Multiple sequence alignment - TraesCS4A01G470500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G470500 chr4A 100.000 5194 0 0 1 5194 731401686 731396493 0.000000e+00 9592.0
1 TraesCS4A01G470500 chr4A 75.867 663 130 22 37 687 723597903 723598547 1.400000e-80 311.0
2 TraesCS4A01G470500 chr4A 89.506 162 16 1 1662 1823 698482094 698481934 2.450000e-48 204.0
3 TraesCS4A01G470500 chr7D 91.066 2149 142 18 2076 4209 8354434 8356547 0.000000e+00 2859.0
4 TraesCS4A01G470500 chr7D 95.373 1664 71 1 1 1658 8352564 8354227 0.000000e+00 2641.0
5 TraesCS4A01G470500 chr7D 78.783 575 106 7 28 600 3823803 3824363 6.350000e-99 372.0
6 TraesCS4A01G470500 chr7D 77.702 583 104 21 28 603 13603913 13604476 3.000000e-87 333.0
7 TraesCS4A01G470500 chr7D 94.203 138 7 1 4101 4237 8356542 8356679 5.270000e-50 209.0
8 TraesCS4A01G470500 chr7D 83.133 166 19 8 4867 5032 192391786 192391630 5.420000e-30 143.0
9 TraesCS4A01G470500 chr7D 89.888 89 9 0 1837 1925 8354272 8354360 1.180000e-21 115.0
10 TraesCS4A01G470500 chr7D 90.385 52 2 2 1927 1975 8354382 8354433 1.210000e-06 65.8
11 TraesCS4A01G470500 chr7A 88.744 1226 101 25 3992 5192 8790895 8792108 0.000000e+00 1465.0
12 TraesCS4A01G470500 chr7A 80.116 1891 302 47 2101 3956 8788921 8790772 0.000000e+00 1341.0
13 TraesCS4A01G470500 chr7A 86.265 1063 128 13 2446 3497 8997945 8996890 0.000000e+00 1138.0
14 TraesCS4A01G470500 chr7A 81.609 870 129 13 1 868 8787037 8787877 0.000000e+00 691.0
15 TraesCS4A01G470500 chr7A 88.454 511 57 2 273 781 8999914 8999404 2.660000e-172 616.0
16 TraesCS4A01G470500 chr7A 80.189 742 110 25 3559 4289 8996886 8996171 5.960000e-144 521.0
17 TraesCS4A01G470500 chr7A 78.295 645 126 8 34 671 13238372 13239009 2.250000e-108 403.0
18 TraesCS4A01G470500 chr7A 90.975 277 25 0 1 277 9004108 9003832 1.770000e-99 374.0
19 TraesCS4A01G470500 chr7A 78.510 577 104 9 28 600 3269409 3269969 1.370000e-95 361.0
20 TraesCS4A01G470500 chr7A 78.510 577 104 9 28 600 3295306 3295866 1.370000e-95 361.0
21 TraesCS4A01G470500 chr7A 76.607 731 124 32 15 723 3424810 3424105 4.950000e-95 359.0
22 TraesCS4A01G470500 chr7A 84.177 316 44 3 2695 3005 8943354 8943040 8.450000e-78 302.0
23 TraesCS4A01G470500 chr7A 81.793 357 52 8 592 946 8931563 8931218 2.370000e-73 287.0
24 TraesCS4A01G470500 chr7A 80.063 316 60 1 1011 1326 8999233 8998921 1.120000e-56 231.0
25 TraesCS4A01G470500 chr7A 81.159 69 11 2 4906 4973 616560923 616560990 3.000000e-03 54.7
26 TraesCS4A01G470500 chr3A 84.458 1319 173 21 2531 3828 69292470 69293777 0.000000e+00 1271.0
27 TraesCS4A01G470500 chr3B 84.191 1322 176 24 2532 3832 96814173 96815482 0.000000e+00 1253.0
28 TraesCS4A01G470500 chr3B 84.689 1156 156 14 2679 3824 96842621 96843765 0.000000e+00 1134.0
29 TraesCS4A01G470500 chr3D 84.015 1320 181 17 2524 3828 61074155 61075459 0.000000e+00 1242.0
30 TraesCS4A01G470500 chr3D 82.538 1048 143 26 2679 3694 61194874 61195913 0.000000e+00 885.0
31 TraesCS4A01G470500 chr3D 77.530 583 105 21 28 603 585097388 585096825 1.390000e-85 327.0
32 TraesCS4A01G470500 chr3D 90.062 161 12 3 1664 1824 610086708 610086552 6.820000e-49 206.0
33 TraesCS4A01G470500 chr3D 89.024 164 14 4 1661 1824 22385922 22385763 3.170000e-47 200.0
34 TraesCS4A01G470500 chr3D 88.415 164 16 3 1661 1824 11283579 11283419 1.480000e-45 195.0
35 TraesCS4A01G470500 chr3D 83.516 91 7 6 4897 4983 529499065 529498979 1.550000e-10 78.7
36 TraesCS4A01G470500 chr2D 82.253 586 99 3 15 596 603138699 603138115 7.760000e-138 501.0
37 TraesCS4A01G470500 chr2D 88.957 163 15 3 1662 1824 617901689 617901530 1.140000e-46 198.0
38 TraesCS4A01G470500 chr2B 88.485 165 16 3 1660 1824 56895506 56895345 4.100000e-46 196.0
39 TraesCS4A01G470500 chr2B 88.957 163 12 5 1662 1824 763883460 763883304 4.100000e-46 196.0
40 TraesCS4A01G470500 chr7B 88.415 164 15 4 1660 1823 478838005 478838164 1.480000e-45 195.0
41 TraesCS4A01G470500 chr5B 88.344 163 17 2 1662 1824 7071469 7071629 1.480000e-45 195.0
42 TraesCS4A01G470500 chr5B 79.747 79 14 2 4895 4972 352670492 352670415 7.270000e-04 56.5
43 TraesCS4A01G470500 chr5D 82.558 86 9 6 4893 4973 358083577 358083493 2.590000e-08 71.3
44 TraesCS4A01G470500 chr4B 91.489 47 3 1 4926 4972 664187492 664187447 4.340000e-06 63.9
45 TraesCS4A01G470500 chr4D 86.000 50 5 1 4925 4972 37539808 37539857 9.000000e-03 52.8
46 TraesCS4A01G470500 chr1B 100.000 28 0 0 4946 4973 590988493 590988520 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G470500 chr4A 731396493 731401686 5193 True 9592.000000 9592 100.000000 1 5194 1 chr4A.!!$R2 5193
1 TraesCS4A01G470500 chr4A 723597903 723598547 644 False 311.000000 311 75.867000 37 687 1 chr4A.!!$F1 650
2 TraesCS4A01G470500 chr7D 8352564 8356679 4115 False 1177.960000 2859 92.183000 1 4237 5 chr7D.!!$F3 4236
3 TraesCS4A01G470500 chr7D 3823803 3824363 560 False 372.000000 372 78.783000 28 600 1 chr7D.!!$F1 572
4 TraesCS4A01G470500 chr7D 13603913 13604476 563 False 333.000000 333 77.702000 28 603 1 chr7D.!!$F2 575
5 TraesCS4A01G470500 chr7A 8787037 8792108 5071 False 1165.666667 1465 83.489667 1 5192 3 chr7A.!!$F5 5191
6 TraesCS4A01G470500 chr7A 8996171 9004108 7937 True 576.000000 1138 85.189200 1 4289 5 chr7A.!!$R4 4288
7 TraesCS4A01G470500 chr7A 13238372 13239009 637 False 403.000000 403 78.295000 34 671 1 chr7A.!!$F3 637
8 TraesCS4A01G470500 chr7A 3269409 3269969 560 False 361.000000 361 78.510000 28 600 1 chr7A.!!$F1 572
9 TraesCS4A01G470500 chr7A 3295306 3295866 560 False 361.000000 361 78.510000 28 600 1 chr7A.!!$F2 572
10 TraesCS4A01G470500 chr7A 3424105 3424810 705 True 359.000000 359 76.607000 15 723 1 chr7A.!!$R1 708
11 TraesCS4A01G470500 chr3A 69292470 69293777 1307 False 1271.000000 1271 84.458000 2531 3828 1 chr3A.!!$F1 1297
12 TraesCS4A01G470500 chr3B 96814173 96815482 1309 False 1253.000000 1253 84.191000 2532 3832 1 chr3B.!!$F1 1300
13 TraesCS4A01G470500 chr3B 96842621 96843765 1144 False 1134.000000 1134 84.689000 2679 3824 1 chr3B.!!$F2 1145
14 TraesCS4A01G470500 chr3D 61074155 61075459 1304 False 1242.000000 1242 84.015000 2524 3828 1 chr3D.!!$F1 1304
15 TraesCS4A01G470500 chr3D 61194874 61195913 1039 False 885.000000 885 82.538000 2679 3694 1 chr3D.!!$F2 1015
16 TraesCS4A01G470500 chr3D 585096825 585097388 563 True 327.000000 327 77.530000 28 603 1 chr3D.!!$R4 575
17 TraesCS4A01G470500 chr2D 603138115 603138699 584 True 501.000000 501 82.253000 15 596 1 chr2D.!!$R1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 4403 0.178975 TTGACAAGATGGCCGGGTTT 60.179 50.0 2.18 0.00 0.00 3.27 F
1294 5271 0.028505 CTTTGCCGCATCCATCTTCG 59.971 55.0 0.00 0.00 0.00 3.79 F
1777 5772 0.035725 GGGAAACCGGATCGAAACCT 60.036 55.0 9.46 0.00 43.64 3.50 F
2073 6092 0.826715 GCAGTATGGAGAGGTGCTGA 59.173 55.0 0.00 0.00 35.86 4.26 F
3413 7797 0.878961 GGTGACTGTCAACGTGGGAC 60.879 60.0 12.81 12.36 35.83 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 5752 0.035725 GGTTTCGATCCGGTTTCCCT 60.036 55.000 0.00 0.00 0.00 4.20 R
2274 6395 0.879839 TCACACACACACGCATCCAG 60.880 55.000 0.00 0.00 0.00 3.86 R
3413 7797 0.238289 ATTTTCGAGGTGCAACAGCG 59.762 50.000 3.64 7.72 39.98 5.18 R
4053 8578 1.284198 AGCCAGCTCAGGTTCATCATT 59.716 47.619 0.00 0.00 0.00 2.57 R
4586 9223 0.447801 GCGTGCCGAATTGAACTGAT 59.552 50.000 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 186 2.200081 AGTAGTGTCTCATGGCCCATT 58.800 47.619 0.00 0.00 0.00 3.16
308 4237 5.107065 GCGTCATATTTTCCCGAATTCCTAG 60.107 44.000 0.00 0.00 0.00 3.02
474 4403 0.178975 TTGACAAGATGGCCGGGTTT 60.179 50.000 2.18 0.00 0.00 3.27
552 4481 1.360192 GGCGGATGCAATGCCTAAC 59.640 57.895 17.20 1.28 45.40 2.34
613 4554 5.586243 CGAATGGACCAACATCAACTAATCT 59.414 40.000 0.00 0.00 0.00 2.40
755 4702 5.250200 TGTGTGTTTGGTGACTTCTACTTT 58.750 37.500 0.00 0.00 0.00 2.66
764 4711 4.870991 GGTGACTTCTACTTTCTATGGTGC 59.129 45.833 0.00 0.00 0.00 5.01
765 4712 4.870991 GTGACTTCTACTTTCTATGGTGCC 59.129 45.833 0.00 0.00 0.00 5.01
768 4715 4.142138 ACTTCTACTTTCTATGGTGCCGAG 60.142 45.833 0.00 0.00 0.00 4.63
802 4749 3.691342 CTCCCACCAACTCGGCGA 61.691 66.667 10.14 10.14 39.03 5.54
1031 5008 2.725312 GCTCCATGCTCTCCGTCCA 61.725 63.158 0.00 0.00 38.95 4.02
1051 5028 2.190578 GTCCCTTCCTGGATGCCG 59.809 66.667 0.00 0.00 36.63 5.69
1294 5271 0.028505 CTTTGCCGCATCCATCTTCG 59.971 55.000 0.00 0.00 0.00 3.79
1302 5279 0.933097 CATCCATCTTCGAGGTTGCG 59.067 55.000 0.27 0.00 0.00 4.85
1344 5321 0.629596 TCCGCCTCTTCCTCCTCTTA 59.370 55.000 0.00 0.00 0.00 2.10
1453 5436 8.477419 AAAAGAATGGGAAAGAACACTATCAA 57.523 30.769 0.00 0.00 0.00 2.57
1454 5437 7.693969 AAGAATGGGAAAGAACACTATCAAG 57.306 36.000 0.00 0.00 0.00 3.02
1526 5511 7.090173 ACAAGCATTACATTTGTGGTGAATAC 58.910 34.615 0.00 0.00 34.04 1.89
1533 5519 6.757897 ACATTTGTGGTGAATACATGGTAG 57.242 37.500 0.00 0.00 0.00 3.18
1538 5524 4.110482 GTGGTGAATACATGGTAGTCGTC 58.890 47.826 0.00 0.00 0.00 4.20
1571 5557 6.149973 TGAAGTTTTTGATGAGTGCTAGGATG 59.850 38.462 0.00 0.00 0.00 3.51
1598 5584 8.258007 TGTTGAGTTATTTGGAGATACCTACTG 58.742 37.037 0.00 0.00 39.86 2.74
1610 5596 1.301716 CCTACTGCGGTGCAACACT 60.302 57.895 8.92 0.00 38.41 3.55
1621 5610 2.949644 GGTGCAACACTCACTTAGGTTT 59.050 45.455 0.00 0.00 39.98 3.27
1649 5644 4.566004 TCCATTCCTAACTCAGTTTGACG 58.434 43.478 0.00 0.00 0.00 4.35
1654 5649 3.057033 TCCTAACTCAGTTTGACGTAGGC 60.057 47.826 0.00 0.00 0.00 3.93
1689 5684 1.993956 TGTTCAACAATCACCTGGGG 58.006 50.000 0.00 0.00 0.00 4.96
1690 5685 1.496857 TGTTCAACAATCACCTGGGGA 59.503 47.619 0.00 0.00 0.00 4.81
1691 5686 2.162681 GTTCAACAATCACCTGGGGAG 58.837 52.381 4.33 0.00 0.00 4.30
1692 5687 0.698238 TCAACAATCACCTGGGGAGG 59.302 55.000 4.33 1.45 0.00 4.30
1693 5688 0.698238 CAACAATCACCTGGGGAGGA 59.302 55.000 4.33 0.00 0.00 3.71
1694 5689 0.995024 AACAATCACCTGGGGAGGAG 59.005 55.000 4.33 0.00 0.00 3.69
1696 5691 0.543749 CAATCACCTGGGGAGGAGTC 59.456 60.000 4.33 0.00 0.00 3.36
1697 5692 0.621862 AATCACCTGGGGAGGAGTCC 60.622 60.000 4.33 0.00 43.05 3.85
1716 5711 6.936968 AGTCCCTCCACCTGAATATATTAC 57.063 41.667 0.00 0.00 0.00 1.89
1717 5712 6.635021 AGTCCCTCCACCTGAATATATTACT 58.365 40.000 0.00 0.00 0.00 2.24
1718 5713 6.726764 AGTCCCTCCACCTGAATATATTACTC 59.273 42.308 0.00 0.00 0.00 2.59
1719 5714 6.497259 GTCCCTCCACCTGAATATATTACTCA 59.503 42.308 0.00 0.00 0.00 3.41
1720 5715 7.016268 GTCCCTCCACCTGAATATATTACTCAA 59.984 40.741 0.00 0.00 0.00 3.02
1721 5716 7.570982 TCCCTCCACCTGAATATATTACTCAAA 59.429 37.037 0.00 0.00 0.00 2.69
1722 5717 7.880195 CCCTCCACCTGAATATATTACTCAAAG 59.120 40.741 0.00 0.00 0.00 2.77
1723 5718 8.432805 CCTCCACCTGAATATATTACTCAAAGT 58.567 37.037 0.00 0.00 0.00 2.66
1724 5719 9.265901 CTCCACCTGAATATATTACTCAAAGTG 57.734 37.037 0.00 3.99 0.00 3.16
1725 5720 8.768397 TCCACCTGAATATATTACTCAAAGTGT 58.232 33.333 0.00 0.00 0.00 3.55
1726 5721 9.046296 CCACCTGAATATATTACTCAAAGTGTC 57.954 37.037 0.00 0.00 0.00 3.67
1727 5722 9.046296 CACCTGAATATATTACTCAAAGTGTCC 57.954 37.037 0.00 0.00 0.00 4.02
1728 5723 8.768397 ACCTGAATATATTACTCAAAGTGTCCA 58.232 33.333 0.00 0.00 0.00 4.02
1729 5724 9.784531 CCTGAATATATTACTCAAAGTGTCCAT 57.215 33.333 0.00 0.00 0.00 3.41
1735 5730 6.699575 ATTACTCAAAGTGTCCATTATGCC 57.300 37.500 0.00 0.00 0.00 4.40
1736 5731 4.032960 ACTCAAAGTGTCCATTATGCCA 57.967 40.909 0.00 0.00 0.00 4.92
1737 5732 4.012374 ACTCAAAGTGTCCATTATGCCAG 58.988 43.478 0.00 0.00 0.00 4.85
1738 5733 3.355378 TCAAAGTGTCCATTATGCCAGG 58.645 45.455 0.00 0.00 0.00 4.45
1739 5734 3.010027 TCAAAGTGTCCATTATGCCAGGA 59.990 43.478 0.00 0.00 0.00 3.86
1740 5735 3.287867 AAGTGTCCATTATGCCAGGAG 57.712 47.619 0.00 0.00 30.78 3.69
1741 5736 2.481441 AGTGTCCATTATGCCAGGAGA 58.519 47.619 0.00 0.00 30.78 3.71
1742 5737 2.437281 AGTGTCCATTATGCCAGGAGAG 59.563 50.000 0.00 0.00 30.78 3.20
1743 5738 2.171448 GTGTCCATTATGCCAGGAGAGT 59.829 50.000 0.00 0.00 30.78 3.24
1744 5739 2.171237 TGTCCATTATGCCAGGAGAGTG 59.829 50.000 0.00 0.00 30.78 3.51
1745 5740 2.435805 GTCCATTATGCCAGGAGAGTGA 59.564 50.000 0.00 0.00 30.78 3.41
1746 5741 3.072184 GTCCATTATGCCAGGAGAGTGAT 59.928 47.826 0.00 0.00 30.78 3.06
1747 5742 3.326006 TCCATTATGCCAGGAGAGTGATC 59.674 47.826 0.00 0.00 0.00 2.92
1748 5743 3.558746 CCATTATGCCAGGAGAGTGATCC 60.559 52.174 0.00 0.00 39.89 3.36
1749 5744 2.477104 TATGCCAGGAGAGTGATCCA 57.523 50.000 0.00 0.00 42.26 3.41
1750 5745 1.129917 ATGCCAGGAGAGTGATCCAG 58.870 55.000 0.00 0.00 42.26 3.86
1751 5746 0.252421 TGCCAGGAGAGTGATCCAGT 60.252 55.000 0.00 0.00 42.26 4.00
1752 5747 0.908198 GCCAGGAGAGTGATCCAGTT 59.092 55.000 0.00 0.00 42.26 3.16
1753 5748 1.280421 GCCAGGAGAGTGATCCAGTTT 59.720 52.381 0.00 0.00 42.26 2.66
1754 5749 2.501723 GCCAGGAGAGTGATCCAGTTTA 59.498 50.000 0.00 0.00 42.26 2.01
1755 5750 3.135530 GCCAGGAGAGTGATCCAGTTTAT 59.864 47.826 0.00 0.00 42.26 1.40
1756 5751 4.345257 GCCAGGAGAGTGATCCAGTTTATA 59.655 45.833 0.00 0.00 42.26 0.98
1757 5752 5.163301 GCCAGGAGAGTGATCCAGTTTATAA 60.163 44.000 0.00 0.00 42.26 0.98
1758 5753 6.520272 CCAGGAGAGTGATCCAGTTTATAAG 58.480 44.000 0.00 0.00 42.26 1.73
1759 5754 6.463614 CCAGGAGAGTGATCCAGTTTATAAGG 60.464 46.154 0.00 0.00 42.26 2.69
1760 5755 5.604650 AGGAGAGTGATCCAGTTTATAAGGG 59.395 44.000 0.00 0.00 42.26 3.95
1761 5756 5.602978 GGAGAGTGATCCAGTTTATAAGGGA 59.397 44.000 5.41 5.41 39.34 4.20
1762 5757 6.099845 GGAGAGTGATCCAGTTTATAAGGGAA 59.900 42.308 6.67 0.00 39.34 3.97
1763 5758 7.365652 GGAGAGTGATCCAGTTTATAAGGGAAA 60.366 40.741 6.67 0.00 39.34 3.13
1764 5759 7.339482 AGAGTGATCCAGTTTATAAGGGAAAC 58.661 38.462 6.67 8.05 37.11 2.78
1776 5771 2.474561 GGGAAACCGGATCGAAACC 58.525 57.895 9.46 1.07 43.64 3.27
1777 5772 0.035725 GGGAAACCGGATCGAAACCT 60.036 55.000 9.46 0.00 43.64 3.50
1778 5773 1.612462 GGGAAACCGGATCGAAACCTT 60.612 52.381 9.46 0.00 43.64 3.50
1779 5774 2.156917 GGAAACCGGATCGAAACCTTT 58.843 47.619 9.46 0.00 0.00 3.11
1780 5775 3.337358 GGAAACCGGATCGAAACCTTTA 58.663 45.455 9.46 0.00 0.00 1.85
1781 5776 3.752747 GGAAACCGGATCGAAACCTTTAA 59.247 43.478 9.46 0.00 0.00 1.52
1782 5777 4.378770 GGAAACCGGATCGAAACCTTTAAC 60.379 45.833 9.46 0.00 0.00 2.01
1783 5778 3.405823 ACCGGATCGAAACCTTTAACA 57.594 42.857 9.46 0.00 0.00 2.41
1784 5779 3.742385 ACCGGATCGAAACCTTTAACAA 58.258 40.909 9.46 0.00 0.00 2.83
1785 5780 4.136051 ACCGGATCGAAACCTTTAACAAA 58.864 39.130 9.46 0.00 0.00 2.83
1786 5781 4.763279 ACCGGATCGAAACCTTTAACAAAT 59.237 37.500 9.46 0.00 0.00 2.32
1787 5782 5.242171 ACCGGATCGAAACCTTTAACAAATT 59.758 36.000 9.46 0.00 0.00 1.82
1788 5783 5.571357 CCGGATCGAAACCTTTAACAAATTG 59.429 40.000 0.00 0.00 0.00 2.32
1789 5784 6.375377 CGGATCGAAACCTTTAACAAATTGA 58.625 36.000 0.00 0.00 0.00 2.57
1790 5785 6.304683 CGGATCGAAACCTTTAACAAATTGAC 59.695 38.462 0.00 0.00 0.00 3.18
1791 5786 6.584942 GGATCGAAACCTTTAACAAATTGACC 59.415 38.462 0.00 0.00 0.00 4.02
1792 5787 5.834169 TCGAAACCTTTAACAAATTGACCC 58.166 37.500 0.00 0.00 0.00 4.46
1793 5788 4.986034 CGAAACCTTTAACAAATTGACCCC 59.014 41.667 0.00 0.00 0.00 4.95
1794 5789 5.452077 CGAAACCTTTAACAAATTGACCCCA 60.452 40.000 0.00 0.00 0.00 4.96
1795 5790 6.508030 AAACCTTTAACAAATTGACCCCAT 57.492 33.333 0.00 0.00 0.00 4.00
1796 5791 6.508030 AACCTTTAACAAATTGACCCCATT 57.492 33.333 0.00 0.00 0.00 3.16
1797 5792 6.508030 ACCTTTAACAAATTGACCCCATTT 57.492 33.333 0.00 0.00 0.00 2.32
1798 5793 7.619512 ACCTTTAACAAATTGACCCCATTTA 57.380 32.000 0.00 0.00 0.00 1.40
1799 5794 8.213489 ACCTTTAACAAATTGACCCCATTTAT 57.787 30.769 0.00 0.00 0.00 1.40
1800 5795 9.327731 ACCTTTAACAAATTGACCCCATTTATA 57.672 29.630 0.00 0.00 0.00 0.98
1810 5805 9.733556 AATTGACCCCATTTATAAAGAAAAACC 57.266 29.630 3.94 0.00 0.00 3.27
1811 5806 7.857404 TGACCCCATTTATAAAGAAAAACCA 57.143 32.000 3.94 0.00 0.00 3.67
1812 5807 7.902087 TGACCCCATTTATAAAGAAAAACCAG 58.098 34.615 3.94 0.00 0.00 4.00
1813 5808 7.038658 TGACCCCATTTATAAAGAAAAACCAGG 60.039 37.037 3.94 0.00 0.00 4.45
1814 5809 6.112734 CCCCATTTATAAAGAAAAACCAGGC 58.887 40.000 3.94 0.00 0.00 4.85
1815 5810 6.070251 CCCCATTTATAAAGAAAAACCAGGCT 60.070 38.462 3.94 0.00 0.00 4.58
1816 5811 6.818142 CCCATTTATAAAGAAAAACCAGGCTG 59.182 38.462 7.75 7.75 0.00 4.85
1817 5812 7.310361 CCCATTTATAAAGAAAAACCAGGCTGA 60.310 37.037 17.94 0.00 0.00 4.26
1818 5813 8.093927 CCATTTATAAAGAAAAACCAGGCTGAA 58.906 33.333 17.94 0.00 0.00 3.02
1819 5814 9.487790 CATTTATAAAGAAAAACCAGGCTGAAA 57.512 29.630 17.94 3.84 0.00 2.69
1821 5816 8.880878 TTATAAAGAAAAACCAGGCTGAAAAC 57.119 30.769 17.94 2.34 0.00 2.43
1822 5817 3.819564 AGAAAAACCAGGCTGAAAACC 57.180 42.857 17.94 0.37 0.00 3.27
1823 5818 3.103742 AGAAAAACCAGGCTGAAAACCA 58.896 40.909 17.94 0.00 0.00 3.67
1824 5819 3.517500 AGAAAAACCAGGCTGAAAACCAA 59.482 39.130 17.94 0.00 0.00 3.67
1830 5825 1.541588 CAGGCTGAAAACCAAGTAGGC 59.458 52.381 9.42 0.00 43.14 3.93
1864 5859 7.840342 AATTGAGTTATCTGTGAGTGATGAC 57.160 36.000 0.00 0.00 32.70 3.06
1869 5864 6.323266 AGTTATCTGTGAGTGATGACGTAAC 58.677 40.000 0.00 0.00 36.13 2.50
1921 5916 5.971202 GTCCGCTTAAATGTGTTCAATATGG 59.029 40.000 0.00 0.00 0.00 2.74
1935 5951 3.758023 TCAATATGGAAAGGTGCTGTGTG 59.242 43.478 0.00 0.00 0.00 3.82
1941 5957 4.211125 TGGAAAGGTGCTGTGTGATTTTA 58.789 39.130 0.00 0.00 0.00 1.52
1945 5964 4.789012 AGGTGCTGTGTGATTTTAATGG 57.211 40.909 0.00 0.00 0.00 3.16
1976 5995 7.777910 TCAGGGATTCTTGTTTTGACTTTTCTA 59.222 33.333 0.00 0.00 0.00 2.10
1977 5996 8.579863 CAGGGATTCTTGTTTTGACTTTTCTAT 58.420 33.333 0.00 0.00 0.00 1.98
1978 5997 9.807921 AGGGATTCTTGTTTTGACTTTTCTATA 57.192 29.630 0.00 0.00 0.00 1.31
1982 6001 9.807921 ATTCTTGTTTTGACTTTTCTATAGGGA 57.192 29.630 0.00 0.00 0.00 4.20
1983 6002 9.635404 TTCTTGTTTTGACTTTTCTATAGGGAA 57.365 29.630 0.00 0.00 0.00 3.97
1984 6003 9.635404 TCTTGTTTTGACTTTTCTATAGGGAAA 57.365 29.630 0.00 1.52 33.98 3.13
1996 6015 9.524496 TTTTCTATAGGGAAAAGGAAAGGTAAC 57.476 33.333 0.00 0.00 39.37 2.50
1997 6016 8.897692 TTTCTATAGGGAAAAGGAAAGGTAACT 58.102 33.333 0.00 0.00 39.51 2.24
2012 6031 4.846779 GGTAACTGTTCAAAGCATGGAA 57.153 40.909 0.00 0.00 0.00 3.53
2013 6032 5.195001 GGTAACTGTTCAAAGCATGGAAA 57.805 39.130 0.00 0.00 0.00 3.13
2014 6033 5.783111 GGTAACTGTTCAAAGCATGGAAAT 58.217 37.500 0.00 0.00 0.00 2.17
2015 6034 5.634859 GGTAACTGTTCAAAGCATGGAAATG 59.365 40.000 0.00 0.00 0.00 2.32
2016 6035 5.534207 AACTGTTCAAAGCATGGAAATGA 57.466 34.783 0.00 0.00 0.00 2.57
2017 6036 5.733620 ACTGTTCAAAGCATGGAAATGAT 57.266 34.783 0.00 0.00 0.00 2.45
2018 6037 5.475719 ACTGTTCAAAGCATGGAAATGATG 58.524 37.500 0.00 0.00 0.00 3.07
2019 6038 5.011329 ACTGTTCAAAGCATGGAAATGATGT 59.989 36.000 0.00 0.00 0.00 3.06
2020 6039 5.231702 TGTTCAAAGCATGGAAATGATGTG 58.768 37.500 0.00 0.00 0.00 3.21
2021 6040 3.852286 TCAAAGCATGGAAATGATGTGC 58.148 40.909 0.00 0.00 36.11 4.57
2024 6043 3.795623 AGCATGGAAATGATGTGCTTC 57.204 42.857 0.00 0.00 43.03 3.86
2025 6044 2.429610 AGCATGGAAATGATGTGCTTCC 59.570 45.455 0.00 0.00 43.03 3.46
2028 6047 3.159213 TGGAAATGATGTGCTTCCAGT 57.841 42.857 0.00 0.00 42.86 4.00
2029 6048 3.499338 TGGAAATGATGTGCTTCCAGTT 58.501 40.909 0.00 0.00 42.86 3.16
2030 6049 3.896888 TGGAAATGATGTGCTTCCAGTTT 59.103 39.130 0.00 0.00 42.86 2.66
2031 6050 4.344679 TGGAAATGATGTGCTTCCAGTTTT 59.655 37.500 0.00 0.00 42.86 2.43
2032 6051 4.687483 GGAAATGATGTGCTTCCAGTTTTG 59.313 41.667 0.00 0.00 38.80 2.44
2033 6052 4.942761 AATGATGTGCTTCCAGTTTTGT 57.057 36.364 0.00 0.00 0.00 2.83
2034 6053 4.942761 ATGATGTGCTTCCAGTTTTGTT 57.057 36.364 0.00 0.00 0.00 2.83
2035 6054 4.305989 TGATGTGCTTCCAGTTTTGTTC 57.694 40.909 0.00 0.00 0.00 3.18
2036 6055 3.698539 TGATGTGCTTCCAGTTTTGTTCA 59.301 39.130 0.00 0.00 0.00 3.18
2037 6056 4.159321 TGATGTGCTTCCAGTTTTGTTCAA 59.841 37.500 0.00 0.00 0.00 2.69
2038 6057 4.734398 TGTGCTTCCAGTTTTGTTCAAT 57.266 36.364 0.00 0.00 0.00 2.57
2039 6058 5.843673 TGTGCTTCCAGTTTTGTTCAATA 57.156 34.783 0.00 0.00 0.00 1.90
2040 6059 6.214191 TGTGCTTCCAGTTTTGTTCAATAA 57.786 33.333 0.00 0.00 0.00 1.40
2041 6060 6.634805 TGTGCTTCCAGTTTTGTTCAATAAA 58.365 32.000 0.00 0.00 0.00 1.40
2042 6061 7.099764 TGTGCTTCCAGTTTTGTTCAATAAAA 58.900 30.769 0.00 0.00 0.00 1.52
2043 6062 7.604164 TGTGCTTCCAGTTTTGTTCAATAAAAA 59.396 29.630 0.00 0.00 0.00 1.94
2044 6063 8.611757 GTGCTTCCAGTTTTGTTCAATAAAAAT 58.388 29.630 0.00 0.00 0.00 1.82
2045 6064 8.825745 TGCTTCCAGTTTTGTTCAATAAAAATC 58.174 29.630 0.00 0.00 0.00 2.17
2046 6065 9.045223 GCTTCCAGTTTTGTTCAATAAAAATCT 57.955 29.630 0.00 0.00 0.00 2.40
2048 6067 9.883142 TTCCAGTTTTGTTCAATAAAAATCTGT 57.117 25.926 8.32 0.00 30.73 3.41
2049 6068 9.883142 TCCAGTTTTGTTCAATAAAAATCTGTT 57.117 25.926 8.32 0.00 30.73 3.16
2056 6075 8.939201 TGTTCAATAAAAATCTGTTTGAAGCA 57.061 26.923 0.00 0.00 37.08 3.91
2057 6076 9.033481 TGTTCAATAAAAATCTGTTTGAAGCAG 57.967 29.630 2.36 2.36 37.08 4.24
2058 6077 9.034544 GTTCAATAAAAATCTGTTTGAAGCAGT 57.965 29.630 8.86 0.00 37.08 4.40
2062 6081 9.643693 AATAAAAATCTGTTTGAAGCAGTATGG 57.356 29.630 8.86 0.00 35.86 2.74
2063 6082 6.899393 AAAATCTGTTTGAAGCAGTATGGA 57.101 33.333 8.86 0.00 35.86 3.41
2064 6083 6.506500 AAATCTGTTTGAAGCAGTATGGAG 57.493 37.500 8.86 0.00 35.86 3.86
2065 6084 4.890158 TCTGTTTGAAGCAGTATGGAGA 57.110 40.909 8.86 0.00 35.86 3.71
2066 6085 4.825422 TCTGTTTGAAGCAGTATGGAGAG 58.175 43.478 8.86 0.00 35.86 3.20
2067 6086 3.937706 CTGTTTGAAGCAGTATGGAGAGG 59.062 47.826 0.50 0.00 35.86 3.69
2068 6087 3.327757 TGTTTGAAGCAGTATGGAGAGGT 59.672 43.478 0.00 0.00 35.86 3.85
2069 6088 3.616956 TTGAAGCAGTATGGAGAGGTG 57.383 47.619 0.00 0.00 35.86 4.00
2070 6089 1.208052 TGAAGCAGTATGGAGAGGTGC 59.792 52.381 0.00 0.00 35.86 5.01
2071 6090 1.484240 GAAGCAGTATGGAGAGGTGCT 59.516 52.381 0.00 0.00 46.35 4.40
2072 6091 0.829333 AGCAGTATGGAGAGGTGCTG 59.171 55.000 0.00 0.00 42.81 4.41
2073 6092 0.826715 GCAGTATGGAGAGGTGCTGA 59.173 55.000 0.00 0.00 35.86 4.26
2074 6093 1.415659 GCAGTATGGAGAGGTGCTGAT 59.584 52.381 0.00 0.00 35.86 2.90
2142 6262 8.934023 TTTGATAACACTTTCCAAATCTAGGT 57.066 30.769 0.00 0.00 0.00 3.08
2148 6268 6.314917 ACACTTTCCAAATCTAGGTTCCATT 58.685 36.000 0.00 0.00 0.00 3.16
2149 6269 6.782494 ACACTTTCCAAATCTAGGTTCCATTT 59.218 34.615 0.00 0.00 0.00 2.32
2174 6294 3.306166 GCCGACAGTTGATACATGTACAC 59.694 47.826 7.96 5.69 0.00 2.90
2175 6295 4.744570 CCGACAGTTGATACATGTACACT 58.255 43.478 7.96 7.94 0.00 3.55
2209 6330 8.525729 AAGATATAAATACAGTGATTCCCCCT 57.474 34.615 0.00 0.00 0.00 4.79
2210 6331 7.922382 AGATATAAATACAGTGATTCCCCCTG 58.078 38.462 0.00 0.00 0.00 4.45
2211 6332 7.739444 AGATATAAATACAGTGATTCCCCCTGA 59.261 37.037 0.00 0.00 0.00 3.86
2214 6335 4.946160 ATACAGTGATTCCCCCTGAAAA 57.054 40.909 0.00 0.00 36.33 2.29
2216 6337 4.132122 ACAGTGATTCCCCCTGAAAATT 57.868 40.909 0.00 0.00 36.33 1.82
2219 6340 5.221702 ACAGTGATTCCCCCTGAAAATTTTG 60.222 40.000 8.47 0.00 36.33 2.44
2220 6341 4.002982 GTGATTCCCCCTGAAAATTTTGC 58.997 43.478 8.47 1.07 36.33 3.68
2221 6342 3.649981 TGATTCCCCCTGAAAATTTTGCA 59.350 39.130 8.47 5.64 36.33 4.08
2225 6346 3.457749 TCCCCCTGAAAATTTTGCAAACT 59.542 39.130 12.39 3.28 0.00 2.66
2226 6347 4.656112 TCCCCCTGAAAATTTTGCAAACTA 59.344 37.500 12.39 0.00 0.00 2.24
2227 6348 4.996758 CCCCCTGAAAATTTTGCAAACTAG 59.003 41.667 12.39 0.77 0.00 2.57
2252 6373 9.698309 AGAGTCCGTTACAATAATATTGATCTG 57.302 33.333 18.78 6.55 0.00 2.90
2281 6402 6.500684 TTCACTTGATAAAGTTCTGGATGC 57.499 37.500 0.00 0.00 0.00 3.91
2328 6451 8.737168 TCAAAACTGACAATGATCCTAATAGG 57.263 34.615 0.00 0.00 36.46 2.57
2329 6452 7.775093 TCAAAACTGACAATGATCCTAATAGGG 59.225 37.037 6.46 0.00 35.59 3.53
2331 6470 4.042187 ACTGACAATGATCCTAATAGGGCC 59.958 45.833 6.46 0.00 35.59 5.80
2332 6471 4.242811 TGACAATGATCCTAATAGGGCCT 58.757 43.478 12.58 12.58 35.59 5.19
2339 6478 5.665701 TGATCCTAATAGGGCCTACATTCT 58.334 41.667 17.19 0.00 35.59 2.40
2348 6487 8.697507 AATAGGGCCTACATTCTTAATTCTTG 57.302 34.615 17.19 0.00 0.00 3.02
2351 6490 7.816411 AGGGCCTACATTCTTAATTCTTGTAT 58.184 34.615 2.82 0.00 0.00 2.29
2392 6532 9.829507 ATAACCTCTCATTTTCAGTAAGATCAG 57.170 33.333 0.00 0.00 0.00 2.90
2457 6830 8.432805 CCCTTGTTCTAGGTAAATAGTCATCAT 58.567 37.037 0.00 0.00 33.17 2.45
2491 6864 6.579666 TGCACAAGCTAGAAATTTTGAGAT 57.420 33.333 0.00 0.00 42.74 2.75
2495 6868 6.012745 ACAAGCTAGAAATTTTGAGATGGGT 58.987 36.000 0.00 0.00 0.00 4.51
2516 6889 5.410924 GGTCCTTAATGAAATTGTTGCCTC 58.589 41.667 0.00 0.00 36.99 4.70
2542 6915 6.866480 TCAGATTCTTATTTGGGATTTGTGC 58.134 36.000 0.00 0.00 0.00 4.57
2633 7011 4.624024 TGCTACTTGTAACATTACAGTCGC 59.376 41.667 15.71 15.71 43.77 5.19
2883 7267 7.060600 TGTTATCAAGCAAATTACTGACTCG 57.939 36.000 0.00 0.00 0.00 4.18
2902 7286 1.202486 CGCGGATAAGTCTTGGGCTAA 60.202 52.381 0.00 0.00 0.00 3.09
2919 7303 3.056821 GGCTAATTTCACCCAAGGACAAC 60.057 47.826 0.00 0.00 0.00 3.32
2961 7345 4.864704 AAGAAGGATATTCGGAGCTCTC 57.135 45.455 14.64 1.43 0.00 3.20
2968 7352 4.082463 GGATATTCGGAGCTCTCGATTCTT 60.082 45.833 22.31 12.90 36.49 2.52
2989 7373 2.238084 TGATGTGGAGCTAGTGAGGT 57.762 50.000 0.00 0.00 35.63 3.85
2994 7378 1.825474 GTGGAGCTAGTGAGGTTGCTA 59.175 52.381 0.00 0.00 35.76 3.49
2998 7382 3.020984 GAGCTAGTGAGGTTGCTACTCT 58.979 50.000 0.00 0.00 35.76 3.24
3000 7384 3.949113 AGCTAGTGAGGTTGCTACTCTAC 59.051 47.826 0.00 0.00 35.98 2.59
3061 7445 5.063944 CACTATGCTGTAGAACATTGTGACC 59.936 44.000 10.82 0.00 46.25 4.02
3110 7494 4.259970 CCTCGAACTTGCAGATGTTAATCG 60.260 45.833 2.57 3.42 37.92 3.34
3119 7503 7.549134 ACTTGCAGATGTTAATCGTAGAAATCA 59.451 33.333 0.00 0.00 43.58 2.57
3160 7544 1.303561 ATTGCTGCCAGGCGAAGAA 60.304 52.632 7.03 0.00 34.52 2.52
3195 7579 6.419791 TCTTGTCTCTGTTTTAACCAAAGGA 58.580 36.000 0.00 0.00 0.00 3.36
3310 7694 3.328050 AGAAGGAAAACCGTCTCCTGAAT 59.672 43.478 3.45 0.00 41.40 2.57
3315 7699 5.661759 AGGAAAACCGTCTCCTGAATATAGT 59.338 40.000 2.04 0.00 40.70 2.12
3353 7737 1.172175 GAGCAAGCTGAAAGAAGGGG 58.828 55.000 0.00 0.00 34.07 4.79
3413 7797 0.878961 GGTGACTGTCAACGTGGGAC 60.879 60.000 12.81 12.36 35.83 4.46
3590 8010 5.930837 TGGAAGGTGTTTTGACTCAATTT 57.069 34.783 0.00 0.00 0.00 1.82
3674 8094 1.063174 GACATCGCTCAAGTGGATTGC 59.937 52.381 0.00 0.00 38.89 3.56
3700 8120 5.576563 TTGGAGTTAACCCTTGATTCTGA 57.423 39.130 0.88 0.00 0.00 3.27
3754 8174 6.470235 GCAACCATTGATCTAAATGAAACTCG 59.530 38.462 7.22 0.00 39.46 4.18
3799 8219 1.965754 GCTCGGATGAGTGCCCTCTT 61.966 60.000 0.00 0.00 44.48 2.85
3837 8260 5.951747 ACACAGATTGCCTTTGTATAACCAT 59.048 36.000 0.00 0.00 34.27 3.55
3839 8262 6.095300 CACAGATTGCCTTTGTATAACCATGA 59.905 38.462 0.00 0.00 0.00 3.07
3852 8275 5.991328 ATAACCATGACGCTTCTACATTG 57.009 39.130 0.00 0.00 0.00 2.82
3858 8281 6.183360 ACCATGACGCTTCTACATTGTTTATG 60.183 38.462 0.00 0.00 40.26 1.90
3949 8473 1.680338 AGCTCAAGTGTGAAACCCAC 58.320 50.000 0.00 0.00 45.88 4.61
4037 8562 2.392933 TTCCGCGTTGTTCAAATGTC 57.607 45.000 4.92 0.00 0.00 3.06
4127 8750 1.298859 GGAGGTTCGGTGACATGCAC 61.299 60.000 10.63 10.63 46.98 4.57
4220 8848 2.503331 ACGGATGACATGACAAAGCAA 58.497 42.857 0.00 0.00 0.00 3.91
4237 8865 3.028850 AGCAACCAGAAATGCATGCTAT 58.971 40.909 20.33 8.01 44.95 2.97
4238 8866 4.209538 AGCAACCAGAAATGCATGCTATA 58.790 39.130 20.33 0.00 44.95 1.31
4239 8867 4.831155 AGCAACCAGAAATGCATGCTATAT 59.169 37.500 20.33 0.44 44.95 0.86
4241 8869 5.404366 GCAACCAGAAATGCATGCTATATTG 59.596 40.000 20.33 11.53 42.12 1.90
4242 8870 6.509656 CAACCAGAAATGCATGCTATATTGT 58.490 36.000 20.33 5.39 0.00 2.71
4243 8871 6.080648 ACCAGAAATGCATGCTATATTGTG 57.919 37.500 20.33 15.21 0.00 3.33
4244 8872 5.010314 ACCAGAAATGCATGCTATATTGTGG 59.990 40.000 25.19 25.19 0.00 4.17
4245 8873 5.242171 CCAGAAATGCATGCTATATTGTGGA 59.758 40.000 23.87 3.29 0.00 4.02
4246 8874 6.379386 CAGAAATGCATGCTATATTGTGGAG 58.621 40.000 20.33 0.00 0.00 3.86
4247 8875 6.016527 CAGAAATGCATGCTATATTGTGGAGT 60.017 38.462 20.33 0.00 0.00 3.85
4248 8876 7.173735 CAGAAATGCATGCTATATTGTGGAGTA 59.826 37.037 20.33 0.00 0.00 2.59
4249 8877 6.808008 AATGCATGCTATATTGTGGAGTAC 57.192 37.500 20.33 0.00 0.00 2.73
4270 8903 8.839310 AGTACAACAATATATCAGATTGGAGC 57.161 34.615 0.00 0.00 38.39 4.70
4283 8916 2.435372 TTGGAGCACAACTGGAAAGT 57.565 45.000 0.00 0.00 33.18 2.66
4284 8917 1.679139 TGGAGCACAACTGGAAAGTG 58.321 50.000 0.00 0.00 36.39 3.16
4289 8922 1.110442 CACAACTGGAAAGTGGCCAA 58.890 50.000 7.24 0.00 34.44 4.52
4291 8924 2.093764 CACAACTGGAAAGTGGCCAAAA 60.094 45.455 7.24 0.00 34.44 2.44
4302 8935 3.667360 AGTGGCCAAAAATTCAGATTGC 58.333 40.909 7.24 0.00 0.00 3.56
4303 8936 3.071312 AGTGGCCAAAAATTCAGATTGCA 59.929 39.130 7.24 0.00 0.00 4.08
4361 8994 1.451067 GAACTCGGTTCTCCTCTCGA 58.549 55.000 8.87 0.00 39.23 4.04
4530 9163 4.404073 ACAAATTTGTGGGAACTTGTAGCA 59.596 37.500 22.71 0.00 40.49 3.49
4531 9164 5.105146 ACAAATTTGTGGGAACTTGTAGCAA 60.105 36.000 22.71 0.00 40.49 3.91
4603 9240 2.536928 GCGTATCAGTTCAATTCGGCAC 60.537 50.000 0.00 0.00 0.00 5.01
4645 9282 4.982916 GGCATGTACTATTCGAGTTAGGTG 59.017 45.833 8.73 4.40 39.81 4.00
4657 9294 2.365617 GAGTTAGGTGCCTAGCTATGCA 59.634 50.000 18.41 18.41 39.59 3.96
4665 9302 2.912295 TGCCTAGCTATGCATATGGGAA 59.088 45.455 18.41 0.68 31.31 3.97
4671 9308 3.906218 AGCTATGCATATGGGAAGAGTGA 59.094 43.478 6.92 0.00 0.00 3.41
4716 9353 3.511477 ACGGTAGCTCTTCCCATATGAT 58.489 45.455 3.65 0.00 0.00 2.45
4788 9425 7.575332 TTGGTTTTCTTTGTTTCTTTCTTCG 57.425 32.000 0.00 0.00 0.00 3.79
4792 9429 7.411480 GGTTTTCTTTGTTTCTTTCTTCGGTTG 60.411 37.037 0.00 0.00 0.00 3.77
4803 9440 2.567985 TCTTCGGTTGTCACCCTTTTC 58.432 47.619 0.00 0.00 40.52 2.29
4809 9446 3.818773 CGGTTGTCACCCTTTTCTTGTAT 59.181 43.478 0.00 0.00 40.52 2.29
4865 9502 9.744468 TTTCCTTTTCTCCTTTTCTTTTTATCG 57.256 29.630 0.00 0.00 0.00 2.92
4877 9514 9.612620 CTTTTCTTTTTATCGCATGTCTACTTT 57.387 29.630 0.00 0.00 0.00 2.66
5155 9799 3.392769 TTTTGGAAACGTGTGAACTCG 57.607 42.857 3.57 3.57 38.62 4.18
5168 9812 6.476380 ACGTGTGAACTCGTTTTAAATGTCTA 59.524 34.615 4.84 0.00 42.42 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.483827 TCCACAGACTGATGATGGAGC 59.516 52.381 10.08 0.00 34.50 4.70
179 186 5.949354 CCAGGAACCACAATATCTTTAACCA 59.051 40.000 0.00 0.00 0.00 3.67
474 4403 7.327975 TCAACTTGAAGTACTTGAGAACTGAA 58.672 34.615 14.14 0.00 0.00 3.02
627 4568 5.584913 ACAGAGATCTCTTTAAGGTCTGGA 58.415 41.667 22.95 0.00 45.91 3.86
755 4702 0.033503 TGTCCTCTCGGCACCATAGA 60.034 55.000 0.00 0.00 0.00 1.98
764 4711 3.067833 GGTTTCTCTTTTGTCCTCTCGG 58.932 50.000 0.00 0.00 0.00 4.63
765 4712 3.991121 GAGGTTTCTCTTTTGTCCTCTCG 59.009 47.826 0.00 0.00 38.56 4.04
768 4715 3.181443 TGGGAGGTTTCTCTTTTGTCCTC 60.181 47.826 0.00 0.00 39.86 3.71
771 4718 2.885266 GGTGGGAGGTTTCTCTTTTGTC 59.115 50.000 0.00 0.00 39.86 3.18
802 4749 3.204827 GGCCATGCGCGACTTGAT 61.205 61.111 12.10 0.00 38.94 2.57
823 4770 0.321653 GGAGTCTCCATTGGCGTTGT 60.322 55.000 14.46 0.00 36.28 3.32
877 4824 0.962489 CCCTCTGTCGAGACACTGTT 59.038 55.000 1.24 0.00 39.74 3.16
1031 5008 0.985490 GGCATCCAGGAAGGGACTCT 60.985 60.000 0.00 0.00 38.49 3.24
1245 5222 1.699054 CCATGAAGGAGATGGCGGGA 61.699 60.000 0.00 0.00 41.22 5.14
1294 5271 3.050275 GGTGAGCACCGCAACCTC 61.050 66.667 3.57 0.00 42.29 3.85
1344 5321 7.443272 TGATATGAAGAAATCATCGCAACAGAT 59.557 33.333 0.00 0.00 45.91 2.90
1431 5414 6.784031 ACTTGATAGTGTTCTTTCCCATTCT 58.216 36.000 0.00 0.00 31.99 2.40
1526 5511 2.736721 CACCAGTTTGACGACTACCATG 59.263 50.000 0.00 0.00 0.00 3.66
1560 5546 5.683876 ATAACTCAACACATCCTAGCACT 57.316 39.130 0.00 0.00 0.00 4.40
1571 5557 8.258708 AGTAGGTATCTCCAAATAACTCAACAC 58.741 37.037 0.00 0.00 39.02 3.32
1598 5584 0.512952 CTAAGTGAGTGTTGCACCGC 59.487 55.000 0.00 0.00 36.95 5.68
1610 5596 7.928873 AGGAATGGATTCTTAAACCTAAGTGA 58.071 34.615 0.00 0.00 36.63 3.41
1621 5610 8.602424 TCAAACTGAGTTAGGAATGGATTCTTA 58.398 33.333 0.00 0.00 37.00 2.10
1667 5662 3.133721 CCCCAGGTGATTGTTGAACAAAA 59.866 43.478 15.31 3.82 41.96 2.44
1668 5663 2.697751 CCCCAGGTGATTGTTGAACAAA 59.302 45.455 15.31 0.00 41.96 2.83
1669 5664 2.091610 TCCCCAGGTGATTGTTGAACAA 60.092 45.455 13.66 13.66 42.95 2.83
1671 5666 2.162681 CTCCCCAGGTGATTGTTGAAC 58.837 52.381 0.00 0.00 0.00 3.18
1673 5668 0.698238 CCTCCCCAGGTGATTGTTGA 59.302 55.000 0.00 0.00 34.60 3.18
1674 5669 0.698238 TCCTCCCCAGGTGATTGTTG 59.302 55.000 0.00 0.00 41.28 3.33
1675 5670 0.995024 CTCCTCCCCAGGTGATTGTT 59.005 55.000 0.00 0.00 41.28 2.83
1676 5671 0.178861 ACTCCTCCCCAGGTGATTGT 60.179 55.000 0.00 0.00 41.28 2.71
1677 5672 0.543749 GACTCCTCCCCAGGTGATTG 59.456 60.000 0.00 0.00 41.28 2.67
1678 5673 0.621862 GGACTCCTCCCCAGGTGATT 60.622 60.000 0.00 0.00 41.28 2.57
1679 5674 1.003573 GGACTCCTCCCCAGGTGAT 59.996 63.158 0.00 0.00 41.28 3.06
1694 5689 6.497259 TGAGTAATATATTCAGGTGGAGGGAC 59.503 42.308 0.00 0.00 0.00 4.46
1696 5691 6.935240 TGAGTAATATATTCAGGTGGAGGG 57.065 41.667 0.00 0.00 0.00 4.30
1697 5692 8.432805 ACTTTGAGTAATATATTCAGGTGGAGG 58.567 37.037 0.00 0.00 0.00 4.30
1700 5695 8.964476 ACACTTTGAGTAATATATTCAGGTGG 57.036 34.615 0.00 0.00 35.96 4.61
1701 5696 9.046296 GGACACTTTGAGTAATATATTCAGGTG 57.954 37.037 0.00 9.43 36.76 4.00
1702 5697 8.768397 TGGACACTTTGAGTAATATATTCAGGT 58.232 33.333 0.00 0.00 0.00 4.00
1703 5698 9.784531 ATGGACACTTTGAGTAATATATTCAGG 57.215 33.333 0.00 0.00 0.00 3.86
1709 5704 9.502091 GGCATAATGGACACTTTGAGTAATATA 57.498 33.333 0.00 0.00 0.00 0.86
1710 5705 7.998383 TGGCATAATGGACACTTTGAGTAATAT 59.002 33.333 0.00 0.00 0.00 1.28
1711 5706 7.342581 TGGCATAATGGACACTTTGAGTAATA 58.657 34.615 0.00 0.00 0.00 0.98
1712 5707 6.186957 TGGCATAATGGACACTTTGAGTAAT 58.813 36.000 0.00 0.00 0.00 1.89
1713 5708 5.565509 TGGCATAATGGACACTTTGAGTAA 58.434 37.500 0.00 0.00 0.00 2.24
1714 5709 5.172687 TGGCATAATGGACACTTTGAGTA 57.827 39.130 0.00 0.00 0.00 2.59
1715 5710 4.012374 CTGGCATAATGGACACTTTGAGT 58.988 43.478 0.00 0.00 0.00 3.41
1716 5711 3.379372 CCTGGCATAATGGACACTTTGAG 59.621 47.826 0.00 0.00 0.00 3.02
1717 5712 3.010027 TCCTGGCATAATGGACACTTTGA 59.990 43.478 0.00 0.00 0.00 2.69
1718 5713 3.355378 TCCTGGCATAATGGACACTTTG 58.645 45.455 0.00 0.00 0.00 2.77
1719 5714 3.266772 TCTCCTGGCATAATGGACACTTT 59.733 43.478 0.00 0.00 0.00 2.66
1720 5715 2.846206 TCTCCTGGCATAATGGACACTT 59.154 45.455 0.00 0.00 0.00 3.16
1721 5716 2.437281 CTCTCCTGGCATAATGGACACT 59.563 50.000 0.00 0.00 0.00 3.55
1722 5717 2.171448 ACTCTCCTGGCATAATGGACAC 59.829 50.000 0.00 0.00 0.00 3.67
1723 5718 2.171237 CACTCTCCTGGCATAATGGACA 59.829 50.000 0.00 0.00 0.00 4.02
1724 5719 2.435805 TCACTCTCCTGGCATAATGGAC 59.564 50.000 0.00 0.00 0.00 4.02
1725 5720 2.763039 TCACTCTCCTGGCATAATGGA 58.237 47.619 0.00 0.00 0.00 3.41
1726 5721 3.558746 GGATCACTCTCCTGGCATAATGG 60.559 52.174 0.00 0.00 32.18 3.16
1727 5722 3.072038 TGGATCACTCTCCTGGCATAATG 59.928 47.826 0.00 0.00 36.20 1.90
1728 5723 3.321039 TGGATCACTCTCCTGGCATAAT 58.679 45.455 0.00 0.00 36.20 1.28
1729 5724 2.702478 CTGGATCACTCTCCTGGCATAA 59.298 50.000 0.00 0.00 36.20 1.90
1730 5725 2.323599 CTGGATCACTCTCCTGGCATA 58.676 52.381 0.00 0.00 36.20 3.14
1731 5726 1.129917 CTGGATCACTCTCCTGGCAT 58.870 55.000 0.00 0.00 36.20 4.40
1732 5727 0.252421 ACTGGATCACTCTCCTGGCA 60.252 55.000 0.00 0.00 38.27 4.92
1733 5728 0.908198 AACTGGATCACTCTCCTGGC 59.092 55.000 0.00 0.00 38.27 4.85
1734 5729 6.463614 CCTTATAAACTGGATCACTCTCCTGG 60.464 46.154 0.00 0.00 38.27 4.45
1735 5730 6.463614 CCCTTATAAACTGGATCACTCTCCTG 60.464 46.154 0.00 0.00 39.46 3.86
1736 5731 5.604650 CCCTTATAAACTGGATCACTCTCCT 59.395 44.000 0.00 0.00 36.20 3.69
1737 5732 5.602978 TCCCTTATAAACTGGATCACTCTCC 59.397 44.000 0.00 0.00 35.74 3.71
1738 5733 6.732896 TCCCTTATAAACTGGATCACTCTC 57.267 41.667 0.00 0.00 0.00 3.20
1739 5734 7.339482 GTTTCCCTTATAAACTGGATCACTCT 58.661 38.462 0.00 0.00 34.66 3.24
1740 5735 6.542735 GGTTTCCCTTATAAACTGGATCACTC 59.457 42.308 0.00 0.00 37.09 3.51
1741 5736 6.424032 GGTTTCCCTTATAAACTGGATCACT 58.576 40.000 0.00 0.00 37.09 3.41
1742 5737 5.296035 CGGTTTCCCTTATAAACTGGATCAC 59.704 44.000 0.00 1.58 38.82 3.06
1743 5738 5.433526 CGGTTTCCCTTATAAACTGGATCA 58.566 41.667 0.00 0.00 38.82 2.92
1748 5743 4.510340 CGATCCGGTTTCCCTTATAAACTG 59.490 45.833 0.00 0.00 41.06 3.16
1749 5744 4.406649 TCGATCCGGTTTCCCTTATAAACT 59.593 41.667 0.00 0.00 37.09 2.66
1750 5745 4.696455 TCGATCCGGTTTCCCTTATAAAC 58.304 43.478 0.00 0.00 36.34 2.01
1751 5746 5.356291 TTCGATCCGGTTTCCCTTATAAA 57.644 39.130 0.00 0.00 0.00 1.40
1752 5747 5.118286 GTTTCGATCCGGTTTCCCTTATAA 58.882 41.667 0.00 0.00 0.00 0.98
1753 5748 4.443315 GGTTTCGATCCGGTTTCCCTTATA 60.443 45.833 0.00 0.00 0.00 0.98
1754 5749 3.538591 GTTTCGATCCGGTTTCCCTTAT 58.461 45.455 0.00 0.00 0.00 1.73
1755 5750 2.355007 GGTTTCGATCCGGTTTCCCTTA 60.355 50.000 0.00 0.00 0.00 2.69
1756 5751 1.612462 GGTTTCGATCCGGTTTCCCTT 60.612 52.381 0.00 0.00 0.00 3.95
1757 5752 0.035725 GGTTTCGATCCGGTTTCCCT 60.036 55.000 0.00 0.00 0.00 4.20
1758 5753 0.035725 AGGTTTCGATCCGGTTTCCC 60.036 55.000 0.00 0.00 0.00 3.97
1759 5754 1.817357 AAGGTTTCGATCCGGTTTCC 58.183 50.000 0.00 0.00 0.00 3.13
1760 5755 4.213906 TGTTAAAGGTTTCGATCCGGTTTC 59.786 41.667 0.00 0.00 0.00 2.78
1761 5756 4.136051 TGTTAAAGGTTTCGATCCGGTTT 58.864 39.130 0.00 0.00 0.00 3.27
1762 5757 3.742385 TGTTAAAGGTTTCGATCCGGTT 58.258 40.909 0.00 0.00 0.00 4.44
1763 5758 3.405823 TGTTAAAGGTTTCGATCCGGT 57.594 42.857 0.00 0.00 0.00 5.28
1764 5759 4.752661 TTTGTTAAAGGTTTCGATCCGG 57.247 40.909 0.00 0.00 0.00 5.14
1765 5760 6.304683 GTCAATTTGTTAAAGGTTTCGATCCG 59.695 38.462 0.00 0.00 0.00 4.18
1766 5761 6.584942 GGTCAATTTGTTAAAGGTTTCGATCC 59.415 38.462 0.00 0.00 0.00 3.36
1767 5762 6.584942 GGGTCAATTTGTTAAAGGTTTCGATC 59.415 38.462 0.00 0.00 0.00 3.69
1768 5763 6.452242 GGGTCAATTTGTTAAAGGTTTCGAT 58.548 36.000 0.00 0.00 0.00 3.59
1769 5764 5.221283 GGGGTCAATTTGTTAAAGGTTTCGA 60.221 40.000 0.00 0.00 0.00 3.71
1770 5765 4.986034 GGGGTCAATTTGTTAAAGGTTTCG 59.014 41.667 0.00 0.00 0.00 3.46
1771 5766 5.919755 TGGGGTCAATTTGTTAAAGGTTTC 58.080 37.500 0.00 0.00 0.00 2.78
1772 5767 5.959583 TGGGGTCAATTTGTTAAAGGTTT 57.040 34.783 0.00 0.00 0.00 3.27
1773 5768 6.508030 AATGGGGTCAATTTGTTAAAGGTT 57.492 33.333 0.00 0.00 0.00 3.50
1774 5769 6.508030 AAATGGGGTCAATTTGTTAAAGGT 57.492 33.333 0.00 0.00 0.00 3.50
1784 5779 9.733556 GGTTTTTCTTTATAAATGGGGTCAATT 57.266 29.630 0.00 0.00 0.00 2.32
1785 5780 8.885346 TGGTTTTTCTTTATAAATGGGGTCAAT 58.115 29.630 0.00 0.00 0.00 2.57
1786 5781 8.263854 TGGTTTTTCTTTATAAATGGGGTCAA 57.736 30.769 0.00 0.00 0.00 3.18
1787 5782 7.038658 CCTGGTTTTTCTTTATAAATGGGGTCA 60.039 37.037 0.00 0.00 0.00 4.02
1788 5783 7.327975 CCTGGTTTTTCTTTATAAATGGGGTC 58.672 38.462 0.00 0.00 0.00 4.46
1789 5784 6.296202 GCCTGGTTTTTCTTTATAAATGGGGT 60.296 38.462 0.00 0.00 0.00 4.95
1790 5785 6.070251 AGCCTGGTTTTTCTTTATAAATGGGG 60.070 38.462 0.00 0.00 0.00 4.96
1791 5786 6.818142 CAGCCTGGTTTTTCTTTATAAATGGG 59.182 38.462 0.00 0.00 0.00 4.00
1792 5787 7.610865 TCAGCCTGGTTTTTCTTTATAAATGG 58.389 34.615 0.00 0.00 0.00 3.16
1793 5788 9.487790 TTTCAGCCTGGTTTTTCTTTATAAATG 57.512 29.630 0.00 0.00 0.00 2.32
1795 5790 9.320352 GTTTTCAGCCTGGTTTTTCTTTATAAA 57.680 29.630 0.00 0.00 0.00 1.40
1796 5791 7.929245 GGTTTTCAGCCTGGTTTTTCTTTATAA 59.071 33.333 0.00 0.00 0.00 0.98
1797 5792 7.070074 TGGTTTTCAGCCTGGTTTTTCTTTATA 59.930 33.333 0.00 0.00 0.00 0.98
1798 5793 6.126911 TGGTTTTCAGCCTGGTTTTTCTTTAT 60.127 34.615 0.00 0.00 0.00 1.40
1799 5794 5.187967 TGGTTTTCAGCCTGGTTTTTCTTTA 59.812 36.000 0.00 0.00 0.00 1.85
1800 5795 4.019771 TGGTTTTCAGCCTGGTTTTTCTTT 60.020 37.500 0.00 0.00 0.00 2.52
1801 5796 3.517500 TGGTTTTCAGCCTGGTTTTTCTT 59.482 39.130 0.00 0.00 0.00 2.52
1802 5797 3.103742 TGGTTTTCAGCCTGGTTTTTCT 58.896 40.909 0.00 0.00 0.00 2.52
1803 5798 3.535280 TGGTTTTCAGCCTGGTTTTTC 57.465 42.857 0.00 0.00 0.00 2.29
1804 5799 3.263170 ACTTGGTTTTCAGCCTGGTTTTT 59.737 39.130 0.00 0.00 0.00 1.94
1805 5800 2.837591 ACTTGGTTTTCAGCCTGGTTTT 59.162 40.909 0.00 0.00 0.00 2.43
1806 5801 2.466846 ACTTGGTTTTCAGCCTGGTTT 58.533 42.857 0.00 0.00 0.00 3.27
1807 5802 2.159179 ACTTGGTTTTCAGCCTGGTT 57.841 45.000 0.00 0.00 0.00 3.67
1808 5803 2.489073 CCTACTTGGTTTTCAGCCTGGT 60.489 50.000 0.00 0.00 0.00 4.00
1809 5804 2.162681 CCTACTTGGTTTTCAGCCTGG 58.837 52.381 0.00 0.00 0.00 4.45
1810 5805 1.541588 GCCTACTTGGTTTTCAGCCTG 59.458 52.381 0.00 0.00 38.35 4.85
1811 5806 1.882352 CGCCTACTTGGTTTTCAGCCT 60.882 52.381 0.00 0.00 38.35 4.58
1812 5807 0.521735 CGCCTACTTGGTTTTCAGCC 59.478 55.000 0.00 0.00 38.35 4.85
1813 5808 1.069227 CACGCCTACTTGGTTTTCAGC 60.069 52.381 0.00 0.00 38.35 4.26
1814 5809 1.535462 CCACGCCTACTTGGTTTTCAG 59.465 52.381 0.00 0.00 38.35 3.02
1815 5810 1.141254 TCCACGCCTACTTGGTTTTCA 59.859 47.619 0.00 0.00 36.59 2.69
1816 5811 1.886886 TCCACGCCTACTTGGTTTTC 58.113 50.000 0.00 0.00 36.59 2.29
1817 5812 2.351706 TTCCACGCCTACTTGGTTTT 57.648 45.000 0.00 0.00 36.59 2.43
1818 5813 2.351706 TTTCCACGCCTACTTGGTTT 57.648 45.000 0.00 0.00 36.59 3.27
1819 5814 2.579410 ATTTCCACGCCTACTTGGTT 57.421 45.000 0.00 0.00 36.59 3.67
1820 5815 2.579410 AATTTCCACGCCTACTTGGT 57.421 45.000 0.00 0.00 36.59 3.67
1821 5816 5.124776 TCAATTAATTTCCACGCCTACTTGG 59.875 40.000 0.00 0.00 36.54 3.61
1822 5817 6.128007 ACTCAATTAATTTCCACGCCTACTTG 60.128 38.462 0.00 0.00 0.00 3.16
1823 5818 5.944007 ACTCAATTAATTTCCACGCCTACTT 59.056 36.000 0.00 0.00 0.00 2.24
1824 5819 5.497474 ACTCAATTAATTTCCACGCCTACT 58.503 37.500 0.00 0.00 0.00 2.57
1830 5825 8.664798 TCACAGATAACTCAATTAATTTCCACG 58.335 33.333 0.00 0.00 0.00 4.94
1860 5855 2.891580 AGAGACACCACAGTTACGTCAT 59.108 45.455 0.00 0.00 0.00 3.06
1863 5858 3.131577 TGAAAGAGACACCACAGTTACGT 59.868 43.478 0.00 0.00 0.00 3.57
1864 5859 3.713288 TGAAAGAGACACCACAGTTACG 58.287 45.455 0.00 0.00 0.00 3.18
1869 5864 4.191544 TGAAACTGAAAGAGACACCACAG 58.808 43.478 0.00 0.00 37.43 3.66
1921 5916 5.634859 CCATTAAAATCACACAGCACCTTTC 59.365 40.000 0.00 0.00 0.00 2.62
1941 5957 7.797121 AAACAAGAATCCCTGAAATACCATT 57.203 32.000 0.00 0.00 0.00 3.16
1945 5964 7.886338 AGTCAAAACAAGAATCCCTGAAATAC 58.114 34.615 0.00 0.00 0.00 1.89
1976 5995 6.464530 ACAGTTACCTTTCCTTTTCCCTAT 57.535 37.500 0.00 0.00 0.00 2.57
1977 5996 5.917545 ACAGTTACCTTTCCTTTTCCCTA 57.082 39.130 0.00 0.00 0.00 3.53
1978 5997 4.808767 ACAGTTACCTTTCCTTTTCCCT 57.191 40.909 0.00 0.00 0.00 4.20
1979 5998 4.891168 TGAACAGTTACCTTTCCTTTTCCC 59.109 41.667 0.00 0.00 0.00 3.97
1980 5999 6.459670 TTGAACAGTTACCTTTCCTTTTCC 57.540 37.500 0.00 0.00 0.00 3.13
1981 6000 6.475727 GCTTTGAACAGTTACCTTTCCTTTTC 59.524 38.462 0.00 0.00 0.00 2.29
1982 6001 6.071051 TGCTTTGAACAGTTACCTTTCCTTTT 60.071 34.615 0.00 0.00 0.00 2.27
1983 6002 5.420739 TGCTTTGAACAGTTACCTTTCCTTT 59.579 36.000 0.00 0.00 0.00 3.11
1984 6003 4.953579 TGCTTTGAACAGTTACCTTTCCTT 59.046 37.500 0.00 0.00 0.00 3.36
1985 6004 4.532834 TGCTTTGAACAGTTACCTTTCCT 58.467 39.130 0.00 0.00 0.00 3.36
1986 6005 4.911514 TGCTTTGAACAGTTACCTTTCC 57.088 40.909 0.00 0.00 0.00 3.13
1987 6006 5.009610 TCCATGCTTTGAACAGTTACCTTTC 59.990 40.000 0.00 0.00 0.00 2.62
1988 6007 4.892934 TCCATGCTTTGAACAGTTACCTTT 59.107 37.500 0.00 0.00 0.00 3.11
1989 6008 4.469657 TCCATGCTTTGAACAGTTACCTT 58.530 39.130 0.00 0.00 0.00 3.50
1990 6009 4.098914 TCCATGCTTTGAACAGTTACCT 57.901 40.909 0.00 0.00 0.00 3.08
1991 6010 4.846779 TTCCATGCTTTGAACAGTTACC 57.153 40.909 0.00 0.00 0.00 2.85
1992 6011 6.446318 TCATTTCCATGCTTTGAACAGTTAC 58.554 36.000 0.00 0.00 0.00 2.50
1993 6012 6.647334 TCATTTCCATGCTTTGAACAGTTA 57.353 33.333 0.00 0.00 0.00 2.24
1994 6013 5.534207 TCATTTCCATGCTTTGAACAGTT 57.466 34.783 0.00 0.00 0.00 3.16
1995 6014 5.011329 ACATCATTTCCATGCTTTGAACAGT 59.989 36.000 0.00 0.00 0.00 3.55
1996 6015 5.347635 CACATCATTTCCATGCTTTGAACAG 59.652 40.000 0.00 0.00 0.00 3.16
1997 6016 5.231702 CACATCATTTCCATGCTTTGAACA 58.768 37.500 0.00 0.00 0.00 3.18
1998 6017 4.092383 GCACATCATTTCCATGCTTTGAAC 59.908 41.667 0.00 0.00 33.44 3.18
1999 6018 4.020928 AGCACATCATTTCCATGCTTTGAA 60.021 37.500 0.00 0.00 44.01 2.69
2000 6019 3.512329 AGCACATCATTTCCATGCTTTGA 59.488 39.130 0.00 0.00 44.01 2.69
2001 6020 3.857052 AGCACATCATTTCCATGCTTTG 58.143 40.909 0.00 0.00 44.01 2.77
2004 6023 5.944646 CTGGAAGCACATCATTTCCATGCT 61.945 45.833 5.72 0.00 46.64 3.79
2005 6024 2.166870 TGGAAGCACATCATTTCCATGC 59.833 45.455 1.27 0.00 43.94 4.06
2006 6025 3.446161 ACTGGAAGCACATCATTTCCATG 59.554 43.478 5.72 3.86 46.64 3.66
2007 6026 3.705051 ACTGGAAGCACATCATTTCCAT 58.295 40.909 5.72 0.00 46.64 3.41
2008 6027 3.159213 ACTGGAAGCACATCATTTCCA 57.841 42.857 5.21 5.21 45.95 3.53
2009 6028 4.525912 AAACTGGAAGCACATCATTTCC 57.474 40.909 0.00 0.00 40.59 3.13
2010 6029 5.291971 ACAAAACTGGAAGCACATCATTTC 58.708 37.500 0.00 0.00 37.60 2.17
2011 6030 5.280654 ACAAAACTGGAAGCACATCATTT 57.719 34.783 0.00 0.00 37.60 2.32
2012 6031 4.942761 ACAAAACTGGAAGCACATCATT 57.057 36.364 0.00 0.00 37.60 2.57
2013 6032 4.341806 TGAACAAAACTGGAAGCACATCAT 59.658 37.500 0.00 0.00 37.60 2.45
2014 6033 3.698539 TGAACAAAACTGGAAGCACATCA 59.301 39.130 0.00 0.00 37.60 3.07
2015 6034 4.305989 TGAACAAAACTGGAAGCACATC 57.694 40.909 0.00 0.00 37.60 3.06
2016 6035 4.734398 TTGAACAAAACTGGAAGCACAT 57.266 36.364 0.00 0.00 37.60 3.21
2017 6036 4.734398 ATTGAACAAAACTGGAAGCACA 57.266 36.364 0.00 0.00 37.60 4.57
2018 6037 7.532682 TTTTATTGAACAAAACTGGAAGCAC 57.467 32.000 0.00 0.00 37.60 4.40
2019 6038 8.729805 ATTTTTATTGAACAAAACTGGAAGCA 57.270 26.923 0.00 0.00 37.60 3.91
2020 6039 9.045223 AGATTTTTATTGAACAAAACTGGAAGC 57.955 29.630 0.00 0.00 37.60 3.86
2022 6041 9.883142 ACAGATTTTTATTGAACAAAACTGGAA 57.117 25.926 4.90 0.00 31.89 3.53
2023 6042 9.883142 AACAGATTTTTATTGAACAAAACTGGA 57.117 25.926 4.90 0.00 31.89 3.86
2030 6049 9.376075 TGCTTCAAACAGATTTTTATTGAACAA 57.624 25.926 0.00 0.00 35.67 2.83
2031 6050 8.939201 TGCTTCAAACAGATTTTTATTGAACA 57.061 26.923 0.00 0.00 35.67 3.18
2032 6051 9.034544 ACTGCTTCAAACAGATTTTTATTGAAC 57.965 29.630 0.00 0.00 38.55 3.18
2036 6055 9.643693 CCATACTGCTTCAAACAGATTTTTATT 57.356 29.630 0.00 0.00 38.55 1.40
2037 6056 9.023962 TCCATACTGCTTCAAACAGATTTTTAT 57.976 29.630 0.00 0.00 38.55 1.40
2038 6057 8.402798 TCCATACTGCTTCAAACAGATTTTTA 57.597 30.769 0.00 0.00 38.55 1.52
2039 6058 7.231317 TCTCCATACTGCTTCAAACAGATTTTT 59.769 33.333 0.00 0.00 38.55 1.94
2040 6059 6.716628 TCTCCATACTGCTTCAAACAGATTTT 59.283 34.615 0.00 0.00 38.55 1.82
2041 6060 6.240894 TCTCCATACTGCTTCAAACAGATTT 58.759 36.000 0.00 0.00 38.55 2.17
2042 6061 5.809001 TCTCCATACTGCTTCAAACAGATT 58.191 37.500 0.00 0.00 38.55 2.40
2043 6062 5.426504 CTCTCCATACTGCTTCAAACAGAT 58.573 41.667 0.00 0.00 38.55 2.90
2044 6063 4.323028 CCTCTCCATACTGCTTCAAACAGA 60.323 45.833 0.00 0.00 38.55 3.41
2045 6064 3.937706 CCTCTCCATACTGCTTCAAACAG 59.062 47.826 0.00 0.00 41.08 3.16
2046 6065 3.327757 ACCTCTCCATACTGCTTCAAACA 59.672 43.478 0.00 0.00 0.00 2.83
2047 6066 3.686726 CACCTCTCCATACTGCTTCAAAC 59.313 47.826 0.00 0.00 0.00 2.93
2048 6067 3.869912 GCACCTCTCCATACTGCTTCAAA 60.870 47.826 0.00 0.00 0.00 2.69
2049 6068 2.355108 GCACCTCTCCATACTGCTTCAA 60.355 50.000 0.00 0.00 0.00 2.69
2050 6069 1.208052 GCACCTCTCCATACTGCTTCA 59.792 52.381 0.00 0.00 0.00 3.02
2051 6070 1.484240 AGCACCTCTCCATACTGCTTC 59.516 52.381 0.00 0.00 34.49 3.86
2052 6071 1.209019 CAGCACCTCTCCATACTGCTT 59.791 52.381 0.00 0.00 36.02 3.91
2053 6072 0.829333 CAGCACCTCTCCATACTGCT 59.171 55.000 0.00 0.00 38.76 4.24
2054 6073 0.826715 TCAGCACCTCTCCATACTGC 59.173 55.000 0.00 0.00 0.00 4.40
2055 6074 4.322574 CCATATCAGCACCTCTCCATACTG 60.323 50.000 0.00 0.00 0.00 2.74
2056 6075 3.837146 CCATATCAGCACCTCTCCATACT 59.163 47.826 0.00 0.00 0.00 2.12
2057 6076 3.580458 ACCATATCAGCACCTCTCCATAC 59.420 47.826 0.00 0.00 0.00 2.39
2058 6077 3.861846 ACCATATCAGCACCTCTCCATA 58.138 45.455 0.00 0.00 0.00 2.74
2059 6078 2.699160 ACCATATCAGCACCTCTCCAT 58.301 47.619 0.00 0.00 0.00 3.41
2060 6079 2.180946 ACCATATCAGCACCTCTCCA 57.819 50.000 0.00 0.00 0.00 3.86
2061 6080 2.965831 TGTACCATATCAGCACCTCTCC 59.034 50.000 0.00 0.00 0.00 3.71
2062 6081 4.564041 CATGTACCATATCAGCACCTCTC 58.436 47.826 0.00 0.00 0.00 3.20
2063 6082 3.244353 GCATGTACCATATCAGCACCTCT 60.244 47.826 0.00 0.00 0.00 3.69
2064 6083 3.070018 GCATGTACCATATCAGCACCTC 58.930 50.000 0.00 0.00 0.00 3.85
2065 6084 2.439135 TGCATGTACCATATCAGCACCT 59.561 45.455 0.00 0.00 0.00 4.00
2066 6085 2.849942 TGCATGTACCATATCAGCACC 58.150 47.619 0.00 0.00 0.00 5.01
2067 6086 4.067192 TGATGCATGTACCATATCAGCAC 58.933 43.478 2.46 0.00 32.92 4.40
2068 6087 4.354893 TGATGCATGTACCATATCAGCA 57.645 40.909 2.46 0.00 34.78 4.41
2069 6088 5.413523 TCATTGATGCATGTACCATATCAGC 59.586 40.000 2.46 0.00 0.00 4.26
2070 6089 7.625828 ATCATTGATGCATGTACCATATCAG 57.374 36.000 2.46 0.00 0.00 2.90
2071 6090 7.771826 CCTATCATTGATGCATGTACCATATCA 59.228 37.037 2.46 0.00 0.00 2.15
2072 6091 7.255035 GCCTATCATTGATGCATGTACCATATC 60.255 40.741 2.46 0.00 0.00 1.63
2073 6092 6.544931 GCCTATCATTGATGCATGTACCATAT 59.455 38.462 2.46 0.00 0.00 1.78
2074 6093 5.882000 GCCTATCATTGATGCATGTACCATA 59.118 40.000 2.46 0.00 0.00 2.74
2091 6211 4.650734 TGTTTGTCATGAACTGCCTATCA 58.349 39.130 0.00 0.00 0.00 2.15
2125 6245 6.840780 AATGGAACCTAGATTTGGAAAGTG 57.159 37.500 0.00 0.00 0.00 3.16
2142 6262 3.680490 TCAACTGTCGGCATAAATGGAA 58.320 40.909 0.00 0.00 0.00 3.53
2148 6268 4.765273 ACATGTATCAACTGTCGGCATAA 58.235 39.130 0.00 0.00 0.00 1.90
2149 6269 4.400529 ACATGTATCAACTGTCGGCATA 57.599 40.909 0.00 0.00 0.00 3.14
2201 6322 4.720775 TTGCAAAATTTTCAGGGGGAAT 57.279 36.364 0.00 0.00 34.91 3.01
2204 6325 3.819368 AGTTTGCAAAATTTTCAGGGGG 58.181 40.909 14.67 0.00 0.00 5.40
2205 6326 5.852827 TCTAGTTTGCAAAATTTTCAGGGG 58.147 37.500 18.18 0.00 0.00 4.79
2209 6330 6.183360 ACGGACTCTAGTTTGCAAAATTTTCA 60.183 34.615 18.18 0.00 0.00 2.69
2210 6331 6.206498 ACGGACTCTAGTTTGCAAAATTTTC 58.794 36.000 18.18 8.78 0.00 2.29
2211 6332 6.144078 ACGGACTCTAGTTTGCAAAATTTT 57.856 33.333 18.18 0.00 0.00 1.82
2214 6335 5.761234 TGTAACGGACTCTAGTTTGCAAAAT 59.239 36.000 17.11 17.11 0.00 1.82
2216 6337 4.695396 TGTAACGGACTCTAGTTTGCAAA 58.305 39.130 8.05 8.05 0.00 3.68
2219 6340 6.956299 TTATTGTAACGGACTCTAGTTTGC 57.044 37.500 0.00 0.00 0.00 3.68
2226 6347 9.698309 CAGATCAATATTATTGTAACGGACTCT 57.302 33.333 14.48 4.87 0.00 3.24
2227 6348 8.926710 CCAGATCAATATTATTGTAACGGACTC 58.073 37.037 14.48 3.23 0.00 3.36
2252 6373 6.918022 CCAGAACTTTATCAAGTGAAAACACC 59.082 38.462 0.00 0.00 42.89 4.16
2265 6386 3.684788 ACACACGCATCCAGAACTTTATC 59.315 43.478 0.00 0.00 0.00 1.75
2274 6395 0.879839 TCACACACACACGCATCCAG 60.880 55.000 0.00 0.00 0.00 3.86
2281 6402 3.673746 ATTTCACTTCACACACACACG 57.326 42.857 0.00 0.00 0.00 4.49
2324 6447 7.816411 ACAAGAATTAAGAATGTAGGCCCTAT 58.184 34.615 0.00 0.00 0.00 2.57
2327 6450 9.000486 GTATACAAGAATTAAGAATGTAGGCCC 58.000 37.037 0.00 0.00 30.76 5.80
2328 6451 9.555727 TGTATACAAGAATTAAGAATGTAGGCC 57.444 33.333 2.20 0.00 30.76 5.19
2351 6490 8.721133 TGAGAGGTTATGGAGCTAAATATGTA 57.279 34.615 0.00 0.00 35.91 2.29
2357 6496 7.402054 TGAAAATGAGAGGTTATGGAGCTAAA 58.598 34.615 0.00 0.00 35.91 1.85
2392 6532 5.685728 ACTGCCCCTTAAGAGAATATTCAC 58.314 41.667 17.56 11.26 0.00 3.18
2491 6864 4.020662 GGCAACAATTTCATTAAGGACCCA 60.021 41.667 0.00 0.00 0.00 4.51
2495 6868 6.493115 TGAAGAGGCAACAATTTCATTAAGGA 59.507 34.615 0.00 0.00 41.41 3.36
2516 6889 7.490402 GCACAAATCCCAAATAAGAATCTGAAG 59.510 37.037 0.00 0.00 0.00 3.02
2542 6915 5.049198 TGCAGCAAAGTCAGAACTATGAAAG 60.049 40.000 0.00 0.00 33.48 2.62
2633 7011 1.580439 CGTCTCAACGCGAAACAATG 58.420 50.000 15.93 1.62 42.82 2.82
2883 7267 2.614829 TTAGCCCAAGACTTATCCGC 57.385 50.000 0.00 0.00 0.00 5.54
2902 7286 1.144093 TCCGTTGTCCTTGGGTGAAAT 59.856 47.619 0.00 0.00 0.00 2.17
2911 7295 4.360951 TGTTAGGAAATCCGTTGTCCTT 57.639 40.909 0.01 0.00 42.00 3.36
2919 7303 7.372451 TCTTACATGTTTGTTAGGAAATCCG 57.628 36.000 2.30 0.00 37.97 4.18
2950 7334 3.883489 TCATAAGAATCGAGAGCTCCGAA 59.117 43.478 24.44 12.63 39.62 4.30
2953 7337 4.922692 CACATCATAAGAATCGAGAGCTCC 59.077 45.833 10.93 0.68 0.00 4.70
2961 7345 5.632764 CACTAGCTCCACATCATAAGAATCG 59.367 44.000 0.00 0.00 0.00 3.34
2968 7352 3.916035 ACCTCACTAGCTCCACATCATA 58.084 45.455 0.00 0.00 0.00 2.15
2989 7373 1.476891 CTGCCCTTCGTAGAGTAGCAA 59.523 52.381 0.00 0.00 38.43 3.91
2994 7378 2.803030 TAGTCTGCCCTTCGTAGAGT 57.197 50.000 0.00 0.00 39.83 3.24
2998 7382 4.021229 TCAAGATTAGTCTGCCCTTCGTA 58.979 43.478 0.00 0.00 34.13 3.43
3000 7384 3.526931 TCAAGATTAGTCTGCCCTTCG 57.473 47.619 0.00 0.00 34.13 3.79
3061 7445 5.278169 CCAGAAGTTCTGTTGTGATCTTTGG 60.278 44.000 27.07 8.09 42.80 3.28
3088 7472 4.327357 ACGATTAACATCTGCAAGTTCGAG 59.673 41.667 10.98 3.19 33.76 4.04
3092 7476 7.667043 TTTCTACGATTAACATCTGCAAGTT 57.333 32.000 0.00 4.55 33.76 2.66
3119 7503 9.003658 CAATGTGAAGAACAGTATAACCTCTTT 57.996 33.333 0.00 0.00 43.64 2.52
3237 7621 7.121168 TGTTTTGTGAGTCTCTTTGAGATTTGT 59.879 33.333 0.65 0.00 40.98 2.83
3315 7699 5.683681 TGCTCCAGTATCTCAATGCATAAA 58.316 37.500 0.00 0.00 0.00 1.40
3413 7797 0.238289 ATTTTCGAGGTGCAACAGCG 59.762 50.000 3.64 7.72 39.98 5.18
3674 8094 5.770162 AGAATCAAGGGTTAACTCCAAAGTG 59.230 40.000 0.61 1.92 35.36 3.16
3714 8134 1.542547 GGTTGCCACTTCTTTCTCCGA 60.543 52.381 0.00 0.00 0.00 4.55
3726 8146 5.581126 TCATTTAGATCAATGGTTGCCAC 57.419 39.130 6.06 0.00 35.80 5.01
3754 8174 5.519722 AGTGTTCGTCATTCATTTGGAAAC 58.480 37.500 0.00 0.00 39.39 2.78
3799 8219 3.904800 TCTGTGTCTCACCTGTTTTGA 57.095 42.857 0.00 0.00 32.73 2.69
3928 8353 3.073062 AGTGGGTTTCACACTTGAGCTAT 59.927 43.478 0.00 0.00 46.38 2.97
3934 8359 4.073293 AGACTAGTGGGTTTCACACTTG 57.927 45.455 9.91 10.42 46.38 3.16
3949 8473 6.072175 GCAGTTAGTCCAGATCCATAGACTAG 60.072 46.154 10.06 0.00 41.49 2.57
4053 8578 1.284198 AGCCAGCTCAGGTTCATCATT 59.716 47.619 0.00 0.00 0.00 2.57
4127 8750 1.016130 ATGCCTTCTGAAGCGTGTCG 61.016 55.000 11.93 0.00 0.00 4.35
4131 8754 1.446907 CTGAATGCCTTCTGAAGCGT 58.553 50.000 11.93 6.35 33.45 5.07
4220 8848 5.010314 CCACAATATAGCATGCATTTCTGGT 59.990 40.000 21.98 6.72 0.00 4.00
4241 8869 8.993121 CCAATCTGATATATTGTTGTACTCCAC 58.007 37.037 0.00 0.00 33.37 4.02
4242 8870 8.933653 TCCAATCTGATATATTGTTGTACTCCA 58.066 33.333 0.00 0.00 33.37 3.86
4243 8871 9.429359 CTCCAATCTGATATATTGTTGTACTCC 57.571 37.037 0.00 0.00 33.37 3.85
4244 8872 8.930760 GCTCCAATCTGATATATTGTTGTACTC 58.069 37.037 0.00 0.00 33.37 2.59
4245 8873 8.432013 TGCTCCAATCTGATATATTGTTGTACT 58.568 33.333 0.00 0.00 33.37 2.73
4246 8874 8.499162 GTGCTCCAATCTGATATATTGTTGTAC 58.501 37.037 0.00 0.00 33.37 2.90
4247 8875 8.210265 TGTGCTCCAATCTGATATATTGTTGTA 58.790 33.333 0.00 0.00 33.37 2.41
4248 8876 7.056006 TGTGCTCCAATCTGATATATTGTTGT 58.944 34.615 0.00 0.00 33.37 3.32
4249 8877 7.500720 TGTGCTCCAATCTGATATATTGTTG 57.499 36.000 0.00 0.00 33.37 3.33
4270 8903 1.110442 TTGGCCACTTTCCAGTTGTG 58.890 50.000 3.88 0.00 34.66 3.33
4283 8916 3.401182 GTGCAATCTGAATTTTTGGCCA 58.599 40.909 0.00 0.00 0.00 5.36
4284 8917 2.743664 GGTGCAATCTGAATTTTTGGCC 59.256 45.455 0.00 0.00 0.00 5.36
4355 8988 4.617808 TGTAGAAGGTTCGATTCGAGAG 57.382 45.455 8.98 0.00 37.14 3.20
4361 8994 4.385825 TGCAGTTTGTAGAAGGTTCGATT 58.614 39.130 0.00 0.00 0.00 3.34
4391 9024 5.971763 TGTTAACTGCAGTTCCAAACAATT 58.028 33.333 34.29 10.45 39.31 2.32
4412 9045 4.277174 TGAACATGTTCTGGCGTTAAATGT 59.723 37.500 32.57 0.00 40.14 2.71
4586 9223 0.447801 GCGTGCCGAATTGAACTGAT 59.552 50.000 0.00 0.00 0.00 2.90
4603 9240 3.436704 TGCCAAGAAGAATTAGTTGAGCG 59.563 43.478 0.00 0.00 0.00 5.03
4645 9282 3.198635 TCTTCCCATATGCATAGCTAGGC 59.801 47.826 22.99 22.99 0.00 3.93
4681 9318 3.954904 AGCTACCGTATGACAAGTGAGAT 59.045 43.478 0.00 0.00 0.00 2.75
4762 9399 8.491950 CGAAGAAAGAAACAAAGAAAACCAAAA 58.508 29.630 0.00 0.00 0.00 2.44
4767 9404 7.115805 ACAACCGAAGAAAGAAACAAAGAAAAC 59.884 33.333 0.00 0.00 0.00 2.43
4788 9425 5.068591 ACAATACAAGAAAAGGGTGACAACC 59.931 40.000 0.00 0.00 46.81 3.77
4792 9429 7.489160 AGAAAACAATACAAGAAAAGGGTGAC 58.511 34.615 0.00 0.00 0.00 3.67
4839 9476 9.744468 CGATAAAAAGAAAAGGAGAAAAGGAAA 57.256 29.630 0.00 0.00 0.00 3.13
4843 9480 8.642020 CATGCGATAAAAAGAAAAGGAGAAAAG 58.358 33.333 0.00 0.00 0.00 2.27
4847 9484 6.655003 AGACATGCGATAAAAAGAAAAGGAGA 59.345 34.615 0.00 0.00 0.00 3.71
5107 9751 8.864069 ATTTCACGATTACAAAAATGTCAACA 57.136 26.923 0.00 0.00 0.00 3.33
5120 9764 9.120422 ACGTTTCCAAAAATATTTCACGATTAC 57.880 29.630 0.10 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.