Multiple sequence alignment - TraesCS4A01G469300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G469300 chr4A 100.000 7509 0 0 1 7509 731096105 731088597 0.000000e+00 13867.0
1 TraesCS4A01G469300 chr4A 87.251 2463 258 30 1727 4151 730620079 730622523 0.000000e+00 2758.0
2 TraesCS4A01G469300 chr4A 94.733 1386 54 8 5663 7038 729310415 729309039 0.000000e+00 2137.0
3 TraesCS4A01G469300 chr4A 93.483 1381 64 8 5663 7037 730622508 730623868 0.000000e+00 2028.0
4 TraesCS4A01G469300 chr4A 93.357 1385 55 13 5663 7037 730490695 730492052 0.000000e+00 2013.0
5 TraesCS4A01G469300 chr4A 92.790 1387 77 14 1730 3096 729314151 729312768 0.000000e+00 1986.0
6 TraesCS4A01G469300 chr4A 86.705 1760 168 26 1727 3451 730568063 730569791 0.000000e+00 1893.0
7 TraesCS4A01G469300 chr4A 95.463 1058 40 1 3094 4151 729311449 729310400 0.000000e+00 1681.0
8 TraesCS4A01G469300 chr4A 87.458 885 97 5 3270 4151 730489837 730490710 0.000000e+00 1007.0
9 TraesCS4A01G469300 chr4A 87.585 886 76 22 1727 2584 730488379 730489258 0.000000e+00 996.0
10 TraesCS4A01G469300 chr4A 93.490 384 14 1 6654 7037 730571008 730571380 1.830000e-155 560.0
11 TraesCS4A01G469300 chr4A 95.686 255 10 1 7254 7508 610328705 610328452 7.010000e-110 409.0
12 TraesCS4A01G469300 chr4A 84.712 399 39 13 7122 7506 655655875 655655485 5.500000e-101 379.0
13 TraesCS4A01G469300 chr4A 93.548 62 4 0 7119 7180 610329020 610328959 8.020000e-15 93.5
14 TraesCS4A01G469300 chr1B 94.243 1737 88 10 1 1733 375357391 375359119 0.000000e+00 2643.0
15 TraesCS4A01G469300 chr1B 100.000 84 0 0 7034 7117 335737225 335737142 1.010000e-33 156.0
16 TraesCS4A01G469300 chr5B 92.605 1447 105 2 4150 5595 243414649 243413204 0.000000e+00 2078.0
17 TraesCS4A01G469300 chr5B 90.612 1470 130 7 4151 5616 282019195 282017730 0.000000e+00 1943.0
18 TraesCS4A01G469300 chr5B 85.354 396 42 11 7119 7506 185538096 185537709 5.460000e-106 396.0
19 TraesCS4A01G469300 chr5B 78.176 307 51 14 1 297 509931283 509931583 1.660000e-41 182.0
20 TraesCS4A01G469300 chrUn 93.687 1378 50 13 5663 7030 340433617 340434967 0.000000e+00 2028.0
21 TraesCS4A01G469300 chrUn 86.637 1115 133 12 3041 4151 340432530 340433632 0.000000e+00 1219.0
22 TraesCS4A01G469300 chrUn 97.500 240 6 0 7119 7358 236190433 236190194 1.950000e-110 411.0
23 TraesCS4A01G469300 chrUn 84.848 297 24 14 7124 7408 314736702 314736415 5.740000e-71 279.0
24 TraesCS4A01G469300 chrUn 96.454 141 3 2 7354 7492 236186688 236186548 1.630000e-56 231.0
25 TraesCS4A01G469300 chr6D 91.020 1470 127 4 4151 5619 390166474 390167939 0.000000e+00 1978.0
26 TraesCS4A01G469300 chr6D 91.229 1448 121 4 4151 5593 469591851 469590405 0.000000e+00 1965.0
27 TraesCS4A01G469300 chr6D 84.855 449 38 7 402 820 398718906 398718458 6.960000e-115 425.0
28 TraesCS4A01G469300 chr5D 90.965 1472 125 7 4151 5620 486751572 486750107 0.000000e+00 1975.0
29 TraesCS4A01G469300 chr5D 90.693 1472 129 5 4151 5618 525599563 525598096 0.000000e+00 1953.0
30 TraesCS4A01G469300 chr7B 90.816 1470 126 7 4151 5618 746376193 746374731 0.000000e+00 1958.0
31 TraesCS4A01G469300 chr7B 97.698 391 9 0 7119 7509 750215507 750215117 0.000000e+00 673.0
32 TraesCS4A01G469300 chr7B 80.592 304 53 6 1 302 36686248 36686547 5.860000e-56 230.0
33 TraesCS4A01G469300 chr1A 90.816 1470 126 8 4152 5618 34977221 34975758 0.000000e+00 1958.0
34 TraesCS4A01G469300 chr1A 89.103 312 26 3 513 817 44356496 44356806 1.530000e-101 381.0
35 TraesCS4A01G469300 chr1A 88.199 322 28 8 513 826 43386432 43386113 7.110000e-100 375.0
36 TraesCS4A01G469300 chr1A 88.782 312 27 3 513 817 44326260 44326570 7.110000e-100 375.0
37 TraesCS4A01G469300 chr1A 90.094 212 18 3 301 510 44326015 44326225 9.600000e-69 272.0
38 TraesCS4A01G469300 chr1A 89.623 212 19 3 301 510 44294134 44294344 4.470000e-67 267.0
39 TraesCS4A01G469300 chr1A 89.623 212 19 3 301 510 44356251 44356461 4.470000e-67 267.0
40 TraesCS4A01G469300 chr1A 86.585 82 1 2 7037 7117 302196082 302196154 1.740000e-11 82.4
41 TraesCS4A01G469300 chr2B 90.674 1469 124 4 4151 5619 695690343 695691798 0.000000e+00 1941.0
42 TraesCS4A01G469300 chr2B 80.583 309 42 15 1 300 794148082 794147783 9.810000e-54 222.0
43 TraesCS4A01G469300 chr7A 96.774 372 12 0 7137 7508 42733698 42733327 8.280000e-174 621.0
44 TraesCS4A01G469300 chr1D 91.349 393 29 2 7119 7506 467388897 467388505 3.990000e-147 532.0
45 TraesCS4A01G469300 chr1D 85.823 395 42 9 7119 7506 19524937 19525324 2.520000e-109 407.0
46 TraesCS4A01G469300 chr1D 89.103 312 27 3 513 817 44166136 44166447 1.530000e-101 381.0
47 TraesCS4A01G469300 chr1D 91.509 212 15 3 301 510 44165889 44166099 9.530000e-74 289.0
48 TraesCS4A01G469300 chr1D 91.038 212 16 3 301 510 44252660 44252870 4.440000e-72 283.0
49 TraesCS4A01G469300 chr1D 90.000 210 18 3 301 508 44037016 44037224 1.240000e-67 268.0
50 TraesCS4A01G469300 chr1D 89.623 212 19 3 301 510 43828870 43829080 4.470000e-67 267.0
51 TraesCS4A01G469300 chr1D 86.207 87 4 6 7032 7117 238466217 238466296 3.730000e-13 87.9
52 TraesCS4A01G469300 chr6A 93.182 308 21 0 513 820 359215115 359214808 3.190000e-123 453.0
53 TraesCS4A01G469300 chr6A 86.928 306 34 6 1 302 359215732 359215429 9.330000e-89 339.0
54 TraesCS4A01G469300 chr6A 93.427 213 14 0 301 513 359215361 359215149 4.370000e-82 316.0
55 TraesCS4A01G469300 chr4D 89.524 315 26 2 513 820 207698715 207698401 7.060000e-105 392.0
56 TraesCS4A01G469300 chr4D 97.143 35 1 0 5623 5657 477519659 477519625 8.140000e-05 60.2
57 TraesCS4A01G469300 chr2D 88.889 315 28 2 513 820 612530580 612530266 1.530000e-101 381.0
58 TraesCS4A01G469300 chr2D 83.081 396 43 16 7119 7506 309066927 309067306 9.330000e-89 339.0
59 TraesCS4A01G469300 chr2D 85.197 304 32 6 7210 7506 517193321 517193618 4.400000e-77 300.0
60 TraesCS4A01G469300 chr3D 84.477 277 30 11 7190 7459 560700963 560700693 2.080000e-65 261.0
61 TraesCS4A01G469300 chr3B 80.984 305 51 7 1 302 164777931 164777631 1.260000e-57 235.0
62 TraesCS4A01G469300 chr2A 80.328 305 53 7 1 302 96611524 96611824 2.730000e-54 224.0
63 TraesCS4A01G469300 chr2A 80.000 305 54 7 1 302 473806726 473806426 1.270000e-52 219.0
64 TraesCS4A01G469300 chr4B 97.143 35 1 0 5623 5657 602457671 602457637 8.140000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G469300 chr4A 731088597 731096105 7508 True 13867.000000 13867 100.000000 1 7509 1 chr4A.!!$R2 7508
1 TraesCS4A01G469300 chr4A 730620079 730623868 3789 False 2393.000000 2758 90.367000 1727 7037 2 chr4A.!!$F3 5310
2 TraesCS4A01G469300 chr4A 729309039 729314151 5112 True 1934.666667 2137 94.328667 1730 7038 3 chr4A.!!$R4 5308
3 TraesCS4A01G469300 chr4A 730488379 730492052 3673 False 1338.666667 2013 89.466667 1727 7037 3 chr4A.!!$F1 5310
4 TraesCS4A01G469300 chr4A 730568063 730571380 3317 False 1226.500000 1893 90.097500 1727 7037 2 chr4A.!!$F2 5310
5 TraesCS4A01G469300 chr4A 610328452 610329020 568 True 251.250000 409 94.617000 7119 7508 2 chr4A.!!$R3 389
6 TraesCS4A01G469300 chr1B 375357391 375359119 1728 False 2643.000000 2643 94.243000 1 1733 1 chr1B.!!$F1 1732
7 TraesCS4A01G469300 chr5B 243413204 243414649 1445 True 2078.000000 2078 92.605000 4150 5595 1 chr5B.!!$R2 1445
8 TraesCS4A01G469300 chr5B 282017730 282019195 1465 True 1943.000000 1943 90.612000 4151 5616 1 chr5B.!!$R3 1465
9 TraesCS4A01G469300 chrUn 340432530 340434967 2437 False 1623.500000 2028 90.162000 3041 7030 2 chrUn.!!$F1 3989
10 TraesCS4A01G469300 chrUn 236186548 236190433 3885 True 321.000000 411 96.977000 7119 7492 2 chrUn.!!$R2 373
11 TraesCS4A01G469300 chr6D 390166474 390167939 1465 False 1978.000000 1978 91.020000 4151 5619 1 chr6D.!!$F1 1468
12 TraesCS4A01G469300 chr6D 469590405 469591851 1446 True 1965.000000 1965 91.229000 4151 5593 1 chr6D.!!$R2 1442
13 TraesCS4A01G469300 chr5D 486750107 486751572 1465 True 1975.000000 1975 90.965000 4151 5620 1 chr5D.!!$R1 1469
14 TraesCS4A01G469300 chr5D 525598096 525599563 1467 True 1953.000000 1953 90.693000 4151 5618 1 chr5D.!!$R2 1467
15 TraesCS4A01G469300 chr7B 746374731 746376193 1462 True 1958.000000 1958 90.816000 4151 5618 1 chr7B.!!$R1 1467
16 TraesCS4A01G469300 chr1A 34975758 34977221 1463 True 1958.000000 1958 90.816000 4152 5618 1 chr1A.!!$R1 1466
17 TraesCS4A01G469300 chr1A 44356251 44356806 555 False 324.000000 381 89.363000 301 817 2 chr1A.!!$F4 516
18 TraesCS4A01G469300 chr1A 44326015 44326570 555 False 323.500000 375 89.438000 301 817 2 chr1A.!!$F3 516
19 TraesCS4A01G469300 chr2B 695690343 695691798 1455 False 1941.000000 1941 90.674000 4151 5619 1 chr2B.!!$F1 1468
20 TraesCS4A01G469300 chr1D 44165889 44166447 558 False 335.000000 381 90.306000 301 817 2 chr1D.!!$F6 516
21 TraesCS4A01G469300 chr6A 359214808 359215732 924 True 369.333333 453 91.179000 1 820 3 chr6A.!!$R1 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 1058 1.374758 GTGTCTTCAGGTGCCTCGG 60.375 63.158 0.00 0.0 0.00 4.63 F
1394 1511 0.658368 CTCAGACAGCATGCATCAGC 59.342 55.000 21.98 0.0 42.53 4.26 F
3015 3175 0.040204 CTCTGGGAAAAGGCCACCAT 59.960 55.000 5.01 0.0 31.62 3.55 F
3780 5261 0.109597 GAAGTTTGCAGCATGGACGG 60.110 55.000 0.00 0.0 34.66 4.79 F
4674 6158 0.034059 AACACCGCTCCACTGAAGAG 59.966 55.000 0.00 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2162 0.034896 AAACAGCCGGATATAGCCCG 59.965 55.0 5.05 5.44 46.10 6.13 R
3172 4653 0.950836 CATTGGTGCTTCCGTCAACA 59.049 50.0 0.00 0.00 39.52 3.33 R
4176 5660 0.469892 TATCCAGATGCAGAGGCCGA 60.470 55.0 0.00 0.00 40.13 5.54 R
5646 7152 0.107410 TGCCGCATTAGGGTTTCGAT 60.107 50.0 0.00 0.00 0.00 3.59 R
6650 8161 0.036858 GATGCGGGGAAGATAGAGGC 60.037 60.0 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 66 5.634020 GCCGAGGTGACATATAATACAGTTC 59.366 44.000 0.00 0.00 0.00 3.01
107 110 5.948992 ACAATTAACTCTTCAGCTTGACC 57.051 39.130 0.00 0.00 0.00 4.02
114 117 3.119316 ACTCTTCAGCTTGACCTGTATCG 60.119 47.826 0.00 0.00 34.47 2.92
152 155 8.197988 AGTTTATAATCTGACCAAGTAAAGCG 57.802 34.615 0.00 0.00 0.00 4.68
205 209 9.410556 CAAATCAGAACCGAAATTAAGAAACAT 57.589 29.630 0.00 0.00 0.00 2.71
246 250 6.741992 TCTACATGCTTCTTAATGTTGTGG 57.258 37.500 0.00 0.00 38.05 4.17
269 273 7.340999 GTGGGCCATATAATATTTTCCGGTTAT 59.659 37.037 10.70 0.00 0.00 1.89
323 396 3.273434 GAACACATATCTGCAGCAAGGA 58.727 45.455 9.47 0.00 0.00 3.36
330 403 1.673665 CTGCAGCAAGGAGTGTCCC 60.674 63.158 0.00 0.00 37.19 4.46
596 704 6.862469 TCTTTAATTCTTTCCCTCGGTCTA 57.138 37.500 0.00 0.00 0.00 2.59
630 738 2.507058 TGCATTGTAAGAGGCCTCATCT 59.493 45.455 33.90 19.75 0.00 2.90
645 753 6.895204 AGGCCTCATCTAGTTCTATTATCTCC 59.105 42.308 0.00 0.00 0.00 3.71
727 835 7.178274 AGCATGACTCATCTCTACTTATAAGGG 59.822 40.741 16.73 8.99 0.00 3.95
766 876 5.143369 TCCTATCTGCATTCTAGCTTGAGA 58.857 41.667 0.00 0.00 34.99 3.27
789 904 7.765307 AGAGTCGATATTGCAAAAACATGAAT 58.235 30.769 1.71 0.00 0.00 2.57
821 936 4.940046 GCATGGATAACAGGACATGGATAG 59.060 45.833 0.00 0.00 40.66 2.08
840 955 1.811266 CAGGGCGATGTTGAGTCCG 60.811 63.158 0.00 0.00 37.18 4.79
885 1000 2.697425 CGCTCGGCAATGACTTCG 59.303 61.111 0.00 0.00 0.00 3.79
904 1019 1.477685 GGTCGTGAGGAAGGTCCCAA 61.478 60.000 0.00 0.00 37.19 4.12
933 1048 2.086426 GCGCACGATCGTGTCTTCA 61.086 57.895 39.58 0.00 46.90 3.02
943 1058 1.374758 GTGTCTTCAGGTGCCTCGG 60.375 63.158 0.00 0.00 0.00 4.63
979 1094 3.258228 TGCGATGGCCATATATACAACG 58.742 45.455 20.84 16.24 38.85 4.10
982 1097 4.032900 GCGATGGCCATATATACAACGAAG 59.967 45.833 20.84 0.00 31.98 3.79
1005 1120 6.708285 AGTGTTTTATGTCCCCACTAACTAG 58.292 40.000 0.00 0.00 34.77 2.57
1008 1123 7.446319 GTGTTTTATGTCCCCACTAACTAGTTT 59.554 37.037 14.49 0.00 33.46 2.66
1009 1124 7.662669 TGTTTTATGTCCCCACTAACTAGTTTC 59.337 37.037 14.49 0.00 33.46 2.78
1014 1129 4.081586 GTCCCCACTAACTAGTTTCCTCAG 60.082 50.000 14.49 7.11 33.46 3.35
1155 1270 7.787623 AAAGATGGAAGGTCATTTTGAATCT 57.212 32.000 0.00 0.00 0.00 2.40
1194 1310 9.827411 AACTAAAATAAATCGACTCTTTGAAGC 57.173 29.630 0.00 0.00 0.00 3.86
1207 1323 9.039870 CGACTCTTTGAAGCAGATTTATCTTAT 57.960 33.333 0.00 0.00 34.22 1.73
1218 1334 9.193806 AGCAGATTTATCTTATTTCAACATGGT 57.806 29.630 0.00 0.00 34.22 3.55
1219 1335 9.241317 GCAGATTTATCTTATTTCAACATGGTG 57.759 33.333 3.69 3.69 34.22 4.17
1289 1406 7.703058 AAGTTTTCTTGTATACTTGGGATGG 57.297 36.000 4.17 0.00 38.88 3.51
1295 1412 5.243954 TCTTGTATACTTGGGATGGATCTCG 59.756 44.000 4.17 0.00 0.00 4.04
1318 1435 5.409520 CGGTTCCACACAATGATATGGATAG 59.590 44.000 5.91 0.00 40.87 2.08
1394 1511 0.658368 CTCAGACAGCATGCATCAGC 59.342 55.000 21.98 0.00 42.53 4.26
1407 1524 1.676916 GCATCAGCCAGTTCTAGTGCA 60.677 52.381 0.00 0.00 33.58 4.57
1417 1534 7.443575 CAGCCAGTTCTAGTGCATAATAAGAAT 59.556 37.037 0.00 0.00 0.00 2.40
1614 1731 6.070767 GGGTACATATCCAGCTAGCTATGAAA 60.071 42.308 25.16 13.55 0.00 2.69
1663 1780 3.523157 TGACTTGAGCTTCCCATTGGATA 59.477 43.478 3.62 0.00 41.40 2.59
1672 1789 4.023707 GCTTCCCATTGGATAGTTCATTCG 60.024 45.833 3.62 0.00 41.40 3.34
1682 1799 6.330278 TGGATAGTTCATTCGAGTAACACAG 58.670 40.000 8.66 0.00 0.00 3.66
1694 1811 7.677454 TCGAGTAACACAGTTAGATAACTCA 57.323 36.000 2.24 0.00 44.19 3.41
1762 1880 2.588596 TGCGCCGCCAGATGTATG 60.589 61.111 6.63 0.00 0.00 2.39
1856 1974 7.041712 TCGTTTTATACATGTCAAGTTGCTTCA 60.042 33.333 0.00 0.00 0.00 3.02
1882 2000 5.698832 TGCTTAATTTGACCGACTTCATTG 58.301 37.500 0.00 0.00 0.00 2.82
1900 2018 1.786937 TGTGCAGGGTTGGTGAATTT 58.213 45.000 0.00 0.00 0.00 1.82
1926 2044 6.046593 CACGTCTATCAGGTTATGGCTTAAA 58.953 40.000 0.00 0.00 0.00 1.52
1937 2055 9.463443 CAGGTTATGGCTTAAACTAATTAATGC 57.537 33.333 10.05 0.00 35.58 3.56
1950 2068 7.268199 ACTAATTAATGCACCTGTGATGATG 57.732 36.000 0.51 0.00 0.00 3.07
1977 2095 5.497464 TCTCCAAGTATTGTCCATTGTCA 57.503 39.130 0.00 0.00 46.99 3.58
1980 2098 7.629157 TCTCCAAGTATTGTCCATTGTCATAA 58.371 34.615 0.00 0.00 46.99 1.90
2012 2130 2.040544 CCAAACAGCGGCGATCCTT 61.041 57.895 12.98 0.00 0.00 3.36
2020 2143 0.732571 GCGGCGATCCTTCAAATCAA 59.267 50.000 12.98 0.00 0.00 2.57
2027 2150 3.484229 CGATCCTTCAAATCAACTGTCGC 60.484 47.826 0.00 0.00 0.00 5.19
2038 2161 1.041447 AACTGTCGCGGGCCTATAGT 61.041 55.000 6.13 0.00 0.00 2.12
2039 2162 1.286260 CTGTCGCGGGCCTATAGTC 59.714 63.158 6.13 0.00 0.00 2.59
2040 2163 2.254651 GTCGCGGGCCTATAGTCG 59.745 66.667 6.13 0.00 0.00 4.18
2055 2178 3.694746 TCGGGCTATATCCGGCTG 58.305 61.111 12.74 1.96 46.78 4.85
2094 2218 6.424812 TCGCACAATTATACATGATTCCTCTG 59.575 38.462 0.00 0.00 0.00 3.35
2134 2269 5.332883 GCACGCTGATCAAACATCTATACTG 60.333 44.000 0.00 0.00 0.00 2.74
2160 2309 9.343103 GTAAGAGCTGGCTATTTAAAACTTTTC 57.657 33.333 7.75 0.00 0.00 2.29
2217 2366 2.104792 CTCTTGGGTTGGTTCTGTGAGA 59.895 50.000 0.00 0.00 0.00 3.27
2226 2375 1.896220 GTTCTGTGAGAACCATGGCA 58.104 50.000 13.04 0.00 46.68 4.92
2280 2429 9.677567 TCATCAATAGCAAAAGAGTTTACAAAC 57.322 29.630 0.00 0.00 39.17 2.93
2512 2666 9.883142 ATTTTGTTGTTGTTTTCTTCCATAAGA 57.117 25.926 0.00 0.00 40.03 2.10
2527 2681 7.872993 TCTTCCATAAGACAAACTAGTGAACAG 59.127 37.037 0.00 0.00 36.80 3.16
2562 2716 8.494016 AGATAAAGTTGCAGGTAGTTAATCAC 57.506 34.615 0.00 0.00 0.00 3.06
2593 2747 0.667993 CTCCCATGCACGTTGTTGTT 59.332 50.000 0.00 0.00 0.00 2.83
2600 2754 0.988439 GCACGTTGTTGTTGTGTTGG 59.012 50.000 0.00 0.00 36.04 3.77
2601 2755 1.401670 GCACGTTGTTGTTGTGTTGGA 60.402 47.619 0.00 0.00 36.04 3.53
2602 2756 2.514902 CACGTTGTTGTTGTGTTGGAG 58.485 47.619 0.00 0.00 0.00 3.86
2604 2758 1.470890 CGTTGTTGTTGTGTTGGAGGT 59.529 47.619 0.00 0.00 0.00 3.85
2606 2760 3.242608 CGTTGTTGTTGTGTTGGAGGTAG 60.243 47.826 0.00 0.00 0.00 3.18
2607 2761 3.637911 TGTTGTTGTGTTGGAGGTAGT 57.362 42.857 0.00 0.00 0.00 2.73
2608 2762 3.958018 TGTTGTTGTGTTGGAGGTAGTT 58.042 40.909 0.00 0.00 0.00 2.24
2610 2764 5.498393 TGTTGTTGTGTTGGAGGTAGTTAA 58.502 37.500 0.00 0.00 0.00 2.01
2611 2765 5.354792 TGTTGTTGTGTTGGAGGTAGTTAAC 59.645 40.000 0.00 0.00 0.00 2.01
2613 2767 6.482898 TGTTGTGTTGGAGGTAGTTAACTA 57.517 37.500 11.38 11.38 0.00 2.24
2615 2769 7.337167 TGTTGTGTTGGAGGTAGTTAACTAAA 58.663 34.615 16.82 4.89 0.00 1.85
2616 2770 7.828223 TGTTGTGTTGGAGGTAGTTAACTAAAA 59.172 33.333 16.82 4.77 0.00 1.52
2680 2840 1.339055 TGGCTACAAGCATGTGGAGTC 60.339 52.381 9.80 0.00 44.75 3.36
2722 2882 1.339610 CGGCCATTTGTGTTTCTTCCA 59.660 47.619 2.24 0.00 0.00 3.53
2727 2887 5.277925 GGCCATTTGTGTTTCTTCCAAAATG 60.278 40.000 0.00 0.00 32.39 2.32
2874 3034 2.088423 TGGTTCCAACATCATAACCGC 58.912 47.619 0.00 0.00 43.53 5.68
2904 3064 4.703899 CAACTCTTGCACAAAAAGATGC 57.296 40.909 0.00 0.00 42.40 3.91
3004 3164 3.811702 CCAGTGCTCCTCTGGGAA 58.188 61.111 4.27 0.00 46.03 3.97
3014 3174 1.460255 CTCTGGGAAAAGGCCACCA 59.540 57.895 5.01 4.13 0.00 4.17
3015 3175 0.040204 CTCTGGGAAAAGGCCACCAT 59.960 55.000 5.01 0.00 31.62 3.55
3076 3236 1.276622 AGCAGTTACCCGGACATTCT 58.723 50.000 0.73 0.00 0.00 2.40
3100 4581 2.290008 TGTCACATACAAACCCAGCGAT 60.290 45.455 0.00 0.00 34.29 4.58
3132 4613 0.559205 TTCCTATCCTCCTACCCGCA 59.441 55.000 0.00 0.00 0.00 5.69
3172 4653 1.590147 CGGCAAGTACCTCGGTCTT 59.410 57.895 0.00 0.00 0.00 3.01
3175 4656 1.270678 GGCAAGTACCTCGGTCTTGTT 60.271 52.381 19.71 0.70 40.14 2.83
3261 4742 0.457337 GACCCGTACACCGATCACAC 60.457 60.000 0.00 0.00 39.56 3.82
3348 4829 0.530650 CGTAGCGAGCCCATGATTGT 60.531 55.000 0.00 0.00 0.00 2.71
3364 4845 2.566833 TTGTGCTGGTGAGCTACAAT 57.433 45.000 0.00 0.00 46.39 2.71
3388 4869 0.517316 GCATGAAACTTCTCGCCGTT 59.483 50.000 0.00 0.00 0.00 4.44
3458 4939 1.006102 ACCGTTGACCTGAAGAGCG 60.006 57.895 0.00 0.00 0.00 5.03
3552 5033 3.119708 GCATGGTCTTTCAACTCCACATC 60.120 47.826 0.00 0.00 32.60 3.06
3704 5185 3.799755 GCGTGTTGATCCGGTGGC 61.800 66.667 0.00 0.00 0.00 5.01
3711 5192 2.007608 GTTGATCCGGTGGCTTCTAAC 58.992 52.381 0.00 0.00 0.00 2.34
3723 5204 1.137086 GCTTCTAACGATGAGGAGGCA 59.863 52.381 0.00 0.00 32.35 4.75
3728 5209 3.461773 CGATGAGGAGGCACCGGT 61.462 66.667 0.00 0.00 44.74 5.28
3748 5229 1.219124 GATGAACGAGGAGCAGGCA 59.781 57.895 0.00 0.00 0.00 4.75
3780 5261 0.109597 GAAGTTTGCAGCATGGACGG 60.110 55.000 0.00 0.00 34.66 4.79
3858 5339 0.663153 GCTGCGACCAACAACTTCTT 59.337 50.000 0.00 0.00 0.00 2.52
3874 5355 3.008485 ACTTCTTCGAGGATGGAAAGCTT 59.992 43.478 13.80 0.00 30.66 3.74
3885 5366 1.494721 TGGAAAGCTTGGAGAAGGTGT 59.505 47.619 0.00 0.00 39.89 4.16
3904 5385 1.445582 CTTCGGGTCGGTGTACAGC 60.446 63.158 15.12 15.12 0.00 4.40
3924 5408 2.283529 GGTCCTTGAGCGACCTGGA 61.284 63.158 0.00 0.00 45.41 3.86
3926 5410 1.112113 GTCCTTGAGCGACCTGGATA 58.888 55.000 0.00 0.00 0.00 2.59
3936 5420 0.237761 GACCTGGATATCGACGTCGG 59.762 60.000 35.05 19.71 40.29 4.79
3937 5421 1.081376 CCTGGATATCGACGTCGGC 60.081 63.158 35.05 21.63 40.29 5.54
3938 5422 1.081376 CTGGATATCGACGTCGGCC 60.081 63.158 35.05 28.19 40.29 6.13
3939 5423 2.126965 GGATATCGACGTCGGCCG 60.127 66.667 35.05 22.12 44.03 6.13
3940 5424 2.126965 GATATCGACGTCGGCCGG 60.127 66.667 35.05 13.23 42.24 6.13
3941 5425 2.901292 GATATCGACGTCGGCCGGT 61.901 63.158 35.05 17.01 42.24 5.28
3942 5426 2.776954 GATATCGACGTCGGCCGGTC 62.777 65.000 35.05 23.61 42.24 4.79
3989 5473 2.674220 GGCAGGGGAGGAAGGAGTG 61.674 68.421 0.00 0.00 0.00 3.51
3996 5480 1.551329 GGGAGGAAGGAGTGTGTCTCT 60.551 57.143 0.00 0.00 42.40 3.10
4021 5505 1.977854 TCACCATCATAAGCCGCCTAT 59.022 47.619 0.00 0.00 0.00 2.57
4029 5513 1.324740 TAAGCCGCCTATGACACCGT 61.325 55.000 0.00 0.00 0.00 4.83
4036 5520 1.935933 CCTATGACACCGTAACCTGC 58.064 55.000 0.00 0.00 0.00 4.85
4061 5545 2.048597 CGTCGGCTGGTGCTACAA 60.049 61.111 0.00 0.00 39.59 2.41
4145 5629 2.985282 CATGGGTGGCAGCGTGTT 60.985 61.111 10.99 0.00 0.00 3.32
4146 5630 2.985282 ATGGGTGGCAGCGTGTTG 60.985 61.111 10.99 0.00 0.00 3.33
4176 5660 5.724370 TTTTTCAGAAAAGGAGGAAAACCCT 59.276 36.000 8.34 0.00 38.52 4.34
4195 5679 0.469892 TCGGCCTCTGCATCTGGATA 60.470 55.000 0.00 0.00 40.13 2.59
4271 5755 7.402862 ACAATAGTAAGACTAAAGCCACCATT 58.597 34.615 0.00 0.00 33.89 3.16
4288 5772 4.072131 ACCATTTAAGCAACATCTGTCGT 58.928 39.130 0.00 0.00 0.00 4.34
4405 5889 4.910585 GGACGCCTGCCGGGTATG 62.911 72.222 2.18 0.00 42.52 2.39
4467 5951 4.910585 GGGTATGAGGCCGCCGTG 62.911 72.222 3.22 0.00 0.00 4.94
4490 5974 1.212688 CACCTGCCACCAATCCATCTA 59.787 52.381 0.00 0.00 0.00 1.98
4494 5978 1.915489 TGCCACCAATCCATCTACAGT 59.085 47.619 0.00 0.00 0.00 3.55
4503 5987 5.069119 CCAATCCATCTACAGTGCTGTACTA 59.931 44.000 7.87 1.05 44.42 1.82
4519 6003 2.698855 ACTATTGCATCGACCTTGCT 57.301 45.000 10.58 0.00 40.77 3.91
4583 6067 2.184830 CCTCCTGCGCATGTCCATG 61.185 63.158 12.24 2.86 41.60 3.66
4628 6112 2.677524 TGCTCCATGCCACCAAGC 60.678 61.111 0.00 0.00 42.00 4.01
4668 6152 1.141053 AGAAAGAAACACCGCTCCACT 59.859 47.619 0.00 0.00 0.00 4.00
4674 6158 0.034059 AACACCGCTCCACTGAAGAG 59.966 55.000 0.00 0.00 0.00 2.85
4719 6203 2.548875 GAGTGCATCTCGAAGAATGCT 58.451 47.619 20.96 8.02 44.83 3.79
4759 6243 0.179059 ACATGAATGCCGCCGTCATA 60.179 50.000 0.00 0.00 30.85 2.15
4866 6355 1.496060 TAAGGGCATCGTCATCACCT 58.504 50.000 0.00 0.00 0.00 4.00
4872 6361 0.176449 CATCGTCATCACCTGCTCCA 59.824 55.000 0.00 0.00 0.00 3.86
4915 6404 0.901114 TCACTCGGATCCGTCCCAAA 60.901 55.000 32.15 12.31 41.83 3.28
4934 6424 1.905637 AAAATCCACCCGACAACCTC 58.094 50.000 0.00 0.00 0.00 3.85
4939 6429 1.003355 CACCCGACAACCTCTGCAT 60.003 57.895 0.00 0.00 0.00 3.96
4954 6444 1.141019 GCATTGTCTCGACCGCCTA 59.859 57.895 0.00 0.00 0.00 3.93
4963 6453 2.349755 GACCGCCTACAAAGCCCA 59.650 61.111 0.00 0.00 0.00 5.36
4993 6483 1.820581 CCTAGATCCGGCGACCAAA 59.179 57.895 9.30 0.00 0.00 3.28
5055 6545 3.372730 GCCTGAATGCGCCACCAA 61.373 61.111 4.18 0.00 0.00 3.67
5096 6586 1.536676 CACCCCACCTCACCAAACT 59.463 57.895 0.00 0.00 0.00 2.66
5137 6629 3.112075 CGCACGCTCATCACCGTT 61.112 61.111 0.00 0.00 35.17 4.44
5178 6670 1.573829 GCAAAACCACGAGATCGCCA 61.574 55.000 1.39 0.00 44.43 5.69
5212 6704 1.284313 TGGATATGGACTGCACCACA 58.716 50.000 0.00 0.00 43.03 4.17
5582 7088 0.250513 CGGCTAGGGTTTGAAGAGCT 59.749 55.000 0.00 0.00 33.57 4.09
5627 7133 4.397832 GCGGGGGCCAACGTCTAA 62.398 66.667 18.87 0.00 0.00 2.10
5628 7134 2.587889 CGGGGGCCAACGTCTAAT 59.412 61.111 4.39 0.00 0.00 1.73
5629 7135 1.817941 CGGGGGCCAACGTCTAATG 60.818 63.158 4.39 0.00 0.00 1.90
5630 7136 1.605453 GGGGGCCAACGTCTAATGA 59.395 57.895 4.39 0.00 0.00 2.57
5631 7137 0.463833 GGGGGCCAACGTCTAATGAG 60.464 60.000 4.39 0.00 0.00 2.90
5632 7138 0.539986 GGGGCCAACGTCTAATGAGA 59.460 55.000 4.39 0.00 0.00 3.27
5648 7154 8.846943 TCTAATGAGACAGATGACTAGAGATC 57.153 38.462 0.00 0.00 0.00 2.75
5649 7155 6.558771 AATGAGACAGATGACTAGAGATCG 57.441 41.667 0.00 0.00 0.00 3.69
5650 7156 5.283457 TGAGACAGATGACTAGAGATCGA 57.717 43.478 0.00 0.00 0.00 3.59
5651 7157 5.675538 TGAGACAGATGACTAGAGATCGAA 58.324 41.667 0.00 0.00 0.00 3.71
5652 7158 6.116126 TGAGACAGATGACTAGAGATCGAAA 58.884 40.000 0.00 0.00 0.00 3.46
5653 7159 6.037720 TGAGACAGATGACTAGAGATCGAAAC 59.962 42.308 0.00 0.00 0.00 2.78
5654 7160 5.298276 AGACAGATGACTAGAGATCGAAACC 59.702 44.000 0.00 0.00 0.00 3.27
5655 7161 4.339814 ACAGATGACTAGAGATCGAAACCC 59.660 45.833 0.00 0.00 0.00 4.11
5656 7162 4.582656 CAGATGACTAGAGATCGAAACCCT 59.417 45.833 0.00 0.00 0.00 4.34
5657 7163 5.765677 CAGATGACTAGAGATCGAAACCCTA 59.234 44.000 0.00 0.00 0.00 3.53
5658 7164 6.263392 CAGATGACTAGAGATCGAAACCCTAA 59.737 42.308 0.00 0.00 0.00 2.69
5659 7165 7.007723 AGATGACTAGAGATCGAAACCCTAAT 58.992 38.462 0.00 0.00 0.00 1.73
5660 7166 6.392625 TGACTAGAGATCGAAACCCTAATG 57.607 41.667 0.00 0.00 0.00 1.90
5661 7167 5.203060 ACTAGAGATCGAAACCCTAATGC 57.797 43.478 0.00 0.00 0.00 3.56
5662 7168 3.099267 AGAGATCGAAACCCTAATGCG 57.901 47.619 0.00 0.00 0.00 4.73
5663 7169 2.135933 GAGATCGAAACCCTAATGCGG 58.864 52.381 0.00 0.00 0.00 5.69
5664 7170 0.586802 GATCGAAACCCTAATGCGGC 59.413 55.000 0.00 0.00 0.00 6.53
5665 7171 0.107410 ATCGAAACCCTAATGCGGCA 60.107 50.000 4.58 4.58 0.00 5.69
5666 7172 0.742990 TCGAAACCCTAATGCGGCAG 60.743 55.000 9.25 0.00 0.00 4.85
5730 7236 1.384989 GCTCGGCACTGCTCTACCTA 61.385 60.000 0.00 0.00 0.00 3.08
5916 7422 1.682684 CCCAGAGTACACGGCCTCT 60.683 63.158 0.00 0.00 38.57 3.69
5944 7450 3.188786 GCACCGCATCTGACGTCC 61.189 66.667 14.12 0.00 0.00 4.79
5946 7452 2.094659 CACCGCATCTGACGTCCAC 61.095 63.158 14.12 0.00 0.00 4.02
6034 7540 1.079256 CTCCTGGAGTGGGTCTGGA 59.921 63.158 15.76 0.00 0.00 3.86
6293 7802 2.688446 CTGATGCTGATGCTGATGGTTT 59.312 45.455 0.00 0.00 40.48 3.27
6294 7803 3.093814 TGATGCTGATGCTGATGGTTTT 58.906 40.909 0.00 0.00 40.48 2.43
6295 7804 3.512329 TGATGCTGATGCTGATGGTTTTT 59.488 39.130 0.00 0.00 40.48 1.94
6317 7826 1.712018 GGCGGTGCCGGAGTTTATTC 61.712 60.000 5.05 0.00 39.62 1.75
6318 7827 0.743345 GCGGTGCCGGAGTTTATTCT 60.743 55.000 5.05 0.00 40.19 2.40
6319 7828 1.734163 CGGTGCCGGAGTTTATTCTT 58.266 50.000 5.05 0.00 35.56 2.52
6329 7838 5.351740 CCGGAGTTTATTCTTCTTCTTCCAC 59.648 44.000 0.00 0.00 0.00 4.02
6402 7911 1.209990 CATCCAGCTCTTCTCCTTGCT 59.790 52.381 0.00 0.00 36.04 3.91
6648 8159 7.719871 AGACTGTAGAGTAAAGGAGCAATTA 57.280 36.000 0.00 0.00 30.16 1.40
6650 8161 8.200792 AGACTGTAGAGTAAAGGAGCAATTATG 58.799 37.037 0.00 0.00 30.16 1.90
6651 8162 7.042389 GACTGTAGAGTAAAGGAGCAATTATGC 60.042 40.741 0.00 0.00 42.30 3.14
6693 8223 5.121105 GGTAATGCTACATTAACGGACCTT 58.879 41.667 1.77 0.00 0.00 3.50
6694 8224 5.587443 GGTAATGCTACATTAACGGACCTTT 59.413 40.000 1.77 0.00 0.00 3.11
6695 8225 6.762661 GGTAATGCTACATTAACGGACCTTTA 59.237 38.462 1.77 0.00 0.00 1.85
6696 8226 6.673154 AATGCTACATTAACGGACCTTTAC 57.327 37.500 0.00 0.00 0.00 2.01
6697 8227 5.149973 TGCTACATTAACGGACCTTTACA 57.850 39.130 0.00 0.00 0.00 2.41
6698 8228 5.172934 TGCTACATTAACGGACCTTTACAG 58.827 41.667 0.00 0.00 0.00 2.74
6700 8230 3.946606 ACATTAACGGACCTTTACAGGG 58.053 45.455 0.00 0.00 46.01 4.45
6701 8231 3.275999 CATTAACGGACCTTTACAGGGG 58.724 50.000 0.00 0.00 46.01 4.79
6702 8232 2.028561 TAACGGACCTTTACAGGGGT 57.971 50.000 0.00 0.00 46.01 4.95
6703 8233 1.142936 AACGGACCTTTACAGGGGTT 58.857 50.000 0.00 0.00 46.01 4.11
6832 8362 2.701951 ACACGTGGGGAAAGAAACTCTA 59.298 45.455 21.57 0.00 0.00 2.43
6872 8402 1.393539 CAACGAGCTTGGGTATTGACG 59.606 52.381 5.79 0.00 0.00 4.35
6944 8474 5.133221 GGCAATATCTTGTACTCCATGGTT 58.867 41.667 12.58 2.52 34.69 3.67
6948 8478 7.119846 GCAATATCTTGTACTCCATGGTTATCC 59.880 40.741 12.58 0.00 34.69 2.59
7048 8578 4.569719 TGGATCTCCCACTTTACCTTTC 57.430 45.455 0.00 0.00 40.82 2.62
7049 8579 3.913799 TGGATCTCCCACTTTACCTTTCA 59.086 43.478 0.00 0.00 40.82 2.69
7050 8580 4.262617 GGATCTCCCACTTTACCTTTCAC 58.737 47.826 0.00 0.00 34.14 3.18
7051 8581 3.782656 TCTCCCACTTTACCTTTCACC 57.217 47.619 0.00 0.00 0.00 4.02
7052 8582 3.323775 TCTCCCACTTTACCTTTCACCT 58.676 45.455 0.00 0.00 0.00 4.00
7053 8583 3.720002 TCTCCCACTTTACCTTTCACCTT 59.280 43.478 0.00 0.00 0.00 3.50
7054 8584 4.167307 TCTCCCACTTTACCTTTCACCTTT 59.833 41.667 0.00 0.00 0.00 3.11
7055 8585 4.466827 TCCCACTTTACCTTTCACCTTTC 58.533 43.478 0.00 0.00 0.00 2.62
7056 8586 4.079672 TCCCACTTTACCTTTCACCTTTCA 60.080 41.667 0.00 0.00 0.00 2.69
7057 8587 4.832823 CCCACTTTACCTTTCACCTTTCAT 59.167 41.667 0.00 0.00 0.00 2.57
7058 8588 5.304357 CCCACTTTACCTTTCACCTTTCATT 59.696 40.000 0.00 0.00 0.00 2.57
7059 8589 6.447162 CCACTTTACCTTTCACCTTTCATTC 58.553 40.000 0.00 0.00 0.00 2.67
7060 8590 6.040391 CCACTTTACCTTTCACCTTTCATTCA 59.960 38.462 0.00 0.00 0.00 2.57
7061 8591 6.918022 CACTTTACCTTTCACCTTTCATTCAC 59.082 38.462 0.00 0.00 0.00 3.18
7062 8592 6.040504 ACTTTACCTTTCACCTTTCATTCACC 59.959 38.462 0.00 0.00 0.00 4.02
7063 8593 3.230976 ACCTTTCACCTTTCATTCACCC 58.769 45.455 0.00 0.00 0.00 4.61
7064 8594 2.562738 CCTTTCACCTTTCATTCACCCC 59.437 50.000 0.00 0.00 0.00 4.95
7065 8595 2.302587 TTCACCTTTCATTCACCCCC 57.697 50.000 0.00 0.00 0.00 5.40
7066 8596 1.455822 TCACCTTTCATTCACCCCCT 58.544 50.000 0.00 0.00 0.00 4.79
7067 8597 1.786441 TCACCTTTCATTCACCCCCTT 59.214 47.619 0.00 0.00 0.00 3.95
7068 8598 2.178984 TCACCTTTCATTCACCCCCTTT 59.821 45.455 0.00 0.00 0.00 3.11
7069 8599 2.972021 CACCTTTCATTCACCCCCTTTT 59.028 45.455 0.00 0.00 0.00 2.27
7070 8600 3.006859 CACCTTTCATTCACCCCCTTTTC 59.993 47.826 0.00 0.00 0.00 2.29
7071 8601 3.116746 ACCTTTCATTCACCCCCTTTTCT 60.117 43.478 0.00 0.00 0.00 2.52
7072 8602 3.903714 CCTTTCATTCACCCCCTTTTCTT 59.096 43.478 0.00 0.00 0.00 2.52
7073 8603 4.021104 CCTTTCATTCACCCCCTTTTCTTC 60.021 45.833 0.00 0.00 0.00 2.87
7074 8604 4.469469 TTCATTCACCCCCTTTTCTTCT 57.531 40.909 0.00 0.00 0.00 2.85
7075 8605 4.034285 TCATTCACCCCCTTTTCTTCTC 57.966 45.455 0.00 0.00 0.00 2.87
7076 8606 3.657727 TCATTCACCCCCTTTTCTTCTCT 59.342 43.478 0.00 0.00 0.00 3.10
7077 8607 3.790089 TTCACCCCCTTTTCTTCTCTC 57.210 47.619 0.00 0.00 0.00 3.20
7078 8608 1.985895 TCACCCCCTTTTCTTCTCTCC 59.014 52.381 0.00 0.00 0.00 3.71
7079 8609 1.004862 CACCCCCTTTTCTTCTCTCCC 59.995 57.143 0.00 0.00 0.00 4.30
7080 8610 1.132036 ACCCCCTTTTCTTCTCTCCCT 60.132 52.381 0.00 0.00 0.00 4.20
7081 8611 1.562008 CCCCCTTTTCTTCTCTCCCTC 59.438 57.143 0.00 0.00 0.00 4.30
7082 8612 2.556766 CCCCTTTTCTTCTCTCCCTCT 58.443 52.381 0.00 0.00 0.00 3.69
7083 8613 2.503765 CCCCTTTTCTTCTCTCCCTCTC 59.496 54.545 0.00 0.00 0.00 3.20
7084 8614 3.449918 CCCTTTTCTTCTCTCCCTCTCT 58.550 50.000 0.00 0.00 0.00 3.10
7085 8615 3.450817 CCCTTTTCTTCTCTCCCTCTCTC 59.549 52.174 0.00 0.00 0.00 3.20
7086 8616 4.352893 CCTTTTCTTCTCTCCCTCTCTCT 58.647 47.826 0.00 0.00 0.00 3.10
7087 8617 4.777366 CCTTTTCTTCTCTCCCTCTCTCTT 59.223 45.833 0.00 0.00 0.00 2.85
7088 8618 5.248248 CCTTTTCTTCTCTCCCTCTCTCTTT 59.752 44.000 0.00 0.00 0.00 2.52
7089 8619 5.736951 TTTCTTCTCTCCCTCTCTCTTTG 57.263 43.478 0.00 0.00 0.00 2.77
7090 8620 3.707316 TCTTCTCTCCCTCTCTCTTTGG 58.293 50.000 0.00 0.00 0.00 3.28
7091 8621 3.335183 TCTTCTCTCCCTCTCTCTTTGGA 59.665 47.826 0.00 0.00 0.00 3.53
7092 8622 3.380471 TCTCTCCCTCTCTCTTTGGAG 57.620 52.381 0.00 0.00 44.69 3.86
7095 8625 3.885724 CTCCCTCTCTCTTTGGAGAAC 57.114 52.381 0.00 0.00 46.50 3.01
7096 8626 2.165437 CTCCCTCTCTCTTTGGAGAACG 59.835 54.545 0.00 0.00 46.50 3.95
7097 8627 1.205893 CCCTCTCTCTTTGGAGAACGG 59.794 57.143 0.00 0.00 46.50 4.44
7098 8628 1.205893 CCTCTCTCTTTGGAGAACGGG 59.794 57.143 0.00 0.00 46.50 5.28
7099 8629 1.205893 CTCTCTCTTTGGAGAACGGGG 59.794 57.143 0.00 0.00 46.50 5.73
7100 8630 1.203137 TCTCTCTTTGGAGAACGGGGA 60.203 52.381 0.00 0.00 46.50 4.81
7101 8631 1.623811 CTCTCTTTGGAGAACGGGGAA 59.376 52.381 0.00 0.00 46.50 3.97
7102 8632 2.237392 CTCTCTTTGGAGAACGGGGAAT 59.763 50.000 0.00 0.00 46.50 3.01
7103 8633 3.446968 TCTCTTTGGAGAACGGGGAATA 58.553 45.455 0.00 0.00 44.62 1.75
7104 8634 3.451178 TCTCTTTGGAGAACGGGGAATAG 59.549 47.826 0.00 0.00 44.62 1.73
7105 8635 3.178865 TCTTTGGAGAACGGGGAATAGT 58.821 45.455 0.00 0.00 0.00 2.12
7106 8636 3.585732 TCTTTGGAGAACGGGGAATAGTT 59.414 43.478 0.00 0.00 0.00 2.24
7107 8637 3.343941 TTGGAGAACGGGGAATAGTTG 57.656 47.619 0.00 0.00 0.00 3.16
7108 8638 1.557832 TGGAGAACGGGGAATAGTTGG 59.442 52.381 0.00 0.00 0.00 3.77
7109 8639 1.558294 GGAGAACGGGGAATAGTTGGT 59.442 52.381 0.00 0.00 0.00 3.67
7110 8640 2.026542 GGAGAACGGGGAATAGTTGGTT 60.027 50.000 0.00 0.00 0.00 3.67
7111 8641 3.560668 GGAGAACGGGGAATAGTTGGTTT 60.561 47.826 0.00 0.00 0.00 3.27
7112 8642 4.077108 GAGAACGGGGAATAGTTGGTTTT 58.923 43.478 0.00 0.00 0.00 2.43
7113 8643 5.245584 AGAACGGGGAATAGTTGGTTTTA 57.754 39.130 0.00 0.00 0.00 1.52
7114 8644 5.633117 AGAACGGGGAATAGTTGGTTTTAA 58.367 37.500 0.00 0.00 0.00 1.52
7115 8645 5.474532 AGAACGGGGAATAGTTGGTTTTAAC 59.525 40.000 0.00 0.00 0.00 2.01
7116 8646 4.727677 ACGGGGAATAGTTGGTTTTAACA 58.272 39.130 0.00 0.00 33.02 2.41
7117 8647 4.763279 ACGGGGAATAGTTGGTTTTAACAG 59.237 41.667 0.00 0.00 33.02 3.16
7162 8692 3.007323 GAACCCTACCGCCCCAGT 61.007 66.667 0.00 0.00 0.00 4.00
7289 8999 0.877071 CTGCGCACTCTTCACCAATT 59.123 50.000 5.66 0.00 0.00 2.32
7504 12724 4.203076 ATCGGTAGGCCACGACGC 62.203 66.667 17.51 0.00 42.39 5.19
7508 12728 2.125673 GTAGGCCACGACGCATGT 60.126 61.111 5.01 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.328637 GGACTCAGGGGGTAGTTAAAACA 59.671 47.826 0.00 0.00 0.00 2.83
237 241 8.374743 GGAAAATATTATATGGCCCACAACATT 58.625 33.333 0.00 0.00 0.00 2.71
246 250 8.410912 GGAATAACCGGAAAATATTATATGGCC 58.589 37.037 9.46 0.00 0.00 5.36
269 273 8.016652 TCCCTATGTTTCTTGATAGGATAGGAA 58.983 37.037 0.00 0.00 42.77 3.36
323 396 2.789409 GTCCTATGCTTTGGGACACT 57.211 50.000 14.82 0.00 46.14 3.55
330 403 4.498682 GCTATTGCCTTGTCCTATGCTTTG 60.499 45.833 0.00 0.00 0.00 2.77
345 419 6.070767 TCCTCCATGTATTAGTAGCTATTGCC 60.071 42.308 0.00 0.00 40.80 4.52
416 490 2.532843 AGGCAGCAATTGACAGGAAAT 58.467 42.857 10.34 0.00 37.23 2.17
568 676 6.599638 ACCGAGGGAAAGAATTAAAGAAGATG 59.400 38.462 0.00 0.00 0.00 2.90
596 704 6.293698 TCTTACAATGCACTGCTGATATGAT 58.706 36.000 0.00 0.00 0.00 2.45
630 738 7.173032 TGGTATGCTCGGAGATAATAGAACTA 58.827 38.462 9.69 0.00 33.89 2.24
766 876 7.537715 TCATTCATGTTTTTGCAATATCGACT 58.462 30.769 0.00 0.00 0.00 4.18
789 904 3.473625 CTGTTATCCATGCAGCAGATCA 58.526 45.455 0.00 0.00 0.00 2.92
821 936 2.109126 GGACTCAACATCGCCCTGC 61.109 63.158 0.00 0.00 0.00 4.85
840 955 4.179926 TGGATGTCTATGCTATTCGCTC 57.820 45.455 0.00 0.00 40.11 5.03
885 1000 1.477685 TTGGGACCTTCCTCACGACC 61.478 60.000 0.00 0.00 36.57 4.79
923 1038 1.666011 GAGGCACCTGAAGACACGA 59.334 57.895 0.00 0.00 0.00 4.35
943 1058 2.456119 CGCAACACTCCTCGCCATC 61.456 63.158 0.00 0.00 0.00 3.51
979 1094 6.002082 AGTTAGTGGGGACATAAAACACTTC 58.998 40.000 0.00 0.00 46.14 3.01
982 1097 6.470278 ACTAGTTAGTGGGGACATAAAACAC 58.530 40.000 0.00 0.00 46.14 3.32
1005 1120 0.874390 TCGCAACATGCTGAGGAAAC 59.126 50.000 0.00 0.00 42.25 2.78
1008 1123 0.671472 CAGTCGCAACATGCTGAGGA 60.671 55.000 0.00 0.00 42.25 3.71
1009 1124 0.671472 TCAGTCGCAACATGCTGAGG 60.671 55.000 0.00 0.00 42.25 3.86
1014 1129 2.405892 ACTTTTCAGTCGCAACATGC 57.594 45.000 0.00 0.00 40.69 4.06
1027 1142 9.455847 GGCATCATTACATCAGATAAACTTTTC 57.544 33.333 0.00 0.00 0.00 2.29
1137 1252 8.567285 TTCTTAGAGATTCAAAATGACCTTCC 57.433 34.615 0.00 0.00 0.00 3.46
1207 1323 6.179756 AGCTATATGTCACACCATGTTGAAA 58.820 36.000 0.00 0.00 0.00 2.69
1289 1406 2.972625 TCATTGTGTGGAACCGAGATC 58.027 47.619 0.00 0.00 34.36 2.75
1295 1412 6.533730 TCTATCCATATCATTGTGTGGAACC 58.466 40.000 10.03 0.00 43.41 3.62
1331 1448 5.824624 TGTTCCATCTATGAATCCTTGCTTC 59.175 40.000 0.00 0.00 0.00 3.86
1346 1463 9.857656 AACATATCTGTATTCAATGTTCCATCT 57.142 29.630 0.00 0.00 36.33 2.90
1365 1482 5.930569 TGCATGCTGTCTGAGATAACATATC 59.069 40.000 20.33 0.00 0.00 1.63
1379 1496 1.030488 ACTGGCTGATGCATGCTGTC 61.030 55.000 20.33 16.79 41.91 3.51
1381 1498 0.100682 GAACTGGCTGATGCATGCTG 59.899 55.000 20.33 7.65 41.91 4.41
1460 1577 7.761409 TGATTAGTGCCATTTATTGTCAAGTC 58.239 34.615 0.00 0.00 0.00 3.01
1461 1578 7.611467 TCTGATTAGTGCCATTTATTGTCAAGT 59.389 33.333 0.00 0.00 0.00 3.16
1465 1582 9.056005 TGTATCTGATTAGTGCCATTTATTGTC 57.944 33.333 0.00 0.00 0.00 3.18
1515 1632 2.600470 AGCAACCACCATGTTGTTTG 57.400 45.000 0.00 0.00 45.80 2.93
1588 1705 2.171840 AGCTAGCTGGATATGTACCCG 58.828 52.381 18.57 0.00 0.00 5.28
1589 1706 4.956700 TCATAGCTAGCTGGATATGTACCC 59.043 45.833 27.74 0.00 37.03 3.69
1591 1708 9.442047 AAATTTCATAGCTAGCTGGATATGTAC 57.558 33.333 27.74 0.00 37.03 2.90
1663 1780 6.978338 TCTAACTGTGTTACTCGAATGAACT 58.022 36.000 5.62 0.00 0.00 3.01
1672 1789 9.303537 GGAATGAGTTATCTAACTGTGTTACTC 57.696 37.037 7.32 0.00 45.84 2.59
1682 1799 5.428253 TGGCAGTGGAATGAGTTATCTAAC 58.572 41.667 0.00 0.00 36.46 2.34
1694 1811 2.885135 TCTGACATTGGCAGTGGAAT 57.115 45.000 18.89 0.00 34.98 3.01
1762 1880 6.206498 GGAACAAGTTGAACTGGTGATTAAC 58.794 40.000 6.05 0.00 31.46 2.01
1802 1920 8.954350 CCAACTGAGAGAGATGTTTGAATTAAT 58.046 33.333 0.00 0.00 0.00 1.40
1856 1974 3.059352 AGTCGGTCAAATTAAGCAGCT 57.941 42.857 0.00 0.00 0.00 4.24
1882 2000 1.000843 GGAAATTCACCAACCCTGCAC 59.999 52.381 0.00 0.00 0.00 4.57
1900 2018 2.364324 GCCATAACCTGATAGACGTGGA 59.636 50.000 0.00 0.00 0.00 4.02
1926 2044 6.263842 CCATCATCACAGGTGCATTAATTAGT 59.736 38.462 0.00 0.00 0.00 2.24
1934 2052 0.257905 AGCCATCATCACAGGTGCAT 59.742 50.000 0.00 0.00 0.00 3.96
1937 2055 3.556633 GGAGATAGCCATCATCACAGGTG 60.557 52.174 0.00 0.00 33.21 4.00
1950 2068 4.689612 TGGACAATACTTGGAGATAGCC 57.310 45.455 0.00 0.00 34.12 3.93
2012 2130 1.573829 GCCCGCGACAGTTGATTTGA 61.574 55.000 8.23 0.00 0.00 2.69
2020 2143 1.453762 GACTATAGGCCCGCGACAGT 61.454 60.000 8.23 0.00 0.00 3.55
2039 2162 0.034896 AAACAGCCGGATATAGCCCG 59.965 55.000 5.05 5.44 46.10 6.13
2040 2163 1.071699 TGAAACAGCCGGATATAGCCC 59.928 52.381 5.05 0.00 0.00 5.19
2087 2211 2.356125 GCTAAATGACCAGCCAGAGGAA 60.356 50.000 0.00 0.00 0.00 3.36
2094 2218 1.748879 TGCCGCTAAATGACCAGCC 60.749 57.895 0.00 0.00 34.15 4.85
2114 2238 9.190858 CTCTTACAGTATAGATGTTTGATCAGC 57.809 37.037 0.00 0.00 32.02 4.26
2126 2250 7.841282 AAATAGCCAGCTCTTACAGTATAGA 57.159 36.000 0.00 0.00 0.00 1.98
2134 2269 9.343103 GAAAAGTTTTAAATAGCCAGCTCTTAC 57.657 33.333 0.00 0.00 0.00 2.34
2160 2309 5.942826 AGTTGAGAGAAGCTTTGGGAAATAG 59.057 40.000 0.00 0.00 0.00 1.73
2165 2314 2.975489 AGAGTTGAGAGAAGCTTTGGGA 59.025 45.455 0.00 0.00 0.00 4.37
2217 2366 2.093021 GCCCAACAATTATGCCATGGTT 60.093 45.455 14.67 3.97 0.00 3.67
2219 2368 1.485480 TGCCCAACAATTATGCCATGG 59.515 47.619 7.63 7.63 0.00 3.66
2226 2375 7.779754 TGCTTATGATATGCCCAACAATTAT 57.220 32.000 7.72 0.00 0.00 1.28
2280 2429 7.494625 TGGAAAGCTATAAGTTTGGACGATAAG 59.505 37.037 0.00 0.00 0.00 1.73
2286 2435 6.374333 TGACATGGAAAGCTATAAGTTTGGAC 59.626 38.462 0.00 0.00 0.00 4.02
2475 2627 5.417811 ACAACAACAAAATGAGTGCATTGA 58.582 33.333 2.61 0.00 43.71 2.57
2512 2666 9.106070 CTTTTAGTTACCTGTTCACTAGTTTGT 57.894 33.333 0.00 0.00 0.00 2.83
2527 2681 8.107399 ACCTGCAACTTTATCTTTTAGTTACC 57.893 34.615 0.00 0.00 31.30 2.85
2562 2716 3.089838 TGGGAGCCCACCATTCAG 58.910 61.111 3.58 0.00 41.89 3.02
2593 2747 7.794041 TCTTTTAGTTAACTACCTCCAACACA 58.206 34.615 14.96 0.00 0.00 3.72
2680 2840 1.328680 CGCATGGGATGAAGAAGAACG 59.671 52.381 3.11 0.00 0.00 3.95
2722 2882 4.352009 TCATTGCCACTACCATCCATTTT 58.648 39.130 0.00 0.00 0.00 1.82
2727 2887 2.717639 ACTCATTGCCACTACCATCC 57.282 50.000 0.00 0.00 0.00 3.51
2904 3064 1.892474 GGGTGAGCTCTATCAGGCTAG 59.108 57.143 16.19 0.00 39.05 3.42
3014 3174 2.035449 TCGTGAAACTTGTCACCTCGAT 59.965 45.455 0.01 0.00 44.23 3.59
3015 3175 1.406180 TCGTGAAACTTGTCACCTCGA 59.594 47.619 0.01 0.00 44.23 4.04
3076 3236 2.857483 CTGGGTTTGTATGTGACACCA 58.143 47.619 2.45 0.00 37.96 4.17
3100 4581 1.971357 GATAGGAAGAAGGCGATCCCA 59.029 52.381 3.45 0.00 35.39 4.37
3132 4613 2.624029 CCATGGTAGGGTGGCAATTCTT 60.624 50.000 2.57 0.00 0.00 2.52
3142 4623 3.334891 TTGCCGCCATGGTAGGGT 61.335 61.111 23.75 0.00 41.21 4.34
3172 4653 0.950836 CATTGGTGCTTCCGTCAACA 59.049 50.000 0.00 0.00 39.52 3.33
3261 4742 1.226603 GAGTTGACGTCGATCCCGG 60.227 63.158 9.14 0.00 36.24 5.73
3364 4845 2.002586 GCGAGAAGTTTCATGCTGCTA 58.997 47.619 0.00 0.00 0.00 3.49
3388 4869 2.662596 CGCTCCAGTTGTAGGGCA 59.337 61.111 0.00 0.00 0.00 5.36
3469 4950 2.610859 AACCCGATGGCCACCTCT 60.611 61.111 8.16 0.00 33.59 3.69
3552 5033 2.033801 GGCACCAAATTCATCTCCATCG 59.966 50.000 0.00 0.00 0.00 3.84
3704 5185 2.482142 GGTGCCTCCTCATCGTTAGAAG 60.482 54.545 0.00 0.00 0.00 2.85
3711 5192 3.461773 ACCGGTGCCTCCTCATCG 61.462 66.667 6.12 0.00 40.05 3.84
3723 5204 1.605058 CTCCTCGTTCATCCACCGGT 61.605 60.000 0.00 0.00 0.00 5.28
3728 5209 1.900351 CCTGCTCCTCGTTCATCCA 59.100 57.895 0.00 0.00 0.00 3.41
3748 5229 2.488153 GCAAACTTCCAAGTCCGCTATT 59.512 45.455 6.02 0.00 38.57 1.73
3780 5261 3.226347 CCATTTTCGAACTTGAACTCGC 58.774 45.455 0.00 0.00 35.04 5.03
3785 5266 1.335506 GGCGCCATTTTCGAACTTGAA 60.336 47.619 24.80 0.00 0.00 2.69
3858 5339 1.208052 CTCCAAGCTTTCCATCCTCGA 59.792 52.381 0.00 0.00 0.00 4.04
3874 5355 0.471211 ACCCGAAGACACCTTCTCCA 60.471 55.000 0.00 0.00 45.06 3.86
3885 5366 1.870055 GCTGTACACCGACCCGAAGA 61.870 60.000 0.00 0.00 0.00 2.87
3924 5408 2.901292 GACCGGCCGACGTCGATAT 61.901 63.158 37.65 18.30 43.02 1.63
3939 5423 2.036089 GGATATCCTCTTGACGGTGACC 59.964 54.545 14.97 0.00 0.00 4.02
3940 5424 2.693591 TGGATATCCTCTTGACGGTGAC 59.306 50.000 22.35 0.00 36.82 3.67
3941 5425 3.026707 TGGATATCCTCTTGACGGTGA 57.973 47.619 22.35 0.00 36.82 4.02
3942 5426 3.384789 TCTTGGATATCCTCTTGACGGTG 59.615 47.826 22.35 1.65 36.82 4.94
3943 5427 3.639094 CTCTTGGATATCCTCTTGACGGT 59.361 47.826 22.35 0.00 36.82 4.83
3989 5473 1.895798 TGATGGTGACCTCAGAGACAC 59.104 52.381 2.11 15.06 0.00 3.67
3996 5480 1.138859 CGGCTTATGATGGTGACCTCA 59.861 52.381 2.11 4.68 0.00 3.86
4021 5505 1.174078 TCGAGCAGGTTACGGTGTCA 61.174 55.000 0.00 0.00 0.00 3.58
4029 5513 1.801332 GACGAGCTCGAGCAGGTTA 59.199 57.895 40.58 0.00 45.16 2.85
4036 5520 4.544689 CCAGCCGACGAGCTCGAG 62.545 72.222 40.58 30.31 46.14 4.04
4057 5541 1.373748 GGAGCTCGCCGTTGTTGTA 60.374 57.895 7.83 0.00 0.00 2.41
4171 5655 3.011517 ATGCAGAGGCCGAGGGTT 61.012 61.111 0.00 0.00 40.13 4.11
4176 5660 0.469892 TATCCAGATGCAGAGGCCGA 60.470 55.000 0.00 0.00 40.13 5.54
4242 5726 8.827677 GGTGGCTTTAGTCTTACTATTGTATTG 58.172 37.037 0.00 0.00 29.64 1.90
4243 5727 8.545472 TGGTGGCTTTAGTCTTACTATTGTATT 58.455 33.333 0.00 0.00 29.64 1.89
4271 5755 4.927425 GGAGTAACGACAGATGTTGCTTAA 59.073 41.667 0.00 0.00 41.41 1.85
4288 5772 5.366768 CCCTTCATCAACTGGATAGGAGTAA 59.633 44.000 0.00 0.00 34.78 2.24
4490 5974 3.119137 TCGATGCAATAGTACAGCACTGT 60.119 43.478 8.57 8.57 46.87 3.55
4494 5978 2.430694 AGGTCGATGCAATAGTACAGCA 59.569 45.455 0.00 0.00 43.14 4.41
4503 5987 1.091771 CCGAGCAAGGTCGATGCAAT 61.092 55.000 21.59 0.00 46.22 3.56
4583 6067 0.602638 TTGGCGTCAGATGTGTGGTC 60.603 55.000 0.00 0.00 0.00 4.02
4628 6112 2.370281 ACATATTCATAGAGGCCGCG 57.630 50.000 0.00 0.00 0.00 6.46
4631 6115 8.994170 GTTTCTTTCTACATATTCATAGAGGCC 58.006 37.037 0.00 0.00 0.00 5.19
4635 6119 9.529325 CGGTGTTTCTTTCTACATATTCATAGA 57.471 33.333 0.00 0.00 0.00 1.98
4637 6121 7.985184 AGCGGTGTTTCTTTCTACATATTCATA 59.015 33.333 0.00 0.00 0.00 2.15
4668 6152 2.586245 CAGCGGATGGCCTCTTCA 59.414 61.111 3.32 0.00 45.17 3.02
4710 6194 1.478631 CCTTGGGGGAAGCATTCTTC 58.521 55.000 0.00 0.00 46.56 2.87
4785 6270 0.708209 AAACCCACCCAATACCTCCC 59.292 55.000 0.00 0.00 0.00 4.30
4866 6355 4.680237 CGGTCGTTGGCTGGAGCA 62.680 66.667 0.20 0.00 44.36 4.26
4872 6361 2.035237 TTGGTCTTCGGTCGTTGGCT 62.035 55.000 0.00 0.00 0.00 4.75
4915 6404 1.423921 AGAGGTTGTCGGGTGGATTTT 59.576 47.619 0.00 0.00 0.00 1.82
4934 6424 2.456119 GGCGGTCGAGACAATGCAG 61.456 63.158 5.55 0.00 0.00 4.41
4939 6429 0.675083 TTTGTAGGCGGTCGAGACAA 59.325 50.000 5.55 0.00 0.00 3.18
4954 6444 1.407437 CGGCTAGATCTTGGGCTTTGT 60.407 52.381 0.00 0.00 0.00 2.83
4993 6483 3.585990 GTGGCACTGCTGTTGCGT 61.586 61.111 11.13 0.00 43.34 5.24
5055 6545 2.040043 CCTCCTCCCAGGCTCCAT 60.040 66.667 0.00 0.00 34.61 3.41
5178 6670 2.436646 CCAAGGCGGATCTGCGTT 60.437 61.111 25.03 25.03 43.12 4.84
5305 6802 2.048127 GCGACGTGAAGAGGGCTT 60.048 61.111 0.00 0.00 36.96 4.35
5306 6803 4.070552 GGCGACGTGAAGAGGGCT 62.071 66.667 0.00 0.00 0.00 5.19
5535 7037 0.701310 ACCACCACCTTCCTCCCTTT 60.701 55.000 0.00 0.00 0.00 3.11
5623 7129 7.602265 CGATCTCTAGTCATCTGTCTCATTAGA 59.398 40.741 0.00 0.00 0.00 2.10
5624 7130 7.602265 TCGATCTCTAGTCATCTGTCTCATTAG 59.398 40.741 0.00 0.00 0.00 1.73
5625 7131 7.445945 TCGATCTCTAGTCATCTGTCTCATTA 58.554 38.462 0.00 0.00 0.00 1.90
5626 7132 6.295249 TCGATCTCTAGTCATCTGTCTCATT 58.705 40.000 0.00 0.00 0.00 2.57
5627 7133 5.863965 TCGATCTCTAGTCATCTGTCTCAT 58.136 41.667 0.00 0.00 0.00 2.90
5628 7134 5.283457 TCGATCTCTAGTCATCTGTCTCA 57.717 43.478 0.00 0.00 0.00 3.27
5629 7135 6.427150 GTTTCGATCTCTAGTCATCTGTCTC 58.573 44.000 0.00 0.00 0.00 3.36
5630 7136 5.298276 GGTTTCGATCTCTAGTCATCTGTCT 59.702 44.000 0.00 0.00 0.00 3.41
5631 7137 5.506649 GGGTTTCGATCTCTAGTCATCTGTC 60.507 48.000 0.00 0.00 0.00 3.51
5632 7138 4.339814 GGGTTTCGATCTCTAGTCATCTGT 59.660 45.833 0.00 0.00 0.00 3.41
5633 7139 4.582656 AGGGTTTCGATCTCTAGTCATCTG 59.417 45.833 0.00 0.00 0.00 2.90
5634 7140 4.798882 AGGGTTTCGATCTCTAGTCATCT 58.201 43.478 0.00 0.00 0.00 2.90
5635 7141 6.636562 TTAGGGTTTCGATCTCTAGTCATC 57.363 41.667 0.00 0.00 0.00 2.92
5636 7142 6.517529 GCATTAGGGTTTCGATCTCTAGTCAT 60.518 42.308 0.00 0.00 0.00 3.06
5637 7143 5.221263 GCATTAGGGTTTCGATCTCTAGTCA 60.221 44.000 0.00 0.00 0.00 3.41
5638 7144 5.224135 GCATTAGGGTTTCGATCTCTAGTC 58.776 45.833 0.00 0.00 0.00 2.59
5639 7145 4.261656 CGCATTAGGGTTTCGATCTCTAGT 60.262 45.833 0.00 0.00 0.00 2.57
5640 7146 4.230657 CGCATTAGGGTTTCGATCTCTAG 58.769 47.826 0.00 0.00 0.00 2.43
5641 7147 3.005472 CCGCATTAGGGTTTCGATCTCTA 59.995 47.826 0.00 0.00 0.00 2.43
5642 7148 2.224066 CCGCATTAGGGTTTCGATCTCT 60.224 50.000 0.00 0.00 0.00 3.10
5643 7149 2.135933 CCGCATTAGGGTTTCGATCTC 58.864 52.381 0.00 0.00 0.00 2.75
5644 7150 1.810412 GCCGCATTAGGGTTTCGATCT 60.810 52.381 0.00 0.00 0.00 2.75
5645 7151 0.586802 GCCGCATTAGGGTTTCGATC 59.413 55.000 0.00 0.00 0.00 3.69
5646 7152 0.107410 TGCCGCATTAGGGTTTCGAT 60.107 50.000 0.00 0.00 0.00 3.59
5647 7153 0.742990 CTGCCGCATTAGGGTTTCGA 60.743 55.000 0.00 0.00 0.00 3.71
5648 7154 1.721487 CTGCCGCATTAGGGTTTCG 59.279 57.895 0.00 0.00 0.00 3.46
5649 7155 1.433471 GCTGCCGCATTAGGGTTTC 59.567 57.895 0.00 0.00 35.78 2.78
5650 7156 2.406616 CGCTGCCGCATTAGGGTTT 61.407 57.895 0.00 0.00 35.30 3.27
5651 7157 2.824041 CGCTGCCGCATTAGGGTT 60.824 61.111 0.00 0.00 35.30 4.11
5652 7158 4.096003 ACGCTGCCGCATTAGGGT 62.096 61.111 0.00 0.00 38.22 4.34
5653 7159 3.576356 CACGCTGCCGCATTAGGG 61.576 66.667 0.00 0.00 38.22 3.53
5654 7160 2.398554 AACACGCTGCCGCATTAGG 61.399 57.895 0.00 0.00 38.22 2.69
5655 7161 1.226101 CAACACGCTGCCGCATTAG 60.226 57.895 0.00 0.00 38.22 1.73
5656 7162 2.866750 CAACACGCTGCCGCATTA 59.133 55.556 0.00 0.00 38.22 1.90
5657 7163 4.705519 GCAACACGCTGCCGCATT 62.706 61.111 0.00 0.00 36.25 3.56
5707 7213 2.507110 TAGAGCAGTGCCGAGCCAAC 62.507 60.000 12.58 0.00 0.00 3.77
5770 7276 2.872557 CATGACGTTGCTGGGCTG 59.127 61.111 0.00 0.00 0.00 4.85
5828 7334 2.351244 TGGTCGAGGAGCTTCGCAT 61.351 57.895 2.86 0.00 40.29 4.73
5944 7450 1.568612 AACACGATGCCGAAGCTGTG 61.569 55.000 0.00 0.00 40.66 3.66
5946 7452 1.133253 CAACACGATGCCGAAGCTG 59.867 57.895 0.00 0.00 40.80 4.24
6034 7540 2.530701 CCGGCCATAGAGATAGAGGTT 58.469 52.381 2.24 0.00 0.00 3.50
6037 7543 1.479709 CCCCGGCCATAGAGATAGAG 58.520 60.000 2.24 0.00 0.00 2.43
6038 7544 0.614979 GCCCCGGCCATAGAGATAGA 60.615 60.000 2.24 0.00 34.56 1.98
6039 7545 1.901085 GCCCCGGCCATAGAGATAG 59.099 63.158 2.24 0.00 34.56 2.08
6040 7546 1.982395 CGCCCCGGCCATAGAGATA 60.982 63.158 2.24 0.00 37.98 1.98
6041 7547 3.314331 CGCCCCGGCCATAGAGAT 61.314 66.667 2.24 0.00 37.98 2.75
6192 7701 1.888512 GGAGCCTCAAATTGAAGCACA 59.111 47.619 17.59 0.00 36.33 4.57
6221 7730 1.683011 CGGGCATCTTTGGAGGAACAT 60.683 52.381 0.00 0.00 0.00 2.71
6223 7732 0.322546 ACGGGCATCTTTGGAGGAAC 60.323 55.000 0.00 0.00 0.00 3.62
6317 7826 1.741770 CGCCCCGTGGAAGAAGAAG 60.742 63.158 0.00 0.00 0.00 2.85
6318 7827 2.345991 CGCCCCGTGGAAGAAGAA 59.654 61.111 0.00 0.00 0.00 2.52
6319 7828 3.702048 CCGCCCCGTGGAAGAAGA 61.702 66.667 0.00 0.00 34.74 2.87
6360 7869 0.465460 TGGTCAACCTGTTGTGGAGC 60.465 55.000 9.65 1.97 44.27 4.70
6402 7911 2.438021 AGTAGTTTGTGGCTGAAGTGGA 59.562 45.455 0.00 0.00 0.00 4.02
6591 8102 4.202357 TGGAAAAGCTAAGCACAAGAGAGA 60.202 41.667 0.00 0.00 0.00 3.10
6648 8159 0.764369 TGCGGGGAAGATAGAGGCAT 60.764 55.000 0.00 0.00 0.00 4.40
6650 8161 0.036858 GATGCGGGGAAGATAGAGGC 60.037 60.000 0.00 0.00 0.00 4.70
6651 8162 0.244994 CGATGCGGGGAAGATAGAGG 59.755 60.000 0.00 0.00 0.00 3.69
6652 8163 0.244994 CCGATGCGGGGAAGATAGAG 59.755 60.000 0.00 0.00 44.15 2.43
6693 8223 4.664536 ACTAACCCTGTAAAACCCCTGTAA 59.335 41.667 0.00 0.00 0.00 2.41
6694 8224 4.241981 ACTAACCCTGTAAAACCCCTGTA 58.758 43.478 0.00 0.00 0.00 2.74
6695 8225 3.058341 ACTAACCCTGTAAAACCCCTGT 58.942 45.455 0.00 0.00 0.00 4.00
6696 8226 3.801307 ACTAACCCTGTAAAACCCCTG 57.199 47.619 0.00 0.00 0.00 4.45
6697 8227 4.819702 AAACTAACCCTGTAAAACCCCT 57.180 40.909 0.00 0.00 0.00 4.79
6698 8228 6.306199 TCTAAAACTAACCCTGTAAAACCCC 58.694 40.000 0.00 0.00 0.00 4.95
6699 8229 9.170734 CTATCTAAAACTAACCCTGTAAAACCC 57.829 37.037 0.00 0.00 0.00 4.11
6700 8230 9.948964 TCTATCTAAAACTAACCCTGTAAAACC 57.051 33.333 0.00 0.00 0.00 3.27
6832 8362 5.575019 GTTGTGGACACGTTTTATGTTCTT 58.425 37.500 0.00 0.00 0.00 2.52
6872 8402 2.722201 CCCGGCTCTGGGTGTACTC 61.722 68.421 5.59 0.00 44.76 2.59
6944 8474 7.066307 TGCTACAGATTGAAGCATAAGGATA 57.934 36.000 0.00 0.00 41.15 2.59
7030 8560 3.916989 AGGTGAAAGGTAAAGTGGGAGAT 59.083 43.478 0.00 0.00 0.00 2.75
7038 8568 6.447162 GGTGAATGAAAGGTGAAAGGTAAAG 58.553 40.000 0.00 0.00 0.00 1.85
7039 8569 5.303333 GGGTGAATGAAAGGTGAAAGGTAAA 59.697 40.000 0.00 0.00 0.00 2.01
7040 8570 4.830600 GGGTGAATGAAAGGTGAAAGGTAA 59.169 41.667 0.00 0.00 0.00 2.85
7041 8571 4.403734 GGGTGAATGAAAGGTGAAAGGTA 58.596 43.478 0.00 0.00 0.00 3.08
7042 8572 3.230976 GGGTGAATGAAAGGTGAAAGGT 58.769 45.455 0.00 0.00 0.00 3.50
7043 8573 2.562738 GGGGTGAATGAAAGGTGAAAGG 59.437 50.000 0.00 0.00 0.00 3.11
7044 8574 2.562738 GGGGGTGAATGAAAGGTGAAAG 59.437 50.000 0.00 0.00 0.00 2.62
7045 8575 2.178984 AGGGGGTGAATGAAAGGTGAAA 59.821 45.455 0.00 0.00 0.00 2.69
7046 8576 1.786441 AGGGGGTGAATGAAAGGTGAA 59.214 47.619 0.00 0.00 0.00 3.18
7047 8577 1.455822 AGGGGGTGAATGAAAGGTGA 58.544 50.000 0.00 0.00 0.00 4.02
7048 8578 2.309136 AAGGGGGTGAATGAAAGGTG 57.691 50.000 0.00 0.00 0.00 4.00
7049 8579 3.116746 AGAAAAGGGGGTGAATGAAAGGT 60.117 43.478 0.00 0.00 0.00 3.50
7050 8580 3.510459 AGAAAAGGGGGTGAATGAAAGG 58.490 45.455 0.00 0.00 0.00 3.11
7051 8581 4.835056 AGAAGAAAAGGGGGTGAATGAAAG 59.165 41.667 0.00 0.00 0.00 2.62
7052 8582 4.814967 AGAAGAAAAGGGGGTGAATGAAA 58.185 39.130 0.00 0.00 0.00 2.69
7053 8583 4.106341 AGAGAAGAAAAGGGGGTGAATGAA 59.894 41.667 0.00 0.00 0.00 2.57
7054 8584 3.657727 AGAGAAGAAAAGGGGGTGAATGA 59.342 43.478 0.00 0.00 0.00 2.57
7055 8585 4.013050 GAGAGAAGAAAAGGGGGTGAATG 58.987 47.826 0.00 0.00 0.00 2.67
7056 8586 3.010696 GGAGAGAAGAAAAGGGGGTGAAT 59.989 47.826 0.00 0.00 0.00 2.57
7057 8587 2.375509 GGAGAGAAGAAAAGGGGGTGAA 59.624 50.000 0.00 0.00 0.00 3.18
7058 8588 1.985895 GGAGAGAAGAAAAGGGGGTGA 59.014 52.381 0.00 0.00 0.00 4.02
7059 8589 1.004862 GGGAGAGAAGAAAAGGGGGTG 59.995 57.143 0.00 0.00 0.00 4.61
7060 8590 1.132036 AGGGAGAGAAGAAAAGGGGGT 60.132 52.381 0.00 0.00 0.00 4.95
7061 8591 1.562008 GAGGGAGAGAAGAAAAGGGGG 59.438 57.143 0.00 0.00 0.00 5.40
7062 8592 2.503765 GAGAGGGAGAGAAGAAAAGGGG 59.496 54.545 0.00 0.00 0.00 4.79
7063 8593 3.449918 AGAGAGGGAGAGAAGAAAAGGG 58.550 50.000 0.00 0.00 0.00 3.95
7064 8594 4.352893 AGAGAGAGGGAGAGAAGAAAAGG 58.647 47.826 0.00 0.00 0.00 3.11
7065 8595 6.165577 CAAAGAGAGAGGGAGAGAAGAAAAG 58.834 44.000 0.00 0.00 0.00 2.27
7066 8596 5.012561 CCAAAGAGAGAGGGAGAGAAGAAAA 59.987 44.000 0.00 0.00 0.00 2.29
7067 8597 4.530161 CCAAAGAGAGAGGGAGAGAAGAAA 59.470 45.833 0.00 0.00 0.00 2.52
7068 8598 4.093011 CCAAAGAGAGAGGGAGAGAAGAA 58.907 47.826 0.00 0.00 0.00 2.52
7069 8599 3.335183 TCCAAAGAGAGAGGGAGAGAAGA 59.665 47.826 0.00 0.00 0.00 2.87
7070 8600 3.707316 TCCAAAGAGAGAGGGAGAGAAG 58.293 50.000 0.00 0.00 0.00 2.85
7071 8601 3.835478 TCCAAAGAGAGAGGGAGAGAA 57.165 47.619 0.00 0.00 0.00 2.87
7083 8613 2.789409 ATTCCCCGTTCTCCAAAGAG 57.211 50.000 0.00 0.00 41.93 2.85
7084 8614 3.178865 ACTATTCCCCGTTCTCCAAAGA 58.821 45.455 0.00 0.00 0.00 2.52
7085 8615 3.629142 ACTATTCCCCGTTCTCCAAAG 57.371 47.619 0.00 0.00 0.00 2.77
7086 8616 3.560453 CCAACTATTCCCCGTTCTCCAAA 60.560 47.826 0.00 0.00 0.00 3.28
7087 8617 2.026636 CCAACTATTCCCCGTTCTCCAA 60.027 50.000 0.00 0.00 0.00 3.53
7088 8618 1.557832 CCAACTATTCCCCGTTCTCCA 59.442 52.381 0.00 0.00 0.00 3.86
7089 8619 1.558294 ACCAACTATTCCCCGTTCTCC 59.442 52.381 0.00 0.00 0.00 3.71
7090 8620 3.345508 AACCAACTATTCCCCGTTCTC 57.654 47.619 0.00 0.00 0.00 2.87
7091 8621 3.801307 AAACCAACTATTCCCCGTTCT 57.199 42.857 0.00 0.00 0.00 3.01
7092 8622 5.241285 TGTTAAAACCAACTATTCCCCGTTC 59.759 40.000 0.00 0.00 0.00 3.95
7093 8623 5.139001 TGTTAAAACCAACTATTCCCCGTT 58.861 37.500 0.00 0.00 0.00 4.44
7094 8624 4.727677 TGTTAAAACCAACTATTCCCCGT 58.272 39.130 0.00 0.00 0.00 5.28
7095 8625 4.157105 CCTGTTAAAACCAACTATTCCCCG 59.843 45.833 0.00 0.00 0.00 5.73
7096 8626 4.081862 GCCTGTTAAAACCAACTATTCCCC 60.082 45.833 0.00 0.00 0.00 4.81
7097 8627 4.380128 CGCCTGTTAAAACCAACTATTCCC 60.380 45.833 0.00 0.00 0.00 3.97
7098 8628 4.216902 ACGCCTGTTAAAACCAACTATTCC 59.783 41.667 0.00 0.00 0.00 3.01
7099 8629 5.366829 ACGCCTGTTAAAACCAACTATTC 57.633 39.130 0.00 0.00 0.00 1.75
7100 8630 4.083696 CGACGCCTGTTAAAACCAACTATT 60.084 41.667 0.00 0.00 0.00 1.73
7101 8631 3.434299 CGACGCCTGTTAAAACCAACTAT 59.566 43.478 0.00 0.00 0.00 2.12
7102 8632 2.801679 CGACGCCTGTTAAAACCAACTA 59.198 45.455 0.00 0.00 0.00 2.24
7103 8633 1.600485 CGACGCCTGTTAAAACCAACT 59.400 47.619 0.00 0.00 0.00 3.16
7104 8634 1.331447 ACGACGCCTGTTAAAACCAAC 59.669 47.619 0.00 0.00 0.00 3.77
7105 8635 1.598601 GACGACGCCTGTTAAAACCAA 59.401 47.619 0.00 0.00 0.00 3.67
7106 8636 1.219646 GACGACGCCTGTTAAAACCA 58.780 50.000 0.00 0.00 0.00 3.67
7107 8637 0.514255 GGACGACGCCTGTTAAAACC 59.486 55.000 0.00 0.00 0.00 3.27
7108 8638 0.162294 CGGACGACGCCTGTTAAAAC 59.838 55.000 0.00 0.00 34.82 2.43
7109 8639 2.519826 CGGACGACGCCTGTTAAAA 58.480 52.632 0.00 0.00 34.82 1.52
7110 8640 4.248402 CGGACGACGCCTGTTAAA 57.752 55.556 0.00 0.00 34.82 1.52
7398 12618 3.292492 AGGATTTGCATGCAGATCTGA 57.708 42.857 36.13 15.85 37.60 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.