Multiple sequence alignment - TraesCS4A01G468100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G468100 chr4A 100.000 4881 0 0 1 4881 729953475 729958355 0.000000e+00 9014
1 TraesCS4A01G468100 chr4A 97.724 4087 59 8 1 4074 694824304 694820239 0.000000e+00 7001
2 TraesCS4A01G468100 chr4A 98.356 730 12 0 4152 4881 692066783 692066054 0.000000e+00 1282
3 TraesCS4A01G468100 chr4A 98.219 730 13 0 4152 4881 648931429 648930700 0.000000e+00 1277
4 TraesCS4A01G468100 chr4A 98.082 730 14 0 4152 4881 661940473 661941202 0.000000e+00 1271
5 TraesCS4A01G468100 chr4A 98.082 730 13 1 4152 4881 658246481 658247209 0.000000e+00 1269
6 TraesCS4A01G468100 chr5A 97.457 4089 69 9 1 4074 39427500 39423432 0.000000e+00 6942
7 TraesCS4A01G468100 chr4B 97.850 3954 60 7 68 4000 660510664 660506715 0.000000e+00 6809
8 TraesCS4A01G468100 chr7B 98.024 3340 51 6 748 4074 750490190 750486853 0.000000e+00 5788
9 TraesCS4A01G468100 chr7B 92.730 2311 124 23 1780 4074 472532803 472530521 0.000000e+00 3297
10 TraesCS4A01G468100 chr7B 94.430 395 3 2 1 395 750496491 750496116 1.510000e-164 590
11 TraesCS4A01G468100 chr7B 99.083 327 3 0 427 753 750495771 750495445 5.440000e-164 588
12 TraesCS4A01G468100 chr7B 98.969 97 1 0 4062 4158 60376919 60377015 1.810000e-39 174
13 TraesCS4A01G468100 chr2B 97.926 2652 42 4 1425 4064 51870197 51872847 0.000000e+00 4580
14 TraesCS4A01G468100 chr2B 97.311 818 21 1 4065 4881 18607616 18608433 0.000000e+00 1387
15 TraesCS4A01G468100 chr2B 92.174 115 7 2 4045 4158 53915540 53915653 1.410000e-35 161
16 TraesCS4A01G468100 chrUn 97.862 2385 39 7 1699 4074 292931840 292929459 0.000000e+00 4111
17 TraesCS4A01G468100 chrUn 97.820 2385 40 7 1699 4074 292948174 292945793 0.000000e+00 4106
18 TraesCS4A01G468100 chrUn 97.998 1049 19 1 68 1116 319702950 319703996 0.000000e+00 1820
19 TraesCS4A01G468100 chrUn 89.279 541 32 13 258 780 344971520 344970988 0.000000e+00 654
20 TraesCS4A01G468100 chrUn 89.615 260 11 2 1 260 344971807 344971564 2.840000e-82 316
21 TraesCS4A01G468100 chr1D 93.127 2357 123 21 1730 4074 443920219 443922548 0.000000e+00 3419
22 TraesCS4A01G468100 chr1D 97.015 134 4 0 1613 1746 443920075 443920208 4.920000e-55 226
23 TraesCS4A01G468100 chr5B 98.085 731 13 1 4152 4881 637651934 637651204 0.000000e+00 1271
24 TraesCS4A01G468100 chr5B 94.512 164 9 0 4065 4228 712453914 712453751 2.250000e-63 254
25 TraesCS4A01G468100 chr5B 98.000 100 2 0 4059 4158 28403163 28403064 1.810000e-39 174
26 TraesCS4A01G468100 chr5B 97.980 99 2 0 4060 4158 491296853 491296755 6.500000e-39 172
27 TraesCS4A01G468100 chr3B 98.082 730 14 0 4152 4881 19920218 19920947 0.000000e+00 1271
28 TraesCS4A01G468100 chr1B 98.082 730 13 1 4152 4881 626396267 626395539 0.000000e+00 1269
29 TraesCS4A01G468100 chr1B 85.526 228 17 2 1 228 52221095 52221306 1.770000e-54 224
30 TraesCS4A01G468100 chr1B 98.969 97 1 0 4062 4158 656122585 656122489 1.810000e-39 174
31 TraesCS4A01G468100 chr6B 97.945 730 15 0 4152 4881 662308152 662307423 0.000000e+00 1266
32 TraesCS4A01G468100 chr6B 98.000 100 2 0 4059 4158 181133816 181133915 1.810000e-39 174
33 TraesCS4A01G468100 chr6B 98.958 96 1 0 4063 4158 677636605 677636510 6.500000e-39 172
34 TraesCS4A01G468100 chr4D 89.780 636 37 14 258 873 500699530 500698903 0.000000e+00 789
35 TraesCS4A01G468100 chr4D 89.780 636 37 14 258 873 500712368 500712995 0.000000e+00 789
36 TraesCS4A01G468100 chr4D 89.615 260 11 2 1 260 500699817 500699574 2.840000e-82 316
37 TraesCS4A01G468100 chr4D 89.615 260 11 2 1 260 500712081 500712324 2.840000e-82 316
38 TraesCS4A01G468100 chr4D 89.691 97 9 1 821 917 24111213 24111308 6.630000e-24 122
39 TraesCS4A01G468100 chr2D 89.202 639 37 16 258 873 448440456 448439827 0.000000e+00 769
40 TraesCS4A01G468100 chr2D 89.615 260 11 2 1 260 448440743 448440500 2.840000e-82 316
41 TraesCS4A01G468100 chr5D 89.045 639 39 15 258 873 469813717 469814347 0.000000e+00 763
42 TraesCS4A01G468100 chr5D 89.615 260 9 4 1 260 469813432 469813673 1.020000e-81 315
43 TraesCS4A01G468100 chr7D 91.867 541 40 3 921 1461 605877323 605877859 0.000000e+00 752
44 TraesCS4A01G468100 chr7D 91.650 491 29 5 1460 1945 605877893 605878376 0.000000e+00 669
45 TraesCS4A01G468100 chr7D 91.831 355 20 4 568 921 605877032 605877378 2.040000e-133 486
46 TraesCS4A01G468100 chr7D 87.285 291 20 10 272 561 605876817 605877091 2.840000e-82 316
47 TraesCS4A01G468100 chr3D 87.976 499 35 12 394 873 601044012 601043520 2.550000e-157 566
48 TraesCS4A01G468100 chr3D 89.231 260 12 2 1 260 601044696 601044453 1.320000e-80 311
49 TraesCS4A01G468100 chr3D 92.308 143 5 3 258 396 601044409 601044269 1.070000e-46 198
50 TraesCS4A01G468100 chr3A 85.965 228 16 2 1 228 661059553 661059764 3.800000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G468100 chr4A 729953475 729958355 4880 False 9014.000000 9014 100.000000 1 4881 1 chr4A.!!$F3 4880
1 TraesCS4A01G468100 chr4A 694820239 694824304 4065 True 7001.000000 7001 97.724000 1 4074 1 chr4A.!!$R3 4073
2 TraesCS4A01G468100 chr4A 692066054 692066783 729 True 1282.000000 1282 98.356000 4152 4881 1 chr4A.!!$R2 729
3 TraesCS4A01G468100 chr4A 648930700 648931429 729 True 1277.000000 1277 98.219000 4152 4881 1 chr4A.!!$R1 729
4 TraesCS4A01G468100 chr4A 661940473 661941202 729 False 1271.000000 1271 98.082000 4152 4881 1 chr4A.!!$F2 729
5 TraesCS4A01G468100 chr4A 658246481 658247209 728 False 1269.000000 1269 98.082000 4152 4881 1 chr4A.!!$F1 729
6 TraesCS4A01G468100 chr5A 39423432 39427500 4068 True 6942.000000 6942 97.457000 1 4074 1 chr5A.!!$R1 4073
7 TraesCS4A01G468100 chr4B 660506715 660510664 3949 True 6809.000000 6809 97.850000 68 4000 1 chr4B.!!$R1 3932
8 TraesCS4A01G468100 chr7B 750486853 750490190 3337 True 5788.000000 5788 98.024000 748 4074 1 chr7B.!!$R2 3326
9 TraesCS4A01G468100 chr7B 472530521 472532803 2282 True 3297.000000 3297 92.730000 1780 4074 1 chr7B.!!$R1 2294
10 TraesCS4A01G468100 chr7B 750495445 750496491 1046 True 589.000000 590 96.756500 1 753 2 chr7B.!!$R3 752
11 TraesCS4A01G468100 chr2B 51870197 51872847 2650 False 4580.000000 4580 97.926000 1425 4064 1 chr2B.!!$F2 2639
12 TraesCS4A01G468100 chr2B 18607616 18608433 817 False 1387.000000 1387 97.311000 4065 4881 1 chr2B.!!$F1 816
13 TraesCS4A01G468100 chrUn 292929459 292931840 2381 True 4111.000000 4111 97.862000 1699 4074 1 chrUn.!!$R1 2375
14 TraesCS4A01G468100 chrUn 292945793 292948174 2381 True 4106.000000 4106 97.820000 1699 4074 1 chrUn.!!$R2 2375
15 TraesCS4A01G468100 chrUn 319702950 319703996 1046 False 1820.000000 1820 97.998000 68 1116 1 chrUn.!!$F1 1048
16 TraesCS4A01G468100 chrUn 344970988 344971807 819 True 485.000000 654 89.447000 1 780 2 chrUn.!!$R3 779
17 TraesCS4A01G468100 chr1D 443920075 443922548 2473 False 1822.500000 3419 95.071000 1613 4074 2 chr1D.!!$F1 2461
18 TraesCS4A01G468100 chr5B 637651204 637651934 730 True 1271.000000 1271 98.085000 4152 4881 1 chr5B.!!$R3 729
19 TraesCS4A01G468100 chr3B 19920218 19920947 729 False 1271.000000 1271 98.082000 4152 4881 1 chr3B.!!$F1 729
20 TraesCS4A01G468100 chr1B 626395539 626396267 728 True 1269.000000 1269 98.082000 4152 4881 1 chr1B.!!$R1 729
21 TraesCS4A01G468100 chr6B 662307423 662308152 729 True 1266.000000 1266 97.945000 4152 4881 1 chr6B.!!$R1 729
22 TraesCS4A01G468100 chr4D 500698903 500699817 914 True 552.500000 789 89.697500 1 873 2 chr4D.!!$R1 872
23 TraesCS4A01G468100 chr4D 500712081 500712995 914 False 552.500000 789 89.697500 1 873 2 chr4D.!!$F2 872
24 TraesCS4A01G468100 chr2D 448439827 448440743 916 True 542.500000 769 89.408500 1 873 2 chr2D.!!$R1 872
25 TraesCS4A01G468100 chr5D 469813432 469814347 915 False 539.000000 763 89.330000 1 873 2 chr5D.!!$F1 872
26 TraesCS4A01G468100 chr7D 605876817 605878376 1559 False 555.750000 752 90.658250 272 1945 4 chr7D.!!$F1 1673
27 TraesCS4A01G468100 chr3D 601043520 601044696 1176 True 358.333333 566 89.838333 1 873 3 chr3D.!!$R1 872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 1137 3.674997 TGGTCAGAGCAATAACAACCTC 58.325 45.455 0.0 0.0 0.0 3.85 F
1323 1708 1.673033 CCATCAGACCCTCAACGTGAC 60.673 57.143 0.0 0.0 0.0 3.67 F
3102 3575 1.464997 GCTTGCTTCCTGTTCCTAACG 59.535 52.381 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2685 3154 0.607489 CACAAGGTCCTCAGCCCAAG 60.607 60.0 0.0 0.0 0.00 3.61 R
3253 3726 4.709397 TCCCACACACTTCATCTTTGTTTT 59.291 37.5 0.0 0.0 0.00 2.43 R
4217 4701 0.609131 CGTGGATGCCTTTTGGTCCT 60.609 55.0 0.0 0.0 42.99 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.320277 CTCCCTTTGTTTTCCTCTCTGAAT 58.680 41.667 0.00 0.00 0.00 2.57
52 53 5.316987 TCCCTTTGTTTTCCTCTCTGAATC 58.683 41.667 0.00 0.00 0.00 2.52
53 54 5.073691 TCCCTTTGTTTTCCTCTCTGAATCT 59.926 40.000 0.00 0.00 0.00 2.40
54 55 5.182760 CCCTTTGTTTTCCTCTCTGAATCTG 59.817 44.000 0.00 0.00 0.00 2.90
55 56 5.182760 CCTTTGTTTTCCTCTCTGAATCTGG 59.817 44.000 0.00 0.00 0.00 3.86
56 57 4.982241 TGTTTTCCTCTCTGAATCTGGT 57.018 40.909 0.00 0.00 0.00 4.00
57 58 4.645535 TGTTTTCCTCTCTGAATCTGGTG 58.354 43.478 0.00 0.00 0.00 4.17
58 59 4.103153 TGTTTTCCTCTCTGAATCTGGTGT 59.897 41.667 0.00 0.00 0.00 4.16
59 60 4.982241 TTTCCTCTCTGAATCTGGTGTT 57.018 40.909 0.00 0.00 0.00 3.32
60 61 6.183361 TGTTTTCCTCTCTGAATCTGGTGTTA 60.183 38.462 0.00 0.00 0.00 2.41
61 62 5.667539 TTCCTCTCTGAATCTGGTGTTAG 57.332 43.478 0.00 0.00 0.00 2.34
62 63 4.026744 TCCTCTCTGAATCTGGTGTTAGG 58.973 47.826 0.00 0.00 0.00 2.69
63 64 3.772025 CCTCTCTGAATCTGGTGTTAGGT 59.228 47.826 0.00 0.00 0.00 3.08
64 65 4.223923 CCTCTCTGAATCTGGTGTTAGGTT 59.776 45.833 0.00 0.00 0.00 3.50
65 66 5.280215 CCTCTCTGAATCTGGTGTTAGGTTT 60.280 44.000 0.00 0.00 0.00 3.27
66 67 5.551233 TCTCTGAATCTGGTGTTAGGTTTG 58.449 41.667 0.00 0.00 0.00 2.93
386 439 7.678171 TCCCCTGATTAGTACTGATATATGCAA 59.322 37.037 5.39 0.00 0.00 4.08
586 966 6.648879 ATGCAGTACTTACACAAAATTGGT 57.351 33.333 0.00 0.00 0.00 3.67
757 1137 3.674997 TGGTCAGAGCAATAACAACCTC 58.325 45.455 0.00 0.00 0.00 3.85
776 1156 4.681978 GCGAGTGGCTTGACCGGT 62.682 66.667 6.92 6.92 43.94 5.28
966 1351 9.353999 CTTTAATGCCACTATAAAGTTGGTTTC 57.646 33.333 0.00 0.00 33.83 2.78
1032 1417 6.042552 TGGAAAAATGGAAAATTAGCCTGTCA 59.957 34.615 0.00 0.00 0.00 3.58
1262 1647 2.770164 ACCAATGAGAAGAAGGTCCG 57.230 50.000 0.00 0.00 0.00 4.79
1323 1708 1.673033 CCATCAGACCCTCAACGTGAC 60.673 57.143 0.00 0.00 0.00 3.67
1458 1877 6.485313 ACGATTTCAGTTTTGTAGGAACATGA 59.515 34.615 0.00 0.00 34.97 3.07
1833 2295 3.631145 AATCCGACAATACATGCATGC 57.369 42.857 26.53 11.82 0.00 4.06
2169 2631 2.689983 CACTTGACAAAAAGGACTGGCT 59.310 45.455 0.00 0.00 0.00 4.75
2303 2766 6.141685 CCTTTGTACATTTGTTGTTTACGCTC 59.858 38.462 0.00 0.00 39.87 5.03
2318 2781 8.725405 TGTTTACGCTCATTCATTATTTCCTA 57.275 30.769 0.00 0.00 0.00 2.94
2398 2867 2.743183 CGGGCGAGATTGGAGAAGATTT 60.743 50.000 0.00 0.00 0.00 2.17
2685 3154 2.294512 CAGGGACAAAGAGTTTTGCTCC 59.705 50.000 0.25 6.53 46.05 4.70
2966 3439 6.129179 TCTCTTTCAGGTTGAGTTGGAAAAT 58.871 36.000 0.00 0.00 0.00 1.82
3102 3575 1.464997 GCTTGCTTCCTGTTCCTAACG 59.535 52.381 0.00 0.00 0.00 3.18
3252 3725 6.200286 GCAAGACCAAATCATTGATGCATTAG 59.800 38.462 0.00 0.00 38.94 1.73
3253 3726 7.485810 CAAGACCAAATCATTGATGCATTAGA 58.514 34.615 0.00 0.00 38.94 2.10
3929 4410 7.646446 TGAATGAATGAGTTTCTGCATTTTG 57.354 32.000 0.00 0.00 35.05 2.44
4138 4621 2.473070 TCATGAACCGGGACTAATGGA 58.527 47.619 6.32 0.00 0.00 3.41
4139 4622 3.045634 TCATGAACCGGGACTAATGGAT 58.954 45.455 6.32 0.00 0.00 3.41
4148 4631 4.279169 CCGGGACTAATGGATCGTTACTAA 59.721 45.833 0.00 0.00 0.00 2.24
4149 4632 5.047519 CCGGGACTAATGGATCGTTACTAAT 60.048 44.000 0.00 0.00 0.00 1.73
4150 4633 6.151648 CCGGGACTAATGGATCGTTACTAATA 59.848 42.308 0.00 0.00 0.00 0.98
4521 5006 5.058008 CGAACAACAAGTTTTCGTATCATGC 59.942 40.000 15.48 0.00 41.51 4.06
4535 5020 1.314730 TCATGCATCCGACGCTACTA 58.685 50.000 0.00 0.00 0.00 1.82
4591 5076 9.403583 CTCTTAATTACAAACCCCTAGCATTTA 57.596 33.333 0.00 0.00 0.00 1.40
4832 5317 5.063438 GCTTACGCACTTCATATTGTCTTCA 59.937 40.000 0.00 0.00 35.78 3.02
4849 5334 2.109126 CAAGAGTAGCCCCGCTTGC 61.109 63.158 4.25 0.00 40.44 4.01
4864 5349 1.859998 GCTTGCTTTTCAAAGTCGCGT 60.860 47.619 5.77 0.00 38.28 6.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.775384 ACCAGACAAACCTAACACCAGA 59.225 45.455 0.00 0.00 0.00 3.86
52 53 2.878406 CACCAGACAAACCTAACACCAG 59.122 50.000 0.00 0.00 0.00 4.00
53 54 2.240160 ACACCAGACAAACCTAACACCA 59.760 45.455 0.00 0.00 0.00 4.17
54 55 2.927028 ACACCAGACAAACCTAACACC 58.073 47.619 0.00 0.00 0.00 4.16
55 56 4.514066 CCTAACACCAGACAAACCTAACAC 59.486 45.833 0.00 0.00 0.00 3.32
56 57 4.164604 ACCTAACACCAGACAAACCTAACA 59.835 41.667 0.00 0.00 0.00 2.41
57 58 4.711399 ACCTAACACCAGACAAACCTAAC 58.289 43.478 0.00 0.00 0.00 2.34
58 59 5.376756 AACCTAACACCAGACAAACCTAA 57.623 39.130 0.00 0.00 0.00 2.69
59 60 5.127491 CAAACCTAACACCAGACAAACCTA 58.873 41.667 0.00 0.00 0.00 3.08
60 61 3.945640 AACCTAACACCAGACAAACCT 57.054 42.857 0.00 0.00 0.00 3.50
61 62 3.697542 ACAAACCTAACACCAGACAAACC 59.302 43.478 0.00 0.00 0.00 3.27
62 63 4.668289 CACAAACCTAACACCAGACAAAC 58.332 43.478 0.00 0.00 0.00 2.93
63 64 3.129638 GCACAAACCTAACACCAGACAAA 59.870 43.478 0.00 0.00 0.00 2.83
64 65 2.685897 GCACAAACCTAACACCAGACAA 59.314 45.455 0.00 0.00 0.00 3.18
65 66 2.294074 GCACAAACCTAACACCAGACA 58.706 47.619 0.00 0.00 0.00 3.41
66 67 1.263217 CGCACAAACCTAACACCAGAC 59.737 52.381 0.00 0.00 0.00 3.51
386 439 5.074102 GGGGGCCCTAGTTTTGTATAACTAT 59.926 44.000 24.38 0.00 39.26 2.12
586 966 2.560981 TCAGAGTACAAGATCGTTGGCA 59.439 45.455 0.00 0.00 0.00 4.92
776 1156 8.421784 GTTTTACATGATGGAGGATACAGACTA 58.578 37.037 0.00 0.00 41.41 2.59
966 1351 6.256539 ACATGAATGTAAGAAGTATCAGCACG 59.743 38.462 0.00 0.00 39.68 5.34
1262 1647 3.395639 TCCTCGTTGAACACATACAACC 58.604 45.455 0.00 0.00 41.95 3.77
1323 1708 2.677199 CTGGTAATCGGTCCATCATCG 58.323 52.381 0.00 0.00 33.01 3.84
1458 1877 2.571653 TGACCAAGTAGGCTAAGCATGT 59.428 45.455 0.00 0.00 43.14 3.21
2169 2631 4.569653 CCCCACCATCCTTCTTGACATTAA 60.570 45.833 0.00 0.00 0.00 1.40
2303 2766 9.806203 TGTCTGCATTTTAGGAAATAATGAATG 57.194 29.630 0.00 0.00 33.78 2.67
2318 2781 6.273071 GGTACAAGAACTTTGTCTGCATTTT 58.727 36.000 0.00 0.00 34.11 1.82
2398 2867 6.777580 AGAAAATTTTCTTCAGACCAGCCTTA 59.222 34.615 24.62 0.00 44.70 2.69
2685 3154 0.607489 CACAAGGTCCTCAGCCCAAG 60.607 60.000 0.00 0.00 0.00 3.61
2966 3439 6.969366 CAACTCTGGTTGTTCATCAATTACA 58.031 36.000 0.00 0.00 45.42 2.41
3252 3725 5.043248 CCCACACACTTCATCTTTGTTTTC 58.957 41.667 0.00 0.00 0.00 2.29
3253 3726 4.709397 TCCCACACACTTCATCTTTGTTTT 59.291 37.500 0.00 0.00 0.00 2.43
3682 4155 9.543783 AGTAACGAGAAGATTCTAACTTGTTTT 57.456 29.630 21.05 13.00 37.73 2.43
3752 4226 7.509141 TTTCAAGATGATGCTTCTGTACAAA 57.491 32.000 0.00 0.00 0.00 2.83
3891 4370 9.809395 ACTCATTCATTCATCATTCCTATGATT 57.191 29.630 0.00 0.00 46.88 2.57
3929 4410 4.866486 GTCCATTCCATGCAAATCAAACTC 59.134 41.667 0.00 0.00 0.00 3.01
4007 4488 7.443879 TGATCTTGCAATGTAAAGTTCACAGTA 59.556 33.333 0.00 0.00 30.77 2.74
4050 4533 9.924650 TTTTCTACTAGTGAACATAAGAGGAAC 57.075 33.333 5.39 0.00 0.00 3.62
4138 4621 4.037208 CCACGTGGAGGTATTAGTAACGAT 59.963 45.833 31.31 0.00 37.39 3.73
4139 4622 3.378112 CCACGTGGAGGTATTAGTAACGA 59.622 47.826 31.31 0.00 37.39 3.85
4148 4631 2.040606 AGGGCCACGTGGAGGTAT 59.959 61.111 38.30 15.09 37.39 2.73
4149 4632 3.000819 CAGGGCCACGTGGAGGTA 61.001 66.667 38.30 0.00 37.39 3.08
4217 4701 0.609131 CGTGGATGCCTTTTGGTCCT 60.609 55.000 0.00 0.00 42.99 3.85
4591 5076 8.260114 GGAGAATACCATGTGGAAATTGAATTT 58.740 33.333 2.27 2.27 38.94 1.82
4594 5079 5.356751 CGGAGAATACCATGTGGAAATTGAA 59.643 40.000 5.96 0.00 38.94 2.69
4832 5317 1.842381 AAGCAAGCGGGGCTACTCTT 61.842 55.000 0.30 0.00 41.66 2.85
4849 5334 2.108700 CCACAACGCGACTTTGAAAAG 58.891 47.619 15.93 1.22 41.73 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.