Multiple sequence alignment - TraesCS4A01G469900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G469900 chr4A 100.000 4458 0 0 1 4458 731341484 731337027 0.000000e+00 8233
1 TraesCS4A01G469900 chr7A 88.134 2722 224 47 1234 3909 8914954 8917622 0.000000e+00 3145
2 TraesCS4A01G469900 chr7A 98.192 553 9 1 3907 4458 18548851 18548299 0.000000e+00 965
3 TraesCS4A01G469900 chr7A 98.007 552 10 1 3907 4458 541455380 541455930 0.000000e+00 957
4 TraesCS4A01G469900 chr7A 96.820 566 16 2 3894 4458 629006081 629006645 0.000000e+00 944
5 TraesCS4A01G469900 chr7A 80.236 592 66 27 619 1197 8914395 8914948 8.980000e-107 398
6 TraesCS4A01G469900 chr7D 87.242 2712 231 53 1239 3909 8478607 8481244 0.000000e+00 2985
7 TraesCS4A01G469900 chr7D 78.571 644 83 30 572 1207 8478009 8478605 1.510000e-99 374
8 TraesCS4A01G469900 chr1A 97.830 553 11 1 3907 4458 577427280 577427832 0.000000e+00 953
9 TraesCS4A01G469900 chr7B 97.818 550 11 1 3910 4458 383160550 383161099 0.000000e+00 948
10 TraesCS4A01G469900 chr7B 97.445 548 14 0 3909 4456 589099360 589098813 0.000000e+00 935
11 TraesCS4A01G469900 chr1B 97.641 551 13 0 3908 4458 426278097 426278647 0.000000e+00 946
12 TraesCS4A01G469900 chr4B 97.464 552 13 1 3907 4458 469037596 469038146 0.000000e+00 941
13 TraesCS4A01G469900 chr4B 85.851 523 68 6 17 538 481491754 481491237 6.520000e-153 551
14 TraesCS4A01G469900 chr2B 97.278 551 14 1 3906 4456 438360913 438361462 0.000000e+00 933
15 TraesCS4A01G469900 chr2B 85.343 539 76 3 1 538 787078029 787077493 5.040000e-154 555
16 TraesCS4A01G469900 chr2B 85.213 541 73 5 1 538 198516168 198515632 2.340000e-152 549
17 TraesCS4A01G469900 chr2A 87.013 539 64 4 1 538 459549008 459549541 1.770000e-168 603
18 TraesCS4A01G469900 chr5B 85.952 541 68 7 1 536 642817758 642818295 5.000000e-159 571
19 TraesCS4A01G469900 chr3A 86.460 517 67 3 23 538 559604065 559603551 8.370000e-157 564
20 TraesCS4A01G469900 chr3A 85.421 535 73 5 5 538 43639154 43639684 6.520000e-153 551
21 TraesCS4A01G469900 chr5D 85.370 540 76 3 1 539 481520066 481520603 1.400000e-154 556
22 TraesCS4A01G469900 chr1D 85.370 540 73 4 1 539 424924415 424924949 5.040000e-154 555


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G469900 chr4A 731337027 731341484 4457 True 8233.0 8233 100.0000 1 4458 1 chr4A.!!$R1 4457
1 TraesCS4A01G469900 chr7A 8914395 8917622 3227 False 1771.5 3145 84.1850 619 3909 2 chr7A.!!$F3 3290
2 TraesCS4A01G469900 chr7A 18548299 18548851 552 True 965.0 965 98.1920 3907 4458 1 chr7A.!!$R1 551
3 TraesCS4A01G469900 chr7A 541455380 541455930 550 False 957.0 957 98.0070 3907 4458 1 chr7A.!!$F1 551
4 TraesCS4A01G469900 chr7A 629006081 629006645 564 False 944.0 944 96.8200 3894 4458 1 chr7A.!!$F2 564
5 TraesCS4A01G469900 chr7D 8478009 8481244 3235 False 1679.5 2985 82.9065 572 3909 2 chr7D.!!$F1 3337
6 TraesCS4A01G469900 chr1A 577427280 577427832 552 False 953.0 953 97.8300 3907 4458 1 chr1A.!!$F1 551
7 TraesCS4A01G469900 chr7B 383160550 383161099 549 False 948.0 948 97.8180 3910 4458 1 chr7B.!!$F1 548
8 TraesCS4A01G469900 chr7B 589098813 589099360 547 True 935.0 935 97.4450 3909 4456 1 chr7B.!!$R1 547
9 TraesCS4A01G469900 chr1B 426278097 426278647 550 False 946.0 946 97.6410 3908 4458 1 chr1B.!!$F1 550
10 TraesCS4A01G469900 chr4B 469037596 469038146 550 False 941.0 941 97.4640 3907 4458 1 chr4B.!!$F1 551
11 TraesCS4A01G469900 chr4B 481491237 481491754 517 True 551.0 551 85.8510 17 538 1 chr4B.!!$R1 521
12 TraesCS4A01G469900 chr2B 438360913 438361462 549 False 933.0 933 97.2780 3906 4456 1 chr2B.!!$F1 550
13 TraesCS4A01G469900 chr2B 787077493 787078029 536 True 555.0 555 85.3430 1 538 1 chr2B.!!$R2 537
14 TraesCS4A01G469900 chr2B 198515632 198516168 536 True 549.0 549 85.2130 1 538 1 chr2B.!!$R1 537
15 TraesCS4A01G469900 chr2A 459549008 459549541 533 False 603.0 603 87.0130 1 538 1 chr2A.!!$F1 537
16 TraesCS4A01G469900 chr5B 642817758 642818295 537 False 571.0 571 85.9520 1 536 1 chr5B.!!$F1 535
17 TraesCS4A01G469900 chr3A 559603551 559604065 514 True 564.0 564 86.4600 23 538 1 chr3A.!!$R1 515
18 TraesCS4A01G469900 chr3A 43639154 43639684 530 False 551.0 551 85.4210 5 538 1 chr3A.!!$F1 533
19 TraesCS4A01G469900 chr5D 481520066 481520603 537 False 556.0 556 85.3700 1 539 1 chr5D.!!$F1 538
20 TraesCS4A01G469900 chr1D 424924415 424924949 534 False 555.0 555 85.3700 1 539 1 chr1D.!!$F1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 213 0.035820 GTGTTGCCCCGGTCTGATTA 60.036 55.0 0.00 0.0 0.00 1.75 F
570 578 0.107831 TACAACGGGCCCTGCATATC 59.892 55.0 22.43 0.0 0.00 1.63 F
1228 1269 0.108520 TGGTGGACCGTCTTATTCGC 60.109 55.0 0.00 0.0 39.43 4.70 F
2444 2512 0.102300 GGGCGTTCCAACAATATGGC 59.898 55.0 0.00 0.0 40.46 4.40 F
3275 3348 0.038251 TGGCTACTCAAGTCTGCACG 60.038 55.0 9.30 0.0 32.04 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1250 0.108520 GCGAATAAGACGGTCCACCA 60.109 55.0 4.14 0.0 35.14 4.17 R
1914 1978 0.242017 AAAACAAGATGCAGCTCGGC 59.758 50.0 4.22 0.0 0.00 5.54 R
3209 3282 0.849417 AAGGAGGATGGGATGAAGCC 59.151 55.0 0.00 0.0 0.00 4.35 R
3322 3395 0.030638 GTGATGCAAACGCCTGTTGT 59.969 50.0 0.00 0.0 38.62 3.32 R
4268 4362 1.263356 CACGTACTGGAAGAAGGGGA 58.737 55.0 0.00 0.0 37.43 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.562942 TGGGAGGTAGTCTAGAAGCGA 59.437 52.381 0.00 0.00 0.00 4.93
49 50 3.884091 GGAGGTAGTCTAGAAGCGAATGA 59.116 47.826 0.00 0.00 0.00 2.57
51 52 5.163540 GGAGGTAGTCTAGAAGCGAATGAAA 60.164 44.000 0.00 0.00 0.00 2.69
76 77 4.159901 TCTGCATCGGCGGCATCA 62.160 61.111 10.53 2.10 46.35 3.07
126 127 2.099756 GTGGTACGTGGATGGTAGGTAC 59.900 54.545 0.00 0.00 38.18 3.34
130 131 1.064758 ACGTGGATGGTAGGTACGGTA 60.065 52.381 0.00 0.00 38.92 4.02
158 159 1.269166 CGACGTCTTAGTCATGTGGC 58.731 55.000 14.70 0.00 40.98 5.01
163 164 0.973632 TCTTAGTCATGTGGCGGTGT 59.026 50.000 0.00 0.00 0.00 4.16
192 193 3.375239 TTCGATGGCGTGTCCGGA 61.375 61.111 0.00 0.00 38.98 5.14
212 213 0.035820 GTGTTGCCCCGGTCTGATTA 60.036 55.000 0.00 0.00 0.00 1.75
231 233 7.118680 TCTGATTAGTTCAACGGTATGGTTTTC 59.881 37.037 0.00 0.00 32.78 2.29
290 295 3.381983 AGTGATGGAGCCGCGTCA 61.382 61.111 4.92 0.00 0.00 4.35
371 378 2.591715 GCAGGTGACAGGCGTTGT 60.592 61.111 0.00 0.00 44.55 3.32
374 381 2.186826 AGGTGACAGGCGTTGTTGC 61.187 57.895 0.00 0.00 41.05 4.17
402 409 3.893200 TCAGAGGTTTCTTCGGTCTTGTA 59.107 43.478 0.00 0.00 0.00 2.41
427 435 3.792401 AGTTTTACTTTTTGGCTGGTGC 58.208 40.909 0.00 0.00 38.76 5.01
477 485 6.337356 TGCTATTTATTTAGTTTTGCCAGGC 58.663 36.000 3.66 3.66 0.00 4.85
484 492 0.621609 AGTTTTGCCAGGCCGGTATA 59.378 50.000 9.64 3.66 36.97 1.47
495 503 3.503363 CAGGCCGGTATATACGTGACTTA 59.497 47.826 1.90 0.00 0.00 2.24
500 508 6.127897 GGCCGGTATATACGTGACTTATACTT 60.128 42.308 1.90 0.00 32.10 2.24
562 570 3.388345 TTTTCAAAATACAACGGGCCC 57.612 42.857 13.57 13.57 0.00 5.80
563 571 2.296073 TTCAAAATACAACGGGCCCT 57.704 45.000 22.43 2.64 0.00 5.19
564 572 1.540267 TCAAAATACAACGGGCCCTG 58.460 50.000 22.43 15.46 0.00 4.45
565 573 0.108851 CAAAATACAACGGGCCCTGC 60.109 55.000 22.43 0.00 0.00 4.85
566 574 0.540830 AAAATACAACGGGCCCTGCA 60.541 50.000 22.43 2.71 0.00 4.41
567 575 0.324275 AAATACAACGGGCCCTGCAT 60.324 50.000 22.43 5.46 0.00 3.96
568 576 0.548989 AATACAACGGGCCCTGCATA 59.451 50.000 22.43 7.71 0.00 3.14
569 577 0.771127 ATACAACGGGCCCTGCATAT 59.229 50.000 22.43 9.85 0.00 1.78
570 578 0.107831 TACAACGGGCCCTGCATATC 59.892 55.000 22.43 0.00 0.00 1.63
576 584 1.302033 GGCCCTGCATATCGACCAG 60.302 63.158 0.00 0.00 0.00 4.00
593 601 4.440663 CGACCAGAGAGAGCATATGTTTGA 60.441 45.833 4.29 0.00 0.00 2.69
597 605 6.183360 ACCAGAGAGAGCATATGTTTGACTAG 60.183 42.308 4.29 0.00 0.00 2.57
598 606 6.040278 CCAGAGAGAGCATATGTTTGACTAGA 59.960 42.308 4.29 0.00 0.00 2.43
601 609 6.991938 AGAGAGCATATGTTTGACTAGATCC 58.008 40.000 4.29 0.00 0.00 3.36
602 610 6.014669 AGAGAGCATATGTTTGACTAGATCCC 60.015 42.308 4.29 0.00 0.00 3.85
604 612 3.997021 GCATATGTTTGACTAGATCCCGG 59.003 47.826 4.29 0.00 0.00 5.73
605 613 2.622064 ATGTTTGACTAGATCCCGGC 57.378 50.000 0.00 0.00 0.00 6.13
620 628 2.864028 CGGCGTACGGCTAGTTAAG 58.136 57.895 34.57 16.79 42.94 1.85
621 629 0.378257 CGGCGTACGGCTAGTTAAGA 59.622 55.000 34.57 0.00 42.94 2.10
622 630 1.002033 CGGCGTACGGCTAGTTAAGAT 60.002 52.381 34.57 0.00 42.94 2.40
623 631 2.391879 GGCGTACGGCTAGTTAAGATG 58.608 52.381 31.97 0.00 42.94 2.90
624 632 2.033801 GGCGTACGGCTAGTTAAGATGA 59.966 50.000 31.97 0.00 42.94 2.92
626 634 4.107622 GCGTACGGCTAGTTAAGATGAAA 58.892 43.478 18.39 0.00 39.11 2.69
627 635 4.743644 GCGTACGGCTAGTTAAGATGAAAT 59.256 41.667 18.39 0.00 39.11 2.17
628 636 5.332355 GCGTACGGCTAGTTAAGATGAAATG 60.332 44.000 18.39 0.00 39.11 2.32
629 637 5.175126 CGTACGGCTAGTTAAGATGAAATGG 59.825 44.000 7.57 0.00 0.00 3.16
670 678 2.490903 AGTGGCAAAAGCTAAGATGCAG 59.509 45.455 12.93 0.00 40.51 4.41
676 684 2.618442 AAGCTAAGATGCAGCCTCTC 57.382 50.000 0.00 0.00 39.99 3.20
677 685 1.493861 AGCTAAGATGCAGCCTCTCA 58.506 50.000 0.00 0.00 39.99 3.27
680 688 2.548875 CTAAGATGCAGCCTCTCACAC 58.451 52.381 0.00 0.00 0.00 3.82
682 690 0.249676 AGATGCAGCCTCTCACACTG 59.750 55.000 0.00 0.00 34.48 3.66
687 695 0.390492 CAGCCTCTCACACTGACACA 59.610 55.000 0.00 0.00 33.10 3.72
714 722 4.809673 TCGGTGTGCATGTAGATGATATC 58.190 43.478 3.61 0.00 0.00 1.63
773 785 3.120546 CGAGACCACACAAGTGCATAAAG 60.121 47.826 0.00 0.00 44.53 1.85
778 790 4.277423 ACCACACAAGTGCATAAAGGTAAC 59.723 41.667 0.00 0.00 44.53 2.50
797 809 0.166814 CGCAAGAGCAAGTGTAAGCC 59.833 55.000 0.00 0.00 42.27 4.35
799 811 1.068954 GCAAGAGCAAGTGTAAGCCAC 60.069 52.381 0.00 0.00 41.84 5.01
800 812 1.537202 CAAGAGCAAGTGTAAGCCACC 59.463 52.381 0.00 0.00 45.74 4.61
802 814 1.142870 AGAGCAAGTGTAAGCCACCAA 59.857 47.619 0.00 0.00 45.74 3.67
820 834 3.846588 ACCAACTCTCTCTCTCTCTCTCT 59.153 47.826 0.00 0.00 0.00 3.10
821 835 4.080863 ACCAACTCTCTCTCTCTCTCTCTC 60.081 50.000 0.00 0.00 0.00 3.20
822 836 4.163078 CCAACTCTCTCTCTCTCTCTCTCT 59.837 50.000 0.00 0.00 0.00 3.10
823 837 5.355596 CAACTCTCTCTCTCTCTCTCTCTC 58.644 50.000 0.00 0.00 0.00 3.20
824 838 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
825 839 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
826 840 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
827 841 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
828 842 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
829 843 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
830 844 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
831 845 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
832 846 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
833 847 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
834 848 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
835 849 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
836 850 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
837 851 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
838 852 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
839 853 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
851 865 2.038659 CTCTCTCTCCCCTTAGCTTGG 58.961 57.143 0.00 0.00 0.00 3.61
871 885 5.432680 TGGAATTCTTCTCTCTTCATGCT 57.567 39.130 5.23 0.00 0.00 3.79
880 894 3.007635 CTCTCTTCATGCTTGCATGTCA 58.992 45.455 27.80 17.89 34.39 3.58
882 896 4.014406 TCTCTTCATGCTTGCATGTCAAT 58.986 39.130 27.80 0.00 33.57 2.57
883 897 4.095932 TCTCTTCATGCTTGCATGTCAATC 59.904 41.667 27.80 0.00 33.57 2.67
885 899 2.730382 TCATGCTTGCATGTCAATCCT 58.270 42.857 27.80 0.00 33.57 3.24
886 900 3.093814 TCATGCTTGCATGTCAATCCTT 58.906 40.909 27.80 0.00 33.57 3.36
888 902 4.891168 TCATGCTTGCATGTCAATCCTTAT 59.109 37.500 27.80 0.00 33.57 1.73
889 903 5.361571 TCATGCTTGCATGTCAATCCTTATT 59.638 36.000 27.80 0.00 33.57 1.40
890 904 5.664294 TGCTTGCATGTCAATCCTTATTT 57.336 34.783 1.14 0.00 33.57 1.40
891 905 5.412640 TGCTTGCATGTCAATCCTTATTTG 58.587 37.500 1.14 0.00 33.57 2.32
892 906 4.269363 GCTTGCATGTCAATCCTTATTTGC 59.731 41.667 1.14 0.00 33.57 3.68
893 907 5.657474 CTTGCATGTCAATCCTTATTTGCT 58.343 37.500 0.00 0.00 33.57 3.91
894 908 6.681120 GCTTGCATGTCAATCCTTATTTGCTA 60.681 38.462 1.14 0.00 33.57 3.49
895 909 6.135290 TGCATGTCAATCCTTATTTGCTAC 57.865 37.500 0.00 0.00 30.03 3.58
896 910 5.651576 TGCATGTCAATCCTTATTTGCTACA 59.348 36.000 0.00 0.00 30.03 2.74
897 911 5.973565 GCATGTCAATCCTTATTTGCTACAC 59.026 40.000 0.00 0.00 0.00 2.90
898 912 6.404623 GCATGTCAATCCTTATTTGCTACACA 60.405 38.462 0.00 0.00 0.00 3.72
899 913 7.537715 CATGTCAATCCTTATTTGCTACACAA 58.462 34.615 0.00 0.00 36.13 3.33
900 914 7.144722 TGTCAATCCTTATTTGCTACACAAG 57.855 36.000 0.00 0.00 40.06 3.16
901 915 6.939730 TGTCAATCCTTATTTGCTACACAAGA 59.060 34.615 0.00 0.00 40.06 3.02
902 916 7.119699 TGTCAATCCTTATTTGCTACACAAGAG 59.880 37.037 0.00 0.00 40.06 2.85
903 917 6.094048 TCAATCCTTATTTGCTACACAAGAGC 59.906 38.462 0.00 0.00 40.06 4.09
904 918 5.165961 TCCTTATTTGCTACACAAGAGCT 57.834 39.130 0.00 0.00 40.06 4.09
905 919 4.937620 TCCTTATTTGCTACACAAGAGCTG 59.062 41.667 0.00 0.00 40.06 4.24
906 920 4.697352 CCTTATTTGCTACACAAGAGCTGT 59.303 41.667 0.00 0.00 40.06 4.40
928 960 9.025020 GCTGTGCTATATATGATACACATACAC 57.975 37.037 10.44 0.00 43.12 2.90
963 995 6.992063 CATACTTGCAAGTAGTGGAATTCT 57.008 37.500 35.23 18.42 44.06 2.40
968 1000 5.489792 TGCAAGTAGTGGAATTCTTCTCT 57.510 39.130 5.23 0.00 0.00 3.10
970 1002 5.247110 TGCAAGTAGTGGAATTCTTCTCTCT 59.753 40.000 5.23 0.00 0.00 3.10
971 1003 6.169800 GCAAGTAGTGGAATTCTTCTCTCTT 58.830 40.000 5.23 9.16 0.00 2.85
972 1004 6.091986 GCAAGTAGTGGAATTCTTCTCTCTTG 59.908 42.308 22.77 22.77 32.11 3.02
989 1024 9.529823 TTCTCTCTTGATACTTTTAGAGGTGTA 57.470 33.333 0.00 0.00 35.84 2.90
1049 1084 1.076632 TCCTCGGCTTCTCCTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
1050 1085 2.485795 CCTCGGCTTCTCCTCCTCG 61.486 68.421 0.00 0.00 0.00 4.63
1051 1086 1.751162 CTCGGCTTCTCCTCCTCGT 60.751 63.158 0.00 0.00 0.00 4.18
1070 1105 4.436998 GTCGCCGGTGACTCCCAG 62.437 72.222 35.30 2.74 35.95 4.45
1125 1166 3.827898 CTCCTCGCCCTCCACGAC 61.828 72.222 0.00 0.00 35.35 4.34
1137 1178 2.356913 CACGACGACATGCCACCA 60.357 61.111 0.00 0.00 0.00 4.17
1141 1182 2.357034 ACGACATGCCACCACGAC 60.357 61.111 0.00 0.00 0.00 4.34
1143 1184 2.031919 GACATGCCACCACGACCA 59.968 61.111 0.00 0.00 0.00 4.02
1158 1199 3.339042 CCAGGAGGTGCCCATGAT 58.661 61.111 0.00 0.00 37.37 2.45
1197 1238 2.159014 AGTGTCGACGCTCTCTCTCTAT 60.159 50.000 25.45 0.00 29.29 1.98
1199 1240 1.529438 GTCGACGCTCTCTCTCTATGG 59.471 57.143 0.00 0.00 0.00 2.74
1201 1242 0.596082 GACGCTCTCTCTCTATGGCC 59.404 60.000 0.00 0.00 0.00 5.36
1226 1267 2.019948 GGTGGTGGACCGTCTTATTC 57.980 55.000 0.00 0.00 39.43 1.75
1227 1268 1.636988 GTGGTGGACCGTCTTATTCG 58.363 55.000 0.00 0.00 39.43 3.34
1228 1269 0.108520 TGGTGGACCGTCTTATTCGC 60.109 55.000 0.00 0.00 39.43 4.70
1229 1270 0.175073 GGTGGACCGTCTTATTCGCT 59.825 55.000 0.00 0.00 0.00 4.93
1230 1271 1.278238 GTGGACCGTCTTATTCGCTG 58.722 55.000 0.00 0.00 0.00 5.18
1231 1272 0.174845 TGGACCGTCTTATTCGCTGG 59.825 55.000 0.00 0.00 0.00 4.85
1232 1273 1.152383 GGACCGTCTTATTCGCTGGC 61.152 60.000 0.00 0.00 0.00 4.85
1233 1274 1.152383 GACCGTCTTATTCGCTGGCC 61.152 60.000 0.00 0.00 0.00 5.36
1234 1275 2.237751 CCGTCTTATTCGCTGGCCG 61.238 63.158 0.00 0.00 38.61 6.13
1235 1276 2.237751 CGTCTTATTCGCTGGCCGG 61.238 63.158 7.41 7.41 37.59 6.13
1264 1305 0.179059 TGAGCTGCAACCTTTCACGA 60.179 50.000 1.02 0.00 0.00 4.35
1272 1313 2.745884 CCTTTCACGATGGCGCCA 60.746 61.111 34.80 34.80 42.48 5.69
1357 1398 2.815647 CCGCGAAGGAACTGCTCC 60.816 66.667 8.23 0.00 45.00 4.70
1374 1415 1.302033 CCGTGAGTTCTGCAGCCTT 60.302 57.895 9.47 0.00 0.00 4.35
1380 1421 0.251077 AGTTCTGCAGCCTTGAAGGG 60.251 55.000 13.99 0.00 35.37 3.95
1403 1444 3.195002 CATGAACGGCGGCGTGAT 61.195 61.111 38.07 27.63 0.00 3.06
1412 1453 2.536673 GCGGCGTGATGATGATGCA 61.537 57.895 9.37 0.00 0.00 3.96
1434 1475 2.582498 CCGAAGCGGGATGACGAC 60.582 66.667 0.00 0.00 44.15 4.34
1461 1502 2.847234 TCCTCACCGGCTTGTGGT 60.847 61.111 0.00 0.00 41.47 4.16
1485 1526 2.349755 GGCGCCAACCCTTCTGTA 59.650 61.111 24.80 0.00 0.00 2.74
1530 1571 1.383248 GAGGAGGAAGGCCAGGCTA 60.383 63.158 12.43 0.00 36.29 3.93
1540 1581 1.153086 GCCAGGCTACTGTCCATGG 60.153 63.158 4.97 4.97 43.36 3.66
1558 1599 4.383118 CCATGGTTGAAGAGGTAGGTACAG 60.383 50.000 2.57 0.00 0.00 2.74
1559 1600 2.565834 TGGTTGAAGAGGTAGGTACAGC 59.434 50.000 0.00 0.00 0.00 4.40
1571 1612 0.392595 GGTACAGCCACAAGCCTACC 60.393 60.000 0.00 0.00 45.47 3.18
1577 1618 0.811281 GCCACAAGCCTACCATTGTC 59.189 55.000 0.00 0.00 37.54 3.18
1607 1648 8.844244 GTTGCTACTAGTTAGTTACTGCCTATA 58.156 37.037 0.00 0.00 37.73 1.31
1608 1649 9.584008 TTGCTACTAGTTAGTTACTGCCTATAT 57.416 33.333 0.00 0.00 37.73 0.86
1613 1654 9.434420 ACTAGTTAGTTACTGCCTATATACTCG 57.566 37.037 0.00 0.00 37.73 4.18
1614 1655 9.434420 CTAGTTAGTTACTGCCTATATACTCGT 57.566 37.037 0.00 0.00 37.73 4.18
1615 1656 8.321650 AGTTAGTTACTGCCTATATACTCGTC 57.678 38.462 0.00 0.00 35.19 4.20
1616 1657 8.156165 AGTTAGTTACTGCCTATATACTCGTCT 58.844 37.037 0.00 0.00 35.19 4.18
1617 1658 8.442384 GTTAGTTACTGCCTATATACTCGTCTC 58.558 40.741 0.00 0.00 0.00 3.36
1618 1659 5.638657 AGTTACTGCCTATATACTCGTCTCG 59.361 44.000 0.00 0.00 0.00 4.04
1619 1660 4.268797 ACTGCCTATATACTCGTCTCGA 57.731 45.455 0.00 0.00 0.00 4.04
1620 1661 4.834534 ACTGCCTATATACTCGTCTCGAT 58.165 43.478 0.00 0.00 34.61 3.59
1621 1662 5.247084 ACTGCCTATATACTCGTCTCGATT 58.753 41.667 0.00 0.00 34.61 3.34
1650 1691 8.786898 TCTTATGATTAATTTACAGAGCCATGC 58.213 33.333 0.00 0.00 0.00 4.06
1665 1707 0.392336 CATGCCTAGCTCTCACCCTC 59.608 60.000 0.00 0.00 0.00 4.30
1684 1727 3.378112 CCTCACTTGCAACTTTTGAGTCA 59.622 43.478 15.99 0.00 33.26 3.41
1701 1744 8.506168 TTTGAGTCAGTTATTTTCTTGTGAGT 57.494 30.769 0.00 0.00 0.00 3.41
1716 1759 6.880484 TCTTGTGAGTACTTACTTTGGTGAA 58.120 36.000 17.65 2.55 36.50 3.18
1724 1767 6.766467 AGTACTTACTTTGGTGAAGTTTCCTG 59.234 38.462 0.00 0.00 46.34 3.86
1757 1801 5.984926 CCAATAAATATGTCCACATTGGCAC 59.015 40.000 0.00 0.00 36.90 5.01
1761 1805 1.250328 ATGTCCACATTGGCACACAG 58.750 50.000 0.00 0.00 39.29 3.66
1782 1832 5.043248 CAGTGCATACGTGATTGATACAGA 58.957 41.667 0.00 0.00 0.00 3.41
1789 1839 7.330454 GCATACGTGATTGATACAGATTCTGAT 59.670 37.037 20.33 9.11 35.18 2.90
1802 1852 6.511416 ACAGATTCTGATGTTTCTATCCTCG 58.489 40.000 20.33 0.00 35.18 4.63
1811 1861 8.354711 TGATGTTTCTATCCTCGCTCTTATAT 57.645 34.615 0.00 0.00 0.00 0.86
1812 1862 9.462606 TGATGTTTCTATCCTCGCTCTTATATA 57.537 33.333 0.00 0.00 0.00 0.86
1857 1919 6.572519 TCTCTGCAATTAACAAAGCAACTTT 58.427 32.000 0.00 0.00 36.44 2.66
1928 1992 0.961019 TTTTTGCCGAGCTGCATCTT 59.039 45.000 1.02 0.00 41.70 2.40
1932 1996 0.890542 TGCCGAGCTGCATCTTGTTT 60.891 50.000 1.02 0.00 36.04 2.83
1934 1998 1.336240 GCCGAGCTGCATCTTGTTTTT 60.336 47.619 1.02 0.00 0.00 1.94
1992 2060 5.734855 GTGTCACCCACATGATTATACAC 57.265 43.478 0.00 3.13 43.92 2.90
1996 2064 7.715249 GTGTCACCCACATGATTATACACTTAT 59.285 37.037 0.00 0.00 43.92 1.73
1998 2066 8.774586 GTCACCCACATGATTATACACTTATTC 58.225 37.037 0.00 0.00 0.00 1.75
2025 2093 5.124457 GTGTACATGCCTGAAATCAAGATGT 59.876 40.000 0.00 0.00 0.00 3.06
2031 2099 6.349243 TGCCTGAAATCAAGATGTCATTTT 57.651 33.333 3.52 0.00 34.74 1.82
2034 2102 6.647895 GCCTGAAATCAAGATGTCATTTTTGT 59.352 34.615 3.52 0.00 34.74 2.83
2035 2103 7.359765 GCCTGAAATCAAGATGTCATTTTTGTG 60.360 37.037 3.52 0.00 34.74 3.33
2037 2105 7.499292 TGAAATCAAGATGTCATTTTTGTGGT 58.501 30.769 0.00 0.22 30.42 4.16
2038 2106 8.637099 TGAAATCAAGATGTCATTTTTGTGGTA 58.363 29.630 0.00 0.00 30.42 3.25
2039 2107 9.474920 GAAATCAAGATGTCATTTTTGTGGTAA 57.525 29.630 9.51 0.00 0.00 2.85
2040 2108 9.480053 AAATCAAGATGTCATTTTTGTGGTAAG 57.520 29.630 9.51 0.00 0.00 2.34
2322 2390 6.400515 GCAGATACGAACTTTGAAGAAGTCAG 60.401 42.308 0.00 0.00 37.61 3.51
2343 2411 3.092511 GGGAGAGCAGGGATGCCA 61.093 66.667 5.86 0.00 34.90 4.92
2435 2503 2.548295 GCGACAAAGGGCGTTCCAA 61.548 57.895 0.00 0.00 38.24 3.53
2444 2512 0.102300 GGGCGTTCCAACAATATGGC 59.898 55.000 0.00 0.00 40.46 4.40
2531 2599 2.262915 CTCCGCTCGTGGCTCTTT 59.737 61.111 0.00 0.00 39.13 2.52
2577 2645 4.935205 TGTGTTCCAAACAATCTATCTCCG 59.065 41.667 0.00 0.00 44.16 4.63
2612 2681 8.948631 TCAAACTATCTCATGTCCAAATAGTC 57.051 34.615 0.00 0.00 33.24 2.59
2621 2690 9.593565 TCTCATGTCCAAATAGTCACTCTATAT 57.406 33.333 0.00 0.00 38.29 0.86
2652 2721 1.620822 GGAAGTTGTGCCACCATCTT 58.379 50.000 0.00 0.00 0.00 2.40
2656 2725 2.783135 AGTTGTGCCACCATCTTACTG 58.217 47.619 0.00 0.00 0.00 2.74
2666 2735 4.010349 CACCATCTTACTGAAGTTTCCCC 58.990 47.826 0.00 0.00 34.03 4.81
2669 2738 4.506625 CCATCTTACTGAAGTTTCCCCACA 60.507 45.833 0.00 0.00 34.03 4.17
2694 2763 2.084546 AGAGTGCAATTTTAGGCGACC 58.915 47.619 0.00 0.00 0.00 4.79
2695 2764 1.810151 GAGTGCAATTTTAGGCGACCA 59.190 47.619 0.00 0.00 0.00 4.02
2696 2765 2.227865 GAGTGCAATTTTAGGCGACCAA 59.772 45.455 0.00 0.00 0.00 3.67
2697 2766 2.228822 AGTGCAATTTTAGGCGACCAAG 59.771 45.455 0.00 0.00 0.00 3.61
2698 2767 1.543802 TGCAATTTTAGGCGACCAAGG 59.456 47.619 0.00 0.00 0.00 3.61
2708 2778 4.049546 AGGCGACCAAGGTTTTAAAAAC 57.950 40.909 7.96 7.96 0.00 2.43
2711 2781 4.174762 GCGACCAAGGTTTTAAAAACACA 58.825 39.130 17.91 0.00 0.00 3.72
2714 2784 6.347483 GCGACCAAGGTTTTAAAAACACAAAA 60.347 34.615 17.91 0.00 0.00 2.44
2715 2785 7.230914 CGACCAAGGTTTTAAAAACACAAAAG 58.769 34.615 17.91 3.43 0.00 2.27
2716 2786 7.116519 CGACCAAGGTTTTAAAAACACAAAAGA 59.883 33.333 17.91 0.00 0.00 2.52
2717 2787 8.090250 ACCAAGGTTTTAAAAACACAAAAGAC 57.910 30.769 17.91 0.00 0.00 3.01
2718 2788 7.934665 ACCAAGGTTTTAAAAACACAAAAGACT 59.065 29.630 17.91 0.00 0.00 3.24
2719 2789 9.425577 CCAAGGTTTTAAAAACACAAAAGACTA 57.574 29.630 17.91 0.00 0.00 2.59
2832 2902 4.143115 CGAATGACGTAGACAAGCACATTT 60.143 41.667 0.00 0.00 35.03 2.32
2867 2937 3.087370 GGGTTATCAAGAAGCCAGGTT 57.913 47.619 0.93 0.00 44.76 3.50
2868 2938 3.017442 GGGTTATCAAGAAGCCAGGTTC 58.983 50.000 1.33 1.33 44.76 3.62
2887 2957 5.088739 GGTTCGTTATTCAAACATGAGCAG 58.911 41.667 0.00 0.00 0.00 4.24
2890 2960 4.093514 CGTTATTCAAACATGAGCAGCAG 58.906 43.478 0.00 0.00 0.00 4.24
2892 2962 5.448225 CGTTATTCAAACATGAGCAGCAGAT 60.448 40.000 0.00 0.00 0.00 2.90
2943 3016 8.692110 TTTTTCTGTGAATATGAATGCATGAC 57.308 30.769 0.00 0.00 35.94 3.06
2948 3021 9.122779 TCTGTGAATATGAATGCATGACAATTA 57.877 29.630 0.00 0.00 35.94 1.40
3046 3119 6.070309 GGAAGCCCATGATAGAGAAGATGTAT 60.070 42.308 0.00 0.00 0.00 2.29
3074 3147 4.000988 AGAAACCATACAACATGACGACC 58.999 43.478 0.00 0.00 0.00 4.79
3075 3148 3.410631 AACCATACAACATGACGACCA 57.589 42.857 0.00 0.00 0.00 4.02
3076 3149 2.695359 ACCATACAACATGACGACCAC 58.305 47.619 0.00 0.00 0.00 4.16
3079 3152 0.675083 TACAACATGACGACCACGGT 59.325 50.000 0.00 0.00 44.46 4.83
3080 3153 0.878523 ACAACATGACGACCACGGTG 60.879 55.000 0.00 0.00 44.46 4.94
3097 3170 1.915266 TGCTAGCAGTGGCAGAGGT 60.915 57.895 14.93 0.00 44.61 3.85
3118 3191 4.161295 CCTGCTCCCGCGGATCAA 62.161 66.667 30.73 8.67 45.62 2.57
3124 3197 0.744414 CTCCCGCGGATCAACACAAT 60.744 55.000 30.73 0.00 0.00 2.71
3145 3218 0.467844 ACAACTTGGCAGCATGGACA 60.468 50.000 0.00 0.00 35.86 4.02
3161 3234 1.932511 GGACAACGGTTACGACAACAA 59.067 47.619 0.00 0.00 44.60 2.83
3162 3235 2.285776 GGACAACGGTTACGACAACAAC 60.286 50.000 0.00 0.00 44.60 3.32
3167 3240 2.798283 ACGGTTACGACAACAACAGATG 59.202 45.455 0.00 0.00 44.60 2.90
3182 3255 1.741706 CAGATGAAAGTTGCCATCGCT 59.258 47.619 10.88 0.00 42.81 4.93
3188 3261 1.533625 AAGTTGCCATCGCTTTAGCA 58.466 45.000 2.29 0.00 42.21 3.49
3205 3278 1.159713 GCAGCAAAAACAACCCTGGC 61.160 55.000 0.00 0.00 0.00 4.85
3209 3282 0.593773 CAAAAACAACCCTGGCGACG 60.594 55.000 0.00 0.00 0.00 5.12
3227 3300 1.414061 CGGCTTCATCCCATCCTCCT 61.414 60.000 0.00 0.00 0.00 3.69
3229 3302 1.216427 GGCTTCATCCCATCCTCCTTT 59.784 52.381 0.00 0.00 0.00 3.11
3239 3312 0.400213 ATCCTCCTTTGTTGCCGACA 59.600 50.000 0.00 0.00 36.19 4.35
3263 3336 4.521146 CAGACAATTTCTCCATGGCTACT 58.479 43.478 6.96 0.00 29.33 2.57
3269 3342 3.895232 TTCTCCATGGCTACTCAAGTC 57.105 47.619 6.96 0.00 0.00 3.01
3273 3346 1.065926 CCATGGCTACTCAAGTCTGCA 60.066 52.381 0.00 0.00 32.04 4.41
3275 3348 0.038251 TGGCTACTCAAGTCTGCACG 60.038 55.000 9.30 0.00 32.04 5.34
3281 3354 1.073964 CTCAAGTCTGCACGGTGATG 58.926 55.000 13.29 3.38 0.00 3.07
3292 3365 4.722700 GGTGATGGCGGCAGTGGT 62.723 66.667 19.29 0.00 0.00 4.16
3322 3395 1.351017 CTTACCTTGGGACTCCAGCAA 59.649 52.381 0.00 0.00 45.04 3.91
3354 3427 1.835483 GCATCACCGGCGATGATCAC 61.835 60.000 31.68 13.23 44.67 3.06
3414 3487 4.202182 GGAAGACATGGTGCTACCGTATAA 60.202 45.833 0.00 0.00 42.58 0.98
3482 3555 6.267928 GGAGCCTAGGAGACAAGAACATAATA 59.732 42.308 14.75 0.00 0.00 0.98
3497 3570 7.450903 AGAACATAATATAGTGCTACAACCCC 58.549 38.462 0.00 0.00 0.00 4.95
3507 3580 2.047830 GCTACAACCCCTATAGGTGCT 58.952 52.381 17.72 0.00 40.05 4.40
3511 3584 1.343465 CAACCCCTATAGGTGCTACCG 59.657 57.143 17.72 0.17 44.90 4.02
3622 3695 7.554835 TGACCACTATTTATTTATTTCGTGCCT 59.445 33.333 0.00 0.00 0.00 4.75
3646 3737 9.760077 CCTGAAAACTTGTAGTAAGAACTAAGA 57.240 33.333 0.00 0.00 39.90 2.10
3676 3767 7.046033 AGGTCTCAACGTAAAAATACCTATGG 58.954 38.462 5.68 0.00 34.40 2.74
3677 3768 6.820152 GGTCTCAACGTAAAAATACCTATGGT 59.180 38.462 0.00 0.00 40.16 3.55
3678 3769 7.981225 GGTCTCAACGTAAAAATACCTATGGTA 59.019 37.037 0.00 0.00 42.80 3.25
3695 3786 3.505386 TGGTAAAATGTGGTTGGATGCT 58.495 40.909 0.00 0.00 0.00 3.79
3698 3789 4.461081 GGTAAAATGTGGTTGGATGCTACA 59.539 41.667 0.88 0.00 0.00 2.74
3701 3792 3.650281 ATGTGGTTGGATGCTACATCA 57.350 42.857 9.60 0.17 33.73 3.07
3704 3795 3.244875 TGTGGTTGGATGCTACATCAACT 60.245 43.478 9.60 0.00 39.33 3.16
3781 3875 9.688592 ACTGCTAAAAATTCTTCTCAAAATCTG 57.311 29.630 0.00 0.00 0.00 2.90
3801 3895 4.943705 TCTGGTGGAGCATTAATTTGAGAC 59.056 41.667 0.00 0.00 0.00 3.36
3804 3898 4.142381 GGTGGAGCATTAATTTGAGACCAC 60.142 45.833 0.00 0.00 42.73 4.16
4023 4117 5.883673 TGGTATTAGCTTAGCGTTGGAAATT 59.116 36.000 0.00 0.00 0.00 1.82
4043 4137 7.773690 GGAAATTAATTAGGTGAGCTTCCACTA 59.226 37.037 0.01 0.00 37.24 2.74
4268 4362 3.903714 CTCCCCCTGGTTTTCTTCATTTT 59.096 43.478 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.456073 TCTAGACTACCTCCCAAGCC 57.544 55.000 0.00 0.00 0.00 4.35
45 46 4.487948 CGATGCAGACCACAATTTTCATT 58.512 39.130 0.00 0.00 0.00 2.57
49 50 1.067635 GCCGATGCAGACCACAATTTT 60.068 47.619 0.00 0.00 37.47 1.82
51 52 1.647545 CGCCGATGCAGACCACAATT 61.648 55.000 0.00 0.00 37.32 2.32
76 77 2.821969 GCACACAATCCACCATCTTCTT 59.178 45.455 0.00 0.00 0.00 2.52
126 127 1.505477 GACGTCGGAGGAGGATACCG 61.505 65.000 0.00 0.00 46.71 4.02
130 131 1.212441 ACTAAGACGTCGGAGGAGGAT 59.788 52.381 19.69 0.81 0.00 3.24
158 159 2.095212 TCGAACTTCAGATCTGACACCG 60.095 50.000 25.07 22.35 39.66 4.94
163 164 2.480244 CGCCATCGAACTTCAGATCTGA 60.480 50.000 21.67 21.67 38.10 3.27
192 193 1.779061 AATCAGACCGGGGCAACACT 61.779 55.000 6.32 0.00 38.54 3.55
212 213 4.094830 AGGAAAACCATACCGTTGAACT 57.905 40.909 0.00 0.00 0.00 3.01
290 295 2.526873 ACCTCCACACCCGAGCTT 60.527 61.111 0.00 0.00 0.00 3.74
320 325 0.752054 CAGCAGCCACCAAAGGAAAA 59.248 50.000 0.00 0.00 0.00 2.29
371 378 1.143684 AGAAACCTCTGAGCTTGGCAA 59.856 47.619 0.00 0.00 0.00 4.52
374 381 2.072298 CGAAGAAACCTCTGAGCTTGG 58.928 52.381 0.00 0.00 30.03 3.61
402 409 6.512297 CACCAGCCAAAAAGTAAAACTACAT 58.488 36.000 0.00 0.00 0.00 2.29
448 456 9.801873 TGGCAAAACTAAATAAATAGCAGAATC 57.198 29.630 0.00 0.00 0.00 2.52
464 472 0.621609 ATACCGGCCTGGCAAAACTA 59.378 50.000 22.05 2.27 43.94 2.24
477 485 8.506437 TCAAAGTATAAGTCACGTATATACCGG 58.494 37.037 0.00 0.00 34.51 5.28
541 549 3.388350 AGGGCCCGTTGTATTTTGAAAAA 59.612 39.130 18.44 0.00 0.00 1.94
542 550 2.966516 AGGGCCCGTTGTATTTTGAAAA 59.033 40.909 18.44 0.00 0.00 2.29
543 551 2.297597 CAGGGCCCGTTGTATTTTGAAA 59.702 45.455 18.44 0.00 0.00 2.69
544 552 1.889829 CAGGGCCCGTTGTATTTTGAA 59.110 47.619 18.44 0.00 0.00 2.69
545 553 1.540267 CAGGGCCCGTTGTATTTTGA 58.460 50.000 18.44 0.00 0.00 2.69
546 554 0.108851 GCAGGGCCCGTTGTATTTTG 60.109 55.000 18.44 6.85 0.00 2.44
547 555 0.540830 TGCAGGGCCCGTTGTATTTT 60.541 50.000 18.44 0.00 0.00 1.82
548 556 0.324275 ATGCAGGGCCCGTTGTATTT 60.324 50.000 18.44 0.00 0.00 1.40
549 557 0.548989 TATGCAGGGCCCGTTGTATT 59.451 50.000 18.44 1.22 0.00 1.89
550 558 0.771127 ATATGCAGGGCCCGTTGTAT 59.229 50.000 18.44 17.58 0.00 2.29
551 559 0.107831 GATATGCAGGGCCCGTTGTA 59.892 55.000 18.44 10.62 0.00 2.41
552 560 1.152963 GATATGCAGGGCCCGTTGT 60.153 57.895 18.44 7.10 0.00 3.32
553 561 2.253758 CGATATGCAGGGCCCGTTG 61.254 63.158 18.44 11.99 0.00 4.10
554 562 2.111043 CGATATGCAGGGCCCGTT 59.889 61.111 18.44 4.99 0.00 4.44
555 563 2.842462 TCGATATGCAGGGCCCGT 60.842 61.111 18.44 6.70 0.00 5.28
556 564 2.357517 GTCGATATGCAGGGCCCG 60.358 66.667 18.44 13.02 0.00 6.13
557 565 2.032681 GGTCGATATGCAGGGCCC 59.967 66.667 16.46 16.46 0.00 5.80
558 566 1.302033 CTGGTCGATATGCAGGGCC 60.302 63.158 0.00 0.00 0.00 5.80
559 567 0.320247 CTCTGGTCGATATGCAGGGC 60.320 60.000 0.00 0.00 0.00 5.19
560 568 1.271934 CTCTCTGGTCGATATGCAGGG 59.728 57.143 0.00 0.00 0.00 4.45
561 569 2.228582 CTCTCTCTGGTCGATATGCAGG 59.771 54.545 0.00 0.00 0.00 4.85
562 570 2.351641 GCTCTCTCTGGTCGATATGCAG 60.352 54.545 0.00 0.00 0.00 4.41
563 571 1.611006 GCTCTCTCTGGTCGATATGCA 59.389 52.381 0.00 0.00 0.00 3.96
564 572 1.611006 TGCTCTCTCTGGTCGATATGC 59.389 52.381 0.00 0.00 0.00 3.14
565 573 5.125257 ACATATGCTCTCTCTGGTCGATATG 59.875 44.000 1.58 0.00 0.00 1.78
566 574 5.260424 ACATATGCTCTCTCTGGTCGATAT 58.740 41.667 1.58 0.00 0.00 1.63
567 575 4.657013 ACATATGCTCTCTCTGGTCGATA 58.343 43.478 1.58 0.00 0.00 2.92
568 576 3.495331 ACATATGCTCTCTCTGGTCGAT 58.505 45.455 1.58 0.00 0.00 3.59
569 577 2.937519 ACATATGCTCTCTCTGGTCGA 58.062 47.619 1.58 0.00 0.00 4.20
570 578 3.724508 AACATATGCTCTCTCTGGTCG 57.275 47.619 1.58 0.00 0.00 4.79
576 584 7.090173 GGATCTAGTCAAACATATGCTCTCTC 58.910 42.308 1.58 0.00 0.00 3.20
593 601 3.741860 CGTACGCCGGGATCTAGT 58.258 61.111 2.18 0.00 0.00 2.57
602 610 0.378257 TCTTAACTAGCCGTACGCCG 59.622 55.000 10.49 0.00 38.78 6.46
604 612 3.344904 TCATCTTAACTAGCCGTACGC 57.655 47.619 10.49 5.63 37.98 4.42
605 613 5.175126 CCATTTCATCTTAACTAGCCGTACG 59.825 44.000 8.69 8.69 0.00 3.67
615 623 9.668497 ACCTAACTACTTCCATTTCATCTTAAC 57.332 33.333 0.00 0.00 0.00 2.01
617 625 9.886132 GAACCTAACTACTTCCATTTCATCTTA 57.114 33.333 0.00 0.00 0.00 2.10
618 626 8.383175 TGAACCTAACTACTTCCATTTCATCTT 58.617 33.333 0.00 0.00 0.00 2.40
619 627 7.918076 TGAACCTAACTACTTCCATTTCATCT 58.082 34.615 0.00 0.00 0.00 2.90
620 628 8.738645 ATGAACCTAACTACTTCCATTTCATC 57.261 34.615 0.00 0.00 0.00 2.92
621 629 8.328758 TGATGAACCTAACTACTTCCATTTCAT 58.671 33.333 0.00 0.00 34.64 2.57
622 630 7.685481 TGATGAACCTAACTACTTCCATTTCA 58.315 34.615 0.00 0.00 0.00 2.69
623 631 8.561738 TTGATGAACCTAACTACTTCCATTTC 57.438 34.615 0.00 0.00 0.00 2.17
624 632 8.934023 TTTGATGAACCTAACTACTTCCATTT 57.066 30.769 0.00 0.00 0.00 2.32
626 634 7.607991 CACTTTGATGAACCTAACTACTTCCAT 59.392 37.037 0.00 0.00 0.00 3.41
627 635 6.934645 CACTTTGATGAACCTAACTACTTCCA 59.065 38.462 0.00 0.00 0.00 3.53
628 636 6.371825 CCACTTTGATGAACCTAACTACTTCC 59.628 42.308 0.00 0.00 0.00 3.46
629 637 6.128254 GCCACTTTGATGAACCTAACTACTTC 60.128 42.308 0.00 0.00 0.00 3.01
670 678 0.104855 TGTGTGTCAGTGTGAGAGGC 59.895 55.000 0.00 0.00 0.00 4.70
676 684 0.861185 CCGATGTGTGTGTCAGTGTG 59.139 55.000 0.00 0.00 0.00 3.82
677 685 0.464036 ACCGATGTGTGTGTCAGTGT 59.536 50.000 0.00 0.00 0.00 3.55
714 722 8.177663 GGAATAAGTTTGTATGGATATGCATCG 58.822 37.037 13.55 0.00 31.33 3.84
773 785 1.226746 ACACTTGCTCTTGCGTTACC 58.773 50.000 0.00 0.00 43.34 2.85
778 790 0.166814 GGCTTACACTTGCTCTTGCG 59.833 55.000 0.00 0.00 43.34 4.85
797 809 3.941483 GAGAGAGAGAGAGAGAGTTGGTG 59.059 52.174 0.00 0.00 0.00 4.17
799 811 4.163078 AGAGAGAGAGAGAGAGAGAGTTGG 59.837 50.000 0.00 0.00 0.00 3.77
800 812 5.128499 AGAGAGAGAGAGAGAGAGAGAGTTG 59.872 48.000 0.00 0.00 0.00 3.16
802 814 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
820 834 3.309296 GGGAGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
821 835 2.370189 GGGGAGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
822 836 2.022035 AGGGGAGAGAGAGAGAGAGAGA 60.022 54.545 0.00 0.00 0.00 3.10
823 837 2.412591 AGGGGAGAGAGAGAGAGAGAG 58.587 57.143 0.00 0.00 0.00 3.20
824 838 2.587060 AGGGGAGAGAGAGAGAGAGA 57.413 55.000 0.00 0.00 0.00 3.10
825 839 3.496870 GCTAAGGGGAGAGAGAGAGAGAG 60.497 56.522 0.00 0.00 0.00 3.20
826 840 2.441750 GCTAAGGGGAGAGAGAGAGAGA 59.558 54.545 0.00 0.00 0.00 3.10
827 841 2.443255 AGCTAAGGGGAGAGAGAGAGAG 59.557 54.545 0.00 0.00 0.00 3.20
828 842 2.498441 AGCTAAGGGGAGAGAGAGAGA 58.502 52.381 0.00 0.00 0.00 3.10
829 843 2.958355 CAAGCTAAGGGGAGAGAGAGAG 59.042 54.545 0.00 0.00 0.00 3.20
830 844 2.358721 CCAAGCTAAGGGGAGAGAGAGA 60.359 54.545 0.00 0.00 0.00 3.10
831 845 2.038659 CCAAGCTAAGGGGAGAGAGAG 58.961 57.143 0.00 0.00 0.00 3.20
832 846 1.646447 TCCAAGCTAAGGGGAGAGAGA 59.354 52.381 5.38 0.00 0.00 3.10
833 847 2.166907 TCCAAGCTAAGGGGAGAGAG 57.833 55.000 5.38 0.00 0.00 3.20
834 848 2.642171 TTCCAAGCTAAGGGGAGAGA 57.358 50.000 5.38 0.00 31.19 3.10
835 849 3.457749 AGAATTCCAAGCTAAGGGGAGAG 59.542 47.826 0.65 0.00 31.19 3.20
836 850 3.464828 AGAATTCCAAGCTAAGGGGAGA 58.535 45.455 0.65 0.00 31.19 3.71
837 851 3.941704 AGAATTCCAAGCTAAGGGGAG 57.058 47.619 0.65 0.00 31.19 4.30
838 852 4.236527 GAAGAATTCCAAGCTAAGGGGA 57.763 45.455 0.65 0.00 39.83 4.81
851 865 6.183360 ATGCAAGCATGAAGAGAGAAGAATTC 60.183 38.462 6.76 0.00 39.39 2.17
871 885 5.664294 AGCAAATAAGGATTGACATGCAA 57.336 34.783 0.00 5.27 41.53 4.08
880 894 6.094603 CAGCTCTTGTGTAGCAAATAAGGATT 59.905 38.462 0.00 0.00 42.62 3.01
882 896 4.937620 CAGCTCTTGTGTAGCAAATAAGGA 59.062 41.667 0.00 0.00 42.62 3.36
883 897 4.697352 ACAGCTCTTGTGTAGCAAATAAGG 59.303 41.667 0.00 0.00 42.62 2.69
896 910 8.031864 GTGTATCATATATAGCACAGCTCTTGT 58.968 37.037 0.00 0.00 40.44 3.16
897 911 8.031277 TGTGTATCATATATAGCACAGCTCTTG 58.969 37.037 0.00 0.00 40.44 3.02
898 912 8.127150 TGTGTATCATATATAGCACAGCTCTT 57.873 34.615 0.00 0.00 40.44 2.85
899 913 7.709149 TGTGTATCATATATAGCACAGCTCT 57.291 36.000 0.00 0.00 40.44 4.09
900 914 9.457110 GTATGTGTATCATATATAGCACAGCTC 57.543 37.037 12.82 6.05 40.54 4.09
901 915 8.971073 TGTATGTGTATCATATATAGCACAGCT 58.029 33.333 12.82 0.00 40.54 4.24
902 916 9.025020 GTGTATGTGTATCATATATAGCACAGC 57.975 37.037 12.82 10.00 40.54 4.40
939 971 7.888503 GAAGAATTCCACTACTTGCAAGTATGC 60.889 40.741 33.45 20.35 45.96 3.14
940 972 6.992063 AGAATTCCACTACTTGCAAGTATG 57.008 37.500 33.45 28.97 40.46 2.39
941 973 7.617041 GAAGAATTCCACTACTTGCAAGTAT 57.383 36.000 33.45 22.24 38.82 2.12
961 993 8.744652 CACCTCTAAAAGTATCAAGAGAGAAGA 58.255 37.037 0.00 0.00 38.16 2.87
962 994 8.527810 ACACCTCTAAAAGTATCAAGAGAGAAG 58.472 37.037 0.00 0.00 38.16 2.85
963 995 8.423906 ACACCTCTAAAAGTATCAAGAGAGAA 57.576 34.615 0.00 0.00 38.16 2.87
982 1017 7.042335 GCCATCATTGGTATATAGTACACCTC 58.958 42.308 0.00 0.00 45.57 3.85
998 1033 2.696187 TGTTCATGGGATGCCATCATTG 59.304 45.455 17.04 7.03 31.96 2.82
999 1034 2.696707 GTGTTCATGGGATGCCATCATT 59.303 45.455 17.04 0.00 31.96 2.57
1008 1043 0.039618 GGTGGTGGTGTTCATGGGAT 59.960 55.000 0.00 0.00 0.00 3.85
1019 1054 2.923035 CGAGGAGGTGGTGGTGGT 60.923 66.667 0.00 0.00 0.00 4.16
1111 1146 4.477975 GTCGTCGTGGAGGGCGAG 62.478 72.222 0.00 0.00 39.14 5.03
1125 1166 3.118454 GGTCGTGGTGGCATGTCG 61.118 66.667 0.00 0.00 0.00 4.35
1158 1199 2.535485 CTTGCGGTGGCCATGACCTA 62.535 60.000 9.72 0.00 38.85 3.08
1170 1211 4.280494 AGCGTCGACACTTGCGGT 62.280 61.111 17.16 2.77 0.00 5.68
1207 1248 1.738030 CGAATAAGACGGTCCACCACC 60.738 57.143 4.14 0.00 42.69 4.61
1208 1249 1.636988 CGAATAAGACGGTCCACCAC 58.363 55.000 4.14 0.00 35.14 4.16
1209 1250 0.108520 GCGAATAAGACGGTCCACCA 60.109 55.000 4.14 0.00 35.14 4.17
1210 1251 0.175073 AGCGAATAAGACGGTCCACC 59.825 55.000 4.14 0.00 36.82 4.61
1211 1252 1.278238 CAGCGAATAAGACGGTCCAC 58.722 55.000 4.14 0.00 39.38 4.02
1212 1253 0.174845 CCAGCGAATAAGACGGTCCA 59.825 55.000 4.14 0.00 39.38 4.02
1213 1254 1.152383 GCCAGCGAATAAGACGGTCC 61.152 60.000 4.14 0.00 39.38 4.46
1214 1255 1.152383 GGCCAGCGAATAAGACGGTC 61.152 60.000 0.00 0.00 39.38 4.79
1215 1256 1.153429 GGCCAGCGAATAAGACGGT 60.153 57.895 0.00 0.00 42.02 4.83
1216 1257 2.237751 CGGCCAGCGAATAAGACGG 61.238 63.158 2.24 0.00 0.00 4.79
1217 1258 2.237751 CCGGCCAGCGAATAAGACG 61.238 63.158 2.24 0.00 0.00 4.18
1218 1259 2.534903 GCCGGCCAGCGAATAAGAC 61.535 63.158 18.11 0.00 0.00 3.01
1219 1260 2.203015 GCCGGCCAGCGAATAAGA 60.203 61.111 18.11 0.00 0.00 2.10
1277 1318 3.015151 GCTGCTGCATGGACATCATCC 62.015 57.143 11.11 0.00 42.94 3.51
1346 1387 0.318762 GAACTCACGGAGCAGTTCCT 59.681 55.000 1.28 0.00 44.41 3.36
1350 1391 1.005630 GCAGAACTCACGGAGCAGT 60.006 57.895 1.36 0.00 32.04 4.40
1357 1398 0.601046 TCAAGGCTGCAGAACTCACG 60.601 55.000 20.43 7.15 0.00 4.35
1374 1415 0.394216 CGTTCATGGCATCCCCTTCA 60.394 55.000 0.00 0.00 0.00 3.02
1400 1441 1.139455 TCGGAGCTTGCATCATCATCA 59.861 47.619 0.00 0.00 0.00 3.07
1401 1442 1.875009 TCGGAGCTTGCATCATCATC 58.125 50.000 0.00 0.00 0.00 2.92
1402 1443 2.219458 CTTCGGAGCTTGCATCATCAT 58.781 47.619 0.00 0.00 0.00 2.45
1403 1444 1.660167 CTTCGGAGCTTGCATCATCA 58.340 50.000 0.00 0.00 0.00 3.07
1446 1487 2.358737 GGACCACAAGCCGGTGAG 60.359 66.667 1.90 0.00 41.32 3.51
1479 1520 5.692115 TGTAATCCATGGAGCTTACAGAA 57.308 39.130 26.56 12.30 30.68 3.02
1530 1571 2.057922 ACCTCTTCAACCATGGACAGT 58.942 47.619 21.47 0.97 0.00 3.55
1540 1581 2.565834 TGGCTGTACCTACCTCTTCAAC 59.434 50.000 0.00 0.00 40.22 3.18
1558 1599 0.811281 GACAATGGTAGGCTTGTGGC 59.189 55.000 0.00 0.00 35.80 5.01
1559 1600 1.004745 AGGACAATGGTAGGCTTGTGG 59.995 52.381 0.00 0.00 35.80 4.17
1571 1612 6.874134 ACTAACTAGTAGCAACAAGGACAATG 59.126 38.462 0.00 0.00 34.13 2.82
1577 1618 6.310711 GCAGTAACTAACTAGTAGCAACAAGG 59.689 42.308 0.00 0.00 35.76 3.61
1607 1648 7.674471 TCATAAGATCAATCGAGACGAGTAT 57.326 36.000 0.00 0.00 39.91 2.12
1608 1649 7.674471 ATCATAAGATCAATCGAGACGAGTA 57.326 36.000 0.00 0.00 39.91 2.59
1609 1650 6.567687 ATCATAAGATCAATCGAGACGAGT 57.432 37.500 0.00 0.00 39.91 4.18
1610 1651 8.956617 TTAATCATAAGATCAATCGAGACGAG 57.043 34.615 0.00 0.00 34.31 4.18
1650 1691 1.480137 CAAGTGAGGGTGAGAGCTAGG 59.520 57.143 0.00 0.00 0.00 3.02
1665 1707 4.361451 ACTGACTCAAAAGTTGCAAGTG 57.639 40.909 7.73 0.26 35.28 3.16
1724 1767 7.505585 TGTGGACATATTTATTGGATTCCTTCC 59.494 37.037 3.95 0.00 45.69 3.46
1735 1779 6.154192 TGTGTGCCAATGTGGACATATTTATT 59.846 34.615 0.00 0.00 40.96 1.40
1757 1801 4.566360 TGTATCAATCACGTATGCACTGTG 59.434 41.667 2.76 2.76 33.39 3.66
1761 1805 6.422100 AGAATCTGTATCAATCACGTATGCAC 59.578 38.462 0.00 0.00 0.00 4.57
1768 1812 7.474398 AACATCAGAATCTGTATCAATCACG 57.526 36.000 10.36 0.00 32.61 4.35
1774 1824 9.152327 AGGATAGAAACATCAGAATCTGTATCA 57.848 33.333 10.36 0.00 32.61 2.15
1782 1832 5.304101 AGAGCGAGGATAGAAACATCAGAAT 59.696 40.000 0.00 0.00 0.00 2.40
1811 1861 9.268282 AGAGATAGAGGGTGAAAAGTTGTAATA 57.732 33.333 0.00 0.00 0.00 0.98
1812 1862 8.043710 CAGAGATAGAGGGTGAAAAGTTGTAAT 58.956 37.037 0.00 0.00 0.00 1.89
1813 1863 7.386851 CAGAGATAGAGGGTGAAAAGTTGTAA 58.613 38.462 0.00 0.00 0.00 2.41
1826 1876 6.238593 GCTTTGTTAATTGCAGAGATAGAGGG 60.239 42.308 6.58 0.00 0.00 4.30
1830 1880 7.533426 AGTTGCTTTGTTAATTGCAGAGATAG 58.467 34.615 6.58 0.00 36.75 2.08
1832 1882 6.336842 AGTTGCTTTGTTAATTGCAGAGAT 57.663 33.333 6.58 0.00 36.75 2.75
1834 1884 6.833342 AAAGTTGCTTTGTTAATTGCAGAG 57.167 33.333 0.00 0.00 36.75 3.35
1835 1885 8.709386 TTAAAAGTTGCTTTGTTAATTGCAGA 57.291 26.923 0.00 0.00 36.75 4.26
1914 1978 0.242017 AAAACAAGATGCAGCTCGGC 59.758 50.000 4.22 0.00 0.00 5.54
1950 2018 5.437060 ACACAAGAAACAACAGGACTACAT 58.563 37.500 0.00 0.00 0.00 2.29
1958 2026 2.752354 TGGGTGACACAAGAAACAACAG 59.248 45.455 8.08 0.00 0.00 3.16
2006 2074 4.976224 TGACATCTTGATTTCAGGCATG 57.024 40.909 0.00 0.00 0.00 4.06
2012 2080 7.499292 ACCACAAAAATGACATCTTGATTTCA 58.501 30.769 14.17 2.50 0.00 2.69
2031 2099 8.369424 TGCTGTAGTTAGTAATTCTTACCACAA 58.631 33.333 0.00 0.00 36.81 3.33
2034 2102 8.809066 TCTTGCTGTAGTTAGTAATTCTTACCA 58.191 33.333 0.00 0.00 36.81 3.25
2035 2103 9.303537 CTCTTGCTGTAGTTAGTAATTCTTACC 57.696 37.037 0.00 0.00 36.81 2.85
2038 2106 8.808092 ACTCTCTTGCTGTAGTTAGTAATTCTT 58.192 33.333 0.00 0.00 0.00 2.52
2039 2107 8.356000 ACTCTCTTGCTGTAGTTAGTAATTCT 57.644 34.615 0.00 0.00 0.00 2.40
2045 2113 8.810990 AGTTATACTCTCTTGCTGTAGTTAGT 57.189 34.615 0.00 0.00 0.00 2.24
2049 2117 8.221944 AGGATAGTTATACTCTCTTGCTGTAGT 58.778 37.037 0.00 0.00 0.00 2.73
2292 2360 2.238646 TCAAAGTTCGTATCTGCCCCAT 59.761 45.455 0.00 0.00 0.00 4.00
2322 2390 2.367512 ATCCCTGCTCTCCCCCAC 60.368 66.667 0.00 0.00 0.00 4.61
2343 2411 1.241315 GGTGCTACCAACATGCCGTT 61.241 55.000 0.00 0.00 38.42 4.44
2420 2488 1.408969 ATTGTTGGAACGCCCTTTGT 58.591 45.000 0.00 0.00 35.38 2.83
2450 2518 3.570638 CAGCTCTCAATGGCGGCG 61.571 66.667 0.51 0.51 0.00 6.46
2531 2599 2.583441 CGGGTGGAGGAAGTGCTCA 61.583 63.158 2.09 0.00 0.00 4.26
2577 2645 8.261492 ACATGAGATAGTTTGATGTTGAAGAC 57.739 34.615 0.00 0.00 0.00 3.01
2621 2690 6.757947 GTGGCACAACTTCCGTATATAAGTTA 59.242 38.462 13.86 0.00 42.52 2.24
2630 2699 4.783667 GGTGGCACAACTTCCGTA 57.216 55.556 20.82 0.00 46.61 4.02
2652 2721 2.128535 TGGTGTGGGGAAACTTCAGTA 58.871 47.619 0.00 0.00 0.00 2.74
2656 2725 2.623416 CTCTTTGGTGTGGGGAAACTTC 59.377 50.000 0.00 0.00 0.00 3.01
2666 2735 4.984161 CCTAAAATTGCACTCTTTGGTGTG 59.016 41.667 0.00 0.00 39.21 3.82
2669 2738 3.305335 CGCCTAAAATTGCACTCTTTGGT 60.305 43.478 0.00 0.00 0.00 3.67
2742 2812 9.871175 TCAAGTACCTTCCCTTTTATACTTTTT 57.129 29.630 0.00 0.00 32.04 1.94
2747 2817 9.457436 TTTCATCAAGTACCTTCCCTTTTATAC 57.543 33.333 0.00 0.00 0.00 1.47
2783 2853 7.439655 GGATACCTGTTGATTCACATAGTTCTC 59.560 40.741 0.00 0.00 0.00 2.87
2798 2868 2.888594 ACGTCATTCGGATACCTGTTG 58.111 47.619 0.00 0.00 44.69 3.33
2846 2916 2.279173 ACCTGGCTTCTTGATAACCCT 58.721 47.619 0.00 0.00 0.00 4.34
2867 2937 3.750652 TGCTGCTCATGTTTGAATAACGA 59.249 39.130 0.00 0.00 0.00 3.85
2868 2938 4.082274 TGCTGCTCATGTTTGAATAACG 57.918 40.909 0.00 0.00 0.00 3.18
2922 2995 7.576861 ATTGTCATGCATTCATATTCACAGA 57.423 32.000 0.00 0.00 0.00 3.41
2923 2996 9.908152 ATAATTGTCATGCATTCATATTCACAG 57.092 29.630 0.00 0.00 0.00 3.66
3038 3111 7.112122 TGTATGGTTTCTTCTGCATACATCTT 58.888 34.615 0.00 0.00 32.65 2.40
3046 3119 5.048782 GTCATGTTGTATGGTTTCTTCTGCA 60.049 40.000 0.00 0.00 0.00 4.41
3074 3147 3.121030 GCCACTGCTAGCACCGTG 61.121 66.667 23.52 23.52 33.53 4.94
3075 3148 3.596066 CTGCCACTGCTAGCACCGT 62.596 63.158 14.93 8.73 38.71 4.83
3076 3149 2.816958 CTGCCACTGCTAGCACCG 60.817 66.667 14.93 7.98 38.71 4.94
3079 3152 1.915266 ACCTCTGCCACTGCTAGCA 60.915 57.895 18.22 18.22 38.71 3.49
3080 3153 1.449246 CACCTCTGCCACTGCTAGC 60.449 63.158 8.10 8.10 38.71 3.42
3110 3183 4.419522 AGTTGTTATTGTGTTGATCCGC 57.580 40.909 0.00 0.00 0.00 5.54
3118 3191 2.692557 TGCTGCCAAGTTGTTATTGTGT 59.307 40.909 1.45 0.00 0.00 3.72
3124 3197 1.885887 GTCCATGCTGCCAAGTTGTTA 59.114 47.619 1.45 0.00 0.00 2.41
3145 3218 2.891112 TCTGTTGTTGTCGTAACCGTT 58.109 42.857 3.56 0.00 35.01 4.44
3161 3234 1.470098 GCGATGGCAACTTTCATCTGT 59.530 47.619 0.00 0.00 38.02 3.41
3162 3235 1.741706 AGCGATGGCAACTTTCATCTG 59.258 47.619 1.50 0.00 43.41 2.90
3167 3240 2.095263 TGCTAAAGCGATGGCAACTTTC 60.095 45.455 14.36 5.30 45.83 2.62
3182 3255 3.431486 CCAGGGTTGTTTTTGCTGCTAAA 60.431 43.478 5.17 5.17 0.00 1.85
3188 3261 1.040339 TCGCCAGGGTTGTTTTTGCT 61.040 50.000 0.00 0.00 0.00 3.91
3192 3265 2.190841 CCGTCGCCAGGGTTGTTTT 61.191 57.895 0.00 0.00 0.00 2.43
3205 3278 1.595382 GGATGGGATGAAGCCGTCG 60.595 63.158 0.00 0.00 0.00 5.12
3209 3282 0.849417 AAGGAGGATGGGATGAAGCC 59.151 55.000 0.00 0.00 0.00 4.35
3239 3312 2.097825 GCCATGGAGAAATTGTCTGCT 58.902 47.619 18.40 0.00 44.75 4.24
3244 3317 4.574674 TGAGTAGCCATGGAGAAATTGT 57.425 40.909 18.40 0.00 0.00 2.71
3263 3336 0.320683 CCATCACCGTGCAGACTTGA 60.321 55.000 0.00 0.00 0.00 3.02
3275 3348 4.722700 ACCACTGCCGCCATCACC 62.723 66.667 0.00 0.00 0.00 4.02
3289 3362 1.070105 GGTAAGCGACACCACACCA 59.930 57.895 0.00 0.00 36.01 4.17
3292 3365 0.250124 CCAAGGTAAGCGACACCACA 60.250 55.000 7.10 0.00 38.62 4.17
3322 3395 0.030638 GTGATGCAAACGCCTGTTGT 59.969 50.000 0.00 0.00 38.62 3.32
3354 3427 3.165318 GCGGCGATTGTTGTTGCG 61.165 61.111 12.98 0.00 0.00 4.85
3414 3487 1.577736 CTCAGACCCCATGAGGTTCT 58.422 55.000 0.00 0.00 41.42 3.01
3482 3555 4.838986 CACCTATAGGGGTTGTAGCACTAT 59.161 45.833 22.91 6.00 43.89 2.12
3497 3570 5.125739 CCTAAGAATCCGGTAGCACCTATAG 59.874 48.000 0.00 0.00 35.66 1.31
3507 3580 2.169769 CAGGTTGCCTAAGAATCCGGTA 59.830 50.000 0.00 0.00 29.64 4.02
3511 3584 1.745653 GTGCAGGTTGCCTAAGAATCC 59.254 52.381 0.00 0.00 44.23 3.01
3646 3737 5.996669 ATTTTTACGTTGAGACCTCGTTT 57.003 34.783 0.00 0.00 38.69 3.60
3649 3740 5.166398 AGGTATTTTTACGTTGAGACCTCG 58.834 41.667 0.00 0.00 30.08 4.63
3676 3767 5.637006 TGTAGCATCCAACCACATTTTAC 57.363 39.130 0.00 0.00 0.00 2.01
3677 3768 5.948758 TGATGTAGCATCCAACCACATTTTA 59.051 36.000 6.65 0.00 30.25 1.52
3678 3769 4.771577 TGATGTAGCATCCAACCACATTTT 59.228 37.500 6.65 0.00 30.25 1.82
3695 3786 8.827177 AAGAACGACAATCTAAAGTTGATGTA 57.173 30.769 0.00 0.00 0.00 2.29
3698 3789 8.621286 ACAAAAGAACGACAATCTAAAGTTGAT 58.379 29.630 0.00 0.00 0.00 2.57
3701 3792 7.282450 AGGACAAAAGAACGACAATCTAAAGTT 59.718 33.333 0.00 0.00 0.00 2.66
3704 3795 8.842358 ATAGGACAAAAGAACGACAATCTAAA 57.158 30.769 0.00 0.00 0.00 1.85
3735 3826 3.137360 AGTCAAGAGAAGAAGCAAACCCT 59.863 43.478 0.00 0.00 0.00 4.34
3781 3875 4.016444 TGGTCTCAAATTAATGCTCCACC 58.984 43.478 0.00 0.00 0.00 4.61
3801 3895 9.650371 CAATATTTCGTGAAGTATGTTATGTGG 57.350 33.333 0.00 0.00 0.00 4.17
4023 4117 7.556275 CCAAATTAGTGGAAGCTCACCTAATTA 59.444 37.037 15.30 0.00 41.65 1.40
4043 4137 2.125431 GCATGCAGCGGCCAAATT 60.125 55.556 14.21 0.00 40.13 1.82
4268 4362 1.263356 CACGTACTGGAAGAAGGGGA 58.737 55.000 0.00 0.00 37.43 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.