Multiple sequence alignment - TraesCS4A01G466600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G466600 chr4A 100.000 5421 0 0 1 5421 729314167 729308747 0.000000e+00 9974.0
1 TraesCS4A01G466600 chr4A 91.956 2710 187 11 2719 5421 730621474 730624159 0.000000e+00 3768.0
2 TraesCS4A01G466600 chr4A 92.846 2530 155 8 2895 5421 730489837 730492343 0.000000e+00 3646.0
3 TraesCS4A01G466600 chr4A 94.733 1386 54 8 3753 5129 731090443 731089068 0.000000e+00 2137.0
4 TraesCS4A01G466600 chr4A 92.790 1387 77 14 17 1400 731094376 731093010 0.000000e+00 1986.0
5 TraesCS4A01G466600 chr4A 90.402 1417 113 14 1 1400 730620066 730621476 0.000000e+00 1842.0
6 TraesCS4A01G466600 chr4A 89.399 1415 107 19 1 1400 730568050 730569436 0.000000e+00 1742.0
7 TraesCS4A01G466600 chr4A 95.463 1058 40 1 2719 3768 731093012 731091955 0.000000e+00 1681.0
8 TraesCS4A01G466600 chr4A 89.210 899 74 14 1 882 730488366 730489258 0.000000e+00 1101.0
9 TraesCS4A01G466600 chr4A 89.766 684 57 3 4738 5421 730571001 730571671 0.000000e+00 863.0
10 TraesCS4A01G466600 chr4A 96.350 274 10 0 5148 5421 731087589 731087316 8.280000e-123 451.0
11 TraesCS4A01G466600 chr4A 87.187 359 44 2 2719 3076 730569434 730569791 1.820000e-109 407.0
12 TraesCS4A01G466600 chrUn 92.854 2407 146 8 2719 5121 340432583 340434967 0.000000e+00 3469.0
13 TraesCS4A01G466600 chrUn 99.203 251 2 0 1401 1651 41189207 41188957 2.300000e-123 453.0
14 TraesCS4A01G466600 chrUn 97.059 34 1 0 3859 3892 270733600 270733567 2.110000e-04 58.4
15 TraesCS4A01G466600 chrUn 97.059 34 1 0 3859 3892 282197338 282197371 2.110000e-04 58.4
16 TraesCS4A01G466600 chr3A 99.055 1058 7 3 1662 2718 710647396 710648451 0.000000e+00 1895.0
17 TraesCS4A01G466600 chr3A 99.206 252 2 0 1400 1651 710646821 710647072 6.400000e-124 455.0
18 TraesCS4A01G466600 chr2B 98.959 1057 7 3 1662 2718 638004316 638003264 0.000000e+00 1888.0
19 TraesCS4A01G466600 chr2B 98.869 1061 6 4 1662 2721 768656271 768655216 0.000000e+00 1888.0
20 TraesCS4A01G466600 chr2B 98.416 1073 8 7 1662 2731 109977114 109978180 0.000000e+00 1879.0
21 TraesCS4A01G466600 chr2B 98.679 1060 10 3 1662 2719 769192578 769193635 0.000000e+00 1877.0
22 TraesCS4A01G466600 chr2B 99.206 252 2 0 1400 1651 541651892 541651641 6.400000e-124 455.0
23 TraesCS4A01G466600 chr6B 98.866 1058 8 3 1662 2718 98070075 98069021 0.000000e+00 1884.0
24 TraesCS4A01G466600 chr7B 98.865 1057 9 2 1662 2718 63579940 63580993 0.000000e+00 1882.0
25 TraesCS4A01G466600 chr7B 98.678 1059 8 5 1662 2718 56513548 56514602 0.000000e+00 1873.0
26 TraesCS4A01G466600 chr7B 99.206 252 2 0 1400 1651 63579558 63579809 6.400000e-124 455.0
27 TraesCS4A01G466600 chr7B 99.206 252 2 0 1400 1651 684759425 684759676 6.400000e-124 455.0
28 TraesCS4A01G466600 chr7B 99.206 252 2 0 1400 1651 684856108 684855857 6.400000e-124 455.0
29 TraesCS4A01G466600 chr7B 82.812 64 11 0 3859 3922 180040824 180040761 2.110000e-04 58.4
30 TraesCS4A01G466600 chr4B 98.865 1057 9 2 1662 2718 665414741 665415794 0.000000e+00 1882.0
31 TraesCS4A01G466600 chr4B 99.206 252 2 0 1400 1651 665414359 665414610 6.400000e-124 455.0
32 TraesCS4A01G466600 chr3B 99.206 252 2 0 1400 1651 56445480 56445229 6.400000e-124 455.0
33 TraesCS4A01G466600 chr6A 99.203 251 2 0 1401 1651 2526491 2526241 2.300000e-123 453.0
34 TraesCS4A01G466600 chr1B 99.203 251 2 0 1401 1651 2797343 2797093 2.300000e-123 453.0
35 TraesCS4A01G466600 chr7D 87.050 139 15 2 3530 3665 10006764 10006902 2.610000e-33 154.0
36 TraesCS4A01G466600 chr5D 95.833 48 1 1 780 826 213137742 213137695 5.820000e-10 76.8
37 TraesCS4A01G466600 chr5D 95.833 48 1 1 780 826 213152700 213152653 5.820000e-10 76.8
38 TraesCS4A01G466600 chr5B 95.556 45 1 1 781 824 227291569 227291525 2.710000e-08 71.3
39 TraesCS4A01G466600 chr5A 91.667 48 3 1 780 826 276832052 276832099 1.260000e-06 65.8
40 TraesCS4A01G466600 chr7A 97.059 34 1 0 3859 3892 232024974 232025007 2.110000e-04 58.4
41 TraesCS4A01G466600 chr7A 97.059 34 1 0 3859 3892 232058517 232058550 2.110000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G466600 chr4A 729308747 729314167 5420 True 9974.00 9974 100.0000 1 5421 1 chr4A.!!$R1 5420
1 TraesCS4A01G466600 chr4A 730620066 730624159 4093 False 2805.00 3768 91.1790 1 5421 2 chr4A.!!$F3 5420
2 TraesCS4A01G466600 chr4A 730488366 730492343 3977 False 2373.50 3646 91.0280 1 5421 2 chr4A.!!$F1 5420
3 TraesCS4A01G466600 chr4A 731087316 731094376 7060 True 1563.75 2137 94.8340 17 5421 4 chr4A.!!$R2 5404
4 TraesCS4A01G466600 chr4A 730568050 730571671 3621 False 1004.00 1742 88.7840 1 5421 3 chr4A.!!$F2 5420
5 TraesCS4A01G466600 chrUn 340432583 340434967 2384 False 3469.00 3469 92.8540 2719 5121 1 chrUn.!!$F2 2402
6 TraesCS4A01G466600 chr3A 710646821 710648451 1630 False 1175.00 1895 99.1305 1400 2718 2 chr3A.!!$F1 1318
7 TraesCS4A01G466600 chr2B 638003264 638004316 1052 True 1888.00 1888 98.9590 1662 2718 1 chr2B.!!$R2 1056
8 TraesCS4A01G466600 chr2B 768655216 768656271 1055 True 1888.00 1888 98.8690 1662 2721 1 chr2B.!!$R3 1059
9 TraesCS4A01G466600 chr2B 109977114 109978180 1066 False 1879.00 1879 98.4160 1662 2731 1 chr2B.!!$F1 1069
10 TraesCS4A01G466600 chr2B 769192578 769193635 1057 False 1877.00 1877 98.6790 1662 2719 1 chr2B.!!$F2 1057
11 TraesCS4A01G466600 chr6B 98069021 98070075 1054 True 1884.00 1884 98.8660 1662 2718 1 chr6B.!!$R1 1056
12 TraesCS4A01G466600 chr7B 56513548 56514602 1054 False 1873.00 1873 98.6780 1662 2718 1 chr7B.!!$F1 1056
13 TraesCS4A01G466600 chr7B 63579558 63580993 1435 False 1168.50 1882 99.0355 1400 2718 2 chr7B.!!$F3 1318
14 TraesCS4A01G466600 chr4B 665414359 665415794 1435 False 1168.50 1882 99.0355 1400 2718 2 chr4B.!!$F1 1318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
517 530 0.179020 TGGGTTGGTTCTGTGAGCAG 60.179 55.000 0.00 0.0 43.87 4.24 F
523 536 0.321919 GGTTCTGTGAGCAGCATGGA 60.322 55.000 0.00 0.0 42.29 3.41 F
524 537 1.085091 GTTCTGTGAGCAGCATGGAG 58.915 55.000 0.00 0.0 42.29 3.86 F
2600 2937 1.673337 GGGCCTTTAGTCGCGGTTT 60.673 57.895 6.13 0.0 0.00 3.27 F
2757 3095 0.178941 TTCCTATCCTCCTACCCGCC 60.179 60.000 0.00 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2503 2840 0.108520 CTAACCGCGACTAAAGGCCA 60.109 55.000 8.23 0.00 0.00 5.36 R
2600 2937 2.481185 CCTTTAGTCGCGGTTGCTTAAA 59.519 45.455 6.13 2.35 39.65 1.52 R
2757 3095 0.466189 ATGGTAGGGCGGCAATTCTG 60.466 55.000 12.47 0.00 0.00 3.02 R
3859 5735 1.210931 CATGACGTTGCTGGGCTTG 59.789 57.895 0.00 0.00 0.00 4.01 R
4816 6715 1.213296 GAACCCAGGCTCCTTCCATA 58.787 55.000 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 63 2.159282 CGCAGACGTACCTTAATCACCT 60.159 50.000 0.00 0.00 33.53 4.00
166 169 3.057526 GGCTGCTTAATTTGACCGACTTT 60.058 43.478 0.00 0.00 0.00 2.66
195 199 0.879090 GTTGGTGAATTCCCACGTCC 59.121 55.000 13.36 3.52 37.91 4.79
198 202 1.094785 GGTGAATTCCCACGTCCATG 58.905 55.000 2.27 0.00 37.91 3.66
223 227 8.930527 TGAGGTTATGGCTTAAGCTAATTACTA 58.069 33.333 25.88 7.17 46.11 1.82
346 355 3.679083 GCGAGGCTATATCCGGCTATTTT 60.679 47.826 2.61 0.00 37.41 1.82
407 417 1.064758 TCATTTAGCGGCACCCTGATT 60.065 47.619 1.45 0.00 0.00 2.57
419 429 5.130350 GGCACCCTGATTAAACAGCTATAA 58.870 41.667 7.20 0.00 36.67 0.98
420 430 5.008712 GGCACCCTGATTAAACAGCTATAAC 59.991 44.000 7.20 0.00 36.67 1.89
517 530 0.179020 TGGGTTGGTTCTGTGAGCAG 60.179 55.000 0.00 0.00 43.87 4.24
523 536 0.321919 GGTTCTGTGAGCAGCATGGA 60.322 55.000 0.00 0.00 42.29 3.41
524 537 1.085091 GTTCTGTGAGCAGCATGGAG 58.915 55.000 0.00 0.00 42.29 3.86
664 682 9.612620 ACTAATAACATTTTCTTTTTCTCGCTG 57.387 29.630 0.00 0.00 0.00 5.18
717 735 4.997565 AGGACACACATCAACAAACTTTG 58.002 39.130 0.00 0.00 0.00 2.77
793 813 4.099113 TCACCAATGCACTCATTTTGTTGA 59.901 37.500 0.00 0.00 40.74 3.18
826 846 6.245408 TCCATAAGCCAAACTAGTGAACAAT 58.755 36.000 0.00 0.00 0.00 2.71
908 928 3.959478 TCGTGTTGACAGGACAGAC 57.041 52.632 2.65 0.00 36.04 3.51
1068 1088 3.279434 GAGTTCAACAACAGTTGTCCCT 58.721 45.455 19.41 12.01 44.59 4.20
1092 1112 7.201983 CCTCTCCTCATCTCATTCTTGTTCATA 60.202 40.741 0.00 0.00 0.00 2.15
1176 1196 5.097742 TCGATGGTTCCAACATCATAACT 57.902 39.130 2.81 0.00 43.75 2.24
1178 1198 4.635765 CGATGGTTCCAACATCATAACTGT 59.364 41.667 2.81 0.00 43.75 3.55
1294 1314 1.691196 GGCCACATATAGCAAGCCAA 58.309 50.000 0.00 0.00 40.20 4.52
1634 1654 3.336138 AAAGCTCCTCCCTTTTAGTCG 57.664 47.619 0.00 0.00 0.00 4.18
1869 2202 7.804129 TCGAAAAGTTACATCCAAATTTAACCG 59.196 33.333 0.00 0.00 31.25 4.44
1956 2289 6.314152 GGCTTGTAAGATCTAGAGTGGAAAAC 59.686 42.308 0.00 0.00 0.00 2.43
2600 2937 1.673337 GGGCCTTTAGTCGCGGTTT 60.673 57.895 6.13 0.00 0.00 3.27
2757 3095 0.178941 TTCCTATCCTCCTACCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
2857 3195 1.504359 TGGAATTCGACACGTTCCAC 58.496 50.000 13.67 0.00 44.67 4.02
2920 3258 1.519455 CTCCATCAACTCGACCGCC 60.519 63.158 0.00 0.00 0.00 6.13
3260 3598 3.118408 TCCCTCAAAACGTATGATCTGGG 60.118 47.826 15.57 15.57 33.31 4.45
3479 3817 3.276091 CCGCTGCGACCAACAACA 61.276 61.111 25.45 0.00 0.00 3.33
3528 3866 1.005867 GCTTCGGGTCGGTGTACAA 60.006 57.895 0.00 0.00 0.00 2.41
3551 3892 2.046892 CCTTGAGCGACCTGGGTG 60.047 66.667 0.00 0.00 0.00 4.61
3859 5735 2.034879 CGTGGTGCACAGGGATGTC 61.035 63.158 20.43 0.00 33.40 3.06
4108 5984 3.003173 TCCGTCAAGCCCTCCCTG 61.003 66.667 0.00 0.00 0.00 4.45
4314 6199 1.089920 CCATTGCCTGTTCTTCCTCG 58.910 55.000 0.00 0.00 0.00 4.63
4385 6270 2.109126 GCTGATGGTTCGACAGGCC 61.109 63.158 0.00 0.00 33.00 5.19
4458 6346 2.158755 AGTTCCTCCACAACAGGTTGAG 60.159 50.000 18.28 10.49 42.93 3.02
4762 6650 1.341531 CTTCTATCTTCCCCGCATCGT 59.658 52.381 0.00 0.00 0.00 3.73
4783 6671 6.588204 TCGTTAATGCTACATTAATGGACCT 58.412 36.000 22.62 1.15 33.54 3.85
4784 6672 7.051623 TCGTTAATGCTACATTAATGGACCTT 58.948 34.615 22.62 9.52 33.54 3.50
4785 6673 7.554835 TCGTTAATGCTACATTAATGGACCTTT 59.445 33.333 22.62 9.33 33.54 3.11
4786 6674 8.832521 CGTTAATGCTACATTAATGGACCTTTA 58.167 33.333 19.37 8.44 30.71 1.85
4787 6675 9.946165 GTTAATGCTACATTAATGGACCTTTAC 57.054 33.333 19.37 7.79 0.00 2.01
4788 6676 9.688091 TTAATGCTACATTAATGGACCTTTACA 57.312 29.630 19.37 6.53 0.00 2.41
4789 6677 7.807977 ATGCTACATTAATGGACCTTTACAG 57.192 36.000 19.37 0.00 0.00 2.74
4791 6679 5.531287 GCTACATTAATGGACCTTTACAGGG 59.469 44.000 19.37 0.00 46.01 4.45
4792 6680 4.867086 ACATTAATGGACCTTTACAGGGG 58.133 43.478 19.37 0.00 46.01 4.79
4793 6681 4.293901 ACATTAATGGACCTTTACAGGGGT 59.706 41.667 19.37 0.00 46.01 4.95
4816 6715 9.690913 GGGTTTTACAGGGTTAGTTTTAGATAT 57.309 33.333 0.00 0.00 0.00 1.63
4833 6732 2.815357 TATATGGAAGGAGCCTGGGT 57.185 50.000 0.00 0.00 0.00 4.51
4963 6862 2.224426 ACAACGAGCTTGGGTATTGACA 60.224 45.455 5.79 0.00 33.66 3.58
5023 6922 4.786425 ACTCTTCCCTTGGCAATATCTTC 58.214 43.478 0.00 0.00 0.00 2.87
5036 6935 5.241662 GCAATATCTTCTACTCCATGGTCC 58.758 45.833 12.58 0.00 0.00 4.46
5039 6938 2.656002 TCTTCTACTCCATGGTCCTCG 58.344 52.381 12.58 0.00 0.00 4.63
5052 6951 3.950397 TGGTCCTCGTTATGCTTCAATT 58.050 40.909 0.00 0.00 0.00 2.32
5106 7005 1.566404 CGTTGCATAGTGGCGTGATA 58.434 50.000 0.00 0.00 36.28 2.15
5121 7020 2.437716 ATAGCGGCGTTTGGTGGG 60.438 61.111 9.37 0.00 0.00 4.61
5144 7043 0.394352 CCCAGTGGCCTAATGTGGTC 60.394 60.000 3.32 0.00 0.00 4.02
5215 8574 0.950836 TGTTGCTTGCTATGCACGTT 59.049 45.000 0.00 0.00 38.71 3.99
5288 8647 8.124823 ACGACAACTATTAGCATCAAATCATTG 58.875 33.333 0.00 0.00 37.92 2.82
5399 8758 0.541863 CCAAGTATTCTGCTCCCGGT 59.458 55.000 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 48 5.235516 AGTTGAACAGGTGATTAAGGTACG 58.764 41.667 0.00 0.00 0.00 3.67
49 52 6.391227 AACAAGTTGAACAGGTGATTAAGG 57.609 37.500 10.54 0.00 0.00 2.69
50 53 6.438763 GGAACAAGTTGAACAGGTGATTAAG 58.561 40.000 10.54 0.00 0.00 1.85
166 169 2.380064 ATTCACCAACCCTGCAGAAA 57.620 45.000 17.39 0.00 0.00 2.52
195 199 7.516198 AATTAGCTTAAGCCATAACCTCATG 57.484 36.000 23.71 0.00 43.38 3.07
198 202 9.945904 ATAGTAATTAGCTTAAGCCATAACCTC 57.054 33.333 23.71 9.99 43.38 3.85
238 242 6.852404 ACAATGGGCAATACTTGGATATAGT 58.148 36.000 0.00 0.00 0.00 2.12
255 259 2.872038 GCCCGCTATCTAAGACAATGGG 60.872 54.545 0.00 0.00 37.19 4.00
290 294 2.575279 ACAGCTGATTTGGAGGATCACT 59.425 45.455 23.35 0.00 36.25 3.41
292 296 2.419159 CGACAGCTGATTTGGAGGATCA 60.419 50.000 23.35 0.00 36.25 2.92
357 366 9.605275 GCTAGAGGATCATGTATAATTATTGCA 57.395 33.333 2.68 4.29 37.82 4.08
361 370 9.499369 ACCAGCTAGAGGATCATGTATAATTAT 57.501 33.333 8.49 2.97 37.82 1.28
362 371 8.901472 ACCAGCTAGAGGATCATGTATAATTA 57.099 34.615 8.49 0.00 37.82 1.40
419 429 3.508012 CAGCTCTTATGGTATAGCTCCGT 59.492 47.826 3.20 0.00 43.26 4.69
420 430 3.119316 CCAGCTCTTATGGTATAGCTCCG 60.119 52.174 3.20 0.00 43.26 4.63
432 442 9.860898 CAAAAGTTTTAAATAGCCAGCTCTTAT 57.139 29.630 0.00 0.00 0.00 1.73
517 530 1.824230 TGCCCAACAATTACTCCATGC 59.176 47.619 0.00 0.00 0.00 4.06
523 536 6.777091 TGCTTATGATATGCCCAACAATTACT 59.223 34.615 7.72 0.00 0.00 2.24
524 537 6.980593 TGCTTATGATATGCCCAACAATTAC 58.019 36.000 7.72 0.00 0.00 1.89
578 591 8.502738 TGGAAAGCTATAAGTTTGGAGGATAAT 58.497 33.333 0.00 0.00 0.00 1.28
661 679 4.005650 TCATGACAGGATTTCTCAACAGC 58.994 43.478 0.00 0.00 0.00 4.40
663 681 5.807909 TGATCATGACAGGATTTCTCAACA 58.192 37.500 3.78 0.00 0.00 3.33
664 682 6.748333 TTGATCATGACAGGATTTCTCAAC 57.252 37.500 3.78 0.00 0.00 3.18
793 813 6.670695 AGTTTGGCTTATGGAAGAAAACAT 57.329 33.333 13.95 0.00 40.14 2.71
908 928 2.797156 CAAATAATCCTCTCCGCTCACG 59.203 50.000 0.00 0.00 39.67 4.35
1068 1088 6.556974 ATGAACAAGAATGAGATGAGGAGA 57.443 37.500 0.00 0.00 0.00 3.71
1092 1112 0.260816 TACAGGGAGGTAGCGTGGAT 59.739 55.000 0.00 0.00 0.00 3.41
1208 1228 2.320781 GGGTGAGCTCTATCAGGCTAA 58.679 52.381 16.19 0.00 39.05 3.09
1294 1314 1.919600 GCCTTGTCCCAGAGGAGCAT 61.920 60.000 0.00 0.00 45.21 3.79
1956 2289 7.172875 TGCCCACTGTTTGAATATTTTTCAATG 59.827 33.333 3.59 0.38 38.12 2.82
2503 2840 0.108520 CTAACCGCGACTAAAGGCCA 60.109 55.000 8.23 0.00 0.00 5.36
2600 2937 2.481185 CCTTTAGTCGCGGTTGCTTAAA 59.519 45.455 6.13 2.35 39.65 1.52
2757 3095 0.466189 ATGGTAGGGCGGCAATTCTG 60.466 55.000 12.47 0.00 0.00 3.02
2857 3195 2.014128 GTGTACGGGTCCCAATCATTG 58.986 52.381 9.12 0.00 0.00 2.82
2920 3258 4.415150 ATGGGCAGCACCTCCACG 62.415 66.667 0.00 0.00 39.10 4.94
3479 3817 1.691434 GAGCTTTCCATCCTCGGAGAT 59.309 52.381 6.58 0.00 36.12 2.75
3528 3866 3.003763 GGTCGCTCAAGGACCCCT 61.004 66.667 0.00 0.00 46.65 4.79
3765 5641 4.814294 CGTACCTGCTCGGCCACC 62.814 72.222 2.24 0.00 35.61 4.61
3856 5732 1.891919 GACGTTGCTGGGCTTGACA 60.892 57.895 0.00 0.00 0.00 3.58
3859 5735 1.210931 CATGACGTTGCTGGGCTTG 59.789 57.895 0.00 0.00 0.00 4.01
4108 5984 2.607750 TCCCAGACCCACTCCAGC 60.608 66.667 0.00 0.00 0.00 4.85
4205 6090 2.048127 GAGACCCACGACCAGCAC 60.048 66.667 0.00 0.00 0.00 4.40
4303 6188 2.615493 GGGCATCTTTCGAGGAAGAACA 60.615 50.000 3.77 0.00 38.98 3.18
4458 6346 1.542987 GGAGAAGAGCTGGATGGATGC 60.543 57.143 0.00 0.00 0.00 3.91
4762 6650 9.688091 TGTAAAGGTCCATTAATGTAGCATTAA 57.312 29.630 14.25 14.23 0.00 1.40
4777 6665 3.462579 TGTAAAACCCCTGTAAAGGTCCA 59.537 43.478 0.00 0.00 34.45 4.02
4783 6671 4.539596 AACCCTGTAAAACCCCTGTAAA 57.460 40.909 0.00 0.00 0.00 2.01
4784 6672 4.664536 ACTAACCCTGTAAAACCCCTGTAA 59.335 41.667 0.00 0.00 0.00 2.41
4785 6673 4.241981 ACTAACCCTGTAAAACCCCTGTA 58.758 43.478 0.00 0.00 0.00 2.74
4786 6674 3.058341 ACTAACCCTGTAAAACCCCTGT 58.942 45.455 0.00 0.00 0.00 4.00
4787 6675 3.801307 ACTAACCCTGTAAAACCCCTG 57.199 47.619 0.00 0.00 0.00 4.45
4788 6676 4.819702 AAACTAACCCTGTAAAACCCCT 57.180 40.909 0.00 0.00 0.00 4.79
4789 6677 6.306199 TCTAAAACTAACCCTGTAAAACCCC 58.694 40.000 0.00 0.00 0.00 4.95
4790 6678 9.690913 ATATCTAAAACTAACCCTGTAAAACCC 57.309 33.333 0.00 0.00 0.00 4.11
4816 6715 1.213296 GAACCCAGGCTCCTTCCATA 58.787 55.000 0.00 0.00 0.00 2.74
4833 6732 6.469410 AGACAATAATCCTAAACACACGGAA 58.531 36.000 0.00 0.00 0.00 4.30
4963 6862 2.291043 CCCGGCTCTGGGTGTACTT 61.291 63.158 5.59 0.00 44.76 2.24
5023 6922 3.553096 GCATAACGAGGACCATGGAGTAG 60.553 52.174 21.47 8.05 0.00 2.57
5036 6935 5.868257 TGCTACAAATTGAAGCATAACGAG 58.132 37.500 0.00 0.00 41.15 4.18
5052 6951 7.187824 AGAAACAATCTAGGAGATGCTACAA 57.812 36.000 0.00 0.00 34.65 2.41
5121 7020 0.912486 ACATTAGGCCACTGGGAGAC 59.088 55.000 5.01 0.00 35.59 3.36
5144 7043 0.245539 ACACCCCGTCAACTCATACG 59.754 55.000 0.00 0.00 38.80 3.06
5201 8560 2.028045 CGTAGACAACGTGCATAGCAAG 59.972 50.000 3.45 3.45 46.72 4.01
5215 8574 2.005370 AGGGTTTCCACTCGTAGACA 57.995 50.000 0.00 0.00 34.83 3.41
5288 8647 2.903855 CCGCATCATCCCCTGTGC 60.904 66.667 0.00 0.00 0.00 4.57
5399 8758 1.179152 CCCATCAGCATTGTCTTGCA 58.821 50.000 0.00 0.00 45.23 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.