Multiple sequence alignment - TraesCS4A01G468800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G468800 chr4A 100.000 3547 0 0 1 3547 730787910 730784364 0.000000e+00 6551
1 TraesCS4A01G468800 chr4A 91.892 2183 142 18 901 3060 730279704 730281874 0.000000e+00 3018
2 TraesCS4A01G468800 chr4A 91.839 2181 140 20 901 3055 730886589 730888757 0.000000e+00 3007
3 TraesCS4A01G468800 chr4A 96.466 1443 33 5 1 1443 730200047 730198623 0.000000e+00 2366
4 TraesCS4A01G468800 chr4A 89.840 1624 139 10 1443 3055 730193841 730192233 0.000000e+00 2061
5 TraesCS4A01G468800 chr4A 90.394 1218 86 8 1559 2748 728851006 728852220 0.000000e+00 1572
6 TraesCS4A01G468800 chr4A 93.065 447 28 3 1059 1503 728850474 728850919 0.000000e+00 651
7 TraesCS4A01G468800 chr4A 97.436 117 3 0 853 969 728850358 728850474 2.160000e-47 200
8 TraesCS4A01G468800 chr4A 94.340 106 6 0 398 503 728850139 728850244 2.830000e-36 163
9 TraesCS4A01G468800 chr4A 90.426 94 2 1 772 858 728850240 728850333 2.240000e-22 117
10 TraesCS4A01G468800 chr7A 90.192 2131 161 20 953 3051 9411275 9413389 0.000000e+00 2734
11 TraesCS4A01G468800 chr7A 90.323 279 25 2 499 775 696328537 696328259 7.240000e-97 364
12 TraesCS4A01G468800 chr7A 79.116 498 88 11 3053 3547 404390620 404390136 2.640000e-86 329
13 TraesCS4A01G468800 chr7A 76.065 493 109 9 3053 3541 578907060 578907547 7.600000e-62 248
14 TraesCS4A01G468800 chr7D 96.072 1604 55 4 1455 3055 8982152 8983750 0.000000e+00 2606
15 TraesCS4A01G468800 chr7D 95.608 1480 60 3 1580 3055 8988487 8989965 0.000000e+00 2368
16 TraesCS4A01G468800 chr7D 91.366 1135 81 8 1605 2726 9378353 9379483 0.000000e+00 1537
17 TraesCS4A01G468800 chr7D 93.821 615 28 5 953 1561 9377737 9378347 0.000000e+00 917
18 TraesCS4A01G468800 chr7D 93.008 615 32 3 853 1460 8981052 8981662 0.000000e+00 887
19 TraesCS4A01G468800 chr7D 93.952 463 22 3 1119 1580 8985509 8985966 0.000000e+00 695
20 TraesCS4A01G468800 chr7D 86.076 316 37 7 2752 3065 9379482 9379792 2.040000e-87 333
21 TraesCS4A01G468800 chr7D 89.011 273 23 7 133 401 270219184 270219453 7.340000e-87 331
22 TraesCS4A01G468800 chr5D 85.373 1005 129 15 1609 2602 445719882 445718885 0.000000e+00 1026
23 TraesCS4A01G468800 chr5D 88.285 589 50 10 866 1444 445720774 445720195 0.000000e+00 688
24 TraesCS4A01G468800 chr5D 90.975 277 23 2 495 770 175979652 175979927 4.320000e-99 372
25 TraesCS4A01G468800 chr5D 75.703 498 114 7 3053 3547 157113259 157113752 3.540000e-60 243
26 TraesCS4A01G468800 chr5D 95.775 142 6 0 1 142 505408693 505408834 2.750000e-56 230
27 TraesCS4A01G468800 chr5A 87.011 562 48 11 901 1443 563376511 563375956 8.420000e-171 610
28 TraesCS4A01G468800 chr5A 83.964 449 71 1 996 1443 563359130 563358682 2.530000e-116 429
29 TraesCS4A01G468800 chr5A 79.960 499 89 11 3053 3547 99318756 99319247 1.210000e-94 357
30 TraesCS4A01G468800 chr6B 94.297 263 15 0 501 763 385557908 385557646 1.530000e-108 403
31 TraesCS4A01G468800 chr6B 95.804 143 5 1 1 142 719746629 719746487 2.750000e-56 230
32 TraesCS4A01G468800 chr6B 95.804 143 5 1 1 142 719757161 719757019 2.750000e-56 230
33 TraesCS4A01G468800 chr6B 95.105 143 6 1 1 142 719755831 719755689 1.280000e-54 224
34 TraesCS4A01G468800 chrUn 95.652 253 6 2 901 1152 475916861 475917109 5.520000e-108 401
35 TraesCS4A01G468800 chrUn 80.000 500 83 16 3053 3546 289131895 289132383 1.570000e-93 353
36 TraesCS4A01G468800 chrUn 80.000 500 83 16 3053 3546 303443558 303443070 1.570000e-93 353
37 TraesCS4A01G468800 chrUn 88.433 268 28 3 133 397 67960908 67960641 1.590000e-83 320
38 TraesCS4A01G468800 chr1D 81.212 495 90 3 3053 3546 87410229 87410721 2.570000e-106 396
39 TraesCS4A01G468800 chr1D 79.215 433 82 7 1017 1443 236093517 236093087 9.630000e-76 294
40 TraesCS4A01G468800 chr1D 94.444 144 6 2 1 142 487360635 487360778 1.660000e-53 220
41 TraesCS4A01G468800 chr1B 81.250 496 87 6 3053 3546 443011889 443012380 2.570000e-106 396
42 TraesCS4A01G468800 chr1B 80.000 435 75 10 1017 1443 341380161 341379731 9.560000e-81 311
43 TraesCS4A01G468800 chr1B 78.226 496 91 12 3053 3544 302390155 302390637 5.750000e-78 302
44 TraesCS4A01G468800 chr6A 92.647 272 18 1 501 770 234192629 234192358 1.190000e-104 390
45 TraesCS4A01G468800 chr6A 86.424 302 39 2 2751 3051 604452116 604452416 2.640000e-86 329
46 TraesCS4A01G468800 chr5B 91.367 278 22 2 501 776 684919339 684919062 2.580000e-101 379
47 TraesCS4A01G468800 chr5B 91.481 270 23 0 501 770 320411184 320410915 4.320000e-99 372
48 TraesCS4A01G468800 chr5B 88.390 267 27 4 133 397 51299426 51299690 5.710000e-83 318
49 TraesCS4A01G468800 chr5B 88.846 260 25 4 140 397 51474819 51475076 2.060000e-82 316
50 TraesCS4A01G468800 chr2A 80.684 497 86 8 3053 3546 729632439 729631950 9.290000e-101 377
51 TraesCS4A01G468800 chr6D 91.336 277 15 4 501 770 143496129 143495855 1.560000e-98 370
52 TraesCS4A01G468800 chr6D 88.764 267 25 4 135 397 293608432 293608697 4.420000e-84 322
53 TraesCS4A01G468800 chr1A 91.176 272 22 2 501 770 53021991 53022262 5.590000e-98 368
54 TraesCS4A01G468800 chr1A 81.888 392 66 5 3053 3443 272622654 272622267 3.410000e-85 326
55 TraesCS4A01G468800 chr1A 78.753 433 84 8 1017 1443 309789817 309790247 2.080000e-72 283
56 TraesCS4A01G468800 chr1A 91.667 72 5 1 3477 3547 364785673 364785744 8.100000e-17 99
57 TraesCS4A01G468800 chr4B 80.202 495 90 3 3053 3547 50590132 50589646 7.240000e-97 364
58 TraesCS4A01G468800 chr3D 79.276 497 96 6 3053 3547 336847572 336847081 1.220000e-89 340
59 TraesCS4A01G468800 chr3D 94.444 144 6 2 1 142 349979648 349979505 1.660000e-53 220
60 TraesCS4A01G468800 chr3D 94.366 142 8 0 1 142 365522773 365522632 5.960000e-53 219
61 TraesCS4A01G468800 chr4D 88.848 269 25 5 133 397 172742118 172741851 3.410000e-85 326
62 TraesCS4A01G468800 chr4D 76.754 499 108 8 3053 3547 328267169 328266675 4.510000e-69 272
63 TraesCS4A01G468800 chr4D 76.400 500 108 10 3053 3547 293273422 293272928 9.770000e-66 261
64 TraesCS4A01G468800 chr2B 88.764 267 27 3 134 397 155113694 155113428 1.230000e-84 324
65 TraesCS4A01G468800 chr2B 88.015 267 29 3 133 397 780208749 780209014 2.660000e-81 313
66 TraesCS4A01G468800 chr7B 78.340 494 96 11 3059 3547 236199514 236199027 3.440000e-80 309
67 TraesCS4A01G468800 chr7B 95.070 142 7 0 1 142 748564715 748564856 1.280000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G468800 chr4A 730784364 730787910 3546 True 6551.0 6551 100.0000 1 3547 1 chr4A.!!$R3 3546
1 TraesCS4A01G468800 chr4A 730279704 730281874 2170 False 3018.0 3018 91.8920 901 3060 1 chr4A.!!$F1 2159
2 TraesCS4A01G468800 chr4A 730886589 730888757 2168 False 3007.0 3007 91.8390 901 3055 1 chr4A.!!$F2 2154
3 TraesCS4A01G468800 chr4A 730198623 730200047 1424 True 2366.0 2366 96.4660 1 1443 1 chr4A.!!$R2 1442
4 TraesCS4A01G468800 chr4A 730192233 730193841 1608 True 2061.0 2061 89.8400 1443 3055 1 chr4A.!!$R1 1612
5 TraesCS4A01G468800 chr4A 728850139 728852220 2081 False 540.6 1572 93.1322 398 2748 5 chr4A.!!$F3 2350
6 TraesCS4A01G468800 chr7A 9411275 9413389 2114 False 2734.0 2734 90.1920 953 3051 1 chr7A.!!$F1 2098
7 TraesCS4A01G468800 chr7D 8981052 8989965 8913 False 1639.0 2606 94.6600 853 3055 4 chr7D.!!$F2 2202
8 TraesCS4A01G468800 chr7D 9377737 9379792 2055 False 929.0 1537 90.4210 953 3065 3 chr7D.!!$F3 2112
9 TraesCS4A01G468800 chr5D 445718885 445720774 1889 True 857.0 1026 86.8290 866 2602 2 chr5D.!!$R1 1736
10 TraesCS4A01G468800 chr5A 563375956 563376511 555 True 610.0 610 87.0110 901 1443 1 chr5A.!!$R2 542
11 TraesCS4A01G468800 chr6B 719755689 719757161 1472 True 227.0 230 95.4545 1 142 2 chr6B.!!$R3 141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 800 1.658409 GTTGCTGTTTGCCGAGTGC 60.658 57.895 0.00 0.0 42.0 4.4 F
1388 1461 0.386113 GCCTCGACGAGCTCCTATTT 59.614 55.000 19.55 0.0 0.0 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 2727 1.338484 ACATCATCGTTCAGCAGCAGT 60.338 47.619 0.00 0.00 0.00 4.40 R
3057 10672 0.250989 TAAAGAGCCACCCGGGTTTG 60.251 55.000 27.83 19.95 45.28 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 174 4.530857 GTCATGGAGGCCGACCGG 62.531 72.222 15.28 0.00 42.76 5.28
220 222 1.760613 CGATGGTGGCTAGGGTTTAGA 59.239 52.381 0.00 0.00 0.00 2.10
230 232 4.343239 GGCTAGGGTTTAGAATCGGTTAGA 59.657 45.833 0.00 0.00 0.00 2.10
275 279 7.365652 GGAGAGAGGGATTTGGTGAAATAGTTA 60.366 40.741 0.00 0.00 31.58 2.24
514 521 2.502130 TCGGTTGAGGGCATGTACAATA 59.498 45.455 0.00 0.00 0.00 1.90
632 639 6.315642 ACAAGTGATGATCTCTTAGCACAATG 59.684 38.462 9.17 3.66 30.06 2.82
793 800 1.658409 GTTGCTGTTTGCCGAGTGC 60.658 57.895 0.00 0.00 42.00 4.40
899 951 5.106038 TGTTTGGTACGGACATAGTCACTAG 60.106 44.000 0.00 0.00 33.68 2.57
1388 1461 0.386113 GCCTCGACGAGCTCCTATTT 59.614 55.000 19.55 0.00 0.00 1.40
1505 2123 6.436843 ACAGTCGAGAGTTTTCACAAAAAT 57.563 33.333 0.00 0.00 36.77 1.82
1637 2385 2.661866 GTGACACGGCTCGCTTGT 60.662 61.111 0.00 0.00 0.00 3.16
1676 2424 3.020984 TGTGAGGATACAGCACACGATA 58.979 45.455 0.00 0.00 45.32 2.92
1915 9076 1.243342 CGCTTCTTCATTGGGTGGCA 61.243 55.000 0.00 0.00 0.00 4.92
2214 9380 3.533720 CGAAGCGGGAGGTGGATA 58.466 61.111 0.00 0.00 42.46 2.59
2297 9498 3.506096 CGCGGCTACCTCGTCTCA 61.506 66.667 0.00 0.00 0.00 3.27
2570 10173 1.590238 GCCATCTGAGTTGAATCGTCG 59.410 52.381 0.00 0.00 0.00 5.12
2724 10337 4.284178 CCATGATGACCTTTCCCTCAAAT 58.716 43.478 0.00 0.00 0.00 2.32
2725 10338 4.713321 CCATGATGACCTTTCCCTCAAATT 59.287 41.667 0.00 0.00 0.00 1.82
2726 10339 5.188359 CCATGATGACCTTTCCCTCAAATTT 59.812 40.000 0.00 0.00 0.00 1.82
2786 10399 2.664568 GGCCGGCGAATCTTTTAAAAAC 59.335 45.455 22.54 0.00 0.00 2.43
2798 10411 1.249407 TTAAAAACATCCGCCCGCTT 58.751 45.000 0.00 0.00 0.00 4.68
3055 10670 0.949588 TTGTTGCCGTCGCCGATTTA 60.950 50.000 0.00 0.00 35.63 1.40
3056 10671 0.741574 TGTTGCCGTCGCCGATTTAT 60.742 50.000 0.00 0.00 35.63 1.40
3057 10672 0.042448 GTTGCCGTCGCCGATTTATC 60.042 55.000 0.00 0.00 35.63 1.75
3059 10674 0.460459 TGCCGTCGCCGATTTATCAA 60.460 50.000 0.00 0.00 35.63 2.57
3060 10675 0.653636 GCCGTCGCCGATTTATCAAA 59.346 50.000 0.00 0.00 35.63 2.69
3063 10678 1.004292 CGTCGCCGATTTATCAAACCC 60.004 52.381 0.00 0.00 35.63 4.11
3064 10679 1.004292 GTCGCCGATTTATCAAACCCG 60.004 52.381 0.00 0.00 0.00 5.28
3065 10680 0.306533 CGCCGATTTATCAAACCCGG 59.693 55.000 0.00 0.00 40.63 5.73
3066 10681 0.666374 GCCGATTTATCAAACCCGGG 59.334 55.000 22.25 22.25 39.13 5.73
3067 10682 2.020181 GCCGATTTATCAAACCCGGGT 61.020 52.381 24.16 24.16 39.13 5.28
3068 10683 1.673920 CCGATTTATCAAACCCGGGTG 59.326 52.381 31.05 16.91 36.73 4.61
3069 10684 1.673920 CGATTTATCAAACCCGGGTGG 59.326 52.381 31.05 23.11 41.37 4.61
3070 10685 1.407618 GATTTATCAAACCCGGGTGGC 59.592 52.381 31.05 4.87 37.83 5.01
3071 10686 0.406361 TTTATCAAACCCGGGTGGCT 59.594 50.000 31.05 16.89 37.83 4.75
3072 10687 0.034863 TTATCAAACCCGGGTGGCTC 60.035 55.000 31.05 0.00 37.83 4.70
3073 10688 0.912487 TATCAAACCCGGGTGGCTCT 60.912 55.000 31.05 8.26 37.83 4.09
3074 10689 1.789576 ATCAAACCCGGGTGGCTCTT 61.790 55.000 31.05 15.22 37.83 2.85
3075 10690 1.530655 CAAACCCGGGTGGCTCTTT 60.531 57.895 31.05 14.35 37.83 2.52
3076 10691 0.250989 CAAACCCGGGTGGCTCTTTA 60.251 55.000 31.05 0.00 37.83 1.85
3077 10692 0.251033 AAACCCGGGTGGCTCTTTAC 60.251 55.000 31.05 0.00 37.83 2.01
3078 10693 1.420532 AACCCGGGTGGCTCTTTACA 61.421 55.000 31.05 0.00 37.83 2.41
3079 10694 1.205460 ACCCGGGTGGCTCTTTACAT 61.205 55.000 29.69 0.00 37.83 2.29
3080 10695 0.034477 CCCGGGTGGCTCTTTACATT 60.034 55.000 14.18 0.00 0.00 2.71
3081 10696 1.615919 CCCGGGTGGCTCTTTACATTT 60.616 52.381 14.18 0.00 0.00 2.32
3082 10697 1.743394 CCGGGTGGCTCTTTACATTTC 59.257 52.381 0.00 0.00 0.00 2.17
3083 10698 1.743394 CGGGTGGCTCTTTACATTTCC 59.257 52.381 0.00 0.00 0.00 3.13
3084 10699 2.802719 GGGTGGCTCTTTACATTTCCA 58.197 47.619 0.00 0.00 0.00 3.53
3085 10700 3.161866 GGGTGGCTCTTTACATTTCCAA 58.838 45.455 0.00 0.00 0.00 3.53
3086 10701 3.576550 GGGTGGCTCTTTACATTTCCAAA 59.423 43.478 0.00 0.00 0.00 3.28
3087 10702 4.222810 GGGTGGCTCTTTACATTTCCAAAT 59.777 41.667 0.00 0.00 0.00 2.32
3088 10703 5.420739 GGGTGGCTCTTTACATTTCCAAATA 59.579 40.000 0.00 0.00 0.00 1.40
3089 10704 6.098266 GGGTGGCTCTTTACATTTCCAAATAT 59.902 38.462 0.00 0.00 0.00 1.28
3090 10705 7.364673 GGGTGGCTCTTTACATTTCCAAATATT 60.365 37.037 0.00 0.00 0.00 1.28
3091 10706 7.706607 GGTGGCTCTTTACATTTCCAAATATTC 59.293 37.037 0.00 0.00 0.00 1.75
3092 10707 8.470002 GTGGCTCTTTACATTTCCAAATATTCT 58.530 33.333 0.00 0.00 0.00 2.40
3093 10708 8.686334 TGGCTCTTTACATTTCCAAATATTCTC 58.314 33.333 0.00 0.00 0.00 2.87
3094 10709 8.686334 GGCTCTTTACATTTCCAAATATTCTCA 58.314 33.333 0.00 0.00 0.00 3.27
3095 10710 9.727627 GCTCTTTACATTTCCAAATATTCTCAG 57.272 33.333 0.00 0.00 0.00 3.35
3106 10721 8.567285 TCCAAATATTCTCAGAAAAAGAGACC 57.433 34.615 0.00 0.00 41.53 3.85
3107 10722 8.163408 TCCAAATATTCTCAGAAAAAGAGACCA 58.837 33.333 0.00 0.00 41.53 4.02
3108 10723 8.964772 CCAAATATTCTCAGAAAAAGAGACCAT 58.035 33.333 0.00 0.00 41.53 3.55
3110 10725 9.972106 AAATATTCTCAGAAAAAGAGACCATCT 57.028 29.630 0.00 0.00 41.53 2.90
3127 10742 9.225436 GAGACCATCTTAAGATCCAAAATATCC 57.775 37.037 15.24 0.00 31.21 2.59
3128 10743 8.727149 AGACCATCTTAAGATCCAAAATATCCA 58.273 33.333 15.24 0.00 31.21 3.41
3129 10744 9.354673 GACCATCTTAAGATCCAAAATATCCAA 57.645 33.333 15.24 0.00 31.21 3.53
3130 10745 9.136323 ACCATCTTAAGATCCAAAATATCCAAC 57.864 33.333 15.24 0.00 31.21 3.77
3131 10746 9.359653 CCATCTTAAGATCCAAAATATCCAACT 57.640 33.333 15.24 0.00 31.21 3.16
3133 10748 8.225603 TCTTAAGATCCAAAATATCCAACTGC 57.774 34.615 0.00 0.00 0.00 4.40
3134 10749 8.055181 TCTTAAGATCCAAAATATCCAACTGCT 58.945 33.333 0.00 0.00 0.00 4.24
3135 10750 8.593945 TTAAGATCCAAAATATCCAACTGCTT 57.406 30.769 0.00 0.00 0.00 3.91
3136 10751 9.693739 TTAAGATCCAAAATATCCAACTGCTTA 57.306 29.630 0.00 0.00 0.00 3.09
3137 10752 8.773033 AAGATCCAAAATATCCAACTGCTTAT 57.227 30.769 0.00 0.00 0.00 1.73
3138 10753 8.773033 AGATCCAAAATATCCAACTGCTTATT 57.227 30.769 0.00 0.00 0.00 1.40
3139 10754 9.866655 AGATCCAAAATATCCAACTGCTTATTA 57.133 29.630 0.00 0.00 0.00 0.98
3140 10755 9.899226 GATCCAAAATATCCAACTGCTTATTAC 57.101 33.333 0.00 0.00 0.00 1.89
3141 10756 8.815565 TCCAAAATATCCAACTGCTTATTACA 57.184 30.769 0.00 0.00 0.00 2.41
3142 10757 8.682710 TCCAAAATATCCAACTGCTTATTACAC 58.317 33.333 0.00 0.00 0.00 2.90
3143 10758 8.465999 CCAAAATATCCAACTGCTTATTACACA 58.534 33.333 0.00 0.00 0.00 3.72
3144 10759 9.853555 CAAAATATCCAACTGCTTATTACACAA 57.146 29.630 0.00 0.00 0.00 3.33
3146 10761 7.807977 ATATCCAACTGCTTATTACACAAGG 57.192 36.000 0.00 0.00 0.00 3.61
3147 10762 4.980573 TCCAACTGCTTATTACACAAGGT 58.019 39.130 0.00 0.00 0.00 3.50
3148 10763 6.116711 TCCAACTGCTTATTACACAAGGTA 57.883 37.500 0.00 0.00 0.00 3.08
3149 10764 6.535540 TCCAACTGCTTATTACACAAGGTAA 58.464 36.000 0.00 0.00 45.55 2.85
3150 10765 6.428771 TCCAACTGCTTATTACACAAGGTAAC 59.571 38.462 0.00 0.00 44.36 2.50
3151 10766 6.349033 CCAACTGCTTATTACACAAGGTAACC 60.349 42.308 0.00 0.00 44.36 2.85
3152 10767 5.871834 ACTGCTTATTACACAAGGTAACCA 58.128 37.500 0.00 0.00 44.36 3.67
3153 10768 6.300703 ACTGCTTATTACACAAGGTAACCAA 58.699 36.000 0.00 0.00 44.36 3.67
3154 10769 6.773685 ACTGCTTATTACACAAGGTAACCAAA 59.226 34.615 0.00 0.00 44.36 3.28
3155 10770 7.040686 ACTGCTTATTACACAAGGTAACCAAAG 60.041 37.037 0.00 0.00 44.36 2.77
3156 10771 6.773685 TGCTTATTACACAAGGTAACCAAAGT 59.226 34.615 0.00 0.00 44.36 2.66
3157 10772 7.937942 TGCTTATTACACAAGGTAACCAAAGTA 59.062 33.333 0.00 0.00 44.36 2.24
3158 10773 8.953313 GCTTATTACACAAGGTAACCAAAGTAT 58.047 33.333 0.00 0.00 44.36 2.12
3161 10776 8.927675 ATTACACAAGGTAACCAAAGTATTCA 57.072 30.769 0.00 0.00 44.36 2.57
3162 10777 8.927675 TTACACAAGGTAACCAAAGTATTCAT 57.072 30.769 0.00 0.00 37.05 2.57
3165 10780 8.956426 ACACAAGGTAACCAAAGTATTCATATG 58.044 33.333 0.00 0.00 37.17 1.78
3166 10781 9.173021 CACAAGGTAACCAAAGTATTCATATGA 57.827 33.333 0.00 0.00 37.17 2.15
3167 10782 9.920946 ACAAGGTAACCAAAGTATTCATATGAT 57.079 29.630 6.17 0.00 37.17 2.45
3174 10789 9.479549 AACCAAAGTATTCATATGATTGAGGTT 57.520 29.630 14.72 14.79 0.00 3.50
3175 10790 9.479549 ACCAAAGTATTCATATGATTGAGGTTT 57.520 29.630 14.72 5.45 0.00 3.27
3176 10791 9.956720 CCAAAGTATTCATATGATTGAGGTTTC 57.043 33.333 14.72 0.00 0.00 2.78
3177 10792 9.956720 CAAAGTATTCATATGATTGAGGTTTCC 57.043 33.333 6.17 0.00 0.00 3.13
3178 10793 9.699410 AAAGTATTCATATGATTGAGGTTTCCA 57.301 29.630 6.17 0.00 0.00 3.53
3179 10794 8.682936 AGTATTCATATGATTGAGGTTTCCAC 57.317 34.615 6.17 0.00 0.00 4.02
3180 10795 8.497745 AGTATTCATATGATTGAGGTTTCCACT 58.502 33.333 6.17 0.00 0.00 4.00
3181 10796 7.578310 ATTCATATGATTGAGGTTTCCACTG 57.422 36.000 6.17 0.00 0.00 3.66
3182 10797 6.312141 TCATATGATTGAGGTTTCCACTGA 57.688 37.500 0.00 0.00 0.00 3.41
3183 10798 6.903516 TCATATGATTGAGGTTTCCACTGAT 58.096 36.000 0.00 0.00 0.00 2.90
3184 10799 8.033178 TCATATGATTGAGGTTTCCACTGATA 57.967 34.615 0.00 0.00 0.00 2.15
3185 10800 8.663167 TCATATGATTGAGGTTTCCACTGATAT 58.337 33.333 0.00 0.00 0.00 1.63
3186 10801 9.948964 CATATGATTGAGGTTTCCACTGATATA 57.051 33.333 0.00 0.00 0.00 0.86
3189 10804 9.872684 ATGATTGAGGTTTCCACTGATATATTT 57.127 29.630 0.00 0.00 0.00 1.40
3195 10810 9.495572 GAGGTTTCCACTGATATATTTAAGAGG 57.504 37.037 0.00 0.00 0.00 3.69
3196 10811 9.004231 AGGTTTCCACTGATATATTTAAGAGGT 57.996 33.333 0.00 0.00 0.00 3.85
3197 10812 9.628500 GGTTTCCACTGATATATTTAAGAGGTT 57.372 33.333 0.00 0.00 0.00 3.50
3271 10886 8.499288 TTTTTAATATTTGAACCCCCTCTTGT 57.501 30.769 0.00 0.00 0.00 3.16
3272 10887 7.475137 TTTAATATTTGAACCCCCTCTTGTG 57.525 36.000 0.00 0.00 0.00 3.33
3273 10888 4.675063 ATATTTGAACCCCCTCTTGTGT 57.325 40.909 0.00 0.00 0.00 3.72
3274 10889 5.789574 ATATTTGAACCCCCTCTTGTGTA 57.210 39.130 0.00 0.00 0.00 2.90
3275 10890 3.955524 TTTGAACCCCCTCTTGTGTAA 57.044 42.857 0.00 0.00 0.00 2.41
3276 10891 3.955524 TTGAACCCCCTCTTGTGTAAA 57.044 42.857 0.00 0.00 0.00 2.01
3277 10892 3.955524 TGAACCCCCTCTTGTGTAAAA 57.044 42.857 0.00 0.00 0.00 1.52
3278 10893 4.463050 TGAACCCCCTCTTGTGTAAAAT 57.537 40.909 0.00 0.00 0.00 1.82
3279 10894 4.810345 TGAACCCCCTCTTGTGTAAAATT 58.190 39.130 0.00 0.00 0.00 1.82
3280 10895 5.954757 TGAACCCCCTCTTGTGTAAAATTA 58.045 37.500 0.00 0.00 0.00 1.40
3281 10896 6.374588 TGAACCCCCTCTTGTGTAAAATTAA 58.625 36.000 0.00 0.00 0.00 1.40
3282 10897 6.839657 TGAACCCCCTCTTGTGTAAAATTAAA 59.160 34.615 0.00 0.00 0.00 1.52
3283 10898 7.511028 TGAACCCCCTCTTGTGTAAAATTAAAT 59.489 33.333 0.00 0.00 0.00 1.40
3284 10899 7.476540 ACCCCCTCTTGTGTAAAATTAAATC 57.523 36.000 0.00 0.00 0.00 2.17
3285 10900 6.439375 ACCCCCTCTTGTGTAAAATTAAATCC 59.561 38.462 0.00 0.00 0.00 3.01
3286 10901 6.127168 CCCCCTCTTGTGTAAAATTAAATCCC 60.127 42.308 0.00 0.00 0.00 3.85
3287 10902 6.667848 CCCCTCTTGTGTAAAATTAAATCCCT 59.332 38.462 0.00 0.00 0.00 4.20
3288 10903 7.180229 CCCCTCTTGTGTAAAATTAAATCCCTT 59.820 37.037 0.00 0.00 0.00 3.95
3289 10904 8.593679 CCCTCTTGTGTAAAATTAAATCCCTTT 58.406 33.333 0.00 0.00 0.00 3.11
3290 10905 9.996554 CCTCTTGTGTAAAATTAAATCCCTTTT 57.003 29.630 0.00 0.00 0.00 2.27
3303 10918 2.436521 CCTTTTTGGGTGGTGGGAC 58.563 57.895 0.00 0.00 0.00 4.46
3304 10919 1.118965 CCTTTTTGGGTGGTGGGACC 61.119 60.000 0.00 0.00 39.22 4.46
3317 10932 2.975915 GGGACCCCCAATATTCCCT 58.024 57.895 0.00 0.00 44.65 4.20
3318 10933 0.778083 GGGACCCCCAATATTCCCTC 59.222 60.000 0.00 0.00 44.65 4.30
3319 10934 1.702567 GGGACCCCCAATATTCCCTCT 60.703 57.143 0.00 0.00 44.65 3.69
3320 10935 2.430287 GGGACCCCCAATATTCCCTCTA 60.430 54.545 0.00 0.00 44.65 2.43
3321 10936 3.542604 GGACCCCCAATATTCCCTCTAT 58.457 50.000 0.00 0.00 0.00 1.98
3322 10937 3.923425 GGACCCCCAATATTCCCTCTATT 59.077 47.826 0.00 0.00 0.00 1.73
3323 10938 5.105853 GGACCCCCAATATTCCCTCTATTA 58.894 45.833 0.00 0.00 0.00 0.98
3324 10939 5.736616 GGACCCCCAATATTCCCTCTATTAT 59.263 44.000 0.00 0.00 0.00 1.28
3325 10940 6.219772 GGACCCCCAATATTCCCTCTATTATT 59.780 42.308 0.00 0.00 0.00 1.40
3326 10941 7.257788 GGACCCCCAATATTCCCTCTATTATTT 60.258 40.741 0.00 0.00 0.00 1.40
3327 10942 7.709601 ACCCCCAATATTCCCTCTATTATTTC 58.290 38.462 0.00 0.00 0.00 2.17
3328 10943 7.299520 ACCCCCAATATTCCCTCTATTATTTCA 59.700 37.037 0.00 0.00 0.00 2.69
3329 10944 8.346828 CCCCCAATATTCCCTCTATTATTTCAT 58.653 37.037 0.00 0.00 0.00 2.57
3349 10964 9.909644 ATTTCATAAGCAGAATTAGCATCAATC 57.090 29.630 5.30 0.00 0.00 2.67
3350 10965 8.687292 TTCATAAGCAGAATTAGCATCAATCT 57.313 30.769 5.30 0.00 0.00 2.40
3351 10966 8.320396 TCATAAGCAGAATTAGCATCAATCTC 57.680 34.615 5.30 0.00 0.00 2.75
3352 10967 5.670149 AAGCAGAATTAGCATCAATCTCG 57.330 39.130 5.30 0.00 0.00 4.04
3353 10968 4.953667 AGCAGAATTAGCATCAATCTCGA 58.046 39.130 5.30 0.00 0.00 4.04
3354 10969 4.749099 AGCAGAATTAGCATCAATCTCGAC 59.251 41.667 5.30 0.00 0.00 4.20
3355 10970 4.509230 GCAGAATTAGCATCAATCTCGACA 59.491 41.667 0.00 0.00 0.00 4.35
3356 10971 5.007039 GCAGAATTAGCATCAATCTCGACAA 59.993 40.000 0.00 0.00 0.00 3.18
3357 10972 6.457392 GCAGAATTAGCATCAATCTCGACAAA 60.457 38.462 0.00 0.00 0.00 2.83
3358 10973 7.466805 CAGAATTAGCATCAATCTCGACAAAA 58.533 34.615 0.00 0.00 0.00 2.44
3359 10974 8.127327 CAGAATTAGCATCAATCTCGACAAAAT 58.873 33.333 0.00 0.00 0.00 1.82
3360 10975 8.680903 AGAATTAGCATCAATCTCGACAAAATT 58.319 29.630 0.00 0.00 0.00 1.82
3361 10976 9.294030 GAATTAGCATCAATCTCGACAAAATTT 57.706 29.630 0.00 0.00 0.00 1.82
3362 10977 8.847444 ATTAGCATCAATCTCGACAAAATTTC 57.153 30.769 0.00 0.00 0.00 2.17
3363 10978 5.644644 AGCATCAATCTCGACAAAATTTCC 58.355 37.500 0.00 0.00 0.00 3.13
3364 10979 5.416952 AGCATCAATCTCGACAAAATTTCCT 59.583 36.000 0.00 0.00 0.00 3.36
3365 10980 6.071728 AGCATCAATCTCGACAAAATTTCCTT 60.072 34.615 0.00 0.00 0.00 3.36
3366 10981 6.587608 GCATCAATCTCGACAAAATTTCCTTT 59.412 34.615 0.00 0.00 0.00 3.11
3367 10982 7.754924 GCATCAATCTCGACAAAATTTCCTTTA 59.245 33.333 0.00 0.00 0.00 1.85
3368 10983 9.282247 CATCAATCTCGACAAAATTTCCTTTAG 57.718 33.333 0.00 0.00 0.00 1.85
3369 10984 7.305474 TCAATCTCGACAAAATTTCCTTTAGC 58.695 34.615 0.00 0.00 0.00 3.09
3370 10985 5.277601 TCTCGACAAAATTTCCTTTAGCG 57.722 39.130 0.00 0.00 0.00 4.26
3371 10986 4.153475 TCTCGACAAAATTTCCTTTAGCGG 59.847 41.667 0.00 0.00 0.00 5.52
3372 10987 4.066490 TCGACAAAATTTCCTTTAGCGGA 58.934 39.130 0.00 0.00 0.00 5.54
3373 10988 4.698304 TCGACAAAATTTCCTTTAGCGGAT 59.302 37.500 0.00 0.00 32.02 4.18
3374 10989 5.875910 TCGACAAAATTTCCTTTAGCGGATA 59.124 36.000 0.00 0.00 32.02 2.59
3375 10990 6.372103 TCGACAAAATTTCCTTTAGCGGATAA 59.628 34.615 0.00 0.00 32.02 1.75
3376 10991 7.024768 CGACAAAATTTCCTTTAGCGGATAAA 58.975 34.615 0.00 0.00 32.02 1.40
3377 10992 7.539366 CGACAAAATTTCCTTTAGCGGATAAAA 59.461 33.333 0.00 0.00 32.98 1.52
3378 10993 8.528917 ACAAAATTTCCTTTAGCGGATAAAAC 57.471 30.769 0.00 0.00 32.98 2.43
3379 10994 7.601130 ACAAAATTTCCTTTAGCGGATAAAACC 59.399 33.333 0.00 0.00 32.98 3.27
3380 10995 7.476540 AAATTTCCTTTAGCGGATAAAACCT 57.523 32.000 0.00 0.00 32.98 3.50
3381 10996 8.584063 AAATTTCCTTTAGCGGATAAAACCTA 57.416 30.769 0.00 0.00 32.98 3.08
3382 10997 7.803279 ATTTCCTTTAGCGGATAAAACCTAG 57.197 36.000 0.00 0.00 32.98 3.02
3383 10998 4.700700 TCCTTTAGCGGATAAAACCTAGC 58.299 43.478 0.00 0.00 32.98 3.42
3384 10999 4.162698 TCCTTTAGCGGATAAAACCTAGCA 59.837 41.667 0.00 0.00 32.98 3.49
3385 11000 4.511826 CCTTTAGCGGATAAAACCTAGCAG 59.488 45.833 0.00 0.00 32.98 4.24
3386 11001 4.748277 TTAGCGGATAAAACCTAGCAGT 57.252 40.909 0.00 0.00 0.00 4.40
3387 11002 3.629142 AGCGGATAAAACCTAGCAGTT 57.371 42.857 0.00 0.00 0.00 3.16
3388 11003 3.270877 AGCGGATAAAACCTAGCAGTTG 58.729 45.455 0.00 0.00 0.00 3.16
3389 11004 3.007635 GCGGATAAAACCTAGCAGTTGT 58.992 45.455 0.00 0.00 0.00 3.32
3390 11005 3.181510 GCGGATAAAACCTAGCAGTTGTG 60.182 47.826 0.00 0.00 0.00 3.33
3391 11006 4.000988 CGGATAAAACCTAGCAGTTGTGT 58.999 43.478 0.00 0.00 0.00 3.72
3392 11007 4.142902 CGGATAAAACCTAGCAGTTGTGTG 60.143 45.833 0.00 0.00 0.00 3.82
3393 11008 4.760204 GGATAAAACCTAGCAGTTGTGTGT 59.240 41.667 0.00 0.00 0.00 3.72
3394 11009 5.334879 GGATAAAACCTAGCAGTTGTGTGTG 60.335 44.000 0.00 0.00 0.00 3.82
3395 11010 3.275617 AAACCTAGCAGTTGTGTGTGA 57.724 42.857 0.00 0.00 0.00 3.58
3396 11011 3.492102 AACCTAGCAGTTGTGTGTGAT 57.508 42.857 0.00 0.00 0.00 3.06
3397 11012 2.771089 ACCTAGCAGTTGTGTGTGATG 58.229 47.619 0.00 0.00 0.00 3.07
3398 11013 1.466167 CCTAGCAGTTGTGTGTGATGC 59.534 52.381 0.00 0.00 37.15 3.91
3399 11014 2.145536 CTAGCAGTTGTGTGTGATGCA 58.854 47.619 0.00 0.00 39.34 3.96
3400 11015 1.612676 AGCAGTTGTGTGTGATGCAT 58.387 45.000 0.00 0.00 39.34 3.96
3401 11016 1.268625 AGCAGTTGTGTGTGATGCATG 59.731 47.619 2.46 0.00 39.34 4.06
3402 11017 1.667756 GCAGTTGTGTGTGATGCATGG 60.668 52.381 2.46 0.00 36.88 3.66
3403 11018 1.610038 CAGTTGTGTGTGATGCATGGT 59.390 47.619 2.46 0.00 0.00 3.55
3404 11019 2.034939 CAGTTGTGTGTGATGCATGGTT 59.965 45.455 2.46 0.00 0.00 3.67
3405 11020 3.252944 CAGTTGTGTGTGATGCATGGTTA 59.747 43.478 2.46 0.00 0.00 2.85
3406 11021 3.888323 AGTTGTGTGTGATGCATGGTTAA 59.112 39.130 2.46 0.00 0.00 2.01
3407 11022 4.523943 AGTTGTGTGTGATGCATGGTTAAT 59.476 37.500 2.46 0.00 0.00 1.40
3408 11023 4.700268 TGTGTGTGATGCATGGTTAATC 57.300 40.909 2.46 0.00 0.00 1.75
3409 11024 3.443329 TGTGTGTGATGCATGGTTAATCC 59.557 43.478 2.46 0.00 0.00 3.01
3410 11025 3.696051 GTGTGTGATGCATGGTTAATCCT 59.304 43.478 2.46 0.00 37.07 3.24
3411 11026 4.881273 GTGTGTGATGCATGGTTAATCCTA 59.119 41.667 2.46 0.00 37.07 2.94
3412 11027 5.532406 GTGTGTGATGCATGGTTAATCCTAT 59.468 40.000 2.46 0.00 37.07 2.57
3413 11028 5.532032 TGTGTGATGCATGGTTAATCCTATG 59.468 40.000 2.46 0.00 37.07 2.23
3414 11029 5.532406 GTGTGATGCATGGTTAATCCTATGT 59.468 40.000 2.46 0.00 37.07 2.29
3415 11030 6.710295 GTGTGATGCATGGTTAATCCTATGTA 59.290 38.462 2.46 0.00 37.07 2.29
3416 11031 7.228507 GTGTGATGCATGGTTAATCCTATGTAA 59.771 37.037 2.46 0.00 37.07 2.41
3417 11032 7.777440 TGTGATGCATGGTTAATCCTATGTAAA 59.223 33.333 2.46 0.00 37.07 2.01
3418 11033 8.629158 GTGATGCATGGTTAATCCTATGTAAAA 58.371 33.333 2.46 0.00 37.07 1.52
3419 11034 9.194972 TGATGCATGGTTAATCCTATGTAAAAA 57.805 29.630 2.46 0.00 37.07 1.94
3422 11037 8.349245 TGCATGGTTAATCCTATGTAAAAATCG 58.651 33.333 0.00 0.00 37.07 3.34
3423 11038 8.349983 GCATGGTTAATCCTATGTAAAAATCGT 58.650 33.333 0.00 0.00 37.07 3.73
3424 11039 9.663904 CATGGTTAATCCTATGTAAAAATCGTG 57.336 33.333 0.00 0.00 37.07 4.35
3425 11040 8.215926 TGGTTAATCCTATGTAAAAATCGTGG 57.784 34.615 0.00 0.00 37.07 4.94
3426 11041 8.047911 TGGTTAATCCTATGTAAAAATCGTGGA 58.952 33.333 0.00 0.00 37.07 4.02
3427 11042 8.557029 GGTTAATCCTATGTAAAAATCGTGGAG 58.443 37.037 0.00 0.00 0.00 3.86
3428 11043 6.619801 AATCCTATGTAAAAATCGTGGAGC 57.380 37.500 0.00 0.00 0.00 4.70
3429 11044 5.092554 TCCTATGTAAAAATCGTGGAGCA 57.907 39.130 0.00 0.00 0.00 4.26
3430 11045 5.492895 TCCTATGTAAAAATCGTGGAGCAA 58.507 37.500 0.00 0.00 0.00 3.91
3431 11046 5.584649 TCCTATGTAAAAATCGTGGAGCAAG 59.415 40.000 0.00 0.00 0.00 4.01
3432 11047 5.584649 CCTATGTAAAAATCGTGGAGCAAGA 59.415 40.000 0.00 0.00 0.00 3.02
3433 11048 6.260936 CCTATGTAAAAATCGTGGAGCAAGAT 59.739 38.462 0.00 0.00 34.35 2.40
3434 11049 5.545658 TGTAAAAATCGTGGAGCAAGATC 57.454 39.130 0.00 0.00 31.96 2.75
3435 11050 5.245531 TGTAAAAATCGTGGAGCAAGATCT 58.754 37.500 0.00 0.00 31.96 2.75
3436 11051 5.705441 TGTAAAAATCGTGGAGCAAGATCTT 59.295 36.000 0.88 0.88 31.96 2.40
3437 11052 5.712152 AAAAATCGTGGAGCAAGATCTTT 57.288 34.783 4.86 0.00 31.96 2.52
3438 11053 5.712152 AAAATCGTGGAGCAAGATCTTTT 57.288 34.783 4.86 0.00 31.96 2.27
3439 11054 4.954092 AATCGTGGAGCAAGATCTTTTC 57.046 40.909 4.86 6.70 31.96 2.29
3440 11055 3.401033 TCGTGGAGCAAGATCTTTTCA 57.599 42.857 4.86 0.00 0.00 2.69
3441 11056 3.942829 TCGTGGAGCAAGATCTTTTCAT 58.057 40.909 4.86 0.00 0.00 2.57
3442 11057 3.935203 TCGTGGAGCAAGATCTTTTCATC 59.065 43.478 4.86 1.62 0.00 2.92
3443 11058 3.064545 CGTGGAGCAAGATCTTTTCATCC 59.935 47.826 4.86 10.96 0.00 3.51
3444 11059 3.379688 GTGGAGCAAGATCTTTTCATCCC 59.620 47.826 4.86 2.60 0.00 3.85
3445 11060 2.954989 GGAGCAAGATCTTTTCATCCCC 59.045 50.000 4.86 0.00 0.00 4.81
3446 11061 3.372458 GGAGCAAGATCTTTTCATCCCCT 60.372 47.826 4.86 0.00 0.00 4.79
3447 11062 4.276642 GAGCAAGATCTTTTCATCCCCTT 58.723 43.478 4.86 0.00 0.00 3.95
3448 11063 4.681484 AGCAAGATCTTTTCATCCCCTTT 58.319 39.130 4.86 0.00 0.00 3.11
3449 11064 5.089434 AGCAAGATCTTTTCATCCCCTTTT 58.911 37.500 4.86 0.00 0.00 2.27
3450 11065 6.256053 AGCAAGATCTTTTCATCCCCTTTTA 58.744 36.000 4.86 0.00 0.00 1.52
3451 11066 6.725834 AGCAAGATCTTTTCATCCCCTTTTAA 59.274 34.615 4.86 0.00 0.00 1.52
3452 11067 7.235399 AGCAAGATCTTTTCATCCCCTTTTAAA 59.765 33.333 4.86 0.00 0.00 1.52
3453 11068 8.043113 GCAAGATCTTTTCATCCCCTTTTAAAT 58.957 33.333 4.86 0.00 0.00 1.40
3454 11069 9.374838 CAAGATCTTTTCATCCCCTTTTAAATG 57.625 33.333 4.86 0.00 0.00 2.32
3455 11070 8.082672 AGATCTTTTCATCCCCTTTTAAATGG 57.917 34.615 12.20 12.20 0.00 3.16
3456 11071 7.679881 AGATCTTTTCATCCCCTTTTAAATGGT 59.320 33.333 16.58 0.00 0.00 3.55
3457 11072 8.909423 ATCTTTTCATCCCCTTTTAAATGGTA 57.091 30.769 16.58 7.01 0.00 3.25
3458 11073 8.728596 TCTTTTCATCCCCTTTTAAATGGTAA 57.271 30.769 16.58 6.73 0.00 2.85
3459 11074 9.160412 TCTTTTCATCCCCTTTTAAATGGTAAA 57.840 29.630 16.58 7.93 0.00 2.01
3460 11075 9.785982 CTTTTCATCCCCTTTTAAATGGTAAAA 57.214 29.630 16.58 12.93 0.00 1.52
3463 11078 9.732130 TTCATCCCCTTTTAAATGGTAAAAATG 57.268 29.630 16.58 12.19 0.00 2.32
3464 11079 9.105844 TCATCCCCTTTTAAATGGTAAAAATGA 57.894 29.630 16.58 13.69 0.00 2.57
3465 11080 9.904198 CATCCCCTTTTAAATGGTAAAAATGAT 57.096 29.630 16.58 6.28 0.00 2.45
3490 11105 9.726438 ATAAGATTGTATCAACCTATACCAAGC 57.274 33.333 0.00 0.00 32.36 4.01
3491 11106 7.136822 AGATTGTATCAACCTATACCAAGCA 57.863 36.000 0.00 0.00 32.36 3.91
3492 11107 7.749666 AGATTGTATCAACCTATACCAAGCAT 58.250 34.615 0.00 0.00 32.36 3.79
3493 11108 7.880195 AGATTGTATCAACCTATACCAAGCATC 59.120 37.037 0.00 0.00 32.36 3.91
3494 11109 6.747414 TGTATCAACCTATACCAAGCATCT 57.253 37.500 0.00 0.00 32.36 2.90
3495 11110 7.136822 TGTATCAACCTATACCAAGCATCTT 57.863 36.000 0.00 0.00 32.36 2.40
3496 11111 7.573710 TGTATCAACCTATACCAAGCATCTTT 58.426 34.615 0.00 0.00 32.36 2.52
3497 11112 8.710239 TGTATCAACCTATACCAAGCATCTTTA 58.290 33.333 0.00 0.00 32.36 1.85
3498 11113 9.555727 GTATCAACCTATACCAAGCATCTTTAA 57.444 33.333 0.00 0.00 0.00 1.52
3500 11115 8.871629 TCAACCTATACCAAGCATCTTTAAAA 57.128 30.769 0.00 0.00 0.00 1.52
3501 11116 9.474313 TCAACCTATACCAAGCATCTTTAAAAT 57.526 29.630 0.00 0.00 0.00 1.82
3509 11124 8.422577 ACCAAGCATCTTTAAAATTTACTCCT 57.577 30.769 0.00 0.00 0.00 3.69
3510 11125 8.870116 ACCAAGCATCTTTAAAATTTACTCCTT 58.130 29.630 0.00 0.00 0.00 3.36
3529 11144 8.974060 ACTCCTTATCTTTGTTTGAAGTACAA 57.026 30.769 0.00 0.00 36.65 2.41
3530 11145 9.403583 ACTCCTTATCTTTGTTTGAAGTACAAA 57.596 29.630 0.00 0.00 44.79 2.83
3545 11160 6.459670 AAGTACAAAACTTCAAAATCCGGT 57.540 33.333 0.00 0.00 45.64 5.28
3546 11161 5.827666 AGTACAAAACTTCAAAATCCGGTG 58.172 37.500 0.00 0.00 33.35 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
195 197 1.690219 CCCTAGCCACCATCGCTTCT 61.690 60.000 0.00 0.00 37.79 2.85
203 205 2.169769 CGATTCTAAACCCTAGCCACCA 59.830 50.000 0.00 0.00 0.00 4.17
220 222 5.871396 ACATGGTATCAGTCTAACCGATT 57.129 39.130 0.00 0.00 35.98 3.34
230 232 5.529289 TCTCCCTTCTAACATGGTATCAGT 58.471 41.667 0.00 0.00 0.00 3.41
275 279 3.127548 CACGAGGCTCAAGCAATACAATT 59.872 43.478 15.95 0.00 44.36 2.32
503 510 7.378966 TCCTAAGATAGCACTATTGTACATGC 58.621 38.462 10.53 10.53 38.39 4.06
514 521 2.432510 GTGGCACTCCTAAGATAGCACT 59.567 50.000 11.13 0.00 0.00 4.40
632 639 9.774742 GTCATTTCTAAAAATATGGTGAGACAC 57.225 33.333 0.00 0.00 33.27 3.67
705 712 9.679661 TCTTACATGTAATTTAGAGATGCCAAA 57.320 29.630 18.35 0.00 0.00 3.28
706 713 9.109393 GTCTTACATGTAATTTAGAGATGCCAA 57.891 33.333 18.35 0.00 0.00 4.52
707 714 8.486210 AGTCTTACATGTAATTTAGAGATGCCA 58.514 33.333 18.35 0.00 0.00 4.92
708 715 8.894768 AGTCTTACATGTAATTTAGAGATGCC 57.105 34.615 18.35 1.21 0.00 4.40
747 754 4.019771 TGGCATGTACAGTGGTTGATAAGA 60.020 41.667 0.33 0.00 0.00 2.10
793 800 1.225376 TTTTAGGCCGAGTGCGTGTG 61.225 55.000 0.00 0.00 42.61 3.82
794 801 1.070105 TTTTAGGCCGAGTGCGTGT 59.930 52.632 0.00 0.00 42.61 4.49
899 951 8.359060 GCTGCTGCTATTTGTAGGTATATATC 57.641 38.462 8.53 0.00 36.03 1.63
1492 2106 5.793026 TCCAGTGCAATTTTTGTGAAAAC 57.207 34.783 0.00 0.00 37.56 2.43
1505 2123 6.576662 TTTTCCGTTTATAATCCAGTGCAA 57.423 33.333 0.00 0.00 0.00 4.08
1532 2150 2.423538 GCCGGTTCTGAAAAGTGCATAT 59.576 45.455 1.90 0.00 0.00 1.78
1676 2424 2.369291 ATCCCCAGCCCATCTGCT 60.369 61.111 0.00 0.00 44.00 4.24
1787 2727 1.338484 ACATCATCGTTCAGCAGCAGT 60.338 47.619 0.00 0.00 0.00 4.40
1788 2728 1.366679 ACATCATCGTTCAGCAGCAG 58.633 50.000 0.00 0.00 0.00 4.24
1789 2729 2.094026 AGTACATCATCGTTCAGCAGCA 60.094 45.455 0.00 0.00 0.00 4.41
1835 8993 5.196341 TGTCCATCACATTATCGTACTCC 57.804 43.478 0.00 0.00 0.00 3.85
2026 9187 1.424493 CTCATTTCCTCGTCAGCGCC 61.424 60.000 2.29 0.00 38.14 6.53
2089 9254 1.658673 CATAGTAGCCGACGGGGAC 59.341 63.158 17.22 0.00 38.47 4.46
2256 9444 2.972505 CGCAAAGTGTGGCCGTCT 60.973 61.111 0.00 0.00 0.00 4.18
2528 10130 4.320494 GCAGATCACATCTTGGAAAACGTT 60.320 41.667 0.00 0.00 37.58 3.99
2570 10173 6.261118 GTCAATTGAAACCATGATAGCAGAC 58.739 40.000 10.35 0.00 0.00 3.51
2763 10376 1.370587 TTAAAAGATTCGCCGGCCGG 61.371 55.000 40.26 40.26 37.59 6.13
2786 10399 3.282157 CCATCAAGCGGGCGGATG 61.282 66.667 16.37 16.37 38.47 3.51
2798 10411 1.806247 CGCAAGATCTAACGGCCATCA 60.806 52.381 2.24 0.00 43.02 3.07
3055 10670 1.789576 AAGAGCCACCCGGGTTTGAT 61.790 55.000 27.83 18.04 45.28 2.57
3056 10671 2.002018 AAAGAGCCACCCGGGTTTGA 62.002 55.000 27.83 0.00 45.28 2.69
3057 10672 0.250989 TAAAGAGCCACCCGGGTTTG 60.251 55.000 27.83 19.95 45.28 2.93
3059 10674 1.377612 GTAAAGAGCCACCCGGGTT 59.622 57.895 27.83 10.58 45.28 4.11
3063 10678 1.743394 GGAAATGTAAAGAGCCACCCG 59.257 52.381 0.00 0.00 0.00 5.28
3064 10679 2.802719 TGGAAATGTAAAGAGCCACCC 58.197 47.619 0.00 0.00 0.00 4.61
3065 10680 4.864704 TTTGGAAATGTAAAGAGCCACC 57.135 40.909 0.00 0.00 0.00 4.61
3066 10681 8.470002 AGAATATTTGGAAATGTAAAGAGCCAC 58.530 33.333 0.00 0.00 0.00 5.01
3067 10682 8.593945 AGAATATTTGGAAATGTAAAGAGCCA 57.406 30.769 0.00 0.00 0.00 4.75
3068 10683 8.686334 TGAGAATATTTGGAAATGTAAAGAGCC 58.314 33.333 0.00 0.00 0.00 4.70
3069 10684 9.727627 CTGAGAATATTTGGAAATGTAAAGAGC 57.272 33.333 0.00 0.00 0.00 4.09
3080 10695 9.014297 GGTCTCTTTTTCTGAGAATATTTGGAA 57.986 33.333 0.00 0.00 41.52 3.53
3081 10696 8.163408 TGGTCTCTTTTTCTGAGAATATTTGGA 58.837 33.333 0.00 0.00 41.52 3.53
3082 10697 8.340618 TGGTCTCTTTTTCTGAGAATATTTGG 57.659 34.615 0.00 0.00 41.52 3.28
3084 10699 9.972106 AGATGGTCTCTTTTTCTGAGAATATTT 57.028 29.630 0.00 0.00 41.52 1.40
3085 10700 9.972106 AAGATGGTCTCTTTTTCTGAGAATATT 57.028 29.630 0.00 0.00 41.60 1.28
3088 10703 9.447157 CTTAAGATGGTCTCTTTTTCTGAGAAT 57.553 33.333 0.00 0.00 41.60 2.40
3089 10704 8.651389 TCTTAAGATGGTCTCTTTTTCTGAGAA 58.349 33.333 0.00 0.00 41.60 2.87
3090 10705 8.195165 TCTTAAGATGGTCTCTTTTTCTGAGA 57.805 34.615 0.00 0.00 41.60 3.27
3091 10706 9.097257 GATCTTAAGATGGTCTCTTTTTCTGAG 57.903 37.037 22.61 0.00 41.60 3.35
3092 10707 8.043710 GGATCTTAAGATGGTCTCTTTTTCTGA 58.956 37.037 22.61 0.00 41.60 3.27
3093 10708 7.826252 TGGATCTTAAGATGGTCTCTTTTTCTG 59.174 37.037 22.61 0.00 41.60 3.02
3094 10709 7.922382 TGGATCTTAAGATGGTCTCTTTTTCT 58.078 34.615 22.61 0.00 41.60 2.52
3095 10710 8.567285 TTGGATCTTAAGATGGTCTCTTTTTC 57.433 34.615 22.61 4.39 41.60 2.29
3096 10711 8.940397 TTTGGATCTTAAGATGGTCTCTTTTT 57.060 30.769 22.61 0.00 41.60 1.94
3097 10712 8.940397 TTTTGGATCTTAAGATGGTCTCTTTT 57.060 30.769 22.61 0.00 41.60 2.27
3101 10716 9.225436 GGATATTTTGGATCTTAAGATGGTCTC 57.775 37.037 22.61 8.49 34.37 3.36
3102 10717 8.727149 TGGATATTTTGGATCTTAAGATGGTCT 58.273 33.333 22.61 0.00 34.37 3.85
3103 10718 8.924511 TGGATATTTTGGATCTTAAGATGGTC 57.075 34.615 22.61 9.22 34.37 4.02
3104 10719 9.136323 GTTGGATATTTTGGATCTTAAGATGGT 57.864 33.333 22.61 0.00 34.37 3.55
3105 10720 9.359653 AGTTGGATATTTTGGATCTTAAGATGG 57.640 33.333 22.61 0.00 34.37 3.51
3107 10722 8.854117 GCAGTTGGATATTTTGGATCTTAAGAT 58.146 33.333 17.96 17.96 37.51 2.40
3108 10723 8.055181 AGCAGTTGGATATTTTGGATCTTAAGA 58.945 33.333 7.82 7.82 0.00 2.10
3109 10724 8.230472 AGCAGTTGGATATTTTGGATCTTAAG 57.770 34.615 0.00 0.00 0.00 1.85
3110 10725 8.593945 AAGCAGTTGGATATTTTGGATCTTAA 57.406 30.769 0.00 0.00 0.00 1.85
3111 10726 9.866655 ATAAGCAGTTGGATATTTTGGATCTTA 57.133 29.630 0.00 0.00 0.00 2.10
3112 10727 8.773033 ATAAGCAGTTGGATATTTTGGATCTT 57.227 30.769 0.00 0.00 0.00 2.40
3113 10728 8.773033 AATAAGCAGTTGGATATTTTGGATCT 57.227 30.769 0.00 0.00 0.00 2.75
3114 10729 9.899226 GTAATAAGCAGTTGGATATTTTGGATC 57.101 33.333 0.00 0.00 0.00 3.36
3115 10730 9.420118 TGTAATAAGCAGTTGGATATTTTGGAT 57.580 29.630 0.00 0.00 0.00 3.41
3116 10731 8.682710 GTGTAATAAGCAGTTGGATATTTTGGA 58.317 33.333 0.00 0.00 0.00 3.53
3117 10732 8.465999 TGTGTAATAAGCAGTTGGATATTTTGG 58.534 33.333 0.00 0.00 0.00 3.28
3118 10733 9.853555 TTGTGTAATAAGCAGTTGGATATTTTG 57.146 29.630 0.00 0.00 0.00 2.44
3120 10735 8.686334 CCTTGTGTAATAAGCAGTTGGATATTT 58.314 33.333 0.00 0.00 33.22 1.40
3121 10736 7.834181 ACCTTGTGTAATAAGCAGTTGGATATT 59.166 33.333 0.00 0.00 33.22 1.28
3122 10737 7.346471 ACCTTGTGTAATAAGCAGTTGGATAT 58.654 34.615 0.00 0.00 33.22 1.63
3123 10738 6.717289 ACCTTGTGTAATAAGCAGTTGGATA 58.283 36.000 0.00 0.00 33.22 2.59
3124 10739 5.570320 ACCTTGTGTAATAAGCAGTTGGAT 58.430 37.500 0.00 0.00 33.22 3.41
3125 10740 4.980573 ACCTTGTGTAATAAGCAGTTGGA 58.019 39.130 0.00 0.00 33.22 3.53
3126 10741 6.349033 GGTTACCTTGTGTAATAAGCAGTTGG 60.349 42.308 0.00 0.00 41.33 3.77
3127 10742 6.205853 TGGTTACCTTGTGTAATAAGCAGTTG 59.794 38.462 2.07 0.00 41.33 3.16
3128 10743 6.300703 TGGTTACCTTGTGTAATAAGCAGTT 58.699 36.000 2.07 0.00 41.33 3.16
3129 10744 5.871834 TGGTTACCTTGTGTAATAAGCAGT 58.128 37.500 2.07 0.00 41.33 4.40
3130 10745 6.811253 TTGGTTACCTTGTGTAATAAGCAG 57.189 37.500 2.07 0.00 41.33 4.24
3131 10746 6.773685 ACTTTGGTTACCTTGTGTAATAAGCA 59.226 34.615 2.07 0.00 41.33 3.91
3132 10747 7.210718 ACTTTGGTTACCTTGTGTAATAAGC 57.789 36.000 2.07 0.00 41.33 3.09
3136 10751 8.927675 TGAATACTTTGGTTACCTTGTGTAAT 57.072 30.769 2.07 0.00 41.33 1.89
3137 10752 8.927675 ATGAATACTTTGGTTACCTTGTGTAA 57.072 30.769 2.07 0.00 37.09 2.41
3139 10754 8.956426 CATATGAATACTTTGGTTACCTTGTGT 58.044 33.333 2.07 0.00 0.00 3.72
3140 10755 9.173021 TCATATGAATACTTTGGTTACCTTGTG 57.827 33.333 1.98 0.00 0.00 3.33
3141 10756 9.920946 ATCATATGAATACTTTGGTTACCTTGT 57.079 29.630 9.99 1.56 0.00 3.16
3148 10763 9.479549 AACCTCAATCATATGAATACTTTGGTT 57.520 29.630 9.99 13.69 0.00 3.67
3149 10764 9.479549 AAACCTCAATCATATGAATACTTTGGT 57.520 29.630 9.99 8.93 0.00 3.67
3150 10765 9.956720 GAAACCTCAATCATATGAATACTTTGG 57.043 33.333 9.99 8.35 0.00 3.28
3151 10766 9.956720 GGAAACCTCAATCATATGAATACTTTG 57.043 33.333 9.99 9.36 0.00 2.77
3152 10767 9.699410 TGGAAACCTCAATCATATGAATACTTT 57.301 29.630 9.99 3.27 0.00 2.66
3153 10768 9.125026 GTGGAAACCTCAATCATATGAATACTT 57.875 33.333 9.99 0.00 0.00 2.24
3154 10769 8.497745 AGTGGAAACCTCAATCATATGAATACT 58.502 33.333 9.99 0.00 0.00 2.12
3155 10770 8.562892 CAGTGGAAACCTCAATCATATGAATAC 58.437 37.037 9.99 0.00 0.00 1.89
3156 10771 8.493607 TCAGTGGAAACCTCAATCATATGAATA 58.506 33.333 9.99 0.00 0.00 1.75
3157 10772 7.348815 TCAGTGGAAACCTCAATCATATGAAT 58.651 34.615 9.99 0.00 0.00 2.57
3158 10773 6.720309 TCAGTGGAAACCTCAATCATATGAA 58.280 36.000 9.99 0.00 0.00 2.57
3159 10774 6.312141 TCAGTGGAAACCTCAATCATATGA 57.688 37.500 8.10 8.10 0.00 2.15
3160 10775 8.859236 ATATCAGTGGAAACCTCAATCATATG 57.141 34.615 0.00 0.00 0.00 1.78
3163 10778 9.872684 AAATATATCAGTGGAAACCTCAATCAT 57.127 29.630 0.00 0.00 0.00 2.45
3169 10784 9.495572 CCTCTTAAATATATCAGTGGAAACCTC 57.504 37.037 0.00 0.00 0.00 3.85
3170 10785 9.004231 ACCTCTTAAATATATCAGTGGAAACCT 57.996 33.333 11.73 0.00 0.00 3.50
3171 10786 9.628500 AACCTCTTAAATATATCAGTGGAAACC 57.372 33.333 11.73 0.00 0.00 3.27
3246 10861 8.371699 CACAAGAGGGGGTTCAAATATTAAAAA 58.628 33.333 0.00 0.00 0.00 1.94
3247 10862 7.511028 ACACAAGAGGGGGTTCAAATATTAAAA 59.489 33.333 0.00 0.00 0.00 1.52
3248 10863 7.013834 ACACAAGAGGGGGTTCAAATATTAAA 58.986 34.615 0.00 0.00 0.00 1.52
3249 10864 6.557568 ACACAAGAGGGGGTTCAAATATTAA 58.442 36.000 0.00 0.00 0.00 1.40
3250 10865 6.147437 ACACAAGAGGGGGTTCAAATATTA 57.853 37.500 0.00 0.00 0.00 0.98
3251 10866 5.010708 ACACAAGAGGGGGTTCAAATATT 57.989 39.130 0.00 0.00 0.00 1.28
3252 10867 4.675063 ACACAAGAGGGGGTTCAAATAT 57.325 40.909 0.00 0.00 0.00 1.28
3253 10868 5.586155 TTACACAAGAGGGGGTTCAAATA 57.414 39.130 0.00 0.00 0.00 1.40
3254 10869 4.463050 TTACACAAGAGGGGGTTCAAAT 57.537 40.909 0.00 0.00 0.00 2.32
3255 10870 3.955524 TTACACAAGAGGGGGTTCAAA 57.044 42.857 0.00 0.00 0.00 2.69
3256 10871 3.955524 TTTACACAAGAGGGGGTTCAA 57.044 42.857 0.00 0.00 0.00 2.69
3257 10872 3.955524 TTTTACACAAGAGGGGGTTCA 57.044 42.857 0.00 0.00 0.00 3.18
3258 10873 6.904463 TTAATTTTACACAAGAGGGGGTTC 57.096 37.500 0.00 0.00 0.00 3.62
3259 10874 7.038587 GGATTTAATTTTACACAAGAGGGGGTT 60.039 37.037 0.00 0.00 0.00 4.11
3260 10875 6.439375 GGATTTAATTTTACACAAGAGGGGGT 59.561 38.462 0.00 0.00 0.00 4.95
3261 10876 6.127168 GGGATTTAATTTTACACAAGAGGGGG 60.127 42.308 0.00 0.00 0.00 5.40
3262 10877 6.667848 AGGGATTTAATTTTACACAAGAGGGG 59.332 38.462 0.00 0.00 0.00 4.79
3263 10878 7.718334 AGGGATTTAATTTTACACAAGAGGG 57.282 36.000 0.00 0.00 0.00 4.30
3264 10879 9.996554 AAAAGGGATTTAATTTTACACAAGAGG 57.003 29.630 0.00 0.00 0.00 3.69
3285 10900 1.118965 GGTCCCACCACCCAAAAAGG 61.119 60.000 0.00 0.00 38.42 3.11
3286 10901 2.436521 GGTCCCACCACCCAAAAAG 58.563 57.895 0.00 0.00 38.42 2.27
3287 10902 4.709690 GGTCCCACCACCCAAAAA 57.290 55.556 0.00 0.00 38.42 1.94
3300 10915 1.834540 AGAGGGAATATTGGGGGTCC 58.165 55.000 0.00 0.00 0.00 4.46
3301 10916 6.910259 ATAATAGAGGGAATATTGGGGGTC 57.090 41.667 0.00 0.00 0.00 4.46
3302 10917 7.299520 TGAAATAATAGAGGGAATATTGGGGGT 59.700 37.037 0.00 0.00 0.00 4.95
3303 10918 7.708624 TGAAATAATAGAGGGAATATTGGGGG 58.291 38.462 0.00 0.00 0.00 5.40
3323 10938 9.909644 GATTGATGCTAATTCTGCTTATGAAAT 57.090 29.630 5.21 0.00 0.00 2.17
3324 10939 9.128404 AGATTGATGCTAATTCTGCTTATGAAA 57.872 29.630 5.21 0.00 0.00 2.69
3325 10940 8.687292 AGATTGATGCTAATTCTGCTTATGAA 57.313 30.769 5.21 0.00 0.00 2.57
3326 10941 7.117379 CGAGATTGATGCTAATTCTGCTTATGA 59.883 37.037 5.21 0.00 0.00 2.15
3327 10942 7.117379 TCGAGATTGATGCTAATTCTGCTTATG 59.883 37.037 5.21 0.00 0.00 1.90
3328 10943 7.117523 GTCGAGATTGATGCTAATTCTGCTTAT 59.882 37.037 0.00 0.00 0.00 1.73
3329 10944 6.422100 GTCGAGATTGATGCTAATTCTGCTTA 59.578 38.462 0.00 0.00 0.00 3.09
3330 10945 5.236047 GTCGAGATTGATGCTAATTCTGCTT 59.764 40.000 0.00 0.00 0.00 3.91
3331 10946 4.749099 GTCGAGATTGATGCTAATTCTGCT 59.251 41.667 0.00 0.00 0.00 4.24
3332 10947 4.509230 TGTCGAGATTGATGCTAATTCTGC 59.491 41.667 0.00 0.00 0.00 4.26
3333 10948 6.594284 TTGTCGAGATTGATGCTAATTCTG 57.406 37.500 0.00 0.00 0.00 3.02
3334 10949 7.615582 TTTTGTCGAGATTGATGCTAATTCT 57.384 32.000 0.00 0.00 0.00 2.40
3335 10950 8.847444 AATTTTGTCGAGATTGATGCTAATTC 57.153 30.769 0.00 0.00 0.00 2.17
3336 10951 9.294030 GAAATTTTGTCGAGATTGATGCTAATT 57.706 29.630 0.00 0.00 0.00 1.40
3337 10952 7.917505 GGAAATTTTGTCGAGATTGATGCTAAT 59.082 33.333 0.00 0.00 0.00 1.73
3338 10953 7.121168 AGGAAATTTTGTCGAGATTGATGCTAA 59.879 33.333 0.00 0.00 0.00 3.09
3339 10954 6.599244 AGGAAATTTTGTCGAGATTGATGCTA 59.401 34.615 0.00 0.00 0.00 3.49
3340 10955 5.416952 AGGAAATTTTGTCGAGATTGATGCT 59.583 36.000 0.00 0.00 0.00 3.79
3341 10956 5.644644 AGGAAATTTTGTCGAGATTGATGC 58.355 37.500 0.00 0.00 0.00 3.91
3342 10957 9.282247 CTAAAGGAAATTTTGTCGAGATTGATG 57.718 33.333 0.00 0.00 32.01 3.07
3343 10958 7.970614 GCTAAAGGAAATTTTGTCGAGATTGAT 59.029 33.333 0.00 0.00 32.01 2.57
3344 10959 7.305474 GCTAAAGGAAATTTTGTCGAGATTGA 58.695 34.615 0.00 0.00 32.01 2.57
3345 10960 6.249260 CGCTAAAGGAAATTTTGTCGAGATTG 59.751 38.462 0.00 0.00 30.93 2.67
3346 10961 6.314784 CGCTAAAGGAAATTTTGTCGAGATT 58.685 36.000 0.00 0.00 30.93 2.40
3347 10962 5.163754 CCGCTAAAGGAAATTTTGTCGAGAT 60.164 40.000 0.00 0.00 30.93 2.75
3348 10963 4.153475 CCGCTAAAGGAAATTTTGTCGAGA 59.847 41.667 0.00 0.00 30.93 4.04
3349 10964 4.153475 TCCGCTAAAGGAAATTTTGTCGAG 59.847 41.667 0.00 0.00 37.36 4.04
3350 10965 4.066490 TCCGCTAAAGGAAATTTTGTCGA 58.934 39.130 0.00 0.00 37.36 4.20
3351 10966 4.413495 TCCGCTAAAGGAAATTTTGTCG 57.587 40.909 0.00 0.00 37.36 4.35
3352 10967 8.644619 GTTTTATCCGCTAAAGGAAATTTTGTC 58.355 33.333 0.00 0.00 44.50 3.18
3353 10968 7.601130 GGTTTTATCCGCTAAAGGAAATTTTGT 59.399 33.333 0.00 0.00 44.50 2.83
3354 10969 7.817478 AGGTTTTATCCGCTAAAGGAAATTTTG 59.183 33.333 0.00 0.00 44.50 2.44
3355 10970 7.903145 AGGTTTTATCCGCTAAAGGAAATTTT 58.097 30.769 0.00 0.00 44.50 1.82
3356 10971 7.476540 AGGTTTTATCCGCTAAAGGAAATTT 57.523 32.000 0.00 0.00 44.50 1.82
3357 10972 7.201794 GCTAGGTTTTATCCGCTAAAGGAAATT 60.202 37.037 0.00 0.00 44.50 1.82
3358 10973 6.262496 GCTAGGTTTTATCCGCTAAAGGAAAT 59.738 38.462 0.00 0.00 44.50 2.17
3359 10974 5.587443 GCTAGGTTTTATCCGCTAAAGGAAA 59.413 40.000 0.00 0.00 44.50 3.13
3360 10975 5.121105 GCTAGGTTTTATCCGCTAAAGGAA 58.879 41.667 0.00 0.00 44.50 3.36
3361 10976 4.162698 TGCTAGGTTTTATCCGCTAAAGGA 59.837 41.667 0.00 0.00 45.54 3.36
3362 10977 4.448210 TGCTAGGTTTTATCCGCTAAAGG 58.552 43.478 0.00 0.00 31.12 3.11
3363 10978 5.116882 ACTGCTAGGTTTTATCCGCTAAAG 58.883 41.667 0.00 0.00 31.12 1.85
3364 10979 5.093849 ACTGCTAGGTTTTATCCGCTAAA 57.906 39.130 0.00 0.00 0.00 1.85
3365 10980 4.748277 ACTGCTAGGTTTTATCCGCTAA 57.252 40.909 0.00 0.00 0.00 3.09
3366 10981 4.081309 ACAACTGCTAGGTTTTATCCGCTA 60.081 41.667 0.00 0.00 0.00 4.26
3367 10982 3.270877 CAACTGCTAGGTTTTATCCGCT 58.729 45.455 0.00 0.00 0.00 5.52
3368 10983 3.007635 ACAACTGCTAGGTTTTATCCGC 58.992 45.455 0.00 0.00 0.00 5.54
3369 10984 4.000988 ACACAACTGCTAGGTTTTATCCG 58.999 43.478 0.00 0.00 0.00 4.18
3370 10985 4.760204 ACACACAACTGCTAGGTTTTATCC 59.240 41.667 0.00 0.00 0.00 2.59
3371 10986 5.468746 TCACACACAACTGCTAGGTTTTATC 59.531 40.000 0.00 0.00 0.00 1.75
3372 10987 5.373222 TCACACACAACTGCTAGGTTTTAT 58.627 37.500 0.00 0.00 0.00 1.40
3373 10988 4.771903 TCACACACAACTGCTAGGTTTTA 58.228 39.130 0.00 0.00 0.00 1.52
3374 10989 3.616219 TCACACACAACTGCTAGGTTTT 58.384 40.909 0.00 0.00 0.00 2.43
3375 10990 3.275617 TCACACACAACTGCTAGGTTT 57.724 42.857 0.00 0.00 0.00 3.27
3376 10991 3.141398 CATCACACACAACTGCTAGGTT 58.859 45.455 0.00 0.00 0.00 3.50
3377 10992 2.771089 CATCACACACAACTGCTAGGT 58.229 47.619 0.00 0.00 0.00 3.08
3378 10993 1.466167 GCATCACACACAACTGCTAGG 59.534 52.381 0.00 0.00 0.00 3.02
3379 10994 2.145536 TGCATCACACACAACTGCTAG 58.854 47.619 0.00 0.00 34.02 3.42
3380 10995 2.252976 TGCATCACACACAACTGCTA 57.747 45.000 0.00 0.00 34.02 3.49
3381 10996 1.268625 CATGCATCACACACAACTGCT 59.731 47.619 0.00 0.00 34.02 4.24
3382 10997 1.667756 CCATGCATCACACACAACTGC 60.668 52.381 0.00 0.00 0.00 4.40
3383 10998 1.610038 ACCATGCATCACACACAACTG 59.390 47.619 0.00 0.00 0.00 3.16
3384 10999 1.985473 ACCATGCATCACACACAACT 58.015 45.000 0.00 0.00 0.00 3.16
3385 11000 2.798976 AACCATGCATCACACACAAC 57.201 45.000 0.00 0.00 0.00 3.32
3386 11001 4.082300 GGATTAACCATGCATCACACACAA 60.082 41.667 0.00 0.00 38.79 3.33
3387 11002 3.443329 GGATTAACCATGCATCACACACA 59.557 43.478 0.00 0.00 38.79 3.72
3388 11003 3.696051 AGGATTAACCATGCATCACACAC 59.304 43.478 0.00 0.00 42.04 3.82
3389 11004 3.966979 AGGATTAACCATGCATCACACA 58.033 40.909 0.00 0.00 42.04 3.72
3390 11005 5.532406 ACATAGGATTAACCATGCATCACAC 59.468 40.000 0.00 0.00 42.04 3.82
3391 11006 5.693961 ACATAGGATTAACCATGCATCACA 58.306 37.500 0.00 0.00 42.04 3.58
3392 11007 7.744087 TTACATAGGATTAACCATGCATCAC 57.256 36.000 0.00 0.00 42.04 3.06
3393 11008 8.759481 TTTTACATAGGATTAACCATGCATCA 57.241 30.769 0.00 0.00 42.04 3.07
3396 11011 8.349245 CGATTTTTACATAGGATTAACCATGCA 58.651 33.333 0.00 0.00 42.04 3.96
3397 11012 8.349983 ACGATTTTTACATAGGATTAACCATGC 58.650 33.333 0.00 0.00 42.04 4.06
3398 11013 9.663904 CACGATTTTTACATAGGATTAACCATG 57.336 33.333 0.00 0.00 42.04 3.66
3399 11014 8.846211 CCACGATTTTTACATAGGATTAACCAT 58.154 33.333 0.00 0.00 42.04 3.55
3400 11015 8.047911 TCCACGATTTTTACATAGGATTAACCA 58.952 33.333 0.00 0.00 42.04 3.67
3401 11016 8.441312 TCCACGATTTTTACATAGGATTAACC 57.559 34.615 0.00 0.00 39.35 2.85
3402 11017 8.068380 GCTCCACGATTTTTACATAGGATTAAC 58.932 37.037 0.00 0.00 0.00 2.01
3403 11018 7.771361 TGCTCCACGATTTTTACATAGGATTAA 59.229 33.333 0.00 0.00 0.00 1.40
3404 11019 7.276658 TGCTCCACGATTTTTACATAGGATTA 58.723 34.615 0.00 0.00 0.00 1.75
3405 11020 6.119536 TGCTCCACGATTTTTACATAGGATT 58.880 36.000 0.00 0.00 0.00 3.01
3406 11021 5.680619 TGCTCCACGATTTTTACATAGGAT 58.319 37.500 0.00 0.00 0.00 3.24
3407 11022 5.092554 TGCTCCACGATTTTTACATAGGA 57.907 39.130 0.00 0.00 0.00 2.94
3408 11023 5.584649 TCTTGCTCCACGATTTTTACATAGG 59.415 40.000 0.00 0.00 0.00 2.57
3409 11024 6.662414 TCTTGCTCCACGATTTTTACATAG 57.338 37.500 0.00 0.00 0.00 2.23
3410 11025 7.047891 AGATCTTGCTCCACGATTTTTACATA 58.952 34.615 0.00 0.00 0.00 2.29
3411 11026 5.882557 AGATCTTGCTCCACGATTTTTACAT 59.117 36.000 0.00 0.00 0.00 2.29
3412 11027 5.245531 AGATCTTGCTCCACGATTTTTACA 58.754 37.500 0.00 0.00 0.00 2.41
3413 11028 5.803020 AGATCTTGCTCCACGATTTTTAC 57.197 39.130 0.00 0.00 0.00 2.01
3414 11029 6.817765 AAAGATCTTGCTCCACGATTTTTA 57.182 33.333 9.17 0.00 29.53 1.52
3415 11030 5.712152 AAAGATCTTGCTCCACGATTTTT 57.288 34.783 9.17 0.00 27.53 1.94
3416 11031 5.241506 TGAAAAGATCTTGCTCCACGATTTT 59.758 36.000 9.17 0.00 0.00 1.82
3417 11032 4.761739 TGAAAAGATCTTGCTCCACGATTT 59.238 37.500 9.17 0.00 0.00 2.17
3418 11033 4.326826 TGAAAAGATCTTGCTCCACGATT 58.673 39.130 9.17 0.00 0.00 3.34
3419 11034 3.942829 TGAAAAGATCTTGCTCCACGAT 58.057 40.909 9.17 0.00 0.00 3.73
3420 11035 3.401033 TGAAAAGATCTTGCTCCACGA 57.599 42.857 9.17 0.00 0.00 4.35
3421 11036 3.064545 GGATGAAAAGATCTTGCTCCACG 59.935 47.826 9.17 0.00 0.00 4.94
3422 11037 3.379688 GGGATGAAAAGATCTTGCTCCAC 59.620 47.826 9.17 5.93 0.00 4.02
3423 11038 3.624777 GGGATGAAAAGATCTTGCTCCA 58.375 45.455 9.17 5.38 0.00 3.86
3424 11039 2.954989 GGGGATGAAAAGATCTTGCTCC 59.045 50.000 9.17 12.02 0.00 4.70
3425 11040 3.895998 AGGGGATGAAAAGATCTTGCTC 58.104 45.455 9.17 9.56 0.00 4.26
3426 11041 4.328118 AAGGGGATGAAAAGATCTTGCT 57.672 40.909 9.17 0.00 0.00 3.91
3427 11042 5.411831 AAAAGGGGATGAAAAGATCTTGC 57.588 39.130 9.17 5.20 0.00 4.01
3428 11043 9.374838 CATTTAAAAGGGGATGAAAAGATCTTG 57.625 33.333 9.17 0.00 0.00 3.02
3429 11044 8.542926 CCATTTAAAAGGGGATGAAAAGATCTT 58.457 33.333 0.88 0.88 0.00 2.40
3430 11045 7.679881 ACCATTTAAAAGGGGATGAAAAGATCT 59.320 33.333 13.72 0.00 0.00 2.75
3431 11046 7.851228 ACCATTTAAAAGGGGATGAAAAGATC 58.149 34.615 13.72 0.00 0.00 2.75
3432 11047 7.813087 ACCATTTAAAAGGGGATGAAAAGAT 57.187 32.000 13.72 0.00 0.00 2.40
3433 11048 8.728596 TTACCATTTAAAAGGGGATGAAAAGA 57.271 30.769 13.72 0.00 0.00 2.52
3434 11049 9.785982 TTTTACCATTTAAAAGGGGATGAAAAG 57.214 29.630 13.72 0.00 0.00 2.27
3437 11052 9.732130 CATTTTTACCATTTAAAAGGGGATGAA 57.268 29.630 13.72 4.19 0.00 2.57
3438 11053 9.105844 TCATTTTTACCATTTAAAAGGGGATGA 57.894 29.630 13.72 11.10 0.00 2.92
3439 11054 9.904198 ATCATTTTTACCATTTAAAAGGGGATG 57.096 29.630 13.72 9.38 0.00 3.51
3464 11079 9.726438 GCTTGGTATAGGTTGATACAATCTTAT 57.274 33.333 2.65 0.00 34.50 1.73
3465 11080 8.710239 TGCTTGGTATAGGTTGATACAATCTTA 58.290 33.333 2.65 0.00 34.50 2.10
3466 11081 7.573710 TGCTTGGTATAGGTTGATACAATCTT 58.426 34.615 2.65 0.00 34.50 2.40
3467 11082 7.136822 TGCTTGGTATAGGTTGATACAATCT 57.863 36.000 2.89 2.89 34.50 2.40
3468 11083 7.880195 AGATGCTTGGTATAGGTTGATACAATC 59.120 37.037 0.00 0.00 34.50 2.67
3469 11084 7.749666 AGATGCTTGGTATAGGTTGATACAAT 58.250 34.615 0.00 0.00 34.50 2.71
3470 11085 7.136822 AGATGCTTGGTATAGGTTGATACAA 57.863 36.000 0.00 0.00 34.50 2.41
3471 11086 6.747414 AGATGCTTGGTATAGGTTGATACA 57.253 37.500 0.00 0.00 34.50 2.29
3472 11087 9.555727 TTAAAGATGCTTGGTATAGGTTGATAC 57.444 33.333 0.00 0.00 0.00 2.24
3474 11089 9.474313 TTTTAAAGATGCTTGGTATAGGTTGAT 57.526 29.630 0.00 0.00 0.00 2.57
3475 11090 8.871629 TTTTAAAGATGCTTGGTATAGGTTGA 57.128 30.769 0.00 0.00 0.00 3.18
3483 11098 9.528489 AGGAGTAAATTTTAAAGATGCTTGGTA 57.472 29.630 0.00 0.00 0.00 3.25
3484 11099 8.422577 AGGAGTAAATTTTAAAGATGCTTGGT 57.577 30.769 0.00 0.00 0.00 3.67
3504 11119 8.974060 TTGTACTTCAAACAAAGATAAGGAGT 57.026 30.769 0.00 0.00 34.04 3.85
3523 11138 5.827666 CACCGGATTTTGAAGTTTTGTACT 58.172 37.500 9.46 0.00 39.32 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.