACGATCGCATACCAT 60.179 50.000 16.60 0.00 42.51 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.746052 TTGTTCAACTAATTGTATATGGGGAG 57.254 34.615 0.00 0.00 37.11 4.30
26 27 6.770785 TGTTCAACTAATTGTATATGGGGAGC 59.229 38.462 0.00 0.00 37.11 4.70
27 28 5.876357 TCAACTAATTGTATATGGGGAGCC 58.124 41.667 0.00 0.00 37.11 4.70
28 29 5.610982 TCAACTAATTGTATATGGGGAGCCT 59.389 40.000 0.00 0.00 37.11 4.58
29 30 5.505181 ACTAATTGTATATGGGGAGCCTG 57.495 43.478 0.00 0.00 0.00 4.85
30 31 5.162637 ACTAATTGTATATGGGGAGCCTGA 58.837 41.667 0.00 0.00 0.00 3.86
31 32 5.792712 ACTAATTGTATATGGGGAGCCTGAT 59.207 40.000 0.00 0.00 0.00 2.90
32 33 4.581309 ATTGTATATGGGGAGCCTGATG 57.419 45.455 0.00 0.00 0.00 3.07
33 34 2.990195 TGTATATGGGGAGCCTGATGT 58.010 47.619 0.00 0.00 0.00 3.06
34 35 3.326521 TGTATATGGGGAGCCTGATGTT 58.673 45.455 0.00 0.00 0.00 2.71
35 36 3.721575 TGTATATGGGGAGCCTGATGTTT 59.278 43.478 0.00 0.00 0.00 2.83
36 37 4.910913 TGTATATGGGGAGCCTGATGTTTA 59.089 41.667 0.00 0.00 0.00 2.01
37 38 5.551583 TGTATATGGGGAGCCTGATGTTTAT 59.448 40.000 0.00 0.00 0.00 1.40
38 39 6.733334 TGTATATGGGGAGCCTGATGTTTATA 59.267 38.462 0.00 0.00 0.00 0.98
39 40 6.718593 ATATGGGGAGCCTGATGTTTATAA 57.281 37.500 0.00 0.00 0.00 0.98
40 41 4.871871 TGGGGAGCCTGATGTTTATAAA 57.128 40.909 0.00 0.00 0.00 1.40
41 42 4.792068 TGGGGAGCCTGATGTTTATAAAG 58.208 43.478 0.00 0.00 0.00 1.85
42 43 4.229582 TGGGGAGCCTGATGTTTATAAAGT 59.770 41.667 0.00 0.00 0.00 2.66
43 44 5.201243 GGGGAGCCTGATGTTTATAAAGTT 58.799 41.667 0.00 0.00 0.00 2.66
44 45 5.067805 GGGGAGCCTGATGTTTATAAAGTTG 59.932 44.000 0.00 0.00 0.00 3.16
45 46 5.885912 GGGAGCCTGATGTTTATAAAGTTGA 59.114 40.000 0.00 0.00 0.00 3.18
46 47 6.547510 GGGAGCCTGATGTTTATAAAGTTGAT 59.452 38.462 0.00 0.00 0.00 2.57
47 48 7.719633 GGGAGCCTGATGTTTATAAAGTTGATA 59.280 37.037 0.00 0.00 0.00 2.15
48 49 8.778358 GGAGCCTGATGTTTATAAAGTTGATAG 58.222 37.037 0.00 0.00 0.00 2.08
49 50 9.331282 GAGCCTGATGTTTATAAAGTTGATAGT 57.669 33.333 0.00 0.00 0.00 2.12
50 51 9.113838 AGCCTGATGTTTATAAAGTTGATAGTG 57.886 33.333 0.00 0.00 0.00 2.74
51 52 7.857885 GCCTGATGTTTATAAAGTTGATAGTGC 59.142 37.037 0.00 0.00 0.00 4.40
52 53 8.345565 CCTGATGTTTATAAAGTTGATAGTGCC 58.654 37.037 0.00 0.00 0.00 5.01
53 54 9.113838 CTGATGTTTATAAAGTTGATAGTGCCT 57.886 33.333 0.00 0.00 0.00 4.75
57 58 9.378551 TGTTTATAAAGTTGATAGTGCCTACTG 57.621 33.333 0.00 0.00 37.78 2.74
58 59 8.336080 GTTTATAAAGTTGATAGTGCCTACTGC 58.664 37.037 0.00 0.00 37.78 4.40
59 60 2.586258 AGTTGATAGTGCCTACTGCG 57.414 50.000 0.00 0.00 45.60 5.18
60 61 2.100197 AGTTGATAGTGCCTACTGCGA 58.900 47.619 0.00 0.00 45.60 5.10
61 62 2.695666 AGTTGATAGTGCCTACTGCGAT 59.304 45.455 0.00 0.00 45.60 4.58
62 63 3.889538 AGTTGATAGTGCCTACTGCGATA 59.110 43.478 0.00 0.00 45.60 2.92
63 64 4.022762 AGTTGATAGTGCCTACTGCGATAG 60.023 45.833 0.00 0.00 45.60 2.08
82 83 7.660735 CGATAGCAGAACATTTCAAAATCTG 57.339 36.000 6.59 6.59 0.00 2.90
83 84 7.466805 CGATAGCAGAACATTTCAAAATCTGA 58.533 34.615 12.66 0.00 0.00 3.27
84 85 7.964559 CGATAGCAGAACATTTCAAAATCTGAA 59.035 33.333 12.66 3.46 42.48 3.02
96 97 7.593875 TTCAAAATCTGAAAACACAAACAGG 57.406 32.000 0.00 0.00 41.21 4.00
97 98 6.105333 TCAAAATCTGAAAACACAAACAGGG 58.895 36.000 0.00 0.00 0.00 4.45
98 99 5.930837 AAATCTGAAAACACAAACAGGGA 57.069 34.783 0.00 0.00 0.00 4.20
99 100 4.918810 ATCTGAAAACACAAACAGGGAC 57.081 40.909 0.00 0.00 0.00 4.46
100 101 3.020984 TCTGAAAACACAAACAGGGACC 58.979 45.455 0.00 0.00 0.00 4.46
101 102 2.757868 CTGAAAACACAAACAGGGACCA 59.242 45.455 0.00 0.00 0.00 4.02
102 103 2.757868 TGAAAACACAAACAGGGACCAG 59.242 45.455 0.00 0.00 0.00 4.00
103 104 1.775385 AAACACAAACAGGGACCAGG 58.225 50.000 0.00 0.00 0.00 4.45
104 105 0.923358 AACACAAACAGGGACCAGGA 59.077 50.000 0.00 0.00 0.00 3.86
105 106 1.149101 ACACAAACAGGGACCAGGAT 58.851 50.000 0.00 0.00 0.00 3.24
106 107 1.073923 ACACAAACAGGGACCAGGATC 59.926 52.381 0.00 0.00 0.00 3.36
107 108 1.352352 CACAAACAGGGACCAGGATCT 59.648 52.381 0.00 0.00 0.00 2.75
108 109 1.630878 ACAAACAGGGACCAGGATCTC 59.369 52.381 0.00 0.00 0.00 2.75
109 110 1.912043 CAAACAGGGACCAGGATCTCT 59.088 52.381 0.00 0.00 0.00 3.10
110 111 2.307098 CAAACAGGGACCAGGATCTCTT 59.693 50.000 0.00 0.00 0.00 2.85
111 112 1.872773 ACAGGGACCAGGATCTCTTC 58.127 55.000 0.00 0.00 0.00 2.87
112 113 1.364328 ACAGGGACCAGGATCTCTTCT 59.636 52.381 0.00 0.00 0.00 2.85
113 114 2.587777 ACAGGGACCAGGATCTCTTCTA 59.412 50.000 0.00 0.00 0.00 2.10
114 115 3.230134 CAGGGACCAGGATCTCTTCTAG 58.770 54.545 0.00 0.00 0.00 2.43
115 116 2.178984 AGGGACCAGGATCTCTTCTAGG 59.821 54.545 0.00 0.00 0.00 3.02
116 117 2.604139 GGACCAGGATCTCTTCTAGGG 58.396 57.143 0.00 0.00 0.00 3.53
117 118 2.090999 GGACCAGGATCTCTTCTAGGGT 60.091 54.545 0.00 0.00 0.00 4.34
118 119 2.962421 GACCAGGATCTCTTCTAGGGTG 59.038 54.545 0.00 0.00 0.00 4.61
119 120 2.316372 ACCAGGATCTCTTCTAGGGTGT 59.684 50.000 0.00 0.00 0.00 4.16
120 121 2.962421 CCAGGATCTCTTCTAGGGTGTC 59.038 54.545 0.00 0.00 0.00 3.67
121 122 3.628513 CCAGGATCTCTTCTAGGGTGTCA 60.629 52.174 0.00 0.00 0.00 3.58
122 123 4.026744 CAGGATCTCTTCTAGGGTGTCAA 58.973 47.826 0.00 0.00 0.00 3.18
123 124 4.467795 CAGGATCTCTTCTAGGGTGTCAAA 59.532 45.833 0.00 0.00 0.00 2.69
124 125 5.130145 CAGGATCTCTTCTAGGGTGTCAAAT 59.870 44.000 0.00 0.00 0.00 2.32
125 126 5.365314 AGGATCTCTTCTAGGGTGTCAAATC 59.635 44.000 0.00 0.00 0.00 2.17
126 127 5.365314 GGATCTCTTCTAGGGTGTCAAATCT 59.635 44.000 0.00 0.00 0.00 2.40
127 128 6.126911 GGATCTCTTCTAGGGTGTCAAATCTT 60.127 42.308 0.00 0.00 0.00 2.40
137 138 9.177608 CTAGGGTGTCAAATCTTCATTTATGAA 57.822 33.333 5.16 5.16 43.94 2.57
144 145 8.522830 GTCAAATCTTCATTTATGAAAGTGGGA 58.477 33.333 6.61 1.36 45.26 4.37
145 146 8.522830 TCAAATCTTCATTTATGAAAGTGGGAC 58.477 33.333 6.61 0.00 45.26 4.46
146 147 7.410120 AATCTTCATTTATGAAAGTGGGACC 57.590 36.000 6.61 0.00 45.26 4.46
147 148 5.886609 TCTTCATTTATGAAAGTGGGACCA 58.113 37.500 6.61 0.00 45.26 4.02
162 163 0.179089 GACCATGCGTCAGCTCAGAT 60.179 55.000 8.84 0.00 45.42 2.90
168 169 3.592898 TGCGTCAGCTCAGATTTTCTA 57.407 42.857 0.00 0.00 45.42 2.10
171 172 4.152402 TGCGTCAGCTCAGATTTTCTAAAC 59.848 41.667 0.00 0.00 45.42 2.01
174 175 4.396478 GTCAGCTCAGATTTTCTAAACCCC 59.604 45.833 0.00 0.00 0.00 4.95
217 218 8.747538 ACATTTAAAGAACACCATATACTCCC 57.252 34.615 0.00 0.00 0.00 4.30
218 219 8.557450 ACATTTAAAGAACACCATATACTCCCT 58.443 33.333 0.00 0.00 0.00 4.20
219 220 9.057089 CATTTAAAGAACACCATATACTCCCTC 57.943 37.037 0.00 0.00 0.00 4.30
220 221 5.632034 AAAGAACACCATATACTCCCTCC 57.368 43.478 0.00 0.00 0.00 4.30
221 222 3.231818 AGAACACCATATACTCCCTCCG 58.768 50.000 0.00 0.00 0.00 4.63
222 223 2.769602 ACACCATATACTCCCTCCGT 57.230 50.000 0.00 0.00 0.00 4.69
223 224 2.595238 ACACCATATACTCCCTCCGTC 58.405 52.381 0.00 0.00 0.00 4.79
224 225 1.893801 CACCATATACTCCCTCCGTCC 59.106 57.143 0.00 0.00 0.00 4.79
225 226 1.174783 CCATATACTCCCTCCGTCCG 58.825 60.000 0.00 0.00 0.00 4.79
226 227 1.174783 CATATACTCCCTCCGTCCGG 58.825 60.000 0.00 0.00 0.00 5.14
227 228 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
228 229 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
229 230 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
230 231 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
231 232 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
232 233 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
233 234 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
234 235 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
235 236 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
236 237 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
237 238 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
238 239 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
239 240 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.00 37.50 4.20
240 241 2.598589 CGTCCGGAAATACTTGTCGAA 58.401 47.619 5.23 0.00 0.00 3.71
241 242 2.597305 CGTCCGGAAATACTTGTCGAAG 59.403 50.000 5.23 0.00 35.07 3.79
242 243 3.671433 CGTCCGGAAATACTTGTCGAAGA 60.671 47.826 5.23 0.00 32.98 2.87
243 244 4.240096 GTCCGGAAATACTTGTCGAAGAA 58.760 43.478 5.23 0.00 39.69 2.52
244 245 4.687483 GTCCGGAAATACTTGTCGAAGAAA 59.313 41.667 5.23 0.00 39.69 2.52
245 246 5.350640 GTCCGGAAATACTTGTCGAAGAAAT 59.649 40.000 5.23 0.00 39.69 2.17
246 247 5.350365 TCCGGAAATACTTGTCGAAGAAATG 59.650 40.000 0.00 0.00 39.69 2.32
247 248 5.022021 CGGAAATACTTGTCGAAGAAATGC 58.978 41.667 0.00 0.00 39.69 3.56
248 249 5.390461 CGGAAATACTTGTCGAAGAAATGCA 60.390 40.000 0.00 0.00 39.69 3.96
249 250 6.555315 GGAAATACTTGTCGAAGAAATGCAT 58.445 36.000 0.00 0.00 39.69 3.96
250 251 7.465379 CGGAAATACTTGTCGAAGAAATGCATA 60.465 37.037 0.00 0.00 39.69 3.14
251 252 8.181573 GGAAATACTTGTCGAAGAAATGCATAA 58.818 33.333 0.00 0.00 39.69 1.90
252 253 9.554724 GAAATACTTGTCGAAGAAATGCATAAA 57.445 29.630 0.00 0.00 39.69 1.40
253 254 9.906660 AAATACTTGTCGAAGAAATGCATAAAA 57.093 25.926 0.00 0.00 39.69 1.52
254 255 9.906660 AATACTTGTCGAAGAAATGCATAAAAA 57.093 25.926 0.00 0.00 39.69 1.94
256 257 8.231304 ACTTGTCGAAGAAATGCATAAAAATG 57.769 30.769 0.00 0.00 39.69 2.32
257 258 7.329226 ACTTGTCGAAGAAATGCATAAAAATGG 59.671 33.333 0.00 0.00 39.69 3.16
258 259 6.918626 TGTCGAAGAAATGCATAAAAATGGA 58.081 32.000 0.00 0.00 39.69 3.41
259 260 7.546358 TGTCGAAGAAATGCATAAAAATGGAT 58.454 30.769 0.00 0.00 39.69 3.41
260 261 7.488792 TGTCGAAGAAATGCATAAAAATGGATG 59.511 33.333 0.00 0.00 39.69 3.51
261 262 7.489113 GTCGAAGAAATGCATAAAAATGGATGT 59.511 33.333 0.00 0.00 39.69 3.06
262 263 8.681806 TCGAAGAAATGCATAAAAATGGATGTA 58.318 29.630 0.00 0.00 32.82 2.29
263 264 9.467258 CGAAGAAATGCATAAAAATGGATGTAT 57.533 29.630 0.00 0.00 32.82 2.29
271 272 9.851686 TGCATAAAAATGGATGTATCTAGAACT 57.148 29.630 0.00 0.00 0.00 3.01
298 299 8.423906 AAATACATCTAGATACATCCGTTCCT 57.576 34.615 4.54 0.00 0.00 3.36
299 300 5.968528 ACATCTAGATACATCCGTTCCTC 57.031 43.478 4.54 0.00 0.00 3.71
300 301 5.636123 ACATCTAGATACATCCGTTCCTCT 58.364 41.667 4.54 0.00 0.00 3.69
301 302 5.475220 ACATCTAGATACATCCGTTCCTCTG 59.525 44.000 4.54 0.00 0.00 3.35
302 303 5.306114 TCTAGATACATCCGTTCCTCTGA 57.694 43.478 0.00 0.00 0.00 3.27
303 304 5.064558 TCTAGATACATCCGTTCCTCTGAC 58.935 45.833 0.00 0.00 0.00 3.51
304 305 3.632333 AGATACATCCGTTCCTCTGACA 58.368 45.455 0.00 0.00 0.00 3.58
305 306 4.023980 AGATACATCCGTTCCTCTGACAA 58.976 43.478 0.00 0.00 0.00 3.18
306 307 2.751166 ACATCCGTTCCTCTGACAAG 57.249 50.000 0.00 0.00 0.00 3.16
307 308 1.971357 ACATCCGTTCCTCTGACAAGT 59.029 47.619 0.00 0.00 0.00 3.16
308 309 3.162666 ACATCCGTTCCTCTGACAAGTA 58.837 45.455 0.00 0.00 0.00 2.24
309 310 3.769844 ACATCCGTTCCTCTGACAAGTAT 59.230 43.478 0.00 0.00 0.00 2.12
310 311 4.223032 ACATCCGTTCCTCTGACAAGTATT 59.777 41.667 0.00 0.00 0.00 1.89
311 312 4.884668 TCCGTTCCTCTGACAAGTATTT 57.115 40.909 0.00 0.00 0.00 1.40
312 313 4.817517 TCCGTTCCTCTGACAAGTATTTC 58.182 43.478 0.00 0.00 0.00 2.17
313 314 3.933332 CCGTTCCTCTGACAAGTATTTCC 59.067 47.826 0.00 0.00 0.00 3.13
314 315 3.612860 CGTTCCTCTGACAAGTATTTCCG 59.387 47.826 0.00 0.00 0.00 4.30
315 316 3.887621 TCCTCTGACAAGTATTTCCGG 57.112 47.619 0.00 0.00 0.00 5.14
316 317 3.437213 TCCTCTGACAAGTATTTCCGGA 58.563 45.455 0.00 0.00 0.00 5.14
317 318 3.194968 TCCTCTGACAAGTATTTCCGGAC 59.805 47.826 1.83 0.00 0.00 4.79
318 319 3.179830 CTCTGACAAGTATTTCCGGACG 58.820 50.000 1.83 0.00 0.00 4.79
319 320 2.094390 TCTGACAAGTATTTCCGGACGG 60.094 50.000 1.83 3.96 0.00 4.79
320 321 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
321 322 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
322 323 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
323 324 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
324 325 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
325 326 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
326 327 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
327 328 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
328 329 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
337 338 2.170607 ACGGAGGGAGTACATTGAATGG 59.829 50.000 10.27 0.00 33.60 3.16
350 351 3.657015 TTGAATGGCGCAATTTCAAGA 57.343 38.095 20.67 6.90 35.16 3.02
372 373 3.243839 ACAATTGAATGGCTGTGACAACC 60.244 43.478 13.59 0.00 0.00 3.77
436 438 9.979578 TTAGTAACCGTAGTTGTTGATTTAGAA 57.020 29.630 0.00 0.00 36.68 2.10
452 454 8.143673 TGATTTAGAAGCTCTAGATATGGCAT 57.856 34.615 4.88 4.88 29.56 4.40
453 455 8.039538 TGATTTAGAAGCTCTAGATATGGCATG 58.960 37.037 10.98 0.00 29.56 4.06
468 470 3.979911 TGGCATGGAGGTTGATTTGTAT 58.020 40.909 0.00 0.00 0.00 2.29
472 474 4.440525 GCATGGAGGTTGATTTGTATGTGG 60.441 45.833 0.00 0.00 0.00 4.17
477 479 5.885912 GGAGGTTGATTTGTATGTGGTACAT 59.114 40.000 0.00 0.00 44.52 2.29
528 530 1.307097 GAGCATCTCATCAAGTGGCC 58.693 55.000 0.00 0.00 0.00 5.36
545 547 0.885196 GCCACTAACGCCAATTCCAA 59.115 50.000 0.00 0.00 0.00 3.53
1131 1185 6.157994 TGACACCTAATTCAAATACTAGGGCT 59.842 38.462 0.00 0.00 36.08 5.19
1132 1186 6.357367 ACACCTAATTCAAATACTAGGGCTG 58.643 40.000 0.00 0.44 36.08 4.85
1133 1187 6.069615 ACACCTAATTCAAATACTAGGGCTGT 60.070 38.462 0.00 0.89 36.08 4.40
1134 1188 6.260936 CACCTAATTCAAATACTAGGGCTGTG 59.739 42.308 0.00 0.00 36.08 3.66
1135 1189 6.069615 ACCTAATTCAAATACTAGGGCTGTGT 60.070 38.462 0.00 0.00 36.08 3.72
1136 1190 6.260936 CCTAATTCAAATACTAGGGCTGTGTG 59.739 42.308 0.00 0.00 0.00 3.82
1137 1191 4.634012 TTCAAATACTAGGGCTGTGTGT 57.366 40.909 0.00 0.00 0.00 3.72
1138 1192 3.937814 TCAAATACTAGGGCTGTGTGTG 58.062 45.455 0.00 0.00 0.00 3.82
1139 1193 3.326588 TCAAATACTAGGGCTGTGTGTGT 59.673 43.478 0.00 0.00 0.00 3.72
1140 1194 3.334583 AATACTAGGGCTGTGTGTGTG 57.665 47.619 0.00 0.00 0.00 3.82
1141 1195 1.712056 TACTAGGGCTGTGTGTGTGT 58.288 50.000 0.00 0.00 0.00 3.72
1142 1196 0.106708 ACTAGGGCTGTGTGTGTGTG 59.893 55.000 0.00 0.00 0.00 3.82
1143 1197 0.106708 CTAGGGCTGTGTGTGTGTGT 59.893 55.000 0.00 0.00 0.00 3.72
1144 1198 0.179059 TAGGGCTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
1145 1199 1.748879 GGGCTGTGTGTGTGTGTGT 60.749 57.895 0.00 0.00 0.00 3.72
1146 1200 1.429021 GGCTGTGTGTGTGTGTGTG 59.571 57.895 0.00 0.00 0.00 3.82
1147 1201 1.305219 GGCTGTGTGTGTGTGTGTGT 61.305 55.000 0.00 0.00 0.00 3.72
1148 1202 0.179192 GCTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
1149 1203 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
1150 1204 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1151 1205 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1152 1206 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1162 1216 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1164 1218 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
1166 1220 2.028930 TGTGTGTGTGTGTGTGTGTCTA 60.029 45.455 0.00 0.00 0.00 2.59
1209 1263 2.484264 GGCACAACTAGCTTTCATCGTT 59.516 45.455 0.00 0.00 0.00 3.85
1227 1281 7.586747 TCATCGTTGTAGGAAATTTTTACCAC 58.413 34.615 9.82 8.57 0.00 4.16
1370 1424 7.552458 AAAATGAACCTTTTTCCATGTGTTC 57.448 32.000 0.00 0.00 34.25 3.18
1543 1599 7.824779 AGAATCTAGTGGTCCAAGTTATGTTTC 59.175 37.037 0.00 0.00 0.00 2.78
1552 1608 4.083003 TCCAAGTTATGTTTCGAACCATGC 60.083 41.667 17.47 10.36 0.00 4.06
1568 1624 3.393106 GCCCATGTGCAAAGGGGG 61.393 66.667 27.68 19.17 43.04 5.40
1609 1667 3.913089 TGGTAGCATCATATGTAGTGCG 58.087 45.455 17.94 0.00 42.18 5.34
1715 1773 6.325028 TGTGACCTCTTCTATATCCAGGAAAG 59.675 42.308 0.00 0.00 0.00 2.62
1721 1779 7.676043 CCTCTTCTATATCCAGGAAAGTCCATA 59.324 40.741 0.00 0.00 39.61 2.74
1868 1938 1.542767 CGGCAGAATCTGGAGCATGAT 60.543 52.381 12.66 0.00 31.21 2.45
1877 1947 6.673097 AGAATCTGGAGCATGATATCACCTAT 59.327 38.462 7.78 0.92 0.00 2.57
1959 2047 0.902516 GAGTGGACCCAGCAGAGACT 60.903 60.000 0.00 0.00 0.00 3.24
2215 2306 1.903877 GCTGCTGGCACCTCCTCTTA 61.904 60.000 0.00 0.00 41.35 2.10
2266 2366 0.246360 ACGATGACACAGATGGCGAA 59.754 50.000 0.00 0.00 36.14 4.70
2442 2545 4.522789 ACCACACAATTGAGAACCAATACC 59.477 41.667 13.59 0.00 44.28 2.73
2478 2581 2.033757 CTGCAGCAGAGCAAGGGT 59.966 61.111 18.42 0.00 45.13 4.34
2527 2639 1.304713 AGCAACTTGGCATCCCCAG 60.305 57.895 0.00 0.00 46.39 4.45
2654 2773 7.581213 AATTTTGTCAACTCCATCTGTGTTA 57.419 32.000 0.00 0.00 0.00 2.41
2661 2780 4.377839 ACTCCATCTGTGTTAGACGATG 57.622 45.455 0.00 7.12 38.49 3.84
2665 2784 3.859961 CCATCTGTGTTAGACGATGTGAC 59.140 47.826 11.03 0.00 38.49 3.67
2751 4443 3.418047 TCACTAGTGTCATCTTCGTGGA 58.582 45.455 21.99 0.00 0.00 4.02
2816 4517 9.638239 GATATCTCTCCATGTTAATTCTGTCTC 57.362 37.037 0.00 0.00 0.00 3.36
2822 4523 8.270030 TCTCCATGTTAATTCTGTCTCATCATT 58.730 33.333 0.00 0.00 0.00 2.57
3191 4901 1.066908 ACGTGAAAACTGGGCAACATG 59.933 47.619 0.00 0.00 39.74 3.21
3351 5061 3.444388 GTCGTACAGTCAGGAGAGGAAAT 59.556 47.826 0.00 0.00 0.00 2.17
3372 5082 3.684103 TTAATAAGGAAATGGTGCGCG 57.316 42.857 0.00 0.00 0.00 6.86
3390 5100 2.022238 GCGGAAGGGTTTATCCAAGGG 61.022 57.143 0.00 0.00 38.11 3.95
3415 5125 8.486210 GGGATTATATGTGTAATGCTCTGGATA 58.514 37.037 2.23 0.00 34.15 2.59
3684 5406 5.071923 TGATCTATCTCTTGTCCGGTCTCTA 59.928 44.000 0.00 0.00 0.00 2.43
4132 5857 2.812591 CTCATGGAGCATATGAAGCACC 59.187 50.000 6.97 0.00 42.19 5.01
4437 7362 2.910319 TGTTACCATGCTAGGTGGTCTT 59.090 45.455 10.40 0.00 46.79 3.01
4623 7548 5.297547 GTGGTTGAAGTCATGACTGAACTA 58.702 41.667 30.99 27.12 41.58 2.24
4809 7734 1.502527 AAAAGCACCCCCGATACCCA 61.503 55.000 0.00 0.00 0.00 4.51
4831 7756 6.329496 CCAAAGCTCTTGTTTGTTAAGACAA 58.671 36.000 0.00 0.00 43.73 3.18
5211 9047 2.287584 TGAACAGGGGATGGAAGGAAT 58.712 47.619 0.00 0.00 0.00 3.01
5212 9048 2.025037 TGAACAGGGGATGGAAGGAATG 60.025 50.000 0.00 0.00 0.00 2.67
5213 9049 0.929244 ACAGGGGATGGAAGGAATGG 59.071 55.000 0.00 0.00 0.00 3.16
5214 9050 0.929244 CAGGGGATGGAAGGAATGGT 59.071 55.000 0.00 0.00 0.00 3.55
5215 9051 2.135189 CAGGGGATGGAAGGAATGGTA 58.865 52.381 0.00 0.00 0.00 3.25
5216 9052 2.107204 CAGGGGATGGAAGGAATGGTAG 59.893 54.545 0.00 0.00 0.00 3.18
5217 9053 1.425448 GGGGATGGAAGGAATGGTAGG 59.575 57.143 0.00 0.00 0.00 3.18
5218 9054 2.136026 GGGATGGAAGGAATGGTAGGT 58.864 52.381 0.00 0.00 0.00 3.08
5219 9055 2.514160 GGGATGGAAGGAATGGTAGGTT 59.486 50.000 0.00 0.00 0.00 3.50
5220 9056 3.052869 GGGATGGAAGGAATGGTAGGTTT 60.053 47.826 0.00 0.00 0.00 3.27
5221 9057 4.167307 GGGATGGAAGGAATGGTAGGTTTA 59.833 45.833 0.00 0.00 0.00 2.01
5222 9058 5.377478 GGATGGAAGGAATGGTAGGTTTAG 58.623 45.833 0.00 0.00 0.00 1.85
5223 9059 5.132144 GGATGGAAGGAATGGTAGGTTTAGA 59.868 44.000 0.00 0.00 0.00 2.10
5224 9060 6.183361 GGATGGAAGGAATGGTAGGTTTAGAT 60.183 42.308 0.00 0.00 0.00 1.98
5225 9061 6.001449 TGGAAGGAATGGTAGGTTTAGATG 57.999 41.667 0.00 0.00 0.00 2.90
5226 9062 5.729229 TGGAAGGAATGGTAGGTTTAGATGA 59.271 40.000 0.00 0.00 0.00 2.92
5227 9063 6.389869 TGGAAGGAATGGTAGGTTTAGATGAT 59.610 38.462 0.00 0.00 0.00 2.45
5228 9064 6.937465 GGAAGGAATGGTAGGTTTAGATGATC 59.063 42.308 0.00 0.00 0.00 2.92
5229 9065 7.420214 GGAAGGAATGGTAGGTTTAGATGATCA 60.420 40.741 0.00 0.00 0.00 2.92
5230 9066 7.072263 AGGAATGGTAGGTTTAGATGATCAG 57.928 40.000 0.09 0.00 0.00 2.90
5231 9067 5.703130 GGAATGGTAGGTTTAGATGATCAGC 59.297 44.000 1.78 1.78 0.00 4.26
5232 9068 5.894298 ATGGTAGGTTTAGATGATCAGCA 57.106 39.130 14.38 0.00 0.00 4.41
5233 9069 5.282055 TGGTAGGTTTAGATGATCAGCAG 57.718 43.478 14.38 0.00 0.00 4.24
5234 9070 4.962362 TGGTAGGTTTAGATGATCAGCAGA 59.038 41.667 14.38 0.00 0.00 4.26
5235 9071 5.604231 TGGTAGGTTTAGATGATCAGCAGAT 59.396 40.000 14.38 0.00 37.13 2.90
5236 9072 5.931146 GGTAGGTTTAGATGATCAGCAGATG 59.069 44.000 14.38 0.00 33.72 2.90
5237 9073 4.970711 AGGTTTAGATGATCAGCAGATGG 58.029 43.478 14.38 0.00 33.72 3.51
5238 9074 4.657504 AGGTTTAGATGATCAGCAGATGGA 59.342 41.667 14.38 0.00 33.72 3.41
5239 9075 5.131642 AGGTTTAGATGATCAGCAGATGGAA 59.868 40.000 14.38 0.00 33.72 3.53
5240 9076 5.469421 GGTTTAGATGATCAGCAGATGGAAG 59.531 44.000 14.38 0.00 33.72 3.46
5241 9077 6.286758 GTTTAGATGATCAGCAGATGGAAGA 58.713 40.000 14.38 0.00 33.72 2.87
5242 9078 6.683312 TTAGATGATCAGCAGATGGAAGAT 57.317 37.500 14.38 0.00 33.72 2.40
5243 9079 4.900684 AGATGATCAGCAGATGGAAGATG 58.099 43.478 14.38 0.00 33.72 2.90
5244 9080 4.348461 AGATGATCAGCAGATGGAAGATGT 59.652 41.667 14.38 0.00 33.72 3.06
5245 9081 4.069300 TGATCAGCAGATGGAAGATGTC 57.931 45.455 0.00 0.00 33.72 3.06
5246 9082 3.453353 TGATCAGCAGATGGAAGATGTCA 59.547 43.478 0.00 0.00 33.72 3.58
5247 9083 3.257469 TCAGCAGATGGAAGATGTCAC 57.743 47.619 0.00 0.00 0.00 3.67
5248 9084 2.836372 TCAGCAGATGGAAGATGTCACT 59.164 45.455 0.00 0.00 0.00 3.41
5249 9085 3.118847 TCAGCAGATGGAAGATGTCACTC 60.119 47.826 0.00 0.00 0.00 3.51
5250 9086 2.170187 AGCAGATGGAAGATGTCACTCC 59.830 50.000 0.00 0.00 0.00 3.85
5251 9087 2.819115 CAGATGGAAGATGTCACTCCG 58.181 52.381 0.00 0.00 0.00 4.63
5252 9088 2.167281 CAGATGGAAGATGTCACTCCGT 59.833 50.000 0.00 0.00 0.00 4.69
5253 9089 2.428890 AGATGGAAGATGTCACTCCGTC 59.571 50.000 12.20 12.20 36.90 4.79
5254 9090 1.924731 TGGAAGATGTCACTCCGTCT 58.075 50.000 0.00 0.00 32.03 4.18
5255 9091 3.081710 TGGAAGATGTCACTCCGTCTA 57.918 47.619 0.00 0.00 30.53 2.59
5256 9092 2.753452 TGGAAGATGTCACTCCGTCTAC 59.247 50.000 0.00 0.00 30.53 2.59
5257 9093 3.018149 GGAAGATGTCACTCCGTCTACT 58.982 50.000 0.00 0.00 30.53 2.57
5258 9094 3.181495 GGAAGATGTCACTCCGTCTACTG 60.181 52.174 0.00 0.00 30.53 2.74
5259 9095 3.351794 AGATGTCACTCCGTCTACTGA 57.648 47.619 0.00 0.00 0.00 3.41
5260 9096 3.892284 AGATGTCACTCCGTCTACTGAT 58.108 45.455 0.00 0.00 0.00 2.90
5261 9097 3.880490 AGATGTCACTCCGTCTACTGATC 59.120 47.826 0.00 0.00 0.00 2.92
5262 9098 3.067684 TGTCACTCCGTCTACTGATCA 57.932 47.619 0.00 0.00 0.00 2.92
5263 9099 3.010420 TGTCACTCCGTCTACTGATCAG 58.990 50.000 21.37 21.37 0.00 2.90
5264 9100 2.356382 GTCACTCCGTCTACTGATCAGG 59.644 54.545 26.08 9.99 0.00 3.86
5265 9101 1.066303 CACTCCGTCTACTGATCAGGC 59.934 57.143 26.08 12.13 0.00 4.85
5266 9102 1.064314 ACTCCGTCTACTGATCAGGCT 60.064 52.381 26.08 9.29 0.00 4.58
5267 9103 1.336440 CTCCGTCTACTGATCAGGCTG 59.664 57.143 26.08 8.58 0.00 4.85
5268 9104 1.064685 TCCGTCTACTGATCAGGCTGA 60.065 52.381 26.08 21.19 0.00 4.26
5269 9105 1.959985 CCGTCTACTGATCAGGCTGAT 59.040 52.381 29.19 29.19 40.34 2.90
5280 9116 3.777106 TCAGGCTGATCAAAGTCTTGT 57.223 42.857 14.43 0.00 33.94 3.16
5281 9117 4.890158 TCAGGCTGATCAAAGTCTTGTA 57.110 40.909 14.43 0.00 33.94 2.41
5282 9118 4.569943 TCAGGCTGATCAAAGTCTTGTAC 58.430 43.478 14.43 0.00 33.94 2.90
5283 9119 4.284490 TCAGGCTGATCAAAGTCTTGTACT 59.716 41.667 14.43 0.00 41.49 2.73
5284 9120 6.521427 ATCAGGCTGATCAAAGTCTTGTACTT 60.521 38.462 24.01 0.00 40.71 2.24
5285 9121 7.961457 ATCAGGCTGATCAAAGTCTTGTACTTT 60.961 37.037 24.01 0.00 42.94 2.66
5379 9293 1.600916 GGGTGAAGCGCAAGAACCT 60.601 57.895 11.47 0.00 43.02 3.50
5437 9363 9.462606 ACTATCCTAAATTTTCCGATGTTTCTT 57.537 29.630 0.00 0.00 0.00 2.52
5684 11164 7.487829 TCATGTTTCTTTTAACTTTCTGTGCAC 59.512 33.333 10.75 10.75 0.00 4.57
5713 11193 6.486993 GGTTCTGAAGTTTACTGGAGATGTTT 59.513 38.462 0.00 0.00 0.00 2.83
5775 11255 9.601810 TGGACTATATATGTGGATCTACAAAGT 57.398 33.333 16.42 13.38 33.69 2.66
5776 11256 9.862371 GGACTATATATGTGGATCTACAAAGTG 57.138 37.037 16.42 7.24 33.69 3.16
5777 11257 9.360093 GACTATATATGTGGATCTACAAAGTGC 57.640 37.037 16.42 6.08 33.69 4.40
5778 11258 9.094578 ACTATATATGTGGATCTACAAAGTGCT 57.905 33.333 16.42 0.97 33.69 4.40
5795 11278 9.810545 ACAAAGTGCTCTCTCTTTAGAATATAC 57.189 33.333 0.00 0.00 35.12 1.47
5799 11282 9.854668 AGTGCTCTCTCTTTAGAATATACTGTA 57.145 33.333 0.00 0.00 0.00 2.74
5840 11326 5.553692 ACGCGTTTTTAATTGTCACATTG 57.446 34.783 5.58 0.00 0.00 2.82
5848 11334 9.482627 GTTTTTAATTGTCACATTGGGTTATCA 57.517 29.630 0.00 0.00 0.00 2.15
5930 11417 6.244552 TGCTATCTCTGATGGAAATTGAGT 57.755 37.500 0.00 0.00 0.00 3.41
5956 11443 2.446666 CCATGGAATAAGTGGATGGGGA 59.553 50.000 5.56 0.00 34.94 4.81
5987 11474 2.562635 CTCAGTTGGCAGATCCATGAG 58.437 52.381 0.00 1.56 46.04 2.90
6012 11502 4.980573 TGTTACTGTTTTGCCTGGAGTAT 58.019 39.130 0.00 0.00 0.00 2.12
6063 11553 0.899019 GGGAGTCAGGACAGGACTTC 59.101 60.000 1.84 0.00 45.21 3.01
6077 11567 1.803555 GGACTTCAGTTTGCTCTGAGC 59.196 52.381 22.38 22.38 43.85 4.26
6198 11784 4.789075 CATGTGCTGCCGCTTGCC 62.789 66.667 0.70 0.55 40.16 4.52
6213 11799 2.435234 GCCGCGACACCATACCAA 60.435 61.111 8.23 0.00 0.00 3.67
6240 11826 0.108329 CGGCTATGGTGAAGACGGTT 60.108 55.000 0.00 0.00 41.89 4.44
6256 11856 5.310451 AGACGGTTAAGTGCTTCCATTAAA 58.690 37.500 0.00 0.00 0.00 1.52
6281 11881 6.721571 TTCTACTTGTACTGCAACATAAGC 57.278 37.500 0.00 0.00 32.90 3.09
6341 11942 4.627467 GTGACAGAGTTCACCATGTATGTC 59.373 45.833 0.00 0.00 40.15 3.06
6347 11948 2.394930 TCACCATGTATGTCGTTGGG 57.605 50.000 0.00 0.00 0.00 4.12
6496 12109 5.553290 GCGGAGAGCTTTTCTTTTCTTAT 57.447 39.130 0.00 0.00 44.04 1.73
6497 12110 5.944013 GCGGAGAGCTTTTCTTTTCTTATT 58.056 37.500 0.00 0.00 44.04 1.40
6498 12111 6.382608 GCGGAGAGCTTTTCTTTTCTTATTT 58.617 36.000 0.00 0.00 44.04 1.40
6499 12112 6.524933 GCGGAGAGCTTTTCTTTTCTTATTTC 59.475 38.462 0.00 0.00 44.04 2.17
6500 12113 7.574030 GCGGAGAGCTTTTCTTTTCTTATTTCT 60.574 37.037 0.00 0.00 44.04 2.52
6501 12114 8.293157 CGGAGAGCTTTTCTTTTCTTATTTCTT 58.707 33.333 0.00 0.00 35.87 2.52
6526 12139 9.820725 TTTCTAATAATTTGATTTCCCATGCTG 57.179 29.630 0.00 0.00 0.00 4.41
6527 12140 7.954835 TCTAATAATTTGATTTCCCATGCTGG 58.045 34.615 0.00 0.00 37.25 4.85
6528 12141 6.564557 AATAATTTGATTTCCCATGCTGGT 57.435 33.333 0.00 0.00 35.17 4.00
6529 12142 7.673641 AATAATTTGATTTCCCATGCTGGTA 57.326 32.000 0.00 0.00 35.17 3.25
6530 12143 7.860649 ATAATTTGATTTCCCATGCTGGTAT 57.139 32.000 0.00 0.00 35.17 2.73
6531 12144 8.954834 ATAATTTGATTTCCCATGCTGGTATA 57.045 30.769 0.00 0.00 35.17 1.47
6586 12199 6.449635 TGTTAATAACTTCATGGTCATGCC 57.550 37.500 4.67 0.00 38.65 4.40
6622 12235 7.232118 AGTTTGCATGAAAGTAAGGCTAAAT 57.768 32.000 0.00 0.00 0.00 1.40
6696 12313 4.081972 TCAGAACTCAGACAGAACCTATGC 60.082 45.833 0.00 0.00 0.00 3.14
6708 12329 2.494445 CTATGCGCTGGTCACCGA 59.506 61.111 9.73 0.00 0.00 4.69
6719 12340 0.541863 GGTCACCGAAGATGGATGGT 59.458 55.000 0.00 0.00 34.29 3.55
6729 12350 2.555664 AGATGGATGGTGTTCCTGACT 58.444 47.619 0.00 0.00 36.68 3.41
6749 12370 1.071699 TGGAAGTCAGCTACAACCACC 59.928 52.381 0.00 0.00 32.97 4.61
6755 12376 0.949105 CAGCTACAACCACCGGACAC 60.949 60.000 9.46 0.00 0.00 3.67
6756 12377 1.670083 GCTACAACCACCGGACACC 60.670 63.158 9.46 0.00 0.00 4.16
6835 12509 1.658686 GACACGGGAGCTCTGACGAT 61.659 60.000 24.81 15.62 0.00 3.73
6846 12520 2.681706 CTCTGACGATGACAAGCAAGT 58.318 47.619 0.00 0.00 0.00 3.16
6862 12536 7.047271 ACAAGCAAGTAACCATGTTGAAATTT 58.953 30.769 0.00 0.00 0.00 1.82
6875 12549 6.647334 TGTTGAAATTTCCTGCAGTAATGA 57.353 33.333 15.48 0.00 0.00 2.57
6876 12550 7.048629 TGTTGAAATTTCCTGCAGTAATGAA 57.951 32.000 15.48 5.99 0.00 2.57
6901 12575 0.531974 ACCGTACCTGCAACACACTG 60.532 55.000 0.00 0.00 0.00 3.66
6936 12610 0.687354 GCAGACTTGAGTCCCTTGGA 59.313 55.000 7.50 0.00 45.85 3.53
6953 12627 1.137675 TGGAGACAATCTGATGAGCGG 59.862 52.381 0.00 0.00 37.44 5.52
6956 12630 1.202348 AGACAATCTGATGAGCGGTCG 60.202 52.381 10.46 0.00 0.00 4.79
6960 12634 1.330655 ATCTGATGAGCGGTCGGGTT 61.331 55.000 10.46 0.00 0.00 4.11
6963 12637 2.746277 ATGAGCGGTCGGGTTTGC 60.746 61.111 10.46 0.00 0.00 3.68
6981 12655 3.247424 CCCCCTGGCTGAATCTCTA 57.753 57.895 0.00 0.00 0.00 2.43
6991 12665 2.169352 GCTGAATCTCTAGCCTGTTGGA 59.831 50.000 0.00 0.00 33.89 3.53
7016 12690 1.838077 CCAGTTCCAGGGTAGGGTTAG 59.162 57.143 0.00 0.00 0.00 2.34
7024 12698 1.322538 GGGTAGGGTTAGTCGCCGAA 61.323 60.000 0.00 0.00 0.00 4.30
7105 12779 1.576421 CAAGAAACAGCCGTGGAGC 59.424 57.895 0.00 0.00 0.00 4.70
7107 12781 2.357034 GAAACAGCCGTGGAGCGA 60.357 61.111 0.00 0.00 44.77 4.93
7109 12783 3.883744 AAACAGCCGTGGAGCGAGG 62.884 63.158 0.00 0.00 44.77 4.63
7190 12882 1.301009 GGATGGGCTCGATTCCGAC 60.301 63.158 0.00 0.00 40.30 4.79
7194 12886 3.524606 GGCTCGATTCCGACGGGA 61.525 66.667 15.25 5.39 40.30 5.14
7195 12887 2.026301 GCTCGATTCCGACGGGAG 59.974 66.667 15.25 13.37 44.98 4.30
7196 12888 2.026301 CTCGATTCCGACGGGAGC 59.974 66.667 15.25 7.34 44.98 4.70
7197 12889 3.808771 CTCGATTCCGACGGGAGCG 62.809 68.421 26.53 26.53 44.98 5.03
7225 12917 4.452733 GAGGCGGCGGTAGTGCTT 62.453 66.667 9.78 0.00 34.52 3.91
7226 12918 4.452733 AGGCGGCGGTAGTGCTTC 62.453 66.667 9.78 0.00 34.52 3.86
7227 12919 4.452733 GGCGGCGGTAGTGCTTCT 62.453 66.667 9.78 0.00 34.52 2.85
7228 12920 3.188786 GCGGCGGTAGTGCTTCTG 61.189 66.667 9.78 0.00 34.52 3.02
7229 12921 2.261671 CGGCGGTAGTGCTTCTGT 59.738 61.111 0.00 0.00 34.52 3.41
7230 12922 1.805945 CGGCGGTAGTGCTTCTGTC 60.806 63.158 0.00 0.00 34.52 3.51
7231 12923 1.448013 GGCGGTAGTGCTTCTGTCC 60.448 63.158 0.00 0.00 34.52 4.02
7232 12924 1.592223 GCGGTAGTGCTTCTGTCCT 59.408 57.895 0.00 0.00 0.00 3.85
7233 12925 0.037232 GCGGTAGTGCTTCTGTCCTT 60.037 55.000 0.00 0.00 0.00 3.36
7234 12926 1.608283 GCGGTAGTGCTTCTGTCCTTT 60.608 52.381 0.00 0.00 0.00 3.11
7235 12927 2.069273 CGGTAGTGCTTCTGTCCTTTG 58.931 52.381 0.00 0.00 0.00 2.77
7236 12928 2.427506 GGTAGTGCTTCTGTCCTTTGG 58.572 52.381 0.00 0.00 0.00 3.28
7237 12929 2.427506 GTAGTGCTTCTGTCCTTTGGG 58.572 52.381 0.00 0.00 0.00 4.12
7238 12930 0.538287 AGTGCTTCTGTCCTTTGGGC 60.538 55.000 0.00 0.00 0.00 5.36
7239 12931 1.600636 TGCTTCTGTCCTTTGGGCG 60.601 57.895 0.00 0.00 0.00 6.13
7240 12932 1.600916 GCTTCTGTCCTTTGGGCGT 60.601 57.895 0.00 0.00 0.00 5.68
7241 12933 1.856265 GCTTCTGTCCTTTGGGCGTG 61.856 60.000 0.00 0.00 0.00 5.34
7242 12934 1.856265 CTTCTGTCCTTTGGGCGTGC 61.856 60.000 0.00 0.00 0.00 5.34
7243 12935 3.726517 CTGTCCTTTGGGCGTGCG 61.727 66.667 0.00 0.00 0.00 5.34
7244 12936 4.243008 TGTCCTTTGGGCGTGCGA 62.243 61.111 0.00 0.00 0.00 5.10
7245 12937 3.423154 GTCCTTTGGGCGTGCGAG 61.423 66.667 0.00 0.00 0.00 5.03
7246 12938 3.621805 TCCTTTGGGCGTGCGAGA 61.622 61.111 0.00 0.00 0.00 4.04
7247 12939 2.436646 CCTTTGGGCGTGCGAGAT 60.437 61.111 0.00 0.00 0.00 2.75
7248 12940 2.753966 CCTTTGGGCGTGCGAGATG 61.754 63.158 0.00 0.00 0.00 2.90
7249 12941 3.386867 CTTTGGGCGTGCGAGATGC 62.387 63.158 0.00 0.00 46.70 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.770785 GCTCCCCATATACAATTAGTTGAACA 59.229 38.462 4.81 0.00 38.71 3.18
2 3 6.206829 GGCTCCCCATATACAATTAGTTGAAC 59.793 42.308 4.81 0.00 38.71 3.18
3 4 6.102615 AGGCTCCCCATATACAATTAGTTGAA 59.897 38.462 4.81 0.00 38.71 2.69
4 5 5.610982 AGGCTCCCCATATACAATTAGTTGA 59.389 40.000 4.81 0.00 38.71 3.18
5 6 5.707298 CAGGCTCCCCATATACAATTAGTTG 59.293 44.000 0.00 0.00 41.20 3.16
6 7 5.610982 TCAGGCTCCCCATATACAATTAGTT 59.389 40.000 0.00 0.00 0.00 2.24
7 8 5.162637 TCAGGCTCCCCATATACAATTAGT 58.837 41.667 0.00 0.00 0.00 2.24
8 9 5.762179 TCAGGCTCCCCATATACAATTAG 57.238 43.478 0.00 0.00 0.00 1.73
10 11 4.354987 ACATCAGGCTCCCCATATACAATT 59.645 41.667 0.00 0.00 0.00 2.32
11 12 3.918912 ACATCAGGCTCCCCATATACAAT 59.081 43.478 0.00 0.00 0.00 2.71
13 14 2.990195 ACATCAGGCTCCCCATATACA 58.010 47.619 0.00 0.00 0.00 2.29
14 15 4.373156 AAACATCAGGCTCCCCATATAC 57.627 45.455 0.00 0.00 0.00 1.47
15 16 7.822749 TTATAAACATCAGGCTCCCCATATA 57.177 36.000 0.00 0.00 0.00 0.86
16 17 6.718593 TTATAAACATCAGGCTCCCCATAT 57.281 37.500 0.00 0.00 0.00 1.78
17 18 6.102615 ACTTTATAAACATCAGGCTCCCCATA 59.897 38.462 0.00 0.00 0.00 2.74
18 19 5.103515 ACTTTATAAACATCAGGCTCCCCAT 60.104 40.000 0.00 0.00 0.00 4.00
19 20 4.229582 ACTTTATAAACATCAGGCTCCCCA 59.770 41.667 0.00 0.00 0.00 4.96
20 21 4.793201 ACTTTATAAACATCAGGCTCCCC 58.207 43.478 0.00 0.00 0.00 4.81
21 22 5.885912 TCAACTTTATAAACATCAGGCTCCC 59.114 40.000 0.00 0.00 0.00 4.30
22 23 7.573968 ATCAACTTTATAAACATCAGGCTCC 57.426 36.000 0.00 0.00 0.00 4.70
23 24 9.331282 ACTATCAACTTTATAAACATCAGGCTC 57.669 33.333 0.00 0.00 0.00 4.70
24 25 9.113838 CACTATCAACTTTATAAACATCAGGCT 57.886 33.333 0.00 0.00 0.00 4.58
25 26 7.857885 GCACTATCAACTTTATAAACATCAGGC 59.142 37.037 0.00 0.00 0.00 4.85
26 27 8.345565 GGCACTATCAACTTTATAAACATCAGG 58.654 37.037 0.00 0.00 0.00 3.86
27 28 9.113838 AGGCACTATCAACTTTATAAACATCAG 57.886 33.333 0.00 0.00 36.02 2.90
31 32 9.378551 CAGTAGGCACTATCAACTTTATAAACA 57.621 33.333 0.00 0.00 45.60 2.83
32 33 8.336080 GCAGTAGGCACTATCAACTTTATAAAC 58.664 37.037 0.00 0.00 45.60 2.01
33 34 7.223971 CGCAGTAGGCACTATCAACTTTATAAA 59.776 37.037 0.00 0.00 45.60 1.40
34 35 6.700081 CGCAGTAGGCACTATCAACTTTATAA 59.300 38.462 0.00 0.00 45.60 0.98
35 36 6.040054 TCGCAGTAGGCACTATCAACTTTATA 59.960 38.462 0.00 0.00 45.60 0.98
36 37 5.050490 CGCAGTAGGCACTATCAACTTTAT 58.950 41.667 0.00 0.00 45.60 1.40
37 38 4.158949 TCGCAGTAGGCACTATCAACTTTA 59.841 41.667 0.00 0.00 45.60 1.85
38 39 3.056107 TCGCAGTAGGCACTATCAACTTT 60.056 43.478 0.00 0.00 45.60 2.66
39 40 2.496070 TCGCAGTAGGCACTATCAACTT 59.504 45.455 0.00 0.00 45.60 2.66
40 41 2.100197 TCGCAGTAGGCACTATCAACT 58.900 47.619 0.00 0.00 45.60 3.16
41 42 2.579207 TCGCAGTAGGCACTATCAAC 57.421 50.000 0.00 0.00 45.60 3.18
42 43 3.305403 GCTATCGCAGTAGGCACTATCAA 60.305 47.826 0.00 0.00 45.17 2.57
43 44 2.229062 GCTATCGCAGTAGGCACTATCA 59.771 50.000 0.00 0.00 45.17 2.15
44 45 2.229062 TGCTATCGCAGTAGGCACTATC 59.771 50.000 0.00 0.00 42.11 2.08
45 46 2.239400 TGCTATCGCAGTAGGCACTAT 58.761 47.619 0.00 0.00 42.11 2.12
46 47 1.687563 TGCTATCGCAGTAGGCACTA 58.312 50.000 0.00 0.00 45.17 2.74
47 48 2.504920 TGCTATCGCAGTAGGCACT 58.495 52.632 0.00 0.00 45.17 4.40
56 57 5.369685 TTTTGAAATGTTCTGCTATCGCA 57.630 34.783 0.00 0.00 45.60 5.10
57 58 6.195983 CAGATTTTGAAATGTTCTGCTATCGC 59.804 38.462 0.00 0.00 0.00 4.58
58 59 7.466805 TCAGATTTTGAAATGTTCTGCTATCG 58.533 34.615 7.68 0.00 31.34 2.92
72 73 6.593382 CCCTGTTTGTGTTTTCAGATTTTGAA 59.407 34.615 0.00 0.00 43.92 2.69
73 74 6.071108 TCCCTGTTTGTGTTTTCAGATTTTGA 60.071 34.615 0.00 0.00 0.00 2.69
74 75 6.035975 GTCCCTGTTTGTGTTTTCAGATTTTG 59.964 38.462 0.00 0.00 0.00 2.44
75 76 6.106003 GTCCCTGTTTGTGTTTTCAGATTTT 58.894 36.000 0.00 0.00 0.00 1.82
76 77 5.395214 GGTCCCTGTTTGTGTTTTCAGATTT 60.395 40.000 0.00 0.00 0.00 2.17
77 78 4.099419 GGTCCCTGTTTGTGTTTTCAGATT 59.901 41.667 0.00 0.00 0.00 2.40
78 79 3.636764 GGTCCCTGTTTGTGTTTTCAGAT 59.363 43.478 0.00 0.00 0.00 2.90
79 80 3.020984 GGTCCCTGTTTGTGTTTTCAGA 58.979 45.455 0.00 0.00 0.00 3.27
80 81 2.757868 TGGTCCCTGTTTGTGTTTTCAG 59.242 45.455 0.00 0.00 0.00 3.02
81 82 2.757868 CTGGTCCCTGTTTGTGTTTTCA 59.242 45.455 0.00 0.00 0.00 2.69
82 83 2.100749 CCTGGTCCCTGTTTGTGTTTTC 59.899 50.000 0.00 0.00 0.00 2.29
83 84 2.107366 CCTGGTCCCTGTTTGTGTTTT 58.893 47.619 0.00 0.00 0.00 2.43
84 85 1.286553 TCCTGGTCCCTGTTTGTGTTT 59.713 47.619 0.00 0.00 0.00 2.83
85 86 0.923358 TCCTGGTCCCTGTTTGTGTT 59.077 50.000 0.00 0.00 0.00 3.32
86 87 1.073923 GATCCTGGTCCCTGTTTGTGT 59.926 52.381 0.00 0.00 0.00 3.72
87 88 1.352352 AGATCCTGGTCCCTGTTTGTG 59.648 52.381 0.00 0.00 0.00 3.33
88 89 1.630878 GAGATCCTGGTCCCTGTTTGT 59.369 52.381 0.00 0.00 0.00 2.83
89 90 1.912043 AGAGATCCTGGTCCCTGTTTG 59.088 52.381 0.00 0.00 0.00 2.93
90 91 2.350863 AGAGATCCTGGTCCCTGTTT 57.649 50.000 0.00 0.00 0.00 2.83
91 92 2.192263 GAAGAGATCCTGGTCCCTGTT 58.808 52.381 0.00 0.00 0.00 3.16
92 93 1.364328 AGAAGAGATCCTGGTCCCTGT 59.636 52.381 0.00 0.00 0.00 4.00
93 94 2.173126 AGAAGAGATCCTGGTCCCTG 57.827 55.000 0.00 0.00 0.00 4.45
94 95 2.178984 CCTAGAAGAGATCCTGGTCCCT 59.821 54.545 0.00 0.00 0.00 4.20
95 96 2.604139 CCTAGAAGAGATCCTGGTCCC 58.396 57.143 0.00 0.00 0.00 4.46
96 97 2.090999 ACCCTAGAAGAGATCCTGGTCC 60.091 54.545 0.00 0.00 0.00 4.46
97 98 2.962421 CACCCTAGAAGAGATCCTGGTC 59.038 54.545 0.00 0.00 0.00 4.02
98 99 2.316372 ACACCCTAGAAGAGATCCTGGT 59.684 50.000 0.00 0.00 0.00 4.00
99 100 2.962421 GACACCCTAGAAGAGATCCTGG 59.038 54.545 0.00 0.00 0.00 4.45
100 101 3.636679 TGACACCCTAGAAGAGATCCTG 58.363 50.000 0.00 0.00 0.00 3.86
101 102 4.338795 TTGACACCCTAGAAGAGATCCT 57.661 45.455 0.00 0.00 0.00 3.24
102 103 5.365314 AGATTTGACACCCTAGAAGAGATCC 59.635 44.000 0.00 0.00 0.00 3.36
103 104 6.478512 AGATTTGACACCCTAGAAGAGATC 57.521 41.667 0.00 0.00 0.00 2.75
104 105 6.441924 TGAAGATTTGACACCCTAGAAGAGAT 59.558 38.462 0.00 0.00 0.00 2.75
105 106 5.780282 TGAAGATTTGACACCCTAGAAGAGA 59.220 40.000 0.00 0.00 0.00 3.10
106 107 6.042638 TGAAGATTTGACACCCTAGAAGAG 57.957 41.667 0.00 0.00 0.00 2.85
107 108 6.627087 ATGAAGATTTGACACCCTAGAAGA 57.373 37.500 0.00 0.00 0.00 2.87
108 109 7.693969 AAATGAAGATTTGACACCCTAGAAG 57.306 36.000 0.00 0.00 30.17 2.85
109 110 9.177608 CATAAATGAAGATTTGACACCCTAGAA 57.822 33.333 0.00 0.00 33.63 2.10
110 111 8.548025 TCATAAATGAAGATTTGACACCCTAGA 58.452 33.333 0.00 0.00 33.63 2.43
111 112 8.737168 TCATAAATGAAGATTTGACACCCTAG 57.263 34.615 0.00 0.00 33.63 3.02
112 113 9.527157 TTTCATAAATGAAGATTTGACACCCTA 57.473 29.630 5.60 0.00 46.34 3.53
113 114 8.421249 TTTCATAAATGAAGATTTGACACCCT 57.579 30.769 5.60 0.00 46.34 4.34
114 115 8.306761 ACTTTCATAAATGAAGATTTGACACCC 58.693 33.333 5.60 0.00 46.34 4.61
115 116 9.132521 CACTTTCATAAATGAAGATTTGACACC 57.867 33.333 5.60 0.00 46.34 4.16
116 117 9.132521 CCACTTTCATAAATGAAGATTTGACAC 57.867 33.333 5.60 0.00 46.34 3.67
117 118 8.306038 CCCACTTTCATAAATGAAGATTTGACA 58.694 33.333 5.60 0.00 46.34 3.58
118 119 8.522830 TCCCACTTTCATAAATGAAGATTTGAC 58.477 33.333 5.60 0.00 46.34 3.18
119 120 8.522830 GTCCCACTTTCATAAATGAAGATTTGA 58.477 33.333 5.60 0.56 46.34 2.69
120 121 7.761249 GGTCCCACTTTCATAAATGAAGATTTG 59.239 37.037 5.60 2.96 46.34 2.32
121 122 7.454380 TGGTCCCACTTTCATAAATGAAGATTT 59.546 33.333 5.60 0.00 46.34 2.17
122 123 6.953520 TGGTCCCACTTTCATAAATGAAGATT 59.046 34.615 5.60 0.00 46.34 2.40
123 124 6.493166 TGGTCCCACTTTCATAAATGAAGAT 58.507 36.000 5.60 0.00 46.34 2.40
124 125 5.886609 TGGTCCCACTTTCATAAATGAAGA 58.113 37.500 5.60 0.00 46.34 2.87
125 126 6.567050 CATGGTCCCACTTTCATAAATGAAG 58.433 40.000 5.60 3.86 46.34 3.02
126 127 5.105392 GCATGGTCCCACTTTCATAAATGAA 60.105 40.000 1.23 1.23 44.42 2.57
127 128 4.402155 GCATGGTCCCACTTTCATAAATGA 59.598 41.667 0.00 0.00 34.44 2.57
137 138 1.003355 CTGACGCATGGTCCCACTT 60.003 57.895 10.60 0.00 45.46 3.16
144 145 0.251354 AATCTGAGCTGACGCATGGT 59.749 50.000 0.00 0.00 39.10 3.55
145 146 1.376543 AAATCTGAGCTGACGCATGG 58.623 50.000 0.00 0.00 39.10 3.66
146 147 2.676839 AGAAAATCTGAGCTGACGCATG 59.323 45.455 0.00 0.00 39.10 4.06
147 148 2.983229 AGAAAATCTGAGCTGACGCAT 58.017 42.857 0.00 0.00 39.10 4.73
174 175 8.894768 TTAAATGTTGTATTTGTCCTTTTGGG 57.105 30.769 0.00 0.00 40.87 4.12
214 215 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
215 216 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
216 217 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
217 218 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
218 219 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
219 220 1.135315 TCGACAAGTATTTCCGGACGG 60.135 52.381 1.83 3.96 0.00 4.79
220 221 2.267188 TCGACAAGTATTTCCGGACG 57.733 50.000 1.83 0.27 0.00 4.79
221 222 3.841643 TCTTCGACAAGTATTTCCGGAC 58.158 45.455 1.83 0.00 0.00 4.79
222 223 4.524316 TTCTTCGACAAGTATTTCCGGA 57.476 40.909 0.00 0.00 0.00 5.14
223 224 5.560148 CATTTCTTCGACAAGTATTTCCGG 58.440 41.667 0.00 0.00 0.00 5.14
224 225 5.022021 GCATTTCTTCGACAAGTATTTCCG 58.978 41.667 0.00 0.00 0.00 4.30
225 226 5.938322 TGCATTTCTTCGACAAGTATTTCC 58.062 37.500 0.00 0.00 0.00 3.13
226 227 9.554724 TTTATGCATTTCTTCGACAAGTATTTC 57.445 29.630 3.54 0.00 0.00 2.17
227 228 9.906660 TTTTATGCATTTCTTCGACAAGTATTT 57.093 25.926 3.54 0.00 0.00 1.40
228 229 9.906660 TTTTTATGCATTTCTTCGACAAGTATT 57.093 25.926 3.54 0.00 0.00 1.89
230 231 9.340695 CATTTTTATGCATTTCTTCGACAAGTA 57.659 29.630 3.54 0.00 0.00 2.24
231 232 7.329226 CCATTTTTATGCATTTCTTCGACAAGT 59.671 33.333 3.54 0.00 0.00 3.16
232 233 7.541783 TCCATTTTTATGCATTTCTTCGACAAG 59.458 33.333 3.54 0.00 0.00 3.16
233 234 7.374272 TCCATTTTTATGCATTTCTTCGACAA 58.626 30.769 3.54 0.00 0.00 3.18
234 235 6.918626 TCCATTTTTATGCATTTCTTCGACA 58.081 32.000 3.54 0.00 0.00 4.35
235 236 7.489113 ACATCCATTTTTATGCATTTCTTCGAC 59.511 33.333 3.54 0.00 0.00 4.20
236 237 7.546358 ACATCCATTTTTATGCATTTCTTCGA 58.454 30.769 3.54 0.00 0.00 3.71
237 238 7.760131 ACATCCATTTTTATGCATTTCTTCG 57.240 32.000 3.54 0.00 0.00 3.79
245 246 9.851686 AGTTCTAGATACATCCATTTTTATGCA 57.148 29.630 0.00 0.00 0.00 3.96
272 273 8.871125 AGGAACGGATGTATCTAGATGTATTTT 58.129 33.333 15.79 4.88 0.00 1.82
273 274 8.423906 AGGAACGGATGTATCTAGATGTATTT 57.576 34.615 15.79 1.74 0.00 1.40
274 275 7.891183 AGAGGAACGGATGTATCTAGATGTATT 59.109 37.037 15.79 0.43 0.00 1.89
275 276 7.338196 CAGAGGAACGGATGTATCTAGATGTAT 59.662 40.741 15.79 9.11 0.00 2.29
276 277 6.655425 CAGAGGAACGGATGTATCTAGATGTA 59.345 42.308 15.79 4.44 0.00 2.29
277 278 5.475220 CAGAGGAACGGATGTATCTAGATGT 59.525 44.000 15.79 0.32 0.00 3.06
278 279 5.707764 TCAGAGGAACGGATGTATCTAGATG 59.292 44.000 15.79 0.00 0.00 2.90
279 280 5.708230 GTCAGAGGAACGGATGTATCTAGAT 59.292 44.000 10.73 10.73 0.00 1.98
280 281 5.064558 GTCAGAGGAACGGATGTATCTAGA 58.935 45.833 0.00 0.00 0.00 2.43
281 282 4.822350 TGTCAGAGGAACGGATGTATCTAG 59.178 45.833 0.00 0.00 0.00 2.43
282 283 4.788679 TGTCAGAGGAACGGATGTATCTA 58.211 43.478 0.00 0.00 0.00 1.98
283 284 3.632333 TGTCAGAGGAACGGATGTATCT 58.368 45.455 0.00 0.00 0.00 1.98
284 285 4.142138 ACTTGTCAGAGGAACGGATGTATC 60.142 45.833 0.00 0.00 0.00 2.24
285 286 3.769844 ACTTGTCAGAGGAACGGATGTAT 59.230 43.478 0.00 0.00 0.00 2.29
286 287 3.162666 ACTTGTCAGAGGAACGGATGTA 58.837 45.455 0.00 0.00 0.00 2.29
287 288 1.971357 ACTTGTCAGAGGAACGGATGT 59.029 47.619 0.00 0.00 0.00 3.06
288 289 2.751166 ACTTGTCAGAGGAACGGATG 57.249 50.000 0.00 0.00 0.00 3.51
289 290 5.420409 GAAATACTTGTCAGAGGAACGGAT 58.580 41.667 0.00 0.00 0.00 4.18
290 291 4.322499 GGAAATACTTGTCAGAGGAACGGA 60.322 45.833 0.00 0.00 0.00 4.69
291 292 3.933332 GGAAATACTTGTCAGAGGAACGG 59.067 47.826 0.00 0.00 0.00 4.44
292 293 3.612860 CGGAAATACTTGTCAGAGGAACG 59.387 47.826 0.00 0.00 0.00 3.95
293 294 3.933332 CCGGAAATACTTGTCAGAGGAAC 59.067 47.826 0.00 0.00 0.00 3.62
294 295 3.835978 TCCGGAAATACTTGTCAGAGGAA 59.164 43.478 0.00 0.00 0.00 3.36
295 296 3.194968 GTCCGGAAATACTTGTCAGAGGA 59.805 47.826 5.23 0.00 0.00 3.71
296 297 3.522553 GTCCGGAAATACTTGTCAGAGG 58.477 50.000 5.23 0.00 0.00 3.69
297 298 3.179830 CGTCCGGAAATACTTGTCAGAG 58.820 50.000 5.23 0.00 0.00 3.35
298 299 2.094390 CCGTCCGGAAATACTTGTCAGA 60.094 50.000 5.23 0.00 37.50 3.27
299 300 2.094390 TCCGTCCGGAAATACTTGTCAG 60.094 50.000 5.23 0.00 42.05 3.51
300 301 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
301 302 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
302 303 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
303 304 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
304 305 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
305 306 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
306 307 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
307 308 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
308 309 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
309 310 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
310 311 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
311 312 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
312 313 1.041447 AATGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
313 314 0.102481 CAATGTACTCCCTCCGTCCG 59.898 60.000 0.00 0.00 0.00 4.79
314 315 1.481871 TCAATGTACTCCCTCCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
315 316 3.458189 CATTCAATGTACTCCCTCCGTC 58.542 50.000 0.00 0.00 0.00 4.79
316 317 2.170607 CCATTCAATGTACTCCCTCCGT 59.829 50.000 0.00 0.00 0.00 4.69
317 318 2.838736 CCATTCAATGTACTCCCTCCG 58.161 52.381 0.00 0.00 0.00 4.63
318 319 2.576615 GCCATTCAATGTACTCCCTCC 58.423 52.381 0.00 0.00 0.00 4.30
319 320 2.213499 CGCCATTCAATGTACTCCCTC 58.787 52.381 0.00 0.00 0.00 4.30
320 321 1.747206 GCGCCATTCAATGTACTCCCT 60.747 52.381 0.00 0.00 0.00 4.20
321 322 0.663153 GCGCCATTCAATGTACTCCC 59.337 55.000 0.00 0.00 0.00 4.30
322 323 1.378531 TGCGCCATTCAATGTACTCC 58.621 50.000 4.18 0.00 0.00 3.85
323 324 3.698029 ATTGCGCCATTCAATGTACTC 57.302 42.857 4.18 0.00 33.32 2.59
324 325 4.082300 TGAAATTGCGCCATTCAATGTACT 60.082 37.500 14.71 0.00 34.67 2.73
325 326 4.172505 TGAAATTGCGCCATTCAATGTAC 58.827 39.130 14.71 0.00 34.67 2.90
326 327 4.446994 TGAAATTGCGCCATTCAATGTA 57.553 36.364 14.71 0.00 34.67 2.29
327 328 3.316071 TGAAATTGCGCCATTCAATGT 57.684 38.095 14.71 0.00 34.67 2.71
328 329 3.927758 TCTTGAAATTGCGCCATTCAATG 59.072 39.130 23.63 18.82 40.94 2.82
337 338 4.970472 TTCAATTGTCTTGAAATTGCGC 57.030 36.364 0.00 0.00 42.29 6.09
350 351 3.243839 GGTTGTCACAGCCATTCAATTGT 60.244 43.478 5.66 0.00 34.81 2.71
372 373 1.525995 AACCATTCTATGCGCCCCG 60.526 57.895 4.18 0.00 0.00 5.73
381 383 5.178096 TCTGGAGATTTGCAACCATTCTA 57.822 39.130 6.94 0.00 0.00 2.10
418 420 6.952935 AGAGCTTCTAAATCAACAACTACG 57.047 37.500 0.00 0.00 0.00 3.51
436 438 3.106054 CCTCCATGCCATATCTAGAGCT 58.894 50.000 0.00 0.00 0.00 4.09
446 448 2.823959 ACAAATCAACCTCCATGCCAT 58.176 42.857 0.00 0.00 0.00 4.40
447 449 2.307496 ACAAATCAACCTCCATGCCA 57.693 45.000 0.00 0.00 0.00 4.92
452 454 4.380843 ACCACATACAAATCAACCTCCA 57.619 40.909 0.00 0.00 0.00 3.86
453 455 5.250200 TGTACCACATACAAATCAACCTCC 58.750 41.667 0.00 0.00 40.98 4.30
498 500 9.399797 ACTTGATGAGATGCTCAACAATATTTA 57.600 29.630 16.81 0.00 46.52 1.40
500 502 7.201794 CCACTTGATGAGATGCTCAACAATATT 60.202 37.037 16.81 5.88 46.52 1.28
505 507 3.340928 CCACTTGATGAGATGCTCAACA 58.659 45.455 0.78 2.36 44.04 3.33
519 521 4.371975 GCGTTAGTGGCCACTTGA 57.628 55.556 41.69 27.56 42.54 3.02
528 530 4.142403 ACATGATTGGAATTGGCGTTAGTG 60.142 41.667 0.00 0.00 0.00 2.74
545 547 5.010282 GGGTGAACTTTGTAGGAACATGAT 58.990 41.667 0.00 0.00 34.97 2.45
1131 1185 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1132 1186 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1133 1187 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1134 1188 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1135 1189 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1136 1190 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1137 1191 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1138 1192 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1139 1193 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1140 1194 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1141 1195 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1142 1196 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1143 1197 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1144 1198 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1145 1199 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
1146 1200 1.438651 AGACACACACACACACACAC 58.561 50.000 0.00 0.00 0.00 3.82
1147 1201 3.535280 ATAGACACACACACACACACA 57.465 42.857 0.00 0.00 0.00 3.72
1178 1232 2.417933 GCTAGTTGTGCCTCAAGATGTG 59.582 50.000 0.00 0.00 36.66 3.21
1188 1242 2.076863 ACGATGAAAGCTAGTTGTGCC 58.923 47.619 0.00 0.00 0.00 5.01
1209 1263 9.723601 ATAGTAACGTGGTAAAAATTTCCTACA 57.276 29.630 10.79 0.00 0.00 2.74
1274 1328 1.068541 GTGGATGGAAAACGCCTTGTC 60.069 52.381 0.00 0.00 0.00 3.18
1320 1374 2.434702 CCAAATACTACTCTCCGGGCTT 59.565 50.000 0.00 0.00 0.00 4.35
1418 1472 9.730705 CACATATGATTTACAAGTCCCAGATAT 57.269 33.333 10.38 0.00 0.00 1.63
1419 1473 8.713971 ACACATATGATTTACAAGTCCCAGATA 58.286 33.333 10.38 0.00 0.00 1.98
1543 1599 1.875420 TTGCACATGGGCATGGTTCG 61.875 55.000 25.99 0.00 44.48 3.95
1552 1608 3.393106 GCCCCCTTTGCACATGGG 61.393 66.667 6.24 6.24 40.59 4.00
1609 1667 7.125792 TCCTTCATGGAGGAGTTAACTATTC 57.874 40.000 19.69 8.99 40.87 1.75
1715 1773 4.103153 TGGTTGGGAGATCAGATTATGGAC 59.897 45.833 0.00 0.00 0.00 4.02
1721 1779 3.199508 CACTCTGGTTGGGAGATCAGATT 59.800 47.826 0.00 0.00 35.95 2.40
1784 1854 4.009675 CAATCCTACAGGCAAAAGCAGTA 58.990 43.478 0.00 0.00 34.44 2.74
1868 1938 9.494271 GCAAACTCATTTCTGATATAGGTGATA 57.506 33.333 0.00 0.00 0.00 2.15
1877 1947 6.595326 AGATCAACGCAAACTCATTTCTGATA 59.405 34.615 0.00 0.00 0.00 2.15
2215 2306 1.801913 GACGACGACGCTGCTGAAT 60.802 57.895 7.30 0.00 43.96 2.57
2266 2366 2.496871 CCAGCTGAGAGAGTGTCATCTT 59.503 50.000 17.39 0.00 0.00 2.40
2478 2581 3.703556 TGCTTGAGAACATTTGTTGGGAA 59.296 39.130 0.00 0.00 38.56 3.97
2527 2639 0.244721 GAAGTTGCCTCCACCATTGC 59.755 55.000 0.00 0.00 0.00 3.56
2580 2698 9.467796 AGCTTAAATTATTTACCTCTTGCTTCT 57.532 29.630 0.00 0.00 0.00 2.85
2654 2773 0.322636 AGGTCGAGGTCACATCGTCT 60.323 55.000 12.23 8.08 40.95 4.18
2661 2780 0.171455 CTGCTGTAGGTCGAGGTCAC 59.829 60.000 0.00 0.00 0.00 3.67
2665 2784 0.752009 TAGGCTGCTGTAGGTCGAGG 60.752 60.000 0.00 0.00 0.00 4.63
2780 4473 6.590068 ACATGGAGAGATATCAAGTGGAAAG 58.410 40.000 5.32 0.00 0.00 2.62
2816 4517 4.656112 ACCTACCAGGAGGAGTAAATGATG 59.344 45.833 1.94 0.00 37.67 3.07
2822 4523 4.202749 TGAAGAACCTACCAGGAGGAGTAA 60.203 45.833 1.94 0.00 37.67 2.24
3191 4901 2.084546 GTACTCCAAGGTTGTGGCATC 58.915 52.381 0.00 0.00 38.68 3.91
3351 5061 3.181495 CCGCGCACCATTTCCTTATTAAA 60.181 43.478 8.75 0.00 0.00 1.52
3372 5082 1.927371 TCCCCTTGGATAAACCCTTCC 59.073 52.381 0.00 0.00 35.03 3.46
3390 5100 9.319143 GTATCCAGAGCATTACACATATAATCC 57.681 37.037 0.00 0.00 0.00 3.01
3415 5125 1.169661 TTGAAATTGGCGACAGCGGT 61.170 50.000 0.00 0.00 46.35 5.68
3684 5406 1.148273 TGCCTTGCCGAAGACTGTT 59.852 52.632 0.00 0.00 0.00 3.16
3844 5566 2.230750 GGAGCACTGTAACCGTAAGAGT 59.769 50.000 0.00 0.00 43.02 3.24
4132 5857 5.163513 GCACCATATTTTCACCTTTGTCAG 58.836 41.667 0.00 0.00 0.00 3.51
4209 5934 5.501156 TCTGAGAGATGAGTGTACTTGCTA 58.499 41.667 0.00 0.00 0.00 3.49
4437 7362 2.170607 GGATGAAAGGCACAGGCTAGTA 59.829 50.000 0.00 0.00 37.50 1.82
4623 7548 1.078656 AGAGCTCCCTCTTGGACTTCT 59.921 52.381 10.93 0.00 46.16 2.85
4801 7726 3.502211 ACAAACAAGAGCTTTGGGTATCG 59.498 43.478 11.59 0.00 33.61 2.92
4804 7729 6.038936 GTCTTAACAAACAAGAGCTTTGGGTA 59.961 38.462 11.59 0.00 32.81 3.69
4809 7734 6.919721 TGTTGTCTTAACAAACAAGAGCTTT 58.080 32.000 0.00 0.00 46.56 3.51
4831 7756 6.070021 TCACTTCCCATATCAACATCTTCTGT 60.070 38.462 0.00 0.00 40.84 3.41
4901 7826 2.423538 GGTGCTGTCATTGGTAATGTCC 59.576 50.000 1.92 0.00 39.87 4.02
5211 9047 4.962362 TCTGCTGATCATCTAAACCTACCA 59.038 41.667 0.00 0.00 0.00 3.25
5212 9048 5.537300 TCTGCTGATCATCTAAACCTACC 57.463 43.478 0.00 0.00 0.00 3.18
5213 9049 5.931146 CCATCTGCTGATCATCTAAACCTAC 59.069 44.000 2.65 0.00 0.00 3.18
5214 9050 5.840693 TCCATCTGCTGATCATCTAAACCTA 59.159 40.000 2.65 0.00 0.00 3.08
5215 9051 4.657504 TCCATCTGCTGATCATCTAAACCT 59.342 41.667 2.65 0.00 0.00 3.50
5216 9052 4.965814 TCCATCTGCTGATCATCTAAACC 58.034 43.478 2.65 0.00 0.00 3.27
5217 9053 6.286758 TCTTCCATCTGCTGATCATCTAAAC 58.713 40.000 2.65 0.00 0.00 2.01
5218 9054 6.490241 TCTTCCATCTGCTGATCATCTAAA 57.510 37.500 2.65 0.00 0.00 1.85
5219 9055 6.042897 ACATCTTCCATCTGCTGATCATCTAA 59.957 38.462 2.65 0.00 0.00 2.10
5220 9056 5.543020 ACATCTTCCATCTGCTGATCATCTA 59.457 40.000 2.65 0.00 0.00 1.98
5221 9057 4.348461 ACATCTTCCATCTGCTGATCATCT 59.652 41.667 2.65 0.00 0.00 2.90
5222 9058 4.643463 ACATCTTCCATCTGCTGATCATC 58.357 43.478 2.65 0.00 0.00 2.92
5223 9059 4.102681 TGACATCTTCCATCTGCTGATCAT 59.897 41.667 2.65 0.00 0.00 2.45
5224 9060 3.453353 TGACATCTTCCATCTGCTGATCA 59.547 43.478 2.65 0.00 0.00 2.92
5225 9061 3.808726 GTGACATCTTCCATCTGCTGATC 59.191 47.826 2.65 0.00 0.00 2.92
5226 9062 3.455177 AGTGACATCTTCCATCTGCTGAT 59.545 43.478 0.00 0.00 0.00 2.90
5227 9063 2.836372 AGTGACATCTTCCATCTGCTGA 59.164 45.455 0.00 0.00 0.00 4.26
5228 9064 3.196463 GAGTGACATCTTCCATCTGCTG 58.804 50.000 0.00 0.00 0.00 4.41
5229 9065 2.170187 GGAGTGACATCTTCCATCTGCT 59.830 50.000 0.00 0.00 0.00 4.24
5230 9066 2.559440 GGAGTGACATCTTCCATCTGC 58.441 52.381 0.00 0.00 0.00 4.26
5231 9067 2.167281 ACGGAGTGACATCTTCCATCTG 59.833 50.000 0.00 0.00 42.51 2.90
5232 9068 2.461695 ACGGAGTGACATCTTCCATCT 58.538 47.619 0.00 0.00 42.51 2.90
5233 9069 2.969628 ACGGAGTGACATCTTCCATC 57.030 50.000 0.00 0.00 42.51 3.51
5246 9082 6.756833 ATCAGCCTGATCAGTAGACGGAGT 62.757 50.000 21.11 0.00 36.01 3.85
5247 9083 1.336440 CAGCCTGATCAGTAGACGGAG 59.664 57.143 21.11 4.61 0.00 4.63
5248 9084 1.064685 TCAGCCTGATCAGTAGACGGA 60.065 52.381 21.11 10.62 0.00 4.69
5249 9085 1.393603 TCAGCCTGATCAGTAGACGG 58.606 55.000 21.11 7.00 0.00 4.79
5258 9094 6.851698 AGTACAAGACTTTGATCAGCCTGATC 60.852 42.308 24.69 24.69 43.83 2.92
5259 9095 4.298103 ACAAGACTTTGATCAGCCTGAT 57.702 40.909 6.98 6.98 40.34 2.90
5260 9096 3.777106 ACAAGACTTTGATCAGCCTGA 57.223 42.857 0.00 0.00 37.73 3.86
5261 9097 4.573900 AGTACAAGACTTTGATCAGCCTG 58.426 43.478 0.00 0.00 33.13 4.85
5262 9098 4.899352 AGTACAAGACTTTGATCAGCCT 57.101 40.909 0.00 0.00 33.13 4.58
5273 9109 3.551846 CCACCACCAAAAGTACAAGACT 58.448 45.455 0.00 0.00 41.56 3.24
5274 9110 2.621526 CCCACCACCAAAAGTACAAGAC 59.378 50.000 0.00 0.00 0.00 3.01
5275 9111 2.242708 ACCCACCACCAAAAGTACAAGA 59.757 45.455 0.00 0.00 0.00 3.02
5276 9112 2.360801 CACCCACCACCAAAAGTACAAG 59.639 50.000 0.00 0.00 0.00 3.16
5277 9113 2.025226 TCACCCACCACCAAAAGTACAA 60.025 45.455 0.00 0.00 0.00 2.41
5278 9114 1.564818 TCACCCACCACCAAAAGTACA 59.435 47.619 0.00 0.00 0.00 2.90
5279 9115 2.158726 TCTCACCCACCACCAAAAGTAC 60.159 50.000 0.00 0.00 0.00 2.73
5280 9116 2.128535 TCTCACCCACCACCAAAAGTA 58.871 47.619 0.00 0.00 0.00 2.24
5281 9117 0.923358 TCTCACCCACCACCAAAAGT 59.077 50.000 0.00 0.00 0.00 2.66
5282 9118 2.065899 TTCTCACCCACCACCAAAAG 57.934 50.000 0.00 0.00 0.00 2.27
5283 9119 2.765689 ATTCTCACCCACCACCAAAA 57.234 45.000 0.00 0.00 0.00 2.44
5284 9120 2.983192 TCTATTCTCACCCACCACCAAA 59.017 45.455 0.00 0.00 0.00 3.28
5285 9121 2.626785 TCTATTCTCACCCACCACCAA 58.373 47.619 0.00 0.00 0.00 3.67
5379 9293 0.042131 ATTACCTGGGACGTCCTCCA 59.958 55.000 32.52 21.89 41.63 3.86
5437 9363 7.122055 CCCAATTTTACTAGCCATGTCACTAAA 59.878 37.037 0.00 0.00 0.00 1.85
5660 11140 7.547227 AGTGCACAGAAAGTTAAAAGAAACAT 58.453 30.769 21.04 0.00 0.00 2.71
5684 11164 4.714632 TCCAGTAAACTTCAGAACCCAAG 58.285 43.478 0.00 0.00 0.00 3.61
5713 11193 1.144708 TCCAACAGCCACCAGATTTCA 59.855 47.619 0.00 0.00 0.00 2.69
5759 11239 4.469227 AGAGAGCACTTTGTAGATCCACAT 59.531 41.667 0.00 0.00 0.00 3.21
5760 11240 3.834813 AGAGAGCACTTTGTAGATCCACA 59.165 43.478 0.00 0.00 0.00 4.17
5762 11242 4.348486 AGAGAGAGCACTTTGTAGATCCA 58.652 43.478 0.00 0.00 0.00 3.41
5763 11243 5.337578 AAGAGAGAGCACTTTGTAGATCC 57.662 43.478 0.00 0.00 0.00 3.36
5764 11244 7.767261 TCTAAAGAGAGAGCACTTTGTAGATC 58.233 38.462 0.00 0.00 35.99 2.75
5765 11245 7.710676 TCTAAAGAGAGAGCACTTTGTAGAT 57.289 36.000 0.00 0.00 35.99 1.98
5772 11252 9.196139 ACAGTATATTCTAAAGAGAGAGCACTT 57.804 33.333 0.00 0.00 31.77 3.16
5795 11278 8.229137 GCGTAGTAGTATCAGTAGGAAATACAG 58.771 40.741 0.00 0.00 36.79 2.74
5797 11280 7.095439 ACGCGTAGTAGTATCAGTAGGAAATAC 60.095 40.741 11.67 0.00 34.30 1.89
5799 11282 5.762218 ACGCGTAGTAGTATCAGTAGGAAAT 59.238 40.000 11.67 0.00 0.00 2.17
5840 11326 1.308998 CCAGCCAACGATGATAACCC 58.691 55.000 0.00 0.00 0.00 4.11
5848 11334 0.537143 TCTGCAAACCAGCCAACGAT 60.537 50.000 0.00 0.00 41.50 3.73
5930 11417 5.424895 CCCATCCACTTATTCCATGGAAAAA 59.575 40.000 30.28 18.65 45.47 1.94
5943 11430 3.743132 ACTAATGGTCCCCATCCACTTA 58.257 45.455 0.00 0.00 44.40 2.24
5956 11443 2.375174 TGCCAACTGAGGAACTAATGGT 59.625 45.455 0.00 0.00 41.55 3.55
5962 11449 1.280421 GGATCTGCCAACTGAGGAACT 59.720 52.381 0.00 0.00 38.01 3.01
5965 11452 3.087343 TGGATCTGCCAACTGAGGA 57.913 52.632 0.00 0.00 45.87 3.71
5987 11474 3.153919 TCCAGGCAAAACAGTAACATCC 58.846 45.455 0.00 0.00 0.00 3.51
5995 11485 3.071874 TGGATACTCCAGGCAAAACAG 57.928 47.619 0.00 0.00 42.67 3.16
6012 11502 0.680618 CCCAAGCTTGCAAACATGGA 59.319 50.000 22.33 0.00 0.00 3.41
6015 11505 4.284234 AGATTTACCCAAGCTTGCAAACAT 59.716 37.500 21.43 9.38 0.00 2.71
6077 11567 1.721664 CGCCAGATGCCAACCTGATG 61.722 60.000 0.00 0.00 36.24 3.07
6198 11784 0.442310 CAGTTTGGTATGGTGTCGCG 59.558 55.000 0.00 0.00 0.00 5.87
6199 11785 1.803334 TCAGTTTGGTATGGTGTCGC 58.197 50.000 0.00 0.00 0.00 5.19
6201 11787 3.869246 CCGTATCAGTTTGGTATGGTGTC 59.131 47.826 0.35 0.00 35.79 3.67
6204 11790 2.504175 AGCCGTATCAGTTTGGTATGGT 59.496 45.455 8.87 0.00 41.22 3.55
6213 11799 3.704566 TCTTCACCATAGCCGTATCAGTT 59.295 43.478 0.00 0.00 0.00 3.16
6256 11856 7.607991 AGCTTATGTTGCAGTACAAGTAGAAAT 59.392 33.333 0.00 0.00 39.50 2.17
6281 11881 5.740569 CCAAATCGACATGCATGAAAGTAAG 59.259 40.000 32.75 16.00 0.00 2.34
6341 11942 2.098443 GGCACCAAATACATACCCAACG 59.902 50.000 0.00 0.00 0.00 4.10
6347 11948 6.753107 AGTTAACTGGCACCAAATACATAC 57.247 37.500 7.48 0.00 0.00 2.39
6414 12016 4.700213 ACAACATATGGTCTTGTAACTGGC 59.300 41.667 7.80 0.00 0.00 4.85
6500 12113 9.820725 CAGCATGGGAAATCAAATTATTAGAAA 57.179 29.630 0.00 0.00 0.00 2.52
6525 12138 4.490743 CAACGATCGCATACCATATACCA 58.509 43.478 16.60 0.00 0.00 3.25
6526 12139 3.306166 GCAACGATCGCATACCATATACC 59.694 47.826 16.60 0.00 0.00 2.73
6527 12140 3.306166 GGCAACGATCGCATACCATATAC 59.694 47.826 16.60 0.00 0.00 1.47
6528 12141 3.056465 TGGCAACGATCGCATACCATATA 60.056 43.478 16.60 0.00 42.51 0.86
6529 12142 2.289382 TGGCAACGATCGCATACCATAT 60.289 45.455 16.60 0.00 42.51 1.78
6530 12143 1.069358 TGGCAACGATCGCATACCATA 59.931 47.619 16.60 0.00 42.51 2.74
6531 12144 0.179059 TGGCAACGATCGCATACCAT 60.179 50.000 16.60 0.00 42.51 3.55
6586 12199 6.519353 TTCATGCAAACTAATCGTATACCG 57.481 37.500 0.00 0.00 38.13 4.02
6611 12224 8.288689 TGAACCATTCCTTTATTTAGCCTTAC 57.711 34.615 0.00 0.00 0.00 2.34
6622 12235 6.016610 CCGTTTTCTCTTGAACCATTCCTTTA 60.017 38.462 0.00 0.00 31.02 1.85
6708 12329 2.915604 AGTCAGGAACACCATCCATCTT 59.084 45.455 0.00 0.00 42.27 2.40
6729 12350 1.071699 GGTGGTTGTAGCTGACTTCCA 59.928 52.381 0.00 0.00 32.12 3.53
6737 12358 1.370064 GTGTCCGGTGGTTGTAGCT 59.630 57.895 0.00 0.00 0.00 3.32
6755 12376 3.834726 TGGAAACAGTTGTGCCGG 58.165 55.556 0.00 0.00 35.01 6.13
6796 12433 2.750350 CAAGGTGGGAGAAGCCGT 59.250 61.111 0.00 0.00 37.63 5.68
6835 12509 4.203226 TCAACATGGTTACTTGCTTGTCA 58.797 39.130 0.00 0.00 0.00 3.58
6846 12520 5.304101 ACTGCAGGAAATTTCAACATGGTTA 59.696 36.000 19.93 0.00 0.00 2.85
6862 12536 4.072131 GGTTCAGTTTCATTACTGCAGGA 58.928 43.478 19.93 6.60 44.10 3.86
6875 12549 1.944709 GTTGCAGGTACGGTTCAGTTT 59.055 47.619 0.00 0.00 0.00 2.66
6876 12550 1.134340 TGTTGCAGGTACGGTTCAGTT 60.134 47.619 0.00 0.00 0.00 3.16
6901 12575 0.524816 CTGCACAATGGCGAGCAATC 60.525 55.000 0.00 0.00 36.44 2.67
6936 12610 1.202348 CGACCGCTCATCAGATTGTCT 60.202 52.381 0.00 0.00 0.00 3.41
6963 12637 1.055040 CTAGAGATTCAGCCAGGGGG 58.945 60.000 0.00 0.00 37.18 5.40
7000 12674 1.856629 CGACTAACCCTACCCTGGAA 58.143 55.000 0.00 0.00 0.00 3.53
7001 12675 0.685458 GCGACTAACCCTACCCTGGA 60.685 60.000 0.00 0.00 0.00 3.86
7002 12676 1.683418 GGCGACTAACCCTACCCTGG 61.683 65.000 0.00 0.00 0.00 4.45
7003 12677 1.821258 GGCGACTAACCCTACCCTG 59.179 63.158 0.00 0.00 0.00 4.45
7004 12678 1.755783 CGGCGACTAACCCTACCCT 60.756 63.158 0.00 0.00 0.00 4.34
7005 12679 1.322538 TTCGGCGACTAACCCTACCC 61.323 60.000 10.16 0.00 0.00 3.69
7016 12690 0.854705 AACTACGTTTGTTCGGCGAC 59.145 50.000 10.16 5.76 34.94 5.19
7024 12698 6.483974 TGATGTACCAATTCAACTACGTTTGT 59.516 34.615 0.00 0.00 0.00 2.83
7070 12744 1.528586 CTTGGACGCCGATGATGATTC 59.471 52.381 0.00 0.00 0.00 2.52
7148 12840 2.266055 CAAGCTCCGTCCACCTCC 59.734 66.667 0.00 0.00 0.00 4.30
7157 12849 2.739996 ATCCCCTCAGCAAGCTCCG 61.740 63.158 0.00 0.00 0.00 4.63
7162 12854 2.123982 GCCCATCCCCTCAGCAAG 60.124 66.667 0.00 0.00 0.00 4.01
7208 12900 4.452733 AAGCACTACCGCCGCCTC 62.453 66.667 0.00 0.00 0.00 4.70
7209 12901 4.452733 GAAGCACTACCGCCGCCT 62.453 66.667 0.00 0.00 0.00 5.52
7210 12902 4.452733 AGAAGCACTACCGCCGCC 62.453 66.667 0.00 0.00 0.00 6.13
7211 12903 3.188786 CAGAAGCACTACCGCCGC 61.189 66.667 0.00 0.00 0.00 6.53
7212 12904 1.805945 GACAGAAGCACTACCGCCG 60.806 63.158 0.00 0.00 0.00 6.46
7213 12905 1.448013 GGACAGAAGCACTACCGCC 60.448 63.158 0.00 0.00 0.00 6.13
7214 12906 0.037232 AAGGACAGAAGCACTACCGC 60.037 55.000 0.00 0.00 32.46 5.68
7215 12907 2.069273 CAAAGGACAGAAGCACTACCG 58.931 52.381 0.00 0.00 32.46 4.02
7216 12908 2.427506 CCAAAGGACAGAAGCACTACC 58.572 52.381 0.00 0.00 0.00 3.18
7217 12909 2.427506 CCCAAAGGACAGAAGCACTAC 58.572 52.381 0.00 0.00 33.47 2.73
7218 12910 1.271379 GCCCAAAGGACAGAAGCACTA 60.271 52.381 0.00 0.00 33.47 2.74
7219 12911 0.538287 GCCCAAAGGACAGAAGCACT 60.538 55.000 0.00 0.00 33.47 4.40
7220 12912 1.856265 CGCCCAAAGGACAGAAGCAC 61.856 60.000 0.00 0.00 33.47 4.40
7221 12913 1.600636 CGCCCAAAGGACAGAAGCA 60.601 57.895 0.00 0.00 33.47 3.91
7222 12914 1.600916 ACGCCCAAAGGACAGAAGC 60.601 57.895 0.00 0.00 33.47 3.86
7223 12915 1.856265 GCACGCCCAAAGGACAGAAG 61.856 60.000 0.00 0.00 33.47 2.85
7224 12916 1.896660 GCACGCCCAAAGGACAGAA 60.897 57.895 0.00 0.00 33.47 3.02
7225 12917 2.281484 GCACGCCCAAAGGACAGA 60.281 61.111 0.00 0.00 33.47 3.41
7226 12918 3.726517 CGCACGCCCAAAGGACAG 61.727 66.667 0.00 0.00 33.47 3.51
7227 12919 4.243008 TCGCACGCCCAAAGGACA 62.243 61.111 0.00 0.00 33.47 4.02
7228 12920 3.423154 CTCGCACGCCCAAAGGAC 61.423 66.667 0.00 0.00 33.47 3.85
7229 12921 2.954684 ATCTCGCACGCCCAAAGGA 61.955 57.895 0.00 0.00 33.47 3.36
7230 12922 2.436646 ATCTCGCACGCCCAAAGG 60.437 61.111 0.00 0.00 0.00 3.11
7231 12923 2.787249 CATCTCGCACGCCCAAAG 59.213 61.111 0.00 0.00 0.00 2.77
7232 12924 3.430862 GCATCTCGCACGCCCAAA 61.431 61.111 0.00 0.00 41.79 3.28
7238 12930 2.652179 ATCGACGCATCTCGCACG 60.652 61.111 0.00 0.00 42.60 5.34
7239 12931 2.916423 CATCGACGCATCTCGCAC 59.084 61.111 0.00 0.00 42.60 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.