Multiple sequence alignment - TraesCS4A01G467500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G467500 chr4A 100.000 4182 0 0 1 4182 729680028 729684209 0.000000e+00 7723.0
1 TraesCS4A01G467500 chr4A 90.505 1327 82 20 2884 4181 718929875 718928564 0.000000e+00 1712.0
2 TraesCS4A01G467500 chr4A 90.699 1301 92 10 2903 4182 729859572 729860864 0.000000e+00 1705.0
3 TraesCS4A01G467500 chr4A 90.630 1302 92 11 2903 4182 728431964 728430671 0.000000e+00 1701.0
4 TraesCS4A01G467500 chr4A 89.856 1321 103 16 2883 4182 729532345 729531035 0.000000e+00 1668.0
5 TraesCS4A01G467500 chr4A 91.557 912 76 1 965 1876 728458119 728457209 0.000000e+00 1256.0
6 TraesCS4A01G467500 chr4A 91.557 912 57 7 1986 2884 729533290 729532386 0.000000e+00 1240.0
7 TraesCS4A01G467500 chr4A 86.957 1104 89 23 3106 4182 729048580 729047505 0.000000e+00 1190.0
8 TraesCS4A01G467500 chr4A 87.939 912 105 4 965 1876 729742448 729743354 0.000000e+00 1070.0
9 TraesCS4A01G467500 chr4A 86.842 912 115 4 965 1876 729138840 729139746 0.000000e+00 1014.0
10 TraesCS4A01G467500 chr4A 86.630 920 93 14 1991 2884 728432943 728432028 0.000000e+00 990.0
11 TraesCS4A01G467500 chr4A 86.566 923 94 14 1988 2884 729858590 729859508 0.000000e+00 990.0
12 TraesCS4A01G467500 chr4A 86.711 903 94 11 2003 2884 729814539 729815436 0.000000e+00 979.0
13 TraesCS4A01G467500 chr4A 81.638 1209 152 37 495 1641 728434372 728433172 0.000000e+00 939.0
14 TraesCS4A01G467500 chr4A 82.124 1130 142 31 712 1810 718932071 718930971 0.000000e+00 913.0
15 TraesCS4A01G467500 chr4A 84.773 926 109 20 1967 2884 729049874 729048973 0.000000e+00 900.0
16 TraesCS4A01G467500 chr4A 84.385 935 121 17 1966 2884 729743334 729744259 0.000000e+00 894.0
17 TraesCS4A01G467500 chr4A 83.957 935 125 17 1966 2884 729139726 729140651 0.000000e+00 872.0
18 TraesCS4A01G467500 chr4A 89.779 587 54 5 3597 4182 729084742 729084161 0.000000e+00 747.0
19 TraesCS4A01G467500 chr4A 81.537 872 129 21 1026 1876 729534153 729533293 0.000000e+00 689.0
20 TraesCS4A01G467500 chr4A 89.978 449 36 2 1984 2424 728457209 728456762 4.690000e-159 571.0
21 TraesCS4A01G467500 chr4A 85.022 454 65 2 1188 1641 729857928 729858378 3.810000e-125 459.0
22 TraesCS4A01G467500 chr4A 91.756 279 18 1 2884 3157 729815477 729815755 2.360000e-102 383.0
23 TraesCS4A01G467500 chr4A 94.845 194 9 1 2883 3075 729048776 729048583 6.790000e-78 302.0
24 TraesCS4A01G467500 chr4A 81.217 378 38 18 474 835 728458725 728458365 1.480000e-69 274.0
25 TraesCS4A01G467500 chr4A 86.864 236 26 3 1639 1870 729050096 729049862 4.150000e-65 259.0
26 TraesCS4A01G467500 chr4A 88.500 200 11 5 498 686 718932328 718932130 9.040000e-57 231.0
27 TraesCS4A01G467500 chr4A 88.649 185 14 6 474 654 729138101 729138282 7.040000e-53 219.0
28 TraesCS4A01G467500 chr4A 79.130 230 31 11 564 783 729741996 729742218 4.360000e-30 143.0
29 TraesCS4A01G467500 chr4A 95.122 41 1 1 358 397 728434524 728434484 3.490000e-06 63.9
30 TraesCS4A01G467500 chr4A 95.000 40 1 1 359 397 729813914 729813953 1.260000e-05 62.1
31 TraesCS4A01G467500 chr7A 89.232 1328 69 29 2885 4182 9330484 9331767 0.000000e+00 1592.0
32 TraesCS4A01G467500 chr7A 81.075 1247 137 46 474 1641 9328082 9329308 0.000000e+00 904.0
33 TraesCS4A01G467500 chr7D 87.216 923 91 19 1982 2884 10482579 10481664 0.000000e+00 1026.0
34 TraesCS4A01G467500 chr7D 86.370 763 97 6 2122 2882 10036112 10036869 0.000000e+00 826.0
35 TraesCS4A01G467500 chr7D 91.254 606 50 3 3579 4182 10480941 10480337 0.000000e+00 822.0
36 TraesCS4A01G467500 chr7D 86.982 676 83 4 967 1641 10483505 10482834 0.000000e+00 756.0
37 TraesCS4A01G467500 chr7D 84.971 692 60 21 2903 3566 10481599 10480924 0.000000e+00 662.0
38 TraesCS4A01G467500 chr7D 87.411 564 70 1 965 1527 10035520 10036083 0.000000e+00 647.0
39 TraesCS4A01G467500 chr7D 81.877 309 49 5 3010 3318 10472737 10472436 1.930000e-63 254.0
40 TraesCS4A01G467500 chr7D 79.101 378 47 22 474 835 10484115 10483754 9.040000e-57 231.0
41 TraesCS4A01G467500 chr7D 84.716 229 33 2 1 227 136919985 136920213 1.170000e-55 228.0
42 TraesCS4A01G467500 chr7D 84.188 234 35 2 1 232 76460574 76460807 4.210000e-55 226.0
43 TraesCS4A01G467500 chr7D 88.950 181 15 4 478 653 10475451 10475271 7.040000e-53 219.0
44 TraesCS4A01G467500 chr7D 94.872 117 6 0 1873 1989 144501162 144501278 2.570000e-42 183.0
45 TraesCS4A01G467500 chr7B 85.345 232 33 1 1 231 22703205 22703436 5.400000e-59 239.0
46 TraesCS4A01G467500 chr7B 85.169 236 27 6 1 231 22826827 22827059 6.990000e-58 235.0
47 TraesCS4A01G467500 chr7B 84.549 233 34 2 1 231 22765515 22765747 3.250000e-56 230.0
48 TraesCS4A01G467500 chr7B 84.120 233 35 2 1 231 22999686 22999918 1.510000e-54 224.0
49 TraesCS4A01G467500 chr7B 83.691 233 36 2 1 231 22952118 22952350 7.040000e-53 219.0
50 TraesCS4A01G467500 chr7B 83.262 233 37 2 1 231 22886618 22886850 3.280000e-51 213.0
51 TraesCS4A01G467500 chr6B 82.700 237 34 7 1 234 712562260 712562492 1.970000e-48 204.0
52 TraesCS4A01G467500 chr5A 94.915 118 4 1 1873 1988 573562618 573562501 2.570000e-42 183.0
53 TraesCS4A01G467500 chr5A 96.330 109 4 0 1873 1981 537119785 537119677 3.320000e-41 180.0
54 TraesCS4A01G467500 chr2A 96.330 109 4 0 1872 1980 640305215 640305323 3.320000e-41 180.0
55 TraesCS4A01G467500 chr6D 96.296 108 4 0 1873 1980 68899901 68900008 1.190000e-40 178.0
56 TraesCS4A01G467500 chr4D 94.017 117 7 0 1873 1989 155576796 155576680 1.190000e-40 178.0
57 TraesCS4A01G467500 chr1A 96.296 108 4 0 1873 1980 427816356 427816463 1.190000e-40 178.0
58 TraesCS4A01G467500 chr3A 93.966 116 6 1 1873 1987 51447868 51447983 1.550000e-39 174.0
59 TraesCS4A01G467500 chr3A 94.690 113 5 1 1872 1984 91478228 91478339 1.550000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G467500 chr4A 729680028 729684209 4181 False 7723.000000 7723 100.000000 1 4182 1 chr4A.!!$F1 4181
1 TraesCS4A01G467500 chr4A 729531035 729534153 3118 True 1199.000000 1668 87.650000 1026 4182 3 chr4A.!!$R6 3156
2 TraesCS4A01G467500 chr4A 729857928 729860864 2936 False 1051.333333 1705 87.429000 1188 4182 3 chr4A.!!$F5 2994
3 TraesCS4A01G467500 chr4A 718928564 718932328 3764 True 952.000000 1712 87.043000 498 4181 3 chr4A.!!$R2 3683
4 TraesCS4A01G467500 chr4A 728430671 728434524 3853 True 923.475000 1701 88.505000 358 4182 4 chr4A.!!$R3 3824
5 TraesCS4A01G467500 chr4A 729084161 729084742 581 True 747.000000 747 89.779000 3597 4182 1 chr4A.!!$R1 585
6 TraesCS4A01G467500 chr4A 729741996 729744259 2263 False 702.333333 1070 83.818000 564 2884 3 chr4A.!!$F3 2320
7 TraesCS4A01G467500 chr4A 729138101 729140651 2550 False 701.666667 1014 86.482667 474 2884 3 chr4A.!!$F2 2410
8 TraesCS4A01G467500 chr4A 728456762 728458725 1963 True 700.333333 1256 87.584000 474 2424 3 chr4A.!!$R4 1950
9 TraesCS4A01G467500 chr4A 729047505 729050096 2591 True 662.750000 1190 88.359750 1639 4182 4 chr4A.!!$R5 2543
10 TraesCS4A01G467500 chr4A 729813914 729815755 1841 False 474.700000 979 91.155667 359 3157 3 chr4A.!!$F4 2798
11 TraesCS4A01G467500 chr7A 9328082 9331767 3685 False 1248.000000 1592 85.153500 474 4182 2 chr7A.!!$F1 3708
12 TraesCS4A01G467500 chr7D 10035520 10036869 1349 False 736.500000 826 86.890500 965 2882 2 chr7D.!!$F4 1917
13 TraesCS4A01G467500 chr7D 10480337 10484115 3778 True 699.400000 1026 85.904800 474 4182 5 chr7D.!!$R2 3708
14 TraesCS4A01G467500 chr7D 10472436 10475451 3015 True 236.500000 254 85.413500 478 3318 2 chr7D.!!$R1 2840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 331 0.030638 CCACGGAAAGGCAAACACAG 59.969 55.0 0.0 0.0 0.0 3.66 F
331 332 0.030638 CACGGAAAGGCAAACACAGG 59.969 55.0 0.0 0.0 0.0 4.00 F
415 416 0.034059 CAACTCCGCAGACTCCAAGT 59.966 55.0 0.0 0.0 0.0 3.16 F
1882 2566 0.106619 AGCGGTACCTACTCCCTCTG 60.107 60.0 10.9 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2771 0.248215 CTTCGTGAATGATTGCCCGC 60.248 55.00 0.0 0.0 0.0 6.13 R
2100 2808 1.656652 CGGTGGGATAAGCAGTTCAG 58.343 55.00 0.0 0.0 0.0 3.02 R
2224 2936 9.851686 AATATGCTGTTGGTGAAGATAATCTAA 57.148 29.63 0.0 0.0 0.0 2.10 R
3325 4285 0.098728 CGTCCAATTTGCCATCGTCC 59.901 55.00 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.314740 TGGCATGTCTGGTTTGTTAAAC 57.685 40.909 0.00 0.00 40.65 2.01
22 23 3.957497 TGGCATGTCTGGTTTGTTAAACT 59.043 39.130 0.00 0.00 41.14 2.66
23 24 5.133941 TGGCATGTCTGGTTTGTTAAACTA 58.866 37.500 0.00 0.00 41.14 2.24
24 25 5.772672 TGGCATGTCTGGTTTGTTAAACTAT 59.227 36.000 0.00 0.00 41.14 2.12
25 26 6.092748 GGCATGTCTGGTTTGTTAAACTATG 58.907 40.000 4.65 0.00 41.14 2.23
26 27 6.072175 GGCATGTCTGGTTTGTTAAACTATGA 60.072 38.462 4.65 0.00 41.14 2.15
27 28 7.362920 GGCATGTCTGGTTTGTTAAACTATGAT 60.363 37.037 4.65 0.00 41.14 2.45
28 29 8.028938 GCATGTCTGGTTTGTTAAACTATGATT 58.971 33.333 4.65 0.00 41.14 2.57
29 30 9.912634 CATGTCTGGTTTGTTAAACTATGATTT 57.087 29.630 4.65 0.00 41.14 2.17
30 31 9.912634 ATGTCTGGTTTGTTAAACTATGATTTG 57.087 29.630 4.65 0.00 41.14 2.32
31 32 7.865385 TGTCTGGTTTGTTAAACTATGATTTGC 59.135 33.333 4.65 0.00 41.14 3.68
32 33 8.082242 GTCTGGTTTGTTAAACTATGATTTGCT 58.918 33.333 4.65 0.00 41.14 3.91
33 34 8.637986 TCTGGTTTGTTAAACTATGATTTGCTT 58.362 29.630 4.65 0.00 41.14 3.91
34 35 9.260002 CTGGTTTGTTAAACTATGATTTGCTTT 57.740 29.630 4.65 0.00 41.14 3.51
35 36 9.606631 TGGTTTGTTAAACTATGATTTGCTTTT 57.393 25.926 4.65 0.00 41.14 2.27
59 60 8.941127 TTTTTGTTTCGAACTTTTGAATTTGG 57.059 26.923 0.00 0.00 31.03 3.28
60 61 7.891183 TTTGTTTCGAACTTTTGAATTTGGA 57.109 28.000 0.00 0.00 31.03 3.53
61 62 6.879188 TGTTTCGAACTTTTGAATTTGGAC 57.121 33.333 0.00 0.00 31.03 4.02
62 63 6.390721 TGTTTCGAACTTTTGAATTTGGACA 58.609 32.000 0.00 0.00 31.03 4.02
63 64 6.868864 TGTTTCGAACTTTTGAATTTGGACAA 59.131 30.769 0.00 0.00 31.03 3.18
64 65 7.547370 TGTTTCGAACTTTTGAATTTGGACAAT 59.453 29.630 0.00 0.00 31.03 2.71
65 66 8.387354 GTTTCGAACTTTTGAATTTGGACAATT 58.613 29.630 0.00 0.00 31.03 2.32
66 67 8.485976 TTCGAACTTTTGAATTTGGACAATTT 57.514 26.923 0.00 0.00 0.00 1.82
67 68 7.904094 TCGAACTTTTGAATTTGGACAATTTG 58.096 30.769 0.00 0.00 0.00 2.32
68 69 7.547370 TCGAACTTTTGAATTTGGACAATTTGT 59.453 29.630 0.63 0.63 0.00 2.83
69 70 8.812329 CGAACTTTTGAATTTGGACAATTTGTA 58.188 29.630 1.15 0.00 0.00 2.41
72 73 8.977505 ACTTTTGAATTTGGACAATTTGTATCG 58.022 29.630 1.15 0.00 0.00 2.92
73 74 8.879342 TTTTGAATTTGGACAATTTGTATCGT 57.121 26.923 1.15 0.00 0.00 3.73
74 75 9.967346 TTTTGAATTTGGACAATTTGTATCGTA 57.033 25.926 1.15 0.00 0.00 3.43
76 77 9.566530 TTGAATTTGGACAATTTGTATCGTATG 57.433 29.630 1.15 0.00 0.00 2.39
77 78 8.951243 TGAATTTGGACAATTTGTATCGTATGA 58.049 29.630 1.15 0.00 0.00 2.15
78 79 9.950680 GAATTTGGACAATTTGTATCGTATGAT 57.049 29.630 1.15 2.37 38.67 2.45
79 80 9.950680 AATTTGGACAATTTGTATCGTATGATC 57.049 29.630 1.15 0.00 35.99 2.92
80 81 6.763303 TGGACAATTTGTATCGTATGATCG 57.237 37.500 1.15 0.00 35.99 3.69
81 82 6.508777 TGGACAATTTGTATCGTATGATCGA 58.491 36.000 1.15 0.00 43.86 3.59
82 83 6.419710 TGGACAATTTGTATCGTATGATCGAC 59.580 38.462 1.15 0.00 42.56 4.20
83 84 6.398621 GGACAATTTGTATCGTATGATCGACG 60.399 42.308 12.46 12.46 42.56 5.12
84 85 5.975344 ACAATTTGTATCGTATGATCGACGT 59.025 36.000 16.71 0.00 42.56 4.34
85 86 6.075046 ACAATTTGTATCGTATGATCGACGTG 60.075 38.462 16.71 9.46 42.56 4.49
86 87 2.912366 TGTATCGTATGATCGACGTGC 58.088 47.619 16.71 10.09 42.56 5.34
87 88 2.288458 TGTATCGTATGATCGACGTGCA 59.712 45.455 16.71 11.92 42.56 4.57
88 89 2.706555 ATCGTATGATCGACGTGCAT 57.293 45.000 16.71 9.41 42.56 3.96
89 90 3.824414 ATCGTATGATCGACGTGCATA 57.176 42.857 16.71 1.73 42.56 3.14
90 91 3.612472 TCGTATGATCGACGTGCATAA 57.388 42.857 16.71 0.00 41.11 1.90
91 92 3.954999 TCGTATGATCGACGTGCATAAA 58.045 40.909 16.71 4.18 41.11 1.40
92 93 3.972502 TCGTATGATCGACGTGCATAAAG 59.027 43.478 16.71 9.99 41.11 1.85
93 94 3.729217 CGTATGATCGACGTGCATAAAGT 59.271 43.478 10.87 0.00 35.58 2.66
94 95 4.374013 CGTATGATCGACGTGCATAAAGTG 60.374 45.833 10.87 3.04 35.58 3.16
108 109 5.840243 CATAAAGTGCATGGATTTGAGGA 57.160 39.130 0.00 0.00 0.00 3.71
109 110 6.401047 CATAAAGTGCATGGATTTGAGGAT 57.599 37.500 0.00 0.00 0.00 3.24
110 111 4.996788 AAAGTGCATGGATTTGAGGATC 57.003 40.909 0.00 0.00 0.00 3.36
111 112 2.569059 AGTGCATGGATTTGAGGATCG 58.431 47.619 0.00 0.00 38.61 3.69
112 113 1.605710 GTGCATGGATTTGAGGATCGG 59.394 52.381 0.00 0.00 38.61 4.18
113 114 1.490069 TGCATGGATTTGAGGATCGGA 59.510 47.619 0.00 0.00 38.61 4.55
114 115 2.092484 TGCATGGATTTGAGGATCGGAA 60.092 45.455 0.00 0.00 38.61 4.30
115 116 3.152341 GCATGGATTTGAGGATCGGAAT 58.848 45.455 0.00 0.00 38.61 3.01
116 117 3.571401 GCATGGATTTGAGGATCGGAATT 59.429 43.478 0.00 0.00 38.61 2.17
117 118 4.038402 GCATGGATTTGAGGATCGGAATTT 59.962 41.667 0.00 0.00 38.61 1.82
118 119 5.526115 CATGGATTTGAGGATCGGAATTTG 58.474 41.667 0.00 0.00 38.61 2.32
119 120 4.854173 TGGATTTGAGGATCGGAATTTGA 58.146 39.130 0.00 0.00 38.61 2.69
120 121 4.883585 TGGATTTGAGGATCGGAATTTGAG 59.116 41.667 0.00 0.00 38.61 3.02
121 122 4.276926 GGATTTGAGGATCGGAATTTGAGG 59.723 45.833 0.00 0.00 38.61 3.86
122 123 4.301072 TTTGAGGATCGGAATTTGAGGT 57.699 40.909 0.00 0.00 38.61 3.85
123 124 5.429681 TTTGAGGATCGGAATTTGAGGTA 57.570 39.130 0.00 0.00 38.61 3.08
124 125 5.630415 TTGAGGATCGGAATTTGAGGTAT 57.370 39.130 0.00 0.00 38.61 2.73
125 126 4.960938 TGAGGATCGGAATTTGAGGTATG 58.039 43.478 0.00 0.00 38.61 2.39
126 127 4.408921 TGAGGATCGGAATTTGAGGTATGT 59.591 41.667 0.00 0.00 38.61 2.29
127 128 4.708177 AGGATCGGAATTTGAGGTATGTG 58.292 43.478 0.00 0.00 0.00 3.21
128 129 3.815401 GGATCGGAATTTGAGGTATGTGG 59.185 47.826 0.00 0.00 0.00 4.17
129 130 4.444306 GGATCGGAATTTGAGGTATGTGGA 60.444 45.833 0.00 0.00 0.00 4.02
130 131 4.771114 TCGGAATTTGAGGTATGTGGAT 57.229 40.909 0.00 0.00 0.00 3.41
131 132 5.880164 TCGGAATTTGAGGTATGTGGATA 57.120 39.130 0.00 0.00 0.00 2.59
132 133 6.433847 TCGGAATTTGAGGTATGTGGATAT 57.566 37.500 0.00 0.00 0.00 1.63
133 134 6.230472 TCGGAATTTGAGGTATGTGGATATG 58.770 40.000 0.00 0.00 0.00 1.78
134 135 5.106555 CGGAATTTGAGGTATGTGGATATGC 60.107 44.000 0.00 0.00 0.00 3.14
135 136 5.106555 GGAATTTGAGGTATGTGGATATGCG 60.107 44.000 0.00 0.00 0.00 4.73
136 137 3.401033 TTGAGGTATGTGGATATGCGG 57.599 47.619 0.00 0.00 0.00 5.69
137 138 1.001974 TGAGGTATGTGGATATGCGGC 59.998 52.381 0.00 0.00 0.00 6.53
138 139 0.037326 AGGTATGTGGATATGCGGCG 60.037 55.000 0.51 0.51 0.00 6.46
139 140 1.635663 GGTATGTGGATATGCGGCGC 61.636 60.000 27.44 27.44 0.00 6.53
140 141 0.948623 GTATGTGGATATGCGGCGCA 60.949 55.000 38.09 38.09 44.86 6.09
141 142 0.250081 TATGTGGATATGCGGCGCAA 60.250 50.000 39.46 26.50 43.62 4.85
142 143 1.785041 ATGTGGATATGCGGCGCAAC 61.785 55.000 39.46 30.02 43.62 4.17
143 144 2.124942 TGGATATGCGGCGCAACA 60.125 55.556 39.46 29.01 43.62 3.33
144 145 1.525765 TGGATATGCGGCGCAACAT 60.526 52.632 39.46 31.74 43.62 2.71
145 146 0.250081 TGGATATGCGGCGCAACATA 60.250 50.000 39.46 26.39 43.62 2.29
146 147 1.086696 GGATATGCGGCGCAACATAT 58.913 50.000 39.46 29.77 43.62 1.78
147 148 1.202065 GGATATGCGGCGCAACATATG 60.202 52.381 39.46 0.00 43.62 1.78
148 149 1.731709 GATATGCGGCGCAACATATGA 59.268 47.619 39.46 17.37 43.62 2.15
149 150 1.587547 TATGCGGCGCAACATATGAA 58.412 45.000 39.46 12.52 43.62 2.57
150 151 0.308684 ATGCGGCGCAACATATGAAG 59.691 50.000 39.46 2.20 43.62 3.02
151 152 1.009675 GCGGCGCAACATATGAAGG 60.010 57.895 29.21 0.00 0.00 3.46
152 153 1.436195 GCGGCGCAACATATGAAGGA 61.436 55.000 29.21 0.00 0.00 3.36
153 154 0.304705 CGGCGCAACATATGAAGGAC 59.695 55.000 10.83 0.00 0.00 3.85
154 155 0.663153 GGCGCAACATATGAAGGACC 59.337 55.000 10.83 1.49 0.00 4.46
155 156 0.304705 GCGCAACATATGAAGGACCG 59.695 55.000 10.38 4.45 0.00 4.79
156 157 0.937304 CGCAACATATGAAGGACCGG 59.063 55.000 10.38 0.00 0.00 5.28
157 158 0.663153 GCAACATATGAAGGACCGGC 59.337 55.000 10.38 0.00 0.00 6.13
158 159 0.937304 CAACATATGAAGGACCGGCG 59.063 55.000 10.38 0.00 0.00 6.46
159 160 0.179056 AACATATGAAGGACCGGCGG 60.179 55.000 27.06 27.06 0.00 6.13
160 161 1.301716 CATATGAAGGACCGGCGGG 60.302 63.158 31.78 12.53 40.11 6.13
161 162 1.458777 ATATGAAGGACCGGCGGGA 60.459 57.895 31.78 6.69 36.97 5.14
162 163 1.472662 ATATGAAGGACCGGCGGGAG 61.473 60.000 31.78 5.33 36.97 4.30
175 176 2.665777 CGGGAGCTGTACATGAACG 58.334 57.895 0.00 0.00 0.00 3.95
176 177 1.421410 CGGGAGCTGTACATGAACGC 61.421 60.000 0.00 0.00 0.00 4.84
177 178 1.421410 GGGAGCTGTACATGAACGCG 61.421 60.000 3.53 3.53 0.00 6.01
178 179 1.345176 GAGCTGTACATGAACGCGC 59.655 57.895 5.73 0.00 0.00 6.86
179 180 2.025359 GAGCTGTACATGAACGCGCC 62.025 60.000 5.73 0.00 0.00 6.53
180 181 3.089784 CTGTACATGAACGCGCCC 58.910 61.111 5.73 0.00 0.00 6.13
181 182 1.739929 CTGTACATGAACGCGCCCA 60.740 57.895 5.73 4.39 0.00 5.36
182 183 1.078778 TGTACATGAACGCGCCCAT 60.079 52.632 5.73 7.06 0.00 4.00
183 184 1.351707 GTACATGAACGCGCCCATG 59.648 57.895 28.42 28.42 44.12 3.66
184 185 1.817520 TACATGAACGCGCCCATGG 60.818 57.895 31.16 19.64 43.16 3.66
185 186 3.891400 CATGAACGCGCCCATGGG 61.891 66.667 27.87 27.87 37.19 4.00
195 196 3.077907 CCCATGGGCGTATAGGGG 58.922 66.667 20.41 0.00 35.83 4.79
196 197 2.351276 CCATGGGCGTATAGGGGC 59.649 66.667 2.85 0.00 0.00 5.80
201 202 3.001406 GGCGTATAGGGGCCGGAT 61.001 66.667 5.05 0.00 39.93 4.18
202 203 2.590114 GGCGTATAGGGGCCGGATT 61.590 63.158 5.05 0.00 39.93 3.01
203 204 1.373812 GCGTATAGGGGCCGGATTT 59.626 57.895 5.05 0.00 0.00 2.17
204 205 0.953960 GCGTATAGGGGCCGGATTTG 60.954 60.000 5.05 0.00 0.00 2.32
205 206 0.953960 CGTATAGGGGCCGGATTTGC 60.954 60.000 5.05 0.00 0.00 3.68
212 213 2.885113 GCCGGATTTGCCAAGTCC 59.115 61.111 5.05 8.84 35.94 3.85
215 216 4.415783 GGATTTGCCAAGTCCGGT 57.584 55.556 2.98 0.00 36.34 5.28
216 217 2.653557 GGATTTGCCAAGTCCGGTT 58.346 52.632 2.98 0.00 36.34 4.44
217 218 0.243636 GGATTTGCCAAGTCCGGTTG 59.756 55.000 2.98 0.00 36.34 3.77
218 219 0.958822 GATTTGCCAAGTCCGGTTGT 59.041 50.000 0.00 0.00 0.00 3.32
219 220 2.156098 GATTTGCCAAGTCCGGTTGTA 58.844 47.619 0.00 0.00 0.00 2.41
220 221 1.600023 TTTGCCAAGTCCGGTTGTAG 58.400 50.000 0.00 0.00 0.00 2.74
221 222 0.759959 TTGCCAAGTCCGGTTGTAGA 59.240 50.000 0.00 0.00 0.00 2.59
222 223 0.034337 TGCCAAGTCCGGTTGTAGAC 59.966 55.000 0.00 0.00 0.00 2.59
223 224 1.012486 GCCAAGTCCGGTTGTAGACG 61.012 60.000 0.00 0.00 38.08 4.18
224 225 1.012486 CCAAGTCCGGTTGTAGACGC 61.012 60.000 0.00 0.00 38.08 5.19
225 226 0.038526 CAAGTCCGGTTGTAGACGCT 60.039 55.000 0.00 0.00 38.08 5.07
226 227 0.243095 AAGTCCGGTTGTAGACGCTC 59.757 55.000 0.00 0.00 38.08 5.03
227 228 0.608582 AGTCCGGTTGTAGACGCTCT 60.609 55.000 0.00 0.00 38.08 4.09
228 229 1.089920 GTCCGGTTGTAGACGCTCTA 58.910 55.000 0.00 0.00 0.00 2.43
229 230 1.470098 GTCCGGTTGTAGACGCTCTAA 59.530 52.381 0.00 0.00 29.58 2.10
230 231 1.741706 TCCGGTTGTAGACGCTCTAAG 59.258 52.381 0.00 0.00 29.58 2.18
231 232 1.741706 CCGGTTGTAGACGCTCTAAGA 59.258 52.381 0.00 0.00 29.58 2.10
232 233 2.358267 CCGGTTGTAGACGCTCTAAGAT 59.642 50.000 0.00 0.00 29.58 2.40
233 234 3.364062 CGGTTGTAGACGCTCTAAGATG 58.636 50.000 0.00 0.00 29.58 2.90
234 235 3.117046 GGTTGTAGACGCTCTAAGATGC 58.883 50.000 0.00 0.00 29.58 3.91
235 236 3.428999 GGTTGTAGACGCTCTAAGATGCA 60.429 47.826 0.00 0.00 29.58 3.96
236 237 3.422417 TGTAGACGCTCTAAGATGCAC 57.578 47.619 0.00 0.00 29.58 4.57
237 238 2.099263 TGTAGACGCTCTAAGATGCACC 59.901 50.000 0.00 0.00 29.58 5.01
238 239 1.479709 AGACGCTCTAAGATGCACCT 58.520 50.000 0.00 0.00 0.00 4.00
239 240 2.656002 AGACGCTCTAAGATGCACCTA 58.344 47.619 0.00 0.00 0.00 3.08
240 241 2.621055 AGACGCTCTAAGATGCACCTAG 59.379 50.000 0.00 0.00 0.00 3.02
241 242 2.619177 GACGCTCTAAGATGCACCTAGA 59.381 50.000 0.00 0.00 0.00 2.43
242 243 2.621055 ACGCTCTAAGATGCACCTAGAG 59.379 50.000 18.06 18.06 37.80 2.43
243 244 2.881513 CGCTCTAAGATGCACCTAGAGA 59.118 50.000 23.26 11.18 37.13 3.10
244 245 3.316588 CGCTCTAAGATGCACCTAGAGAA 59.683 47.826 23.26 0.00 37.13 2.87
245 246 4.556501 CGCTCTAAGATGCACCTAGAGAAG 60.557 50.000 23.26 15.54 37.13 2.85
246 247 4.582656 GCTCTAAGATGCACCTAGAGAAGA 59.417 45.833 23.26 5.26 37.13 2.87
247 248 5.278463 GCTCTAAGATGCACCTAGAGAAGAG 60.278 48.000 23.26 13.23 37.13 2.85
248 249 5.761205 TCTAAGATGCACCTAGAGAAGAGT 58.239 41.667 0.00 0.00 0.00 3.24
249 250 6.901300 TCTAAGATGCACCTAGAGAAGAGTA 58.099 40.000 0.00 0.00 0.00 2.59
250 251 7.347252 TCTAAGATGCACCTAGAGAAGAGTAA 58.653 38.462 0.00 0.00 0.00 2.24
251 252 6.859112 AAGATGCACCTAGAGAAGAGTAAA 57.141 37.500 0.00 0.00 0.00 2.01
252 253 7.430760 AAGATGCACCTAGAGAAGAGTAAAT 57.569 36.000 0.00 0.00 0.00 1.40
253 254 8.540507 AAGATGCACCTAGAGAAGAGTAAATA 57.459 34.615 0.00 0.00 0.00 1.40
254 255 8.540507 AGATGCACCTAGAGAAGAGTAAATAA 57.459 34.615 0.00 0.00 0.00 1.40
255 256 8.982723 AGATGCACCTAGAGAAGAGTAAATAAA 58.017 33.333 0.00 0.00 0.00 1.40
256 257 9.601217 GATGCACCTAGAGAAGAGTAAATAAAA 57.399 33.333 0.00 0.00 0.00 1.52
258 259 9.959721 TGCACCTAGAGAAGAGTAAATAAAATT 57.040 29.630 0.00 0.00 0.00 1.82
293 294 6.836577 TTTTTGCGAGGTAATTTCCAAAAG 57.163 33.333 3.73 0.00 34.78 2.27
294 295 3.569250 TGCGAGGTAATTTCCAAAAGC 57.431 42.857 3.73 4.00 0.00 3.51
295 296 2.887783 TGCGAGGTAATTTCCAAAAGCA 59.112 40.909 3.73 6.35 0.00 3.91
296 297 3.509575 TGCGAGGTAATTTCCAAAAGCAT 59.490 39.130 3.73 0.00 0.00 3.79
297 298 4.021544 TGCGAGGTAATTTCCAAAAGCATT 60.022 37.500 3.73 0.00 0.00 3.56
298 299 4.929211 GCGAGGTAATTTCCAAAAGCATTT 59.071 37.500 3.73 0.00 42.41 2.32
299 300 5.163963 GCGAGGTAATTTCCAAAAGCATTTG 60.164 40.000 7.43 7.43 44.50 2.32
310 311 4.403137 GCATTTGGCTCACGCGCA 62.403 61.111 5.73 0.00 40.25 6.09
311 312 2.502510 CATTTGGCTCACGCGCAC 60.503 61.111 5.73 0.00 36.88 5.34
312 313 3.737172 ATTTGGCTCACGCGCACC 61.737 61.111 5.73 2.67 36.88 5.01
319 320 4.893601 TCACGCGCACCACGGAAA 62.894 61.111 5.73 0.00 43.93 3.13
320 321 4.368808 CACGCGCACCACGGAAAG 62.369 66.667 5.73 0.00 43.93 2.62
324 325 3.283684 CGCACCACGGAAAGGCAA 61.284 61.111 0.00 0.00 38.44 4.52
325 326 2.840066 CGCACCACGGAAAGGCAAA 61.840 57.895 0.00 0.00 38.44 3.68
326 327 1.299850 GCACCACGGAAAGGCAAAC 60.300 57.895 0.00 0.00 0.00 2.93
327 328 2.010582 GCACCACGGAAAGGCAAACA 62.011 55.000 0.00 0.00 0.00 2.83
328 329 0.248866 CACCACGGAAAGGCAAACAC 60.249 55.000 0.00 0.00 0.00 3.32
329 330 0.681564 ACCACGGAAAGGCAAACACA 60.682 50.000 0.00 0.00 0.00 3.72
330 331 0.030638 CCACGGAAAGGCAAACACAG 59.969 55.000 0.00 0.00 0.00 3.66
331 332 0.030638 CACGGAAAGGCAAACACAGG 59.969 55.000 0.00 0.00 0.00 4.00
332 333 1.007387 CGGAAAGGCAAACACAGGC 60.007 57.895 0.00 0.00 0.00 4.85
333 334 1.007387 GGAAAGGCAAACACAGGCG 60.007 57.895 0.00 0.00 36.55 5.52
334 335 1.007387 GAAAGGCAAACACAGGCGG 60.007 57.895 0.00 0.00 36.55 6.13
335 336 1.452145 GAAAGGCAAACACAGGCGGA 61.452 55.000 0.00 0.00 36.55 5.54
336 337 1.455383 AAAGGCAAACACAGGCGGAG 61.455 55.000 0.00 0.00 36.55 4.63
337 338 2.594592 GGCAAACACAGGCGGAGT 60.595 61.111 0.00 0.00 0.00 3.85
338 339 2.617274 GGCAAACACAGGCGGAGTC 61.617 63.158 0.00 0.00 0.00 3.36
339 340 1.891919 GCAAACACAGGCGGAGTCA 60.892 57.895 0.00 0.00 0.00 3.41
340 341 1.941812 CAAACACAGGCGGAGTCAC 59.058 57.895 0.00 0.00 0.00 3.67
341 342 1.594293 AAACACAGGCGGAGTCACG 60.594 57.895 0.00 0.00 0.00 4.35
342 343 2.989055 AAACACAGGCGGAGTCACGG 62.989 60.000 0.00 0.00 0.00 4.94
343 344 3.680786 CACAGGCGGAGTCACGGA 61.681 66.667 0.00 0.00 0.00 4.69
344 345 3.681835 ACAGGCGGAGTCACGGAC 61.682 66.667 0.00 0.00 0.00 4.79
345 346 4.436998 CAGGCGGAGTCACGGACC 62.437 72.222 0.00 0.00 32.18 4.46
346 347 4.988716 AGGCGGAGTCACGGACCA 62.989 66.667 0.00 0.00 32.18 4.02
347 348 3.771160 GGCGGAGTCACGGACCAT 61.771 66.667 0.00 0.00 32.18 3.55
348 349 2.509336 GCGGAGTCACGGACCATG 60.509 66.667 0.00 0.00 32.18 3.66
349 350 3.001902 GCGGAGTCACGGACCATGA 62.002 63.158 0.00 0.00 32.18 3.07
350 351 1.589630 CGGAGTCACGGACCATGAA 59.410 57.895 0.00 0.00 32.18 2.57
351 352 0.175760 CGGAGTCACGGACCATGAAT 59.824 55.000 0.00 0.00 32.18 2.57
352 353 1.802880 CGGAGTCACGGACCATGAATC 60.803 57.143 9.43 9.43 39.79 2.52
353 354 1.207089 GGAGTCACGGACCATGAATCA 59.793 52.381 18.55 0.00 41.75 2.57
354 355 2.158900 GGAGTCACGGACCATGAATCAT 60.159 50.000 18.55 0.00 41.75 2.45
355 356 3.535561 GAGTCACGGACCATGAATCATT 58.464 45.455 12.78 0.00 40.15 2.57
356 357 3.273434 AGTCACGGACCATGAATCATTG 58.727 45.455 0.00 0.00 32.18 2.82
357 358 2.355756 GTCACGGACCATGAATCATTGG 59.644 50.000 0.00 9.22 0.00 3.16
358 359 2.238395 TCACGGACCATGAATCATTGGA 59.762 45.455 15.28 0.00 0.00 3.53
359 360 2.615447 CACGGACCATGAATCATTGGAG 59.385 50.000 15.28 9.91 0.00 3.86
360 361 2.239654 ACGGACCATGAATCATTGGAGT 59.760 45.455 15.28 10.34 0.00 3.85
361 362 2.615447 CGGACCATGAATCATTGGAGTG 59.385 50.000 15.28 0.00 0.00 3.51
362 363 2.954318 GGACCATGAATCATTGGAGTGG 59.046 50.000 15.28 7.53 0.00 4.00
363 364 2.360165 GACCATGAATCATTGGAGTGGC 59.640 50.000 15.28 0.00 0.00 5.01
364 365 1.335810 CCATGAATCATTGGAGTGGCG 59.664 52.381 0.00 0.00 0.00 5.69
365 366 2.019249 CATGAATCATTGGAGTGGCGT 58.981 47.619 0.00 0.00 0.00 5.68
397 398 3.492656 CGTGGTTTCTTTCTCCAGTCTCA 60.493 47.826 0.00 0.00 31.54 3.27
398 399 4.451900 GTGGTTTCTTTCTCCAGTCTCAA 58.548 43.478 0.00 0.00 31.54 3.02
400 401 4.164221 TGGTTTCTTTCTCCAGTCTCAACT 59.836 41.667 0.00 0.00 35.60 3.16
401 402 4.752604 GGTTTCTTTCTCCAGTCTCAACTC 59.247 45.833 0.00 0.00 31.71 3.01
402 403 4.608948 TTCTTTCTCCAGTCTCAACTCC 57.391 45.455 0.00 0.00 31.71 3.85
403 404 2.558795 TCTTTCTCCAGTCTCAACTCCG 59.441 50.000 0.00 0.00 31.71 4.63
404 405 0.603569 TTCTCCAGTCTCAACTCCGC 59.396 55.000 0.00 0.00 31.71 5.54
405 406 0.539669 TCTCCAGTCTCAACTCCGCA 60.540 55.000 0.00 0.00 31.71 5.69
406 407 0.108898 CTCCAGTCTCAACTCCGCAG 60.109 60.000 0.00 0.00 31.71 5.18
407 408 0.539669 TCCAGTCTCAACTCCGCAGA 60.540 55.000 0.00 0.00 31.71 4.26
408 409 0.389166 CCAGTCTCAACTCCGCAGAC 60.389 60.000 0.00 0.00 37.42 3.51
409 410 0.600557 CAGTCTCAACTCCGCAGACT 59.399 55.000 0.00 0.00 46.39 3.24
410 411 0.885196 AGTCTCAACTCCGCAGACTC 59.115 55.000 0.00 0.00 42.72 3.36
411 412 0.109039 GTCTCAACTCCGCAGACTCC 60.109 60.000 0.00 0.00 34.79 3.85
412 413 0.539669 TCTCAACTCCGCAGACTCCA 60.540 55.000 0.00 0.00 0.00 3.86
413 414 0.318441 CTCAACTCCGCAGACTCCAA 59.682 55.000 0.00 0.00 0.00 3.53
414 415 0.318441 TCAACTCCGCAGACTCCAAG 59.682 55.000 0.00 0.00 0.00 3.61
415 416 0.034059 CAACTCCGCAGACTCCAAGT 59.966 55.000 0.00 0.00 0.00 3.16
416 417 0.318762 AACTCCGCAGACTCCAAGTC 59.681 55.000 0.00 0.00 45.38 3.01
437 438 1.450312 GGCTGGTCGTCCTCCATTG 60.450 63.158 0.00 0.00 34.26 2.82
438 439 1.296715 GCTGGTCGTCCTCCATTGT 59.703 57.895 0.00 0.00 34.26 2.71
439 440 0.741221 GCTGGTCGTCCTCCATTGTC 60.741 60.000 0.00 0.00 34.26 3.18
440 441 0.458543 CTGGTCGTCCTCCATTGTCG 60.459 60.000 0.00 0.00 34.26 4.35
441 442 1.153628 GGTCGTCCTCCATTGTCGG 60.154 63.158 0.00 0.00 0.00 4.79
443 444 2.264480 CGTCCTCCATTGTCGGCA 59.736 61.111 0.00 0.00 0.00 5.69
470 471 3.866582 CCCCTCCGCATCTCCACC 61.867 72.222 0.00 0.00 0.00 4.61
473 474 2.765807 CTCCGCATCTCCACCCCT 60.766 66.667 0.00 0.00 0.00 4.79
511 548 4.760047 CCTCCACCCTTGCCGTCG 62.760 72.222 0.00 0.00 0.00 5.12
523 560 0.894184 TGCCGTCGAGTTCTTCTCCT 60.894 55.000 0.00 0.00 39.84 3.69
544 581 2.046314 CGCCCGACCTCAACCATT 60.046 61.111 0.00 0.00 0.00 3.16
692 790 6.753090 TCCTCCATAGATCTAATTAGGGGA 57.247 41.667 19.68 14.52 0.00 4.81
696 794 6.453476 TCCATAGATCTAATTAGGGGATCCC 58.547 44.000 23.95 23.95 45.90 3.85
737 955 1.534729 AATGGAGAACAAAGGTCCGC 58.465 50.000 0.00 0.00 32.51 5.54
751 976 0.883370 GTCCGCCCGTTTCTTTCAGT 60.883 55.000 0.00 0.00 0.00 3.41
959 1438 6.090129 GCCGTTTCTTCTTATTTGCACATAA 58.910 36.000 5.25 5.25 0.00 1.90
1048 1593 0.604780 TGCTGCTCTGGAGAAAGTGC 60.605 55.000 0.00 0.00 37.23 4.40
1057 1602 0.319900 GGAGAAAGTGCTGCTCGACA 60.320 55.000 0.00 0.00 0.00 4.35
1071 1616 2.076863 CTCGACAAAAGTGTGGATCCC 58.923 52.381 9.90 0.85 41.09 3.85
1129 1674 9.035890 TCACAGGAAACTTCTCTGAAGATAATA 57.964 33.333 13.42 0.00 40.21 0.98
1140 1685 7.500992 TCTCTGAAGATAATAAAATCGGCAGT 58.499 34.615 0.00 0.00 35.38 4.40
1202 1756 4.878397 CCTCCGCTCTGAAATGAATTAACT 59.122 41.667 0.00 0.00 0.00 2.24
1204 1758 5.487433 TCCGCTCTGAAATGAATTAACTGA 58.513 37.500 0.00 0.00 0.00 3.41
1220 1796 9.323985 GAATTAACTGAAGACAATCTAGCTGAT 57.676 33.333 0.00 0.00 36.89 2.90
1221 1797 8.659925 ATTAACTGAAGACAATCTAGCTGATG 57.340 34.615 0.00 0.00 35.21 3.07
1244 1820 2.158842 AGTTCTATGTGAGATGCAGGGC 60.159 50.000 0.00 0.00 32.88 5.19
1397 1973 1.954146 TTGCTCCGAGACGCAACAC 60.954 57.895 0.00 0.00 40.84 3.32
1424 2000 3.082579 GCTGTACGAGGGGAGGCAG 62.083 68.421 0.00 0.00 0.00 4.85
1512 2088 4.883006 ACTATCTCTCCGGTAAAGTCAGAC 59.117 45.833 0.00 0.00 0.00 3.51
1514 2090 3.082548 TCTCTCCGGTAAAGTCAGACTG 58.917 50.000 3.05 0.00 0.00 3.51
1528 2104 4.226168 AGTCAGACTGGCCTTATAGCTTTT 59.774 41.667 3.32 0.00 0.00 2.27
1580 2159 8.693625 AGTAAATATCTACCAACTACAGTCCAC 58.306 37.037 0.00 0.00 0.00 4.02
1743 2395 1.131504 AGAGAGAAGAGCGCACTAACG 59.868 52.381 11.47 0.00 0.00 3.18
1750 2424 3.014604 AGAGCGCACTAACGAATATCC 57.985 47.619 11.47 0.00 34.06 2.59
1760 2434 6.330278 CACTAACGAATATCCTCTGTTGTGA 58.670 40.000 0.00 0.00 0.00 3.58
1795 2469 3.242936 CGAGTGACCAAACGAAAAACCAT 60.243 43.478 0.00 0.00 0.00 3.55
1836 2519 2.419021 CCAAATATGTTGGCAAGCCCAG 60.419 50.000 8.89 0.00 46.39 4.45
1846 2530 1.690352 GGCAAGCCCAGATATTTGCAT 59.310 47.619 9.83 0.00 45.73 3.96
1865 2549 6.715344 TGCATCTGAATTTTCAAATGAAGC 57.285 33.333 10.11 6.18 37.75 3.86
1870 2554 6.378582 TCTGAATTTTCAAATGAAGCGGTAC 58.621 36.000 0.00 0.00 36.64 3.34
1876 2560 4.119442 TCAAATGAAGCGGTACCTACTC 57.881 45.455 10.90 3.78 0.00 2.59
1877 2561 3.118884 TCAAATGAAGCGGTACCTACTCC 60.119 47.826 10.90 0.00 0.00 3.85
1878 2562 1.411041 ATGAAGCGGTACCTACTCCC 58.589 55.000 10.90 4.18 0.00 4.30
1879 2563 0.333993 TGAAGCGGTACCTACTCCCT 59.666 55.000 10.90 0.00 0.00 4.20
1880 2564 1.031235 GAAGCGGTACCTACTCCCTC 58.969 60.000 10.90 0.00 0.00 4.30
1881 2565 0.630134 AAGCGGTACCTACTCCCTCT 59.370 55.000 10.90 0.00 0.00 3.69
1882 2566 0.106619 AGCGGTACCTACTCCCTCTG 60.107 60.000 10.90 0.00 0.00 3.35
1883 2567 0.395448 GCGGTACCTACTCCCTCTGT 60.395 60.000 10.90 0.00 0.00 3.41
1884 2568 1.959028 GCGGTACCTACTCCCTCTGTT 60.959 57.143 10.90 0.00 0.00 3.16
1885 2569 2.022934 CGGTACCTACTCCCTCTGTTC 58.977 57.143 10.90 0.00 0.00 3.18
1886 2570 2.619849 CGGTACCTACTCCCTCTGTTCA 60.620 54.545 10.90 0.00 0.00 3.18
1887 2571 2.759535 GGTACCTACTCCCTCTGTTCAC 59.240 54.545 4.06 0.00 0.00 3.18
1888 2572 3.563915 GGTACCTACTCCCTCTGTTCACT 60.564 52.174 4.06 0.00 0.00 3.41
1889 2573 3.261818 ACCTACTCCCTCTGTTCACTT 57.738 47.619 0.00 0.00 0.00 3.16
1890 2574 3.588569 ACCTACTCCCTCTGTTCACTTT 58.411 45.455 0.00 0.00 0.00 2.66
1891 2575 3.974642 ACCTACTCCCTCTGTTCACTTTT 59.025 43.478 0.00 0.00 0.00 2.27
1892 2576 4.202367 ACCTACTCCCTCTGTTCACTTTTG 60.202 45.833 0.00 0.00 0.00 2.44
1893 2577 3.933861 ACTCCCTCTGTTCACTTTTGT 57.066 42.857 0.00 0.00 0.00 2.83
1894 2578 5.011738 CCTACTCCCTCTGTTCACTTTTGTA 59.988 44.000 0.00 0.00 0.00 2.41
1895 2579 5.367945 ACTCCCTCTGTTCACTTTTGTAA 57.632 39.130 0.00 0.00 0.00 2.41
1896 2580 5.368989 ACTCCCTCTGTTCACTTTTGTAAG 58.631 41.667 0.00 0.00 37.40 2.34
1897 2581 5.104485 ACTCCCTCTGTTCACTTTTGTAAGT 60.104 40.000 0.00 0.00 45.40 2.24
1898 2582 5.365619 TCCCTCTGTTCACTTTTGTAAGTC 58.634 41.667 0.00 0.00 42.67 3.01
1899 2583 4.211374 CCCTCTGTTCACTTTTGTAAGTCG 59.789 45.833 0.00 0.00 42.67 4.18
1900 2584 4.809426 CCTCTGTTCACTTTTGTAAGTCGT 59.191 41.667 0.00 0.00 42.67 4.34
1901 2585 5.293569 CCTCTGTTCACTTTTGTAAGTCGTT 59.706 40.000 0.00 0.00 42.67 3.85
1902 2586 6.183360 CCTCTGTTCACTTTTGTAAGTCGTTT 60.183 38.462 0.00 0.00 42.67 3.60
1903 2587 7.010738 CCTCTGTTCACTTTTGTAAGTCGTTTA 59.989 37.037 0.00 0.00 42.67 2.01
1904 2588 7.902032 TCTGTTCACTTTTGTAAGTCGTTTAG 58.098 34.615 0.00 0.00 42.67 1.85
1905 2589 7.007313 TGTTCACTTTTGTAAGTCGTTTAGG 57.993 36.000 0.00 0.00 42.67 2.69
1906 2590 6.817641 TGTTCACTTTTGTAAGTCGTTTAGGA 59.182 34.615 0.00 0.00 42.67 2.94
1907 2591 6.833342 TCACTTTTGTAAGTCGTTTAGGAC 57.167 37.500 0.00 0.00 42.67 3.85
1908 2592 6.339730 TCACTTTTGTAAGTCGTTTAGGACA 58.660 36.000 5.50 0.00 42.67 4.02
1909 2593 6.477688 TCACTTTTGTAAGTCGTTTAGGACAG 59.522 38.462 5.50 0.00 42.67 3.51
1910 2594 5.235831 ACTTTTGTAAGTCGTTTAGGACAGC 59.764 40.000 5.50 0.00 40.60 4.40
1911 2595 4.595762 TTGTAAGTCGTTTAGGACAGCT 57.404 40.909 5.50 0.00 39.42 4.24
1912 2596 3.909430 TGTAAGTCGTTTAGGACAGCTG 58.091 45.455 13.48 13.48 39.42 4.24
1913 2597 3.570975 TGTAAGTCGTTTAGGACAGCTGA 59.429 43.478 23.35 0.00 39.42 4.26
1914 2598 3.746045 AAGTCGTTTAGGACAGCTGAA 57.254 42.857 23.35 0.04 39.42 3.02
1915 2599 3.746045 AGTCGTTTAGGACAGCTGAAA 57.254 42.857 23.35 7.52 39.42 2.69
1916 2600 4.273148 AGTCGTTTAGGACAGCTGAAAT 57.727 40.909 23.35 7.64 39.42 2.17
1917 2601 4.642429 AGTCGTTTAGGACAGCTGAAATT 58.358 39.130 23.35 0.00 39.42 1.82
1918 2602 4.452455 AGTCGTTTAGGACAGCTGAAATTG 59.548 41.667 23.35 7.48 39.42 2.32
1919 2603 4.451096 GTCGTTTAGGACAGCTGAAATTGA 59.549 41.667 23.35 9.59 36.91 2.57
1920 2604 5.049680 GTCGTTTAGGACAGCTGAAATTGAA 60.050 40.000 23.35 4.96 36.91 2.69
1921 2605 5.049680 TCGTTTAGGACAGCTGAAATTGAAC 60.050 40.000 23.35 15.30 0.00 3.18
1922 2606 5.049405 CGTTTAGGACAGCTGAAATTGAACT 60.049 40.000 23.35 8.35 0.00 3.01
1923 2607 5.947228 TTAGGACAGCTGAAATTGAACTG 57.053 39.130 23.35 0.00 0.00 3.16
1924 2608 3.825328 AGGACAGCTGAAATTGAACTGT 58.175 40.909 23.35 0.00 43.93 3.55
1925 2609 4.210331 AGGACAGCTGAAATTGAACTGTT 58.790 39.130 23.35 0.00 41.45 3.16
1926 2610 4.646492 AGGACAGCTGAAATTGAACTGTTT 59.354 37.500 23.35 0.00 41.45 2.83
1927 2611 5.127682 AGGACAGCTGAAATTGAACTGTTTT 59.872 36.000 23.35 0.00 41.45 2.43
1928 2612 6.321181 AGGACAGCTGAAATTGAACTGTTTTA 59.679 34.615 23.35 0.00 41.45 1.52
1929 2613 6.638468 GGACAGCTGAAATTGAACTGTTTTAG 59.362 38.462 23.35 0.00 41.45 1.85
1930 2614 6.507023 ACAGCTGAAATTGAACTGTTTTAGG 58.493 36.000 23.35 0.00 38.38 2.69
1931 2615 6.096846 ACAGCTGAAATTGAACTGTTTTAGGT 59.903 34.615 23.35 0.00 38.38 3.08
1932 2616 6.418819 CAGCTGAAATTGAACTGTTTTAGGTG 59.581 38.462 8.42 7.20 40.48 4.00
1933 2617 5.175673 GCTGAAATTGAACTGTTTTAGGTGC 59.824 40.000 0.00 0.00 0.00 5.01
1934 2618 6.463995 TGAAATTGAACTGTTTTAGGTGCT 57.536 33.333 0.00 0.00 0.00 4.40
1935 2619 7.575414 TGAAATTGAACTGTTTTAGGTGCTA 57.425 32.000 0.00 0.00 0.00 3.49
1936 2620 8.177119 TGAAATTGAACTGTTTTAGGTGCTAT 57.823 30.769 0.00 0.00 0.00 2.97
1937 2621 8.296713 TGAAATTGAACTGTTTTAGGTGCTATC 58.703 33.333 0.00 0.00 0.00 2.08
1938 2622 8.409358 AAATTGAACTGTTTTAGGTGCTATCT 57.591 30.769 0.00 0.00 0.00 1.98
1939 2623 8.409358 AATTGAACTGTTTTAGGTGCTATCTT 57.591 30.769 0.00 0.00 0.00 2.40
1940 2624 9.515226 AATTGAACTGTTTTAGGTGCTATCTTA 57.485 29.630 0.00 0.00 0.00 2.10
1941 2625 8.911918 TTGAACTGTTTTAGGTGCTATCTTAA 57.088 30.769 0.00 0.00 0.00 1.85
1942 2626 8.911918 TGAACTGTTTTAGGTGCTATCTTAAA 57.088 30.769 0.00 0.00 0.00 1.52
1943 2627 9.515226 TGAACTGTTTTAGGTGCTATCTTAAAT 57.485 29.630 0.00 0.00 0.00 1.40
1944 2628 9.774742 GAACTGTTTTAGGTGCTATCTTAAATG 57.225 33.333 0.00 0.00 0.00 2.32
1945 2629 8.863872 ACTGTTTTAGGTGCTATCTTAAATGT 57.136 30.769 0.00 0.00 0.00 2.71
1946 2630 8.947115 ACTGTTTTAGGTGCTATCTTAAATGTC 58.053 33.333 0.00 0.00 0.00 3.06
1947 2631 9.167311 CTGTTTTAGGTGCTATCTTAAATGTCT 57.833 33.333 0.00 0.00 0.00 3.41
1953 2637 8.682936 AGGTGCTATCTTAAATGTCTAAATGG 57.317 34.615 0.00 0.00 0.00 3.16
1954 2638 8.275040 AGGTGCTATCTTAAATGTCTAAATGGT 58.725 33.333 0.00 0.00 0.00 3.55
1955 2639 8.560374 GGTGCTATCTTAAATGTCTAAATGGTC 58.440 37.037 0.00 0.00 0.00 4.02
1956 2640 9.331282 GTGCTATCTTAAATGTCTAAATGGTCT 57.669 33.333 0.00 0.00 0.00 3.85
1957 2641 9.905713 TGCTATCTTAAATGTCTAAATGGTCTT 57.094 29.630 0.00 0.00 0.00 3.01
1966 2650 9.965824 AAATGTCTAAATGGTCTTACAAAAGTG 57.034 29.630 0.00 0.00 34.13 3.16
1967 2651 8.918202 ATGTCTAAATGGTCTTACAAAAGTGA 57.082 30.769 0.00 0.00 34.13 3.41
1968 2652 8.740123 TGTCTAAATGGTCTTACAAAAGTGAA 57.260 30.769 0.00 0.00 34.13 3.18
1969 2653 9.349713 TGTCTAAATGGTCTTACAAAAGTGAAT 57.650 29.630 0.00 0.00 34.13 2.57
1970 2654 9.612620 GTCTAAATGGTCTTACAAAAGTGAATG 57.387 33.333 0.00 0.00 34.13 2.67
1971 2655 8.792633 TCTAAATGGTCTTACAAAAGTGAATGG 58.207 33.333 0.00 0.00 34.13 3.16
1972 2656 7.595819 AAATGGTCTTACAAAAGTGAATGGA 57.404 32.000 0.00 0.00 34.13 3.41
1973 2657 6.824305 ATGGTCTTACAAAAGTGAATGGAG 57.176 37.500 0.00 0.00 34.13 3.86
1974 2658 5.070001 TGGTCTTACAAAAGTGAATGGAGG 58.930 41.667 0.00 0.00 34.13 4.30
1975 2659 4.459337 GGTCTTACAAAAGTGAATGGAGGG 59.541 45.833 0.00 0.00 34.13 4.30
1976 2660 5.313712 GTCTTACAAAAGTGAATGGAGGGA 58.686 41.667 0.00 0.00 34.13 4.20
1977 2661 5.412904 GTCTTACAAAAGTGAATGGAGGGAG 59.587 44.000 0.00 0.00 34.13 4.30
1978 2662 3.884037 ACAAAAGTGAATGGAGGGAGT 57.116 42.857 0.00 0.00 0.00 3.85
1979 2663 4.993705 ACAAAAGTGAATGGAGGGAGTA 57.006 40.909 0.00 0.00 0.00 2.59
1980 2664 4.652822 ACAAAAGTGAATGGAGGGAGTAC 58.347 43.478 0.00 0.00 0.00 2.73
2100 2808 0.804989 CATTCACGAAGGCCCTTCAC 59.195 55.000 22.83 0.00 40.17 3.18
2224 2936 1.083706 AAGGGGATCTGTGAGGGCT 59.916 57.895 0.00 0.00 0.00 5.19
2227 2939 0.761802 GGGGATCTGTGAGGGCTTAG 59.238 60.000 0.00 0.00 0.00 2.18
2687 3420 7.552330 ACATGTTTAGCAGAAACCACAATTTTT 59.448 29.630 10.66 0.00 0.00 1.94
2716 3450 6.405397 GGAAAAAGTGCAACCCGTATATTCAT 60.405 38.462 0.00 0.00 37.80 2.57
2946 3905 9.614792 ATGTCATCCTTCTTTATAACTAACCAC 57.385 33.333 0.00 0.00 0.00 4.16
2978 3938 1.168714 GCAGGTAGTTGAAAGCTGGG 58.831 55.000 4.66 0.00 41.62 4.45
3118 4078 1.874129 TCCGTGGAATACTGGGTGAT 58.126 50.000 0.00 0.00 0.00 3.06
3123 4083 1.563879 TGGAATACTGGGTGATGTGGG 59.436 52.381 0.00 0.00 0.00 4.61
3146 4106 6.868339 GGGAATTTCAAATTGGTCTGTTACAG 59.132 38.462 5.94 5.94 0.00 2.74
3179 4139 1.561542 CCTCAACAGAAGGGCAGGTAT 59.438 52.381 0.00 0.00 0.00 2.73
3323 4283 3.719268 TGGATGGTTCTGCTGTTACAT 57.281 42.857 0.00 0.00 0.00 2.29
3324 4284 4.032960 TGGATGGTTCTGCTGTTACATT 57.967 40.909 0.00 0.00 0.00 2.71
3325 4285 3.758023 TGGATGGTTCTGCTGTTACATTG 59.242 43.478 0.00 0.00 0.00 2.82
3326 4286 3.129287 GGATGGTTCTGCTGTTACATTGG 59.871 47.826 0.00 0.00 0.00 3.16
3327 4287 3.500448 TGGTTCTGCTGTTACATTGGA 57.500 42.857 0.00 0.00 0.00 3.53
3331 4291 3.610040 TCTGCTGTTACATTGGACGAT 57.390 42.857 0.00 0.00 0.00 3.73
3332 4292 3.261580 TCTGCTGTTACATTGGACGATG 58.738 45.455 0.00 0.00 0.00 3.84
3333 4293 2.352651 CTGCTGTTACATTGGACGATGG 59.647 50.000 4.67 0.00 0.00 3.51
3334 4294 1.064060 GCTGTTACATTGGACGATGGC 59.936 52.381 4.67 0.00 0.00 4.40
3335 4295 2.355197 CTGTTACATTGGACGATGGCA 58.645 47.619 4.67 0.00 0.00 4.92
3336 4296 2.746904 CTGTTACATTGGACGATGGCAA 59.253 45.455 0.00 0.00 0.00 4.52
3338 4298 3.761218 TGTTACATTGGACGATGGCAAAT 59.239 39.130 0.00 0.00 0.00 2.32
3339 4299 4.219507 TGTTACATTGGACGATGGCAAATT 59.780 37.500 0.00 0.00 0.00 1.82
3398 4379 1.536766 CATCAAACATGAGTGTGGCGT 59.463 47.619 0.00 0.00 38.92 5.68
3405 4386 0.614979 ATGAGTGTGGCGTCTAGGGT 60.615 55.000 0.00 0.00 0.00 4.34
3406 4387 1.215647 GAGTGTGGCGTCTAGGGTG 59.784 63.158 0.00 0.00 0.00 4.61
3407 4388 1.228769 AGTGTGGCGTCTAGGGTGA 60.229 57.895 0.00 0.00 0.00 4.02
3408 4389 0.614979 AGTGTGGCGTCTAGGGTGAT 60.615 55.000 0.00 0.00 0.00 3.06
3409 4390 0.460284 GTGTGGCGTCTAGGGTGATG 60.460 60.000 0.00 0.00 0.00 3.07
3410 4391 0.613572 TGTGGCGTCTAGGGTGATGA 60.614 55.000 0.00 0.00 0.00 2.92
3411 4392 0.179108 GTGGCGTCTAGGGTGATGAC 60.179 60.000 0.00 0.00 0.00 3.06
3451 4432 2.422597 CAAGCTTACCACGTTCATGGA 58.577 47.619 0.00 0.00 43.02 3.41
3468 4452 4.156373 TCATGGACAACGAGTACAATACGA 59.844 41.667 2.04 0.00 46.24 3.43
3553 4537 2.625737 CGGATGAGCTGAAGTTGATGT 58.374 47.619 0.00 0.00 0.00 3.06
3573 4557 3.257375 TGTGTAATTCTGTCGCTAGTGGT 59.743 43.478 2.90 0.00 0.00 4.16
3574 4558 3.612860 GTGTAATTCTGTCGCTAGTGGTG 59.387 47.826 2.90 0.00 0.00 4.17
3623 4607 2.268076 AACTGCAACCATCGGCACC 61.268 57.895 0.00 0.00 35.86 5.01
3681 4665 4.464008 AGAACAAGAGAAAGGCATCAACA 58.536 39.130 0.00 0.00 0.00 3.33
3933 4923 1.625818 GCCAACAGAAGAAGAGGAGGA 59.374 52.381 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.957497 AGTTTAACAAACCAGACATGCCA 59.043 39.130 0.00 0.00 42.34 4.92
1 2 4.584327 AGTTTAACAAACCAGACATGCC 57.416 40.909 0.00 0.00 42.34 4.40
3 4 9.912634 AAATCATAGTTTAACAAACCAGACATG 57.087 29.630 0.00 0.00 42.34 3.21
4 5 9.912634 CAAATCATAGTTTAACAAACCAGACAT 57.087 29.630 0.00 0.00 42.34 3.06
5 6 7.865385 GCAAATCATAGTTTAACAAACCAGACA 59.135 33.333 0.00 0.00 42.34 3.41
6 7 8.082242 AGCAAATCATAGTTTAACAAACCAGAC 58.918 33.333 0.00 0.00 42.34 3.51
7 8 8.177119 AGCAAATCATAGTTTAACAAACCAGA 57.823 30.769 0.00 0.00 42.34 3.86
8 9 8.816640 AAGCAAATCATAGTTTAACAAACCAG 57.183 30.769 0.00 0.00 42.34 4.00
9 10 9.606631 AAAAGCAAATCATAGTTTAACAAACCA 57.393 25.926 0.00 0.00 42.34 3.67
34 35 8.774586 TCCAAATTCAAAAGTTCGAAACAAAAA 58.225 25.926 0.00 0.00 0.00 1.94
35 36 8.224437 GTCCAAATTCAAAAGTTCGAAACAAAA 58.776 29.630 0.00 0.00 0.00 2.44
36 37 7.385205 TGTCCAAATTCAAAAGTTCGAAACAAA 59.615 29.630 0.00 0.00 0.00 2.83
37 38 6.868864 TGTCCAAATTCAAAAGTTCGAAACAA 59.131 30.769 0.00 0.00 0.00 2.83
38 39 6.390721 TGTCCAAATTCAAAAGTTCGAAACA 58.609 32.000 0.00 0.00 0.00 2.83
39 40 6.879188 TGTCCAAATTCAAAAGTTCGAAAC 57.121 33.333 0.00 0.00 0.00 2.78
40 41 8.485976 AATTGTCCAAATTCAAAAGTTCGAAA 57.514 26.923 0.00 0.00 0.00 3.46
41 42 8.386606 CAAATTGTCCAAATTCAAAAGTTCGAA 58.613 29.630 0.00 0.00 0.00 3.71
42 43 7.547370 ACAAATTGTCCAAATTCAAAAGTTCGA 59.453 29.630 0.00 0.00 0.00 3.71
43 44 7.683746 ACAAATTGTCCAAATTCAAAAGTTCG 58.316 30.769 0.00 0.00 0.00 3.95
46 47 8.977505 CGATACAAATTGTCCAAATTCAAAAGT 58.022 29.630 0.22 0.00 0.00 2.66
47 48 8.977505 ACGATACAAATTGTCCAAATTCAAAAG 58.022 29.630 0.22 0.00 0.00 2.27
48 49 8.879342 ACGATACAAATTGTCCAAATTCAAAA 57.121 26.923 0.22 0.00 0.00 2.44
50 51 9.566530 CATACGATACAAATTGTCCAAATTCAA 57.433 29.630 0.22 0.00 31.79 2.69
51 52 8.951243 TCATACGATACAAATTGTCCAAATTCA 58.049 29.630 0.22 0.00 31.79 2.57
52 53 9.950680 ATCATACGATACAAATTGTCCAAATTC 57.049 29.630 0.22 0.00 31.79 2.17
53 54 9.950680 GATCATACGATACAAATTGTCCAAATT 57.049 29.630 0.22 0.00 31.79 1.82
54 55 8.282592 CGATCATACGATACAAATTGTCCAAAT 58.717 33.333 0.22 0.00 31.79 2.32
55 56 7.492994 TCGATCATACGATACAAATTGTCCAAA 59.507 33.333 0.22 0.00 37.37 3.28
56 57 6.981559 TCGATCATACGATACAAATTGTCCAA 59.018 34.615 0.22 0.00 37.37 3.53
57 58 6.419710 GTCGATCATACGATACAAATTGTCCA 59.580 38.462 0.22 0.00 43.93 4.02
58 59 6.398621 CGTCGATCATACGATACAAATTGTCC 60.399 42.308 0.22 0.00 43.93 4.02
59 60 6.141844 ACGTCGATCATACGATACAAATTGTC 59.858 38.462 20.73 0.00 43.93 3.18
60 61 5.975344 ACGTCGATCATACGATACAAATTGT 59.025 36.000 20.73 3.43 43.93 2.71
61 62 6.281789 CACGTCGATCATACGATACAAATTG 58.718 40.000 20.73 5.68 43.93 2.32
62 63 5.107989 GCACGTCGATCATACGATACAAATT 60.108 40.000 20.73 0.00 43.93 1.82
63 64 4.381863 GCACGTCGATCATACGATACAAAT 59.618 41.667 20.73 0.00 43.93 2.32
64 65 3.727227 GCACGTCGATCATACGATACAAA 59.273 43.478 20.73 0.00 43.93 2.83
65 66 3.242804 TGCACGTCGATCATACGATACAA 60.243 43.478 20.73 3.10 43.93 2.41
66 67 2.288458 TGCACGTCGATCATACGATACA 59.712 45.455 20.73 13.28 43.93 2.29
67 68 2.912366 TGCACGTCGATCATACGATAC 58.088 47.619 20.73 11.40 43.93 2.24
68 69 3.824414 ATGCACGTCGATCATACGATA 57.176 42.857 20.73 9.14 43.93 2.92
69 70 2.706555 ATGCACGTCGATCATACGAT 57.293 45.000 20.73 4.96 43.93 3.73
70 71 3.612472 TTATGCACGTCGATCATACGA 57.388 42.857 20.73 0.00 42.90 3.43
71 72 3.729217 ACTTTATGCACGTCGATCATACG 59.271 43.478 14.21 14.21 45.64 3.06
72 73 4.994734 CACTTTATGCACGTCGATCATAC 58.005 43.478 0.00 0.00 0.00 2.39
86 87 5.840243 TCCTCAAATCCATGCACTTTATG 57.160 39.130 0.00 0.00 0.00 1.90
87 88 5.240183 CGATCCTCAAATCCATGCACTTTAT 59.760 40.000 0.00 0.00 0.00 1.40
88 89 4.576053 CGATCCTCAAATCCATGCACTTTA 59.424 41.667 0.00 0.00 0.00 1.85
89 90 3.379372 CGATCCTCAAATCCATGCACTTT 59.621 43.478 0.00 0.00 0.00 2.66
90 91 2.947652 CGATCCTCAAATCCATGCACTT 59.052 45.455 0.00 0.00 0.00 3.16
91 92 2.569059 CGATCCTCAAATCCATGCACT 58.431 47.619 0.00 0.00 0.00 4.40
92 93 1.605710 CCGATCCTCAAATCCATGCAC 59.394 52.381 0.00 0.00 0.00 4.57
93 94 1.490069 TCCGATCCTCAAATCCATGCA 59.510 47.619 0.00 0.00 0.00 3.96
94 95 2.260844 TCCGATCCTCAAATCCATGC 57.739 50.000 0.00 0.00 0.00 4.06
95 96 5.300034 TCAAATTCCGATCCTCAAATCCATG 59.700 40.000 0.00 0.00 0.00 3.66
96 97 5.448654 TCAAATTCCGATCCTCAAATCCAT 58.551 37.500 0.00 0.00 0.00 3.41
97 98 4.854173 TCAAATTCCGATCCTCAAATCCA 58.146 39.130 0.00 0.00 0.00 3.41
98 99 4.276926 CCTCAAATTCCGATCCTCAAATCC 59.723 45.833 0.00 0.00 0.00 3.01
99 100 4.884164 ACCTCAAATTCCGATCCTCAAATC 59.116 41.667 0.00 0.00 0.00 2.17
100 101 4.860022 ACCTCAAATTCCGATCCTCAAAT 58.140 39.130 0.00 0.00 0.00 2.32
101 102 4.301072 ACCTCAAATTCCGATCCTCAAA 57.699 40.909 0.00 0.00 0.00 2.69
102 103 5.104527 ACATACCTCAAATTCCGATCCTCAA 60.105 40.000 0.00 0.00 0.00 3.02
103 104 4.408921 ACATACCTCAAATTCCGATCCTCA 59.591 41.667 0.00 0.00 0.00 3.86
104 105 4.752101 CACATACCTCAAATTCCGATCCTC 59.248 45.833 0.00 0.00 0.00 3.71
105 106 4.444876 CCACATACCTCAAATTCCGATCCT 60.445 45.833 0.00 0.00 0.00 3.24
106 107 3.815401 CCACATACCTCAAATTCCGATCC 59.185 47.826 0.00 0.00 0.00 3.36
107 108 4.703897 TCCACATACCTCAAATTCCGATC 58.296 43.478 0.00 0.00 0.00 3.69
108 109 4.771114 TCCACATACCTCAAATTCCGAT 57.229 40.909 0.00 0.00 0.00 4.18
109 110 4.771114 ATCCACATACCTCAAATTCCGA 57.229 40.909 0.00 0.00 0.00 4.55
110 111 5.106555 GCATATCCACATACCTCAAATTCCG 60.107 44.000 0.00 0.00 0.00 4.30
111 112 5.106555 CGCATATCCACATACCTCAAATTCC 60.107 44.000 0.00 0.00 0.00 3.01
112 113 5.106555 CCGCATATCCACATACCTCAAATTC 60.107 44.000 0.00 0.00 0.00 2.17
113 114 4.761739 CCGCATATCCACATACCTCAAATT 59.238 41.667 0.00 0.00 0.00 1.82
114 115 4.326826 CCGCATATCCACATACCTCAAAT 58.673 43.478 0.00 0.00 0.00 2.32
115 116 3.738982 CCGCATATCCACATACCTCAAA 58.261 45.455 0.00 0.00 0.00 2.69
116 117 2.549992 GCCGCATATCCACATACCTCAA 60.550 50.000 0.00 0.00 0.00 3.02
117 118 1.001974 GCCGCATATCCACATACCTCA 59.998 52.381 0.00 0.00 0.00 3.86
118 119 1.726853 GCCGCATATCCACATACCTC 58.273 55.000 0.00 0.00 0.00 3.85
119 120 0.037326 CGCCGCATATCCACATACCT 60.037 55.000 0.00 0.00 0.00 3.08
120 121 1.635663 GCGCCGCATATCCACATACC 61.636 60.000 3.15 0.00 0.00 2.73
121 122 0.948623 TGCGCCGCATATCCACATAC 60.949 55.000 8.16 0.00 31.71 2.39
122 123 0.250081 TTGCGCCGCATATCCACATA 60.250 50.000 14.63 0.00 38.76 2.29
123 124 1.525765 TTGCGCCGCATATCCACAT 60.526 52.632 14.63 0.00 38.76 3.21
124 125 2.124942 TTGCGCCGCATATCCACA 60.125 55.556 14.63 0.00 38.76 4.17
125 126 1.785041 ATGTTGCGCCGCATATCCAC 61.785 55.000 14.63 8.45 38.76 4.02
126 127 0.250081 TATGTTGCGCCGCATATCCA 60.250 50.000 14.63 8.19 38.76 3.41
127 128 1.086696 ATATGTTGCGCCGCATATCC 58.913 50.000 14.63 1.82 38.76 2.59
128 129 1.731709 TCATATGTTGCGCCGCATATC 59.268 47.619 22.66 7.56 38.76 1.63
129 130 1.807139 TCATATGTTGCGCCGCATAT 58.193 45.000 14.63 20.87 38.76 1.78
130 131 1.530720 CTTCATATGTTGCGCCGCATA 59.469 47.619 14.63 18.79 38.76 3.14
131 132 0.308684 CTTCATATGTTGCGCCGCAT 59.691 50.000 14.63 16.14 38.76 4.73
132 133 1.713937 CCTTCATATGTTGCGCCGCA 61.714 55.000 8.16 8.16 36.47 5.69
133 134 1.009675 CCTTCATATGTTGCGCCGC 60.010 57.895 4.18 0.00 0.00 6.53
134 135 0.304705 GTCCTTCATATGTTGCGCCG 59.695 55.000 4.18 0.00 0.00 6.46
135 136 0.663153 GGTCCTTCATATGTTGCGCC 59.337 55.000 4.18 0.00 0.00 6.53
136 137 0.304705 CGGTCCTTCATATGTTGCGC 59.695 55.000 0.00 0.00 0.00 6.09
137 138 0.937304 CCGGTCCTTCATATGTTGCG 59.063 55.000 1.90 0.00 0.00 4.85
138 139 0.663153 GCCGGTCCTTCATATGTTGC 59.337 55.000 1.90 0.00 0.00 4.17
139 140 0.937304 CGCCGGTCCTTCATATGTTG 59.063 55.000 1.90 0.00 0.00 3.33
140 141 0.179056 CCGCCGGTCCTTCATATGTT 60.179 55.000 1.90 0.00 0.00 2.71
141 142 1.445942 CCGCCGGTCCTTCATATGT 59.554 57.895 1.90 0.00 0.00 2.29
142 143 1.301716 CCCGCCGGTCCTTCATATG 60.302 63.158 1.90 0.00 0.00 1.78
143 144 1.458777 TCCCGCCGGTCCTTCATAT 60.459 57.895 1.90 0.00 0.00 1.78
144 145 2.042741 TCCCGCCGGTCCTTCATA 60.043 61.111 1.90 0.00 0.00 2.15
145 146 3.470888 CTCCCGCCGGTCCTTCAT 61.471 66.667 1.90 0.00 0.00 2.57
151 152 4.509737 GTACAGCTCCCGCCGGTC 62.510 72.222 1.90 0.00 36.60 4.79
153 154 3.849951 ATGTACAGCTCCCGCCGG 61.850 66.667 0.33 0.00 36.60 6.13
154 155 2.572095 TTCATGTACAGCTCCCGCCG 62.572 60.000 0.33 0.00 36.60 6.46
155 156 1.090052 GTTCATGTACAGCTCCCGCC 61.090 60.000 0.33 0.00 36.60 6.13
156 157 1.421410 CGTTCATGTACAGCTCCCGC 61.421 60.000 0.33 0.00 0.00 6.13
157 158 1.421410 GCGTTCATGTACAGCTCCCG 61.421 60.000 0.33 1.21 0.00 5.14
158 159 1.421410 CGCGTTCATGTACAGCTCCC 61.421 60.000 0.33 0.00 0.00 4.30
159 160 1.999051 CGCGTTCATGTACAGCTCC 59.001 57.895 0.33 0.00 0.00 4.70
160 161 1.345176 GCGCGTTCATGTACAGCTC 59.655 57.895 8.43 5.92 0.00 4.09
161 162 2.100631 GGCGCGTTCATGTACAGCT 61.101 57.895 8.43 0.00 0.00 4.24
162 163 2.399611 GGCGCGTTCATGTACAGC 59.600 61.111 8.43 10.17 0.00 4.40
163 164 1.089481 ATGGGCGCGTTCATGTACAG 61.089 55.000 8.43 0.00 0.00 2.74
164 165 1.078778 ATGGGCGCGTTCATGTACA 60.079 52.632 8.43 0.00 0.00 2.90
165 166 1.351707 CATGGGCGCGTTCATGTAC 59.648 57.895 24.99 0.00 36.82 2.90
166 167 1.817520 CCATGGGCGCGTTCATGTA 60.818 57.895 28.22 5.70 39.12 2.29
167 168 3.133464 CCATGGGCGCGTTCATGT 61.133 61.111 28.22 6.97 39.12 3.21
168 169 3.891400 CCCATGGGCGCGTTCATG 61.891 66.667 20.41 25.79 40.12 3.07
178 179 3.077907 CCCCTATACGCCCATGGG 58.922 66.667 27.87 27.87 37.68 4.00
179 180 2.351276 GCCCCTATACGCCCATGG 59.649 66.667 4.14 4.14 0.00 3.66
180 181 2.351276 GGCCCCTATACGCCCATG 59.649 66.667 0.00 0.00 39.39 3.66
181 182 3.319198 CGGCCCCTATACGCCCAT 61.319 66.667 0.00 0.00 42.53 4.00
184 185 2.120737 AAATCCGGCCCCTATACGCC 62.121 60.000 0.00 0.00 42.05 5.68
185 186 0.953960 CAAATCCGGCCCCTATACGC 60.954 60.000 0.00 0.00 0.00 4.42
186 187 0.953960 GCAAATCCGGCCCCTATACG 60.954 60.000 0.00 0.00 0.00 3.06
187 188 0.608308 GGCAAATCCGGCCCCTATAC 60.608 60.000 0.00 0.00 45.87 1.47
188 189 1.765074 GGCAAATCCGGCCCCTATA 59.235 57.895 0.00 0.00 45.87 1.31
189 190 2.520968 GGCAAATCCGGCCCCTAT 59.479 61.111 0.00 0.00 45.87 2.57
195 196 2.885113 GGACTTGGCAAATCCGGC 59.115 61.111 12.45 0.00 37.80 6.13
198 199 0.243636 CAACCGGACTTGGCAAATCC 59.756 55.000 17.46 17.46 0.00 3.01
199 200 0.958822 ACAACCGGACTTGGCAAATC 59.041 50.000 9.46 0.00 0.00 2.17
200 201 2.159382 CTACAACCGGACTTGGCAAAT 58.841 47.619 9.46 0.00 0.00 2.32
201 202 1.141254 TCTACAACCGGACTTGGCAAA 59.859 47.619 9.46 0.00 0.00 3.68
202 203 0.759959 TCTACAACCGGACTTGGCAA 59.240 50.000 9.46 0.00 0.00 4.52
203 204 0.034337 GTCTACAACCGGACTTGGCA 59.966 55.000 9.46 0.00 0.00 4.92
204 205 1.012486 CGTCTACAACCGGACTTGGC 61.012 60.000 9.46 0.00 0.00 4.52
205 206 1.012486 GCGTCTACAACCGGACTTGG 61.012 60.000 9.46 0.00 0.00 3.61
206 207 0.038526 AGCGTCTACAACCGGACTTG 60.039 55.000 9.46 5.71 0.00 3.16
207 208 0.243095 GAGCGTCTACAACCGGACTT 59.757 55.000 9.46 0.00 0.00 3.01
208 209 0.608582 AGAGCGTCTACAACCGGACT 60.609 55.000 9.46 0.00 0.00 3.85
209 210 1.089920 TAGAGCGTCTACAACCGGAC 58.910 55.000 9.46 0.00 0.00 4.79
210 211 1.741706 CTTAGAGCGTCTACAACCGGA 59.258 52.381 9.46 0.00 0.00 5.14
211 212 1.741706 TCTTAGAGCGTCTACAACCGG 59.258 52.381 0.00 0.00 0.00 5.28
212 213 3.364062 CATCTTAGAGCGTCTACAACCG 58.636 50.000 0.00 0.00 0.00 4.44
213 214 3.117046 GCATCTTAGAGCGTCTACAACC 58.883 50.000 0.00 0.00 0.00 3.77
214 215 3.548268 GTGCATCTTAGAGCGTCTACAAC 59.452 47.826 0.00 0.00 0.00 3.32
215 216 3.428999 GGTGCATCTTAGAGCGTCTACAA 60.429 47.826 0.00 0.00 0.00 2.41
216 217 2.099263 GGTGCATCTTAGAGCGTCTACA 59.901 50.000 0.00 0.00 0.00 2.74
217 218 2.359531 AGGTGCATCTTAGAGCGTCTAC 59.640 50.000 0.00 0.00 0.00 2.59
218 219 2.656002 AGGTGCATCTTAGAGCGTCTA 58.344 47.619 0.00 0.00 0.00 2.59
219 220 1.479709 AGGTGCATCTTAGAGCGTCT 58.520 50.000 0.00 0.00 0.00 4.18
220 221 2.619177 TCTAGGTGCATCTTAGAGCGTC 59.381 50.000 3.93 0.00 32.27 5.19
221 222 2.621055 CTCTAGGTGCATCTTAGAGCGT 59.379 50.000 3.93 0.00 42.80 5.07
222 223 2.881513 TCTCTAGGTGCATCTTAGAGCG 59.118 50.000 20.15 4.35 46.10 5.03
223 224 4.582656 TCTTCTCTAGGTGCATCTTAGAGC 59.417 45.833 20.15 0.00 46.10 4.09
225 226 5.761205 ACTCTTCTCTAGGTGCATCTTAGA 58.239 41.667 3.93 6.19 34.37 2.10
226 227 7.575414 TTACTCTTCTCTAGGTGCATCTTAG 57.425 40.000 3.93 3.49 0.00 2.18
227 228 7.956328 TTTACTCTTCTCTAGGTGCATCTTA 57.044 36.000 3.93 0.00 0.00 2.10
228 229 6.859112 TTTACTCTTCTCTAGGTGCATCTT 57.141 37.500 3.93 0.00 0.00 2.40
229 230 8.540507 TTATTTACTCTTCTCTAGGTGCATCT 57.459 34.615 4.13 4.13 0.00 2.90
230 231 9.601217 TTTTATTTACTCTTCTCTAGGTGCATC 57.399 33.333 0.00 0.00 0.00 3.91
232 233 9.959721 AATTTTATTTACTCTTCTCTAGGTGCA 57.040 29.630 0.00 0.00 0.00 4.57
270 271 5.235401 GCTTTTGGAAATTACCTCGCAAAAA 59.765 36.000 0.00 0.00 30.06 1.94
271 272 4.747605 GCTTTTGGAAATTACCTCGCAAAA 59.252 37.500 0.00 0.00 0.00 2.44
272 273 4.202161 TGCTTTTGGAAATTACCTCGCAAA 60.202 37.500 0.00 0.00 0.00 3.68
273 274 3.319405 TGCTTTTGGAAATTACCTCGCAA 59.681 39.130 0.00 0.00 0.00 4.85
274 275 2.887783 TGCTTTTGGAAATTACCTCGCA 59.112 40.909 0.00 0.00 0.00 5.10
275 276 3.569250 TGCTTTTGGAAATTACCTCGC 57.431 42.857 0.00 0.00 0.00 5.03
276 277 6.393720 CAAATGCTTTTGGAAATTACCTCG 57.606 37.500 15.45 0.00 38.85 4.63
302 303 4.893601 TTTCCGTGGTGCGCGTGA 62.894 61.111 8.43 0.00 39.71 4.35
303 304 4.368808 CTTTCCGTGGTGCGCGTG 62.369 66.667 8.43 0.00 39.71 5.34
307 308 2.840066 TTTGCCTTTCCGTGGTGCG 61.840 57.895 0.00 0.00 40.95 5.34
308 309 1.299850 GTTTGCCTTTCCGTGGTGC 60.300 57.895 0.00 0.00 0.00 5.01
309 310 0.248866 GTGTTTGCCTTTCCGTGGTG 60.249 55.000 0.00 0.00 0.00 4.17
310 311 0.681564 TGTGTTTGCCTTTCCGTGGT 60.682 50.000 0.00 0.00 0.00 4.16
311 312 0.030638 CTGTGTTTGCCTTTCCGTGG 59.969 55.000 0.00 0.00 0.00 4.94
312 313 0.030638 CCTGTGTTTGCCTTTCCGTG 59.969 55.000 0.00 0.00 0.00 4.94
313 314 1.734388 GCCTGTGTTTGCCTTTCCGT 61.734 55.000 0.00 0.00 0.00 4.69
314 315 1.007387 GCCTGTGTTTGCCTTTCCG 60.007 57.895 0.00 0.00 0.00 4.30
315 316 1.007387 CGCCTGTGTTTGCCTTTCC 60.007 57.895 0.00 0.00 0.00 3.13
316 317 1.007387 CCGCCTGTGTTTGCCTTTC 60.007 57.895 0.00 0.00 0.00 2.62
317 318 1.454847 TCCGCCTGTGTTTGCCTTT 60.455 52.632 0.00 0.00 0.00 3.11
318 319 1.898574 CTCCGCCTGTGTTTGCCTT 60.899 57.895 0.00 0.00 0.00 4.35
319 320 2.281761 CTCCGCCTGTGTTTGCCT 60.282 61.111 0.00 0.00 0.00 4.75
320 321 2.594592 ACTCCGCCTGTGTTTGCC 60.595 61.111 0.00 0.00 0.00 4.52
321 322 1.891919 TGACTCCGCCTGTGTTTGC 60.892 57.895 0.00 0.00 0.00 3.68
322 323 1.831389 CGTGACTCCGCCTGTGTTTG 61.831 60.000 0.00 0.00 0.00 2.93
323 324 1.594293 CGTGACTCCGCCTGTGTTT 60.594 57.895 0.00 0.00 0.00 2.83
324 325 2.029073 CGTGACTCCGCCTGTGTT 59.971 61.111 0.00 0.00 0.00 3.32
325 326 3.991051 CCGTGACTCCGCCTGTGT 61.991 66.667 0.00 0.00 0.00 3.72
326 327 3.680786 TCCGTGACTCCGCCTGTG 61.681 66.667 0.00 0.00 0.00 3.66
327 328 3.681835 GTCCGTGACTCCGCCTGT 61.682 66.667 0.00 0.00 0.00 4.00
328 329 4.436998 GGTCCGTGACTCCGCCTG 62.437 72.222 4.41 0.00 32.47 4.85
329 330 4.988716 TGGTCCGTGACTCCGCCT 62.989 66.667 4.41 0.00 32.47 5.52
330 331 3.771160 ATGGTCCGTGACTCCGCC 61.771 66.667 4.41 0.00 32.47 6.13
331 332 2.501223 TTCATGGTCCGTGACTCCGC 62.501 60.000 13.65 0.00 32.47 5.54
332 333 0.175760 ATTCATGGTCCGTGACTCCG 59.824 55.000 13.65 0.00 32.47 4.63
333 334 1.207089 TGATTCATGGTCCGTGACTCC 59.793 52.381 22.34 12.12 31.06 3.85
334 335 2.672961 TGATTCATGGTCCGTGACTC 57.327 50.000 19.76 19.76 32.21 3.36
335 336 3.273434 CAATGATTCATGGTCCGTGACT 58.727 45.455 13.65 8.51 32.47 3.41
336 337 2.355756 CCAATGATTCATGGTCCGTGAC 59.644 50.000 13.65 4.12 0.00 3.67
337 338 2.238395 TCCAATGATTCATGGTCCGTGA 59.762 45.455 9.90 9.90 0.00 4.35
338 339 2.615447 CTCCAATGATTCATGGTCCGTG 59.385 50.000 4.52 4.52 0.00 4.94
339 340 2.239654 ACTCCAATGATTCATGGTCCGT 59.760 45.455 0.00 2.27 0.00 4.69
340 341 2.615447 CACTCCAATGATTCATGGTCCG 59.385 50.000 0.00 1.77 0.00 4.79
341 342 2.954318 CCACTCCAATGATTCATGGTCC 59.046 50.000 0.00 0.00 0.00 4.46
342 343 2.360165 GCCACTCCAATGATTCATGGTC 59.640 50.000 0.00 0.00 0.00 4.02
343 344 2.381911 GCCACTCCAATGATTCATGGT 58.618 47.619 0.00 0.00 0.00 3.55
344 345 1.335810 CGCCACTCCAATGATTCATGG 59.664 52.381 0.00 4.60 0.00 3.66
345 346 2.019249 ACGCCACTCCAATGATTCATG 58.981 47.619 0.00 0.00 0.00 3.07
346 347 2.019249 CACGCCACTCCAATGATTCAT 58.981 47.619 0.00 0.00 0.00 2.57
347 348 1.452110 CACGCCACTCCAATGATTCA 58.548 50.000 0.00 0.00 0.00 2.57
348 349 0.734889 CCACGCCACTCCAATGATTC 59.265 55.000 0.00 0.00 0.00 2.52
349 350 0.327924 TCCACGCCACTCCAATGATT 59.672 50.000 0.00 0.00 0.00 2.57
350 351 0.107508 CTCCACGCCACTCCAATGAT 60.108 55.000 0.00 0.00 0.00 2.45
351 352 1.296392 CTCCACGCCACTCCAATGA 59.704 57.895 0.00 0.00 0.00 2.57
352 353 0.249120 TACTCCACGCCACTCCAATG 59.751 55.000 0.00 0.00 0.00 2.82
353 354 0.537188 CTACTCCACGCCACTCCAAT 59.463 55.000 0.00 0.00 0.00 3.16
354 355 0.830444 ACTACTCCACGCCACTCCAA 60.830 55.000 0.00 0.00 0.00 3.53
355 356 1.228769 ACTACTCCACGCCACTCCA 60.229 57.895 0.00 0.00 0.00 3.86
356 357 1.215647 CACTACTCCACGCCACTCC 59.784 63.158 0.00 0.00 0.00 3.85
357 358 1.446272 GCACTACTCCACGCCACTC 60.446 63.158 0.00 0.00 0.00 3.51
358 359 2.657237 GCACTACTCCACGCCACT 59.343 61.111 0.00 0.00 0.00 4.00
359 360 2.809601 CGCACTACTCCACGCCAC 60.810 66.667 0.00 0.00 0.00 5.01
360 361 3.299977 ACGCACTACTCCACGCCA 61.300 61.111 0.00 0.00 0.00 5.69
361 362 2.809601 CACGCACTACTCCACGCC 60.810 66.667 0.00 0.00 0.00 5.68
362 363 2.809601 CCACGCACTACTCCACGC 60.810 66.667 0.00 0.00 0.00 5.34
363 364 0.599204 AAACCACGCACTACTCCACG 60.599 55.000 0.00 0.00 0.00 4.94
364 365 1.145803 GAAACCACGCACTACTCCAC 58.854 55.000 0.00 0.00 0.00 4.02
365 366 1.045407 AGAAACCACGCACTACTCCA 58.955 50.000 0.00 0.00 0.00 3.86
397 398 0.318762 GACTTGGAGTCTGCGGAGTT 59.681 55.000 3.90 0.00 41.88 3.01
398 399 0.827925 TGACTTGGAGTCTGCGGAGT 60.828 55.000 1.39 1.39 45.27 3.85
400 401 0.318441 CTTGACTTGGAGTCTGCGGA 59.682 55.000 9.27 0.00 45.27 5.54
401 402 0.671781 CCTTGACTTGGAGTCTGCGG 60.672 60.000 9.27 0.00 45.27 5.69
402 403 1.294659 GCCTTGACTTGGAGTCTGCG 61.295 60.000 9.27 0.00 45.27 5.18
403 404 0.036022 AGCCTTGACTTGGAGTCTGC 59.964 55.000 9.27 8.91 45.27 4.26
404 405 1.610102 CCAGCCTTGACTTGGAGTCTG 60.610 57.143 9.27 3.10 45.27 3.51
405 406 0.689623 CCAGCCTTGACTTGGAGTCT 59.310 55.000 9.27 0.00 45.27 3.24
406 407 0.398318 ACCAGCCTTGACTTGGAGTC 59.602 55.000 1.21 1.21 45.26 3.36
407 408 0.398318 GACCAGCCTTGACTTGGAGT 59.602 55.000 0.00 0.00 35.89 3.85
408 409 0.671781 CGACCAGCCTTGACTTGGAG 60.672 60.000 0.00 0.00 35.89 3.86
409 410 1.371183 CGACCAGCCTTGACTTGGA 59.629 57.895 0.00 0.00 35.89 3.53
410 411 0.951040 GACGACCAGCCTTGACTTGG 60.951 60.000 0.00 0.00 37.98 3.61
411 412 0.951040 GGACGACCAGCCTTGACTTG 60.951 60.000 0.00 0.00 35.97 3.16
412 413 1.122019 AGGACGACCAGCCTTGACTT 61.122 55.000 6.71 0.00 38.94 3.01
413 414 1.534235 AGGACGACCAGCCTTGACT 60.534 57.895 6.71 0.00 38.94 3.41
414 415 1.079750 GAGGACGACCAGCCTTGAC 60.080 63.158 6.71 0.00 38.94 3.18
415 416 2.283529 GGAGGACGACCAGCCTTGA 61.284 63.158 6.71 0.00 38.94 3.02
416 417 1.903877 ATGGAGGACGACCAGCCTTG 61.904 60.000 6.71 0.00 40.89 3.61
417 418 1.201429 AATGGAGGACGACCAGCCTT 61.201 55.000 6.71 2.82 40.89 4.35
418 419 1.613630 AATGGAGGACGACCAGCCT 60.614 57.895 6.71 0.00 40.89 4.58
419 420 1.450312 CAATGGAGGACGACCAGCC 60.450 63.158 6.71 7.75 40.89 4.85
420 421 0.741221 GACAATGGAGGACGACCAGC 60.741 60.000 6.71 0.00 40.89 4.85
446 447 4.129148 ATGCGGAGGGGGAAAGGC 62.129 66.667 0.00 0.00 0.00 4.35
450 451 2.768344 GGAGATGCGGAGGGGGAA 60.768 66.667 0.00 0.00 0.00 3.97
451 452 4.088351 TGGAGATGCGGAGGGGGA 62.088 66.667 0.00 0.00 0.00 4.81
462 463 1.632740 GGAGGGTAGGGGTGGAGAT 59.367 63.158 0.00 0.00 0.00 2.75
511 548 1.448717 GCGGGCAGGAGAAGAACTC 60.449 63.158 0.00 0.00 44.24 3.01
539 576 1.880027 GGTCAAGCGTCAAAGAATGGT 59.120 47.619 0.00 0.00 0.00 3.55
544 581 0.319555 CGGAGGTCAAGCGTCAAAGA 60.320 55.000 0.00 0.00 33.92 2.52
580 623 2.465010 TACCTTTCTCTGCCGGGGGA 62.465 60.000 2.18 0.00 0.00 4.81
655 741 6.422333 TCTATGGAGGATACAGATCTAGCAG 58.578 44.000 0.00 0.00 41.41 4.24
665 751 8.068110 CCCCTAATTAGATCTATGGAGGATACA 58.932 40.741 14.28 0.00 41.41 2.29
716 932 2.418976 GCGGACCTTTGTTCTCCATTAC 59.581 50.000 0.00 0.00 0.00 1.89
737 955 6.613755 TCTAAAAAGACTGAAAGAAACGGG 57.386 37.500 0.00 0.00 37.43 5.28
751 976 6.675026 TGAAAGAGACGTCGATCTAAAAAGA 58.325 36.000 10.46 0.00 0.00 2.52
959 1438 5.104900 AGGTGTTATTCTCCTGAAGCGTAAT 60.105 40.000 0.00 0.00 38.44 1.89
1048 1593 1.581934 TCCACACTTTTGTCGAGCAG 58.418 50.000 0.00 0.00 31.66 4.24
1057 1602 0.682852 TCGACGGGATCCACACTTTT 59.317 50.000 15.23 0.00 0.00 2.27
1071 1616 1.475441 GCGAGAAAGGCAGATCGACG 61.475 60.000 5.75 0.00 37.35 5.12
1129 1674 3.061848 CCCGCCACTGCCGATTTT 61.062 61.111 0.00 0.00 0.00 1.82
1202 1756 4.081254 ACTGCATCAGCTAGATTGTCTTCA 60.081 41.667 0.00 0.00 42.74 3.02
1204 1758 4.484537 ACTGCATCAGCTAGATTGTCTT 57.515 40.909 0.00 0.00 42.74 3.01
1220 1796 3.528532 CTGCATCTCACATAGAACTGCA 58.471 45.455 0.00 3.94 44.28 4.41
1221 1797 2.871022 CCTGCATCTCACATAGAACTGC 59.129 50.000 0.00 0.00 39.63 4.40
1244 1820 0.319211 TACGACCACTTGGAAGCACG 60.319 55.000 1.14 2.78 38.94 5.34
1397 1973 0.248661 CCTCGTACAGCCTCATCACG 60.249 60.000 0.00 0.00 0.00 4.35
1405 1981 3.851128 GCCTCCCCTCGTACAGCC 61.851 72.222 0.00 0.00 0.00 4.85
1512 2088 4.158394 TGCAAGAAAAAGCTATAAGGCCAG 59.842 41.667 5.01 0.00 0.00 4.85
1514 2090 4.718940 TGCAAGAAAAAGCTATAAGGCC 57.281 40.909 0.00 0.00 0.00 5.19
1580 2159 6.375455 AGAAGAGTGGCAACCAATAAATACTG 59.625 38.462 0.00 0.00 34.18 2.74
1686 2335 7.935210 GGATGAGAAATCAAAATATGCCCAAAT 59.065 33.333 0.00 0.00 0.00 2.32
1743 2395 7.441017 AGCTCTATTCACAACAGAGGATATTC 58.559 38.462 0.00 0.00 37.00 1.75
1750 2424 6.975197 TCGATTAAGCTCTATTCACAACAGAG 59.025 38.462 0.00 0.00 39.06 3.35
1760 2434 5.854010 TGGTCACTCGATTAAGCTCTATT 57.146 39.130 0.00 0.00 0.00 1.73
1795 2469 4.343231 TGGCTTGGAAAATTGAGATGCTA 58.657 39.130 0.00 0.00 0.00 3.49
1846 2530 5.452078 ACCGCTTCATTTGAAAATTCAGA 57.548 34.783 0.00 0.00 38.61 3.27
1856 2540 3.195661 GGAGTAGGTACCGCTTCATTTG 58.804 50.000 6.18 0.00 0.00 2.32
1865 2549 2.022934 GAACAGAGGGAGTAGGTACCG 58.977 57.143 6.18 0.00 0.00 4.02
1870 2554 4.202367 ACAAAAGTGAACAGAGGGAGTAGG 60.202 45.833 0.00 0.00 0.00 3.18
1876 2560 4.211374 CGACTTACAAAAGTGAACAGAGGG 59.789 45.833 0.00 0.00 46.09 4.30
1877 2561 4.809426 ACGACTTACAAAAGTGAACAGAGG 59.191 41.667 0.00 0.00 46.09 3.69
1878 2562 5.968387 ACGACTTACAAAAGTGAACAGAG 57.032 39.130 0.00 0.00 46.09 3.35
1879 2563 6.730960 AAACGACTTACAAAAGTGAACAGA 57.269 33.333 0.00 0.00 46.09 3.41
1880 2564 7.010738 TCCTAAACGACTTACAAAAGTGAACAG 59.989 37.037 0.00 0.00 46.09 3.16
1881 2565 6.817641 TCCTAAACGACTTACAAAAGTGAACA 59.182 34.615 0.00 0.00 46.09 3.18
1882 2566 7.121911 GTCCTAAACGACTTACAAAAGTGAAC 58.878 38.462 0.00 0.00 46.09 3.18
1883 2567 6.817641 TGTCCTAAACGACTTACAAAAGTGAA 59.182 34.615 0.00 0.00 46.09 3.18
1884 2568 6.339730 TGTCCTAAACGACTTACAAAAGTGA 58.660 36.000 0.00 0.00 46.09 3.41
1885 2569 6.592798 TGTCCTAAACGACTTACAAAAGTG 57.407 37.500 0.00 0.00 46.09 3.16
1887 2571 5.465724 AGCTGTCCTAAACGACTTACAAAAG 59.534 40.000 0.00 0.00 38.77 2.27
1888 2572 5.235616 CAGCTGTCCTAAACGACTTACAAAA 59.764 40.000 5.25 0.00 33.70 2.44
1889 2573 4.748102 CAGCTGTCCTAAACGACTTACAAA 59.252 41.667 5.25 0.00 33.70 2.83
1890 2574 4.038282 TCAGCTGTCCTAAACGACTTACAA 59.962 41.667 14.67 0.00 33.70 2.41
1891 2575 3.570975 TCAGCTGTCCTAAACGACTTACA 59.429 43.478 14.67 0.00 33.70 2.41
1892 2576 4.170292 TCAGCTGTCCTAAACGACTTAC 57.830 45.455 14.67 0.00 33.70 2.34
1893 2577 4.859304 TTCAGCTGTCCTAAACGACTTA 57.141 40.909 14.67 0.00 33.70 2.24
1894 2578 3.746045 TTCAGCTGTCCTAAACGACTT 57.254 42.857 14.67 0.00 33.70 3.01
1895 2579 3.746045 TTTCAGCTGTCCTAAACGACT 57.254 42.857 14.67 0.00 33.70 4.18
1896 2580 4.451096 TCAATTTCAGCTGTCCTAAACGAC 59.549 41.667 14.67 0.00 0.00 4.34
1897 2581 4.637276 TCAATTTCAGCTGTCCTAAACGA 58.363 39.130 14.67 4.79 0.00 3.85
1898 2582 5.049405 AGTTCAATTTCAGCTGTCCTAAACG 60.049 40.000 14.67 2.54 0.00 3.60
1899 2583 6.145535 CAGTTCAATTTCAGCTGTCCTAAAC 58.854 40.000 14.67 11.99 0.00 2.01
1900 2584 5.827797 ACAGTTCAATTTCAGCTGTCCTAAA 59.172 36.000 14.67 7.20 35.78 1.85
1901 2585 5.376625 ACAGTTCAATTTCAGCTGTCCTAA 58.623 37.500 14.67 4.81 35.78 2.69
1902 2586 4.973168 ACAGTTCAATTTCAGCTGTCCTA 58.027 39.130 14.67 0.00 35.78 2.94
1903 2587 3.825328 ACAGTTCAATTTCAGCTGTCCT 58.175 40.909 14.67 0.00 35.78 3.85
1904 2588 4.574599 AACAGTTCAATTTCAGCTGTCC 57.425 40.909 14.67 0.00 39.19 4.02
1905 2589 6.638468 CCTAAAACAGTTCAATTTCAGCTGTC 59.362 38.462 14.67 0.00 39.19 3.51
1906 2590 6.096846 ACCTAAAACAGTTCAATTTCAGCTGT 59.903 34.615 14.67 0.00 41.51 4.40
1907 2591 6.418819 CACCTAAAACAGTTCAATTTCAGCTG 59.581 38.462 7.63 7.63 0.00 4.24
1908 2592 6.507023 CACCTAAAACAGTTCAATTTCAGCT 58.493 36.000 0.00 0.00 0.00 4.24
1909 2593 5.175673 GCACCTAAAACAGTTCAATTTCAGC 59.824 40.000 0.00 0.00 0.00 4.26
1910 2594 6.507023 AGCACCTAAAACAGTTCAATTTCAG 58.493 36.000 0.00 0.00 0.00 3.02
1911 2595 6.463995 AGCACCTAAAACAGTTCAATTTCA 57.536 33.333 0.00 0.00 0.00 2.69
1912 2596 8.515414 AGATAGCACCTAAAACAGTTCAATTTC 58.485 33.333 0.00 0.00 0.00 2.17
1913 2597 8.409358 AGATAGCACCTAAAACAGTTCAATTT 57.591 30.769 0.00 0.00 0.00 1.82
1914 2598 8.409358 AAGATAGCACCTAAAACAGTTCAATT 57.591 30.769 0.00 0.00 0.00 2.32
1915 2599 9.515226 TTAAGATAGCACCTAAAACAGTTCAAT 57.485 29.630 0.00 0.00 0.00 2.57
1916 2600 8.911918 TTAAGATAGCACCTAAAACAGTTCAA 57.088 30.769 0.00 0.00 0.00 2.69
1917 2601 8.911918 TTTAAGATAGCACCTAAAACAGTTCA 57.088 30.769 0.00 0.00 0.00 3.18
1918 2602 9.774742 CATTTAAGATAGCACCTAAAACAGTTC 57.225 33.333 0.00 0.00 0.00 3.01
1919 2603 9.297037 ACATTTAAGATAGCACCTAAAACAGTT 57.703 29.630 0.00 0.00 0.00 3.16
1920 2604 8.863872 ACATTTAAGATAGCACCTAAAACAGT 57.136 30.769 0.00 0.00 0.00 3.55
1921 2605 9.167311 AGACATTTAAGATAGCACCTAAAACAG 57.833 33.333 0.00 0.00 0.00 3.16
1927 2611 9.778741 CCATTTAGACATTTAAGATAGCACCTA 57.221 33.333 0.00 0.00 0.00 3.08
1928 2612 8.275040 ACCATTTAGACATTTAAGATAGCACCT 58.725 33.333 0.00 0.00 0.00 4.00
1929 2613 8.451908 ACCATTTAGACATTTAAGATAGCACC 57.548 34.615 0.00 0.00 0.00 5.01
1930 2614 9.331282 AGACCATTTAGACATTTAAGATAGCAC 57.669 33.333 0.00 0.00 0.00 4.40
1931 2615 9.905713 AAGACCATTTAGACATTTAAGATAGCA 57.094 29.630 0.00 0.00 0.00 3.49
1940 2624 9.965824 CACTTTTGTAAGACCATTTAGACATTT 57.034 29.630 0.00 0.00 35.30 2.32
1941 2625 9.349713 TCACTTTTGTAAGACCATTTAGACATT 57.650 29.630 0.00 0.00 35.30 2.71
1942 2626 8.918202 TCACTTTTGTAAGACCATTTAGACAT 57.082 30.769 0.00 0.00 35.30 3.06
1943 2627 8.740123 TTCACTTTTGTAAGACCATTTAGACA 57.260 30.769 0.00 0.00 35.30 3.41
1944 2628 9.612620 CATTCACTTTTGTAAGACCATTTAGAC 57.387 33.333 0.00 0.00 35.30 2.59
1945 2629 8.792633 CCATTCACTTTTGTAAGACCATTTAGA 58.207 33.333 0.00 0.00 35.30 2.10
1946 2630 8.792633 TCCATTCACTTTTGTAAGACCATTTAG 58.207 33.333 0.00 0.00 35.30 1.85
1947 2631 8.698973 TCCATTCACTTTTGTAAGACCATTTA 57.301 30.769 0.00 0.00 35.30 1.40
1948 2632 7.255942 CCTCCATTCACTTTTGTAAGACCATTT 60.256 37.037 0.00 0.00 35.30 2.32
1949 2633 6.209391 CCTCCATTCACTTTTGTAAGACCATT 59.791 38.462 0.00 0.00 35.30 3.16
1950 2634 5.711976 CCTCCATTCACTTTTGTAAGACCAT 59.288 40.000 0.00 0.00 35.30 3.55
1951 2635 5.070001 CCTCCATTCACTTTTGTAAGACCA 58.930 41.667 0.00 0.00 35.30 4.02
1952 2636 4.459337 CCCTCCATTCACTTTTGTAAGACC 59.541 45.833 0.00 0.00 35.30 3.85
1953 2637 5.313712 TCCCTCCATTCACTTTTGTAAGAC 58.686 41.667 0.00 0.00 35.30 3.01
1954 2638 5.073144 ACTCCCTCCATTCACTTTTGTAAGA 59.927 40.000 0.00 0.00 35.30 2.10
1955 2639 5.316987 ACTCCCTCCATTCACTTTTGTAAG 58.683 41.667 0.00 0.00 37.40 2.34
1956 2640 5.319043 ACTCCCTCCATTCACTTTTGTAA 57.681 39.130 0.00 0.00 0.00 2.41
1957 2641 4.993705 ACTCCCTCCATTCACTTTTGTA 57.006 40.909 0.00 0.00 0.00 2.41
1958 2642 3.884037 ACTCCCTCCATTCACTTTTGT 57.116 42.857 0.00 0.00 0.00 2.83
1959 2643 4.911390 AGTACTCCCTCCATTCACTTTTG 58.089 43.478 0.00 0.00 0.00 2.44
1960 2644 5.584551 AAGTACTCCCTCCATTCACTTTT 57.415 39.130 0.00 0.00 0.00 2.27
1961 2645 5.584551 AAAGTACTCCCTCCATTCACTTT 57.415 39.130 0.00 0.00 31.70 2.66
1962 2646 5.584551 AAAAGTACTCCCTCCATTCACTT 57.415 39.130 0.00 0.00 0.00 3.16
1963 2647 5.584551 AAAAAGTACTCCCTCCATTCACT 57.415 39.130 0.00 0.00 0.00 3.41
2022 2711 4.594970 TGAAGGAAGTTCTGGAAACACAA 58.405 39.130 2.25 0.00 35.99 3.33
2072 2771 0.248215 CTTCGTGAATGATTGCCCGC 60.248 55.000 0.00 0.00 0.00 6.13
2100 2808 1.656652 CGGTGGGATAAGCAGTTCAG 58.343 55.000 0.00 0.00 0.00 3.02
2224 2936 9.851686 AATATGCTGTTGGTGAAGATAATCTAA 57.148 29.630 0.00 0.00 0.00 2.10
2648 3377 7.872993 TCTGCTAAACATGTTATCTATAGTGGC 59.127 37.037 12.39 7.71 0.00 5.01
2659 3392 6.701145 TTGTGGTTTCTGCTAAACATGTTA 57.299 33.333 12.39 0.00 32.04 2.41
2687 3420 1.134670 CGGGTTGCACTTTTTCCCAAA 60.135 47.619 0.00 0.00 38.15 3.28
2738 3472 7.424227 TCAAATCTTGTCATTTGCAAATTCC 57.576 32.000 21.95 14.97 41.65 3.01
2907 3863 9.584008 AAGAAGGATGACATGCATTTAGAATAT 57.416 29.630 9.80 0.00 37.34 1.28
2925 3881 7.191593 ACCGTGGTTAGTTATAAAGAAGGAT 57.808 36.000 0.00 0.00 0.00 3.24
2946 3905 5.123186 TCAACTACCTGCAATTTGATAACCG 59.877 40.000 0.00 0.00 0.00 4.44
2978 3938 2.566824 ATGTCCCAAACATGTCCGC 58.433 52.632 0.00 0.00 47.00 5.54
3118 4078 4.653341 ACAGACCAATTTGAAATTCCCACA 59.347 37.500 0.00 0.00 0.00 4.17
3123 4083 7.382218 CACCTGTAACAGACCAATTTGAAATTC 59.618 37.037 0.00 0.00 32.44 2.17
3146 4106 3.767673 TCTGTTGAGGTACCTACATCACC 59.232 47.826 16.29 1.63 45.27 4.02
3219 4179 2.571202 TGGCCATGACACATCACTAGAA 59.429 45.455 0.00 0.00 37.79 2.10
3249 4209 6.348704 GGCAATGCTTATCTGCAACAAAAATT 60.349 34.615 4.82 0.00 46.61 1.82
3323 4283 1.543802 GTCCAATTTGCCATCGTCCAA 59.456 47.619 0.00 0.00 0.00 3.53
3324 4284 1.173043 GTCCAATTTGCCATCGTCCA 58.827 50.000 0.00 0.00 0.00 4.02
3325 4285 0.098728 CGTCCAATTTGCCATCGTCC 59.901 55.000 0.00 0.00 0.00 4.79
3326 4286 1.083489 TCGTCCAATTTGCCATCGTC 58.917 50.000 0.00 0.00 0.00 4.20
3327 4287 1.401552 CATCGTCCAATTTGCCATCGT 59.598 47.619 0.00 0.00 0.00 3.73
3331 4291 0.897401 TGCCATCGTCCAATTTGCCA 60.897 50.000 0.00 0.00 0.00 4.92
3332 4292 0.246086 TTGCCATCGTCCAATTTGCC 59.754 50.000 0.00 0.00 0.00 4.52
3333 4293 2.077413 TTTGCCATCGTCCAATTTGC 57.923 45.000 0.00 0.00 0.00 3.68
3334 4294 4.244066 TCAATTTGCCATCGTCCAATTTG 58.756 39.130 0.00 0.00 35.37 2.32
3335 4295 4.497300 CTCAATTTGCCATCGTCCAATTT 58.503 39.130 0.00 0.00 0.00 1.82
3336 4296 3.676873 GCTCAATTTGCCATCGTCCAATT 60.677 43.478 0.00 0.00 0.00 2.32
3338 4298 1.202114 GCTCAATTTGCCATCGTCCAA 59.798 47.619 0.00 0.00 0.00 3.53
3339 4299 0.810648 GCTCAATTTGCCATCGTCCA 59.189 50.000 0.00 0.00 0.00 4.02
3398 4379 2.961741 GCTCATCAGTCATCACCCTAGA 59.038 50.000 0.00 0.00 0.00 2.43
3405 4386 2.367894 GGAGGATGCTCATCAGTCATCA 59.632 50.000 16.72 0.00 39.54 3.07
3406 4387 2.367894 TGGAGGATGCTCATCAGTCATC 59.632 50.000 16.72 0.00 39.54 2.92
3407 4388 2.405559 TGGAGGATGCTCATCAGTCAT 58.594 47.619 16.72 0.00 39.54 3.06
3408 4389 1.870064 TGGAGGATGCTCATCAGTCA 58.130 50.000 16.72 0.47 39.54 3.41
3409 4390 2.550423 CCATGGAGGATGCTCATCAGTC 60.550 54.545 16.72 7.35 41.22 3.51
3410 4391 1.420514 CCATGGAGGATGCTCATCAGT 59.579 52.381 16.72 0.00 41.22 3.41
3411 4392 1.882780 GCCATGGAGGATGCTCATCAG 60.883 57.143 18.40 3.10 41.22 2.90
3451 4432 9.282247 CTAAATAACTCGTATTGTACTCGTTGT 57.718 33.333 0.00 0.00 32.47 3.32
3524 4508 0.103755 CAGCTCATCCGCTAGCTTCA 59.896 55.000 13.93 0.00 46.82 3.02
3553 4537 3.508402 TCACCACTAGCGACAGAATTACA 59.492 43.478 0.00 0.00 0.00 2.41
3573 4557 7.157347 GTGTGATAGAATTATCCATCAGCTCA 58.843 38.462 0.00 0.00 34.91 4.26
3574 4558 6.593382 GGTGTGATAGAATTATCCATCAGCTC 59.407 42.308 0.00 0.00 34.91 4.09
3623 4607 0.397816 ATCCTCCTTCTCCACCTCCG 60.398 60.000 0.00 0.00 0.00 4.63
3681 4665 3.149196 CACCACAGTAGGCAAACTCATT 58.851 45.455 0.00 0.00 0.00 2.57
3823 4813 6.962182 TCATCCATCAACTTTAGTTCATCCT 58.038 36.000 0.00 0.00 35.83 3.24
3933 4923 0.884704 GCCACACTCACGGTTGATGT 60.885 55.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.