Multiple sequence alignment - TraesCS4A01G466400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G466400 chr4A 100.000 3146 0 0 1 3146 729235778 729238923 0.000000e+00 5810
1 TraesCS4A01G466400 chr4A 94.723 2975 116 19 211 3146 728586383 728589355 0.000000e+00 4586
2 TraesCS4A01G466400 chr4A 84.558 1483 179 27 1048 2494 729972593 729971125 0.000000e+00 1424
3 TraesCS4A01G466400 chr4A 84.564 1490 167 37 1048 2494 730536042 730537511 0.000000e+00 1419
4 TraesCS4A01G466400 chr4A 84.398 1487 166 36 1048 2494 730456130 730457590 0.000000e+00 1400
5 TraesCS4A01G466400 chr4A 84.161 1490 165 41 1048 2494 730588827 730590288 0.000000e+00 1378
6 TraesCS4A01G466400 chr4A 83.167 1503 169 45 1048 2494 730509859 730511333 0.000000e+00 1297
7 TraesCS4A01G466400 chr4A 79.205 1837 293 52 975 2756 728554261 728552459 0.000000e+00 1194
8 TraesCS4A01G466400 chr4A 77.634 1775 308 52 975 2689 729157300 729159045 0.000000e+00 996
9 TraesCS4A01G466400 chr4A 80.739 1002 152 24 1716 2686 729678587 729679578 0.000000e+00 743
10 TraesCS4A01G466400 chr4A 75.897 1394 265 43 1309 2664 727711423 727712783 0.000000e+00 647
11 TraesCS4A01G466400 chr4A 79.751 642 105 17 975 1596 729677750 729678386 2.880000e-120 442
12 TraesCS4A01G466400 chr4A 83.944 355 43 10 2754 3105 728552367 728552024 8.410000e-86 327
13 TraesCS4A01G466400 chr4A 82.749 371 55 5 1009 1370 743634611 743634981 3.910000e-84 322
14 TraesCS4A01G466400 chr4A 81.633 343 38 9 2756 3096 730894958 730895277 8.650000e-66 261
15 TraesCS4A01G466400 chr4A 89.055 201 19 2 2936 3133 730324830 730325030 2.420000e-61 246
16 TraesCS4A01G466400 chr4A 87.500 144 13 3 2757 2900 729927432 729927570 9.030000e-36 161
17 TraesCS4A01G466400 chr7A 89.033 2243 160 33 71 2283 9493368 9495554 0.000000e+00 2700
18 TraesCS4A01G466400 chr7A 76.936 1795 313 51 899 2639 10170037 10168290 0.000000e+00 928
19 TraesCS4A01G466400 chr7A 87.887 355 34 8 2795 3146 9417354 9417702 2.920000e-110 409
20 TraesCS4A01G466400 chr7D 78.046 1781 321 46 961 2689 8818846 8820608 0.000000e+00 1059
21 TraesCS4A01G466400 chr7D 78.161 1740 307 44 975 2666 109144721 109143007 0.000000e+00 1040
22 TraesCS4A01G466400 chr7D 77.791 1666 293 32 1016 2636 10974205 10972572 0.000000e+00 955
23 TraesCS4A01G466400 chr7D 81.504 1130 154 28 1645 2756 9235077 9236169 0.000000e+00 878
24 TraesCS4A01G466400 chr7D 88.917 397 36 6 2751 3146 9382672 9383061 1.700000e-132 483
25 TraesCS4A01G466400 chr7D 91.768 328 25 1 2365 2692 9382234 9382559 3.700000e-124 455
26 TraesCS4A01G466400 chr7D 84.831 356 39 11 2754 3106 9271366 9271709 8.350000e-91 344
27 TraesCS4A01G466400 chr7D 83.520 358 33 18 2754 3109 9362025 9362358 8.470000e-81 311
28 TraesCS4A01G466400 chr7D 77.202 386 59 12 2757 3142 10098562 10098206 6.880000e-47 198
29 TraesCS4A01G466400 chr4D 79.850 1335 215 25 1374 2689 507351809 507350510 0.000000e+00 926
30 TraesCS4A01G466400 chr5A 85.227 352 42 5 2340 2689 691822371 691822714 1.390000e-93 353
31 TraesCS4A01G466400 chr2B 80.819 464 71 13 229 679 489351570 489352028 6.460000e-92 348


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G466400 chr4A 729235778 729238923 3145 False 5810.0 5810 100.0000 1 3146 1 chr4A.!!$F4 3145
1 TraesCS4A01G466400 chr4A 728586383 728589355 2972 False 4586.0 4586 94.7230 211 3146 1 chr4A.!!$F2 2935
2 TraesCS4A01G466400 chr4A 729971125 729972593 1468 True 1424.0 1424 84.5580 1048 2494 1 chr4A.!!$R1 1446
3 TraesCS4A01G466400 chr4A 730536042 730537511 1469 False 1419.0 1419 84.5640 1048 2494 1 chr4A.!!$F9 1446
4 TraesCS4A01G466400 chr4A 730456130 730457590 1460 False 1400.0 1400 84.3980 1048 2494 1 chr4A.!!$F7 1446
5 TraesCS4A01G466400 chr4A 730588827 730590288 1461 False 1378.0 1378 84.1610 1048 2494 1 chr4A.!!$F10 1446
6 TraesCS4A01G466400 chr4A 730509859 730511333 1474 False 1297.0 1297 83.1670 1048 2494 1 chr4A.!!$F8 1446
7 TraesCS4A01G466400 chr4A 729157300 729159045 1745 False 996.0 996 77.6340 975 2689 1 chr4A.!!$F3 1714
8 TraesCS4A01G466400 chr4A 728552024 728554261 2237 True 760.5 1194 81.5745 975 3105 2 chr4A.!!$R2 2130
9 TraesCS4A01G466400 chr4A 727711423 727712783 1360 False 647.0 647 75.8970 1309 2664 1 chr4A.!!$F1 1355
10 TraesCS4A01G466400 chr4A 729677750 729679578 1828 False 592.5 743 80.2450 975 2686 2 chr4A.!!$F13 1711
11 TraesCS4A01G466400 chr7A 9493368 9495554 2186 False 2700.0 2700 89.0330 71 2283 1 chr7A.!!$F2 2212
12 TraesCS4A01G466400 chr7A 10168290 10170037 1747 True 928.0 928 76.9360 899 2639 1 chr7A.!!$R1 1740
13 TraesCS4A01G466400 chr7D 8818846 8820608 1762 False 1059.0 1059 78.0460 961 2689 1 chr7D.!!$F1 1728
14 TraesCS4A01G466400 chr7D 109143007 109144721 1714 True 1040.0 1040 78.1610 975 2666 1 chr7D.!!$R3 1691
15 TraesCS4A01G466400 chr7D 10972572 10974205 1633 True 955.0 955 77.7910 1016 2636 1 chr7D.!!$R2 1620
16 TraesCS4A01G466400 chr7D 9235077 9236169 1092 False 878.0 878 81.5040 1645 2756 1 chr7D.!!$F2 1111
17 TraesCS4A01G466400 chr7D 9382234 9383061 827 False 469.0 483 90.3425 2365 3146 2 chr7D.!!$F5 781
18 TraesCS4A01G466400 chr4D 507350510 507351809 1299 True 926.0 926 79.8500 1374 2689 1 chr4D.!!$R1 1315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.184451 GGCCCACATCATCTGACCAT 59.816 55.0 0.0 0.0 0.00 3.55 F
139 140 0.537371 CCCGGCACAGGAAAAGAAGT 60.537 55.0 0.0 0.0 0.00 3.01 F
787 812 0.541392 ACTGCTGTGTTGACCACTGA 59.459 50.0 0.0 0.0 44.81 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1322 0.322546 GAGGGTCAAACGGGATTGCT 60.323 55.000 0.0 0.0 0.00 3.91 R
2135 2393 1.600638 AGGTAAACCTACTGCCCGC 59.399 57.895 0.0 0.0 46.48 6.13 R
2243 2506 3.004734 GTGTAAGCACCAGCAAATTGAGT 59.995 43.478 0.0 0.0 45.49 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.284945 AGATGCTAGATTTTGCTAAATTGACA 57.715 30.769 7.55 5.17 34.16 3.58
32 33 8.186821 AGATGCTAGATTTTGCTAAATTGACAC 58.813 33.333 7.55 0.00 34.16 3.67
33 34 7.452880 TGCTAGATTTTGCTAAATTGACACT 57.547 32.000 7.55 2.95 34.16 3.55
34 35 7.530010 TGCTAGATTTTGCTAAATTGACACTC 58.470 34.615 7.55 0.00 34.16 3.51
35 36 7.391554 TGCTAGATTTTGCTAAATTGACACTCT 59.608 33.333 7.55 2.42 34.16 3.24
36 37 7.695618 GCTAGATTTTGCTAAATTGACACTCTG 59.304 37.037 7.55 0.00 34.16 3.35
37 38 7.516198 AGATTTTGCTAAATTGACACTCTGT 57.484 32.000 7.55 0.00 34.16 3.41
38 39 7.588512 AGATTTTGCTAAATTGACACTCTGTC 58.411 34.615 7.55 0.00 39.58 3.51
39 40 5.689383 TTTGCTAAATTGACACTCTGTCC 57.311 39.130 0.00 0.00 46.40 4.02
40 41 3.674997 TGCTAAATTGACACTCTGTCCC 58.325 45.455 0.00 0.00 46.40 4.46
41 42 2.673368 GCTAAATTGACACTCTGTCCCG 59.327 50.000 0.00 0.00 46.40 5.14
42 43 3.616560 GCTAAATTGACACTCTGTCCCGA 60.617 47.826 0.00 0.00 46.40 5.14
43 44 2.751166 AATTGACACTCTGTCCCGAG 57.249 50.000 0.00 0.00 46.40 4.63
44 45 0.898320 ATTGACACTCTGTCCCGAGG 59.102 55.000 0.00 0.00 46.40 4.63
45 46 1.816863 TTGACACTCTGTCCCGAGGC 61.817 60.000 0.00 0.00 46.40 4.70
46 47 1.979693 GACACTCTGTCCCGAGGCT 60.980 63.158 0.00 0.00 41.37 4.58
47 48 2.219325 GACACTCTGTCCCGAGGCTG 62.219 65.000 0.00 0.00 41.37 4.85
48 49 1.979155 CACTCTGTCCCGAGGCTGA 60.979 63.158 0.00 0.00 35.33 4.26
49 50 1.979693 ACTCTGTCCCGAGGCTGAC 60.980 63.158 0.00 0.00 35.33 3.51
50 51 2.680352 TCTGTCCCGAGGCTGACC 60.680 66.667 0.00 0.00 0.00 4.02
60 61 2.124942 GGCTGACCTGGCTGTAGC 60.125 66.667 0.00 0.00 41.14 3.58
94 95 0.184451 GGCCCACATCATCTGACCAT 59.816 55.000 0.00 0.00 0.00 3.55
98 99 2.092807 CCCACATCATCTGACCATCACA 60.093 50.000 0.00 0.00 0.00 3.58
99 100 3.203716 CCACATCATCTGACCATCACAG 58.796 50.000 0.00 0.00 36.80 3.66
100 101 3.118519 CCACATCATCTGACCATCACAGA 60.119 47.826 0.00 0.00 46.17 3.41
113 114 1.877637 TCACAGATCAACCCAACACG 58.122 50.000 0.00 0.00 0.00 4.49
131 132 3.390521 CAGTAGCCCGGCACAGGA 61.391 66.667 13.15 0.00 0.00 3.86
132 133 2.606519 AGTAGCCCGGCACAGGAA 60.607 61.111 13.15 0.00 0.00 3.36
135 136 1.002624 TAGCCCGGCACAGGAAAAG 60.003 57.895 13.15 0.00 0.00 2.27
138 139 1.866853 GCCCGGCACAGGAAAAGAAG 61.867 60.000 3.91 0.00 0.00 2.85
139 140 0.537371 CCCGGCACAGGAAAAGAAGT 60.537 55.000 0.00 0.00 0.00 3.01
141 142 2.076863 CCGGCACAGGAAAAGAAGTAG 58.923 52.381 0.00 0.00 0.00 2.57
142 143 1.464997 CGGCACAGGAAAAGAAGTAGC 59.535 52.381 0.00 0.00 0.00 3.58
152 170 0.901580 AAGAAGTAGCCCCGACGGAA 60.902 55.000 17.49 0.00 0.00 4.30
170 188 2.258591 CGGTCTCGTCACACAGGG 59.741 66.667 0.00 0.00 0.00 4.45
171 189 2.657237 GGTCTCGTCACACAGGGG 59.343 66.667 0.00 0.00 0.00 4.79
177 195 2.194597 GTCACACAGGGGGCACAA 59.805 61.111 0.00 0.00 0.00 3.33
460 484 2.153645 TGTGTCTTGTGGCAGCATAAG 58.846 47.619 0.00 0.00 0.00 1.73
626 650 9.428097 GTCTGATATTTCCAAGCTTTTGAAATT 57.572 29.630 26.59 18.51 0.00 1.82
786 811 0.659427 CACTGCTGTGTTGACCACTG 59.341 55.000 15.05 0.00 44.81 3.66
787 812 0.541392 ACTGCTGTGTTGACCACTGA 59.459 50.000 0.00 0.00 44.81 3.41
797 822 1.248486 TGACCACTGACCTTCGAGAG 58.752 55.000 0.00 0.00 0.00 3.20
863 888 2.835764 AGCCAACGTACTATCTTTCCCA 59.164 45.455 0.00 0.00 0.00 4.37
1802 2008 4.909695 TGGTATGATTGGATCATCTCAGGT 59.090 41.667 6.68 0.00 46.62 4.00
2090 2348 7.517734 GCTTGAGAAAAACAGTACACAACGATA 60.518 37.037 0.00 0.00 0.00 2.92
2135 2393 3.132160 CAGAGTCATTAGCAGATGCAGG 58.868 50.000 7.68 0.00 45.16 4.85
2136 2394 1.872313 GAGTCATTAGCAGATGCAGGC 59.128 52.381 7.68 0.00 45.16 4.85
2243 2506 3.811497 CGGAATCTGCTTGAATCATGCTA 59.189 43.478 19.51 10.00 35.87 3.49
2302 2565 0.529378 CCAGTTCAGAGCAAATGCCC 59.471 55.000 0.94 0.00 43.38 5.36
2351 2630 4.566004 TCGAAGGACATTGTTACTCTTGG 58.434 43.478 0.00 0.00 0.00 3.61
2502 2793 7.065803 GTGCATATTGTCAACCTGTTAGTGTAT 59.934 37.037 0.00 0.00 0.00 2.29
2709 3028 1.429463 ACGTTGGAAGCTTCGATGAC 58.571 50.000 19.91 11.20 0.00 3.06
2756 3077 4.083749 GCGTTTGGTCCTTTTTGTTGTTTT 60.084 37.500 0.00 0.00 0.00 2.43
2844 3259 6.093219 CGCTCTTAGCAGCCATATAATTTGAT 59.907 38.462 0.00 0.00 42.58 2.57
2848 3263 3.192001 AGCAGCCATATAATTTGATGCCG 59.808 43.478 0.00 0.00 32.95 5.69
2926 3341 5.298276 ACAAGGAAGAAAAATCGCTGTGTAA 59.702 36.000 0.00 0.00 0.00 2.41
2960 3375 7.785033 ACTCCAAAGTTCTGTCAAAAATGAAT 58.215 30.769 0.00 0.00 28.74 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.394767 TGTCAATTTAGCAAAATCTAGCATCTA 57.605 29.630 0.00 0.00 34.12 1.98
6 7 8.186821 GTGTCAATTTAGCAAAATCTAGCATCT 58.813 33.333 0.00 0.00 34.12 2.90
7 8 8.186821 AGTGTCAATTTAGCAAAATCTAGCATC 58.813 33.333 0.00 0.00 34.12 3.91
8 9 8.059798 AGTGTCAATTTAGCAAAATCTAGCAT 57.940 30.769 0.00 0.00 34.12 3.79
9 10 7.391554 AGAGTGTCAATTTAGCAAAATCTAGCA 59.608 33.333 0.00 0.00 34.12 3.49
10 11 7.695618 CAGAGTGTCAATTTAGCAAAATCTAGC 59.304 37.037 0.00 0.00 34.12 3.42
11 12 8.725148 ACAGAGTGTCAATTTAGCAAAATCTAG 58.275 33.333 0.00 0.00 34.12 2.43
12 13 8.621532 ACAGAGTGTCAATTTAGCAAAATCTA 57.378 30.769 0.00 0.00 34.12 1.98
13 14 7.516198 ACAGAGTGTCAATTTAGCAAAATCT 57.484 32.000 0.00 0.00 34.12 2.40
14 15 7.787823 GACAGAGTGTCAATTTAGCAAAATC 57.212 36.000 2.12 0.00 46.22 2.17
28 29 1.979693 AGCCTCGGGACAGAGTGTC 60.980 63.158 0.00 0.00 46.23 3.67
29 30 2.118513 AGCCTCGGGACAGAGTGT 59.881 61.111 0.00 0.00 36.56 3.55
30 31 1.979155 TCAGCCTCGGGACAGAGTG 60.979 63.158 0.00 0.00 36.56 3.51
31 32 1.979693 GTCAGCCTCGGGACAGAGT 60.980 63.158 0.00 0.00 36.56 3.24
32 33 2.716017 GGTCAGCCTCGGGACAGAG 61.716 68.421 0.00 0.00 35.74 3.35
33 34 2.680352 GGTCAGCCTCGGGACAGA 60.680 66.667 0.00 0.00 35.74 3.41
34 35 2.681778 AGGTCAGCCTCGGGACAG 60.682 66.667 0.00 0.00 42.67 3.51
35 36 2.997315 CAGGTCAGCCTCGGGACA 60.997 66.667 0.00 0.00 44.97 4.02
36 37 3.775654 CCAGGTCAGCCTCGGGAC 61.776 72.222 0.00 0.00 44.97 4.46
39 40 4.463879 CAGCCAGGTCAGCCTCGG 62.464 72.222 0.00 0.00 44.97 4.63
40 41 2.290122 CTACAGCCAGGTCAGCCTCG 62.290 65.000 0.00 0.00 44.97 4.63
41 42 1.519719 CTACAGCCAGGTCAGCCTC 59.480 63.158 0.00 0.00 44.97 4.70
43 44 2.124942 GCTACAGCCAGGTCAGCC 60.125 66.667 0.00 0.00 34.31 4.85
55 56 4.715523 GCCGTTGGCTGGGCTACA 62.716 66.667 0.00 0.00 46.69 2.74
75 76 0.184451 ATGGTCAGATGATGTGGGCC 59.816 55.000 0.00 0.00 0.00 5.80
94 95 1.877637 CGTGTTGGGTTGATCTGTGA 58.122 50.000 0.00 0.00 0.00 3.58
98 99 0.108585 ACTGCGTGTTGGGTTGATCT 59.891 50.000 0.00 0.00 0.00 2.75
99 100 1.732259 CTACTGCGTGTTGGGTTGATC 59.268 52.381 0.00 0.00 0.00 2.92
100 101 1.808411 CTACTGCGTGTTGGGTTGAT 58.192 50.000 0.00 0.00 0.00 2.57
101 102 0.882927 GCTACTGCGTGTTGGGTTGA 60.883 55.000 0.00 0.00 0.00 3.18
102 103 1.574428 GCTACTGCGTGTTGGGTTG 59.426 57.895 0.00 0.00 0.00 3.77
103 104 1.599797 GGCTACTGCGTGTTGGGTT 60.600 57.895 0.00 0.00 40.82 4.11
128 129 1.278413 GTCGGGGCTACTTCTTTTCCT 59.722 52.381 0.00 0.00 0.00 3.36
129 130 1.735386 GTCGGGGCTACTTCTTTTCC 58.265 55.000 0.00 0.00 0.00 3.13
130 131 1.356938 CGTCGGGGCTACTTCTTTTC 58.643 55.000 0.00 0.00 0.00 2.29
131 132 0.036671 CCGTCGGGGCTACTTCTTTT 60.037 55.000 2.34 0.00 0.00 2.27
132 133 0.901580 TCCGTCGGGGCTACTTCTTT 60.902 55.000 12.29 0.00 34.94 2.52
135 136 1.153686 GTTCCGTCGGGGCTACTTC 60.154 63.158 12.29 0.00 34.94 3.01
138 139 4.503314 CCGTTCCGTCGGGGCTAC 62.503 72.222 12.29 4.24 45.88 3.58
155 173 2.657237 CCCCCTGTGTGACGAGAC 59.343 66.667 0.00 0.00 0.00 3.36
156 174 3.311110 GCCCCCTGTGTGACGAGA 61.311 66.667 0.00 0.00 0.00 4.04
157 175 3.625897 TGCCCCCTGTGTGACGAG 61.626 66.667 0.00 0.00 0.00 4.18
158 176 3.936203 GTGCCCCCTGTGTGACGA 61.936 66.667 0.00 0.00 0.00 4.20
159 177 3.765894 TTGTGCCCCCTGTGTGACG 62.766 63.158 0.00 0.00 0.00 4.35
160 178 2.193536 GTTGTGCCCCCTGTGTGAC 61.194 63.158 0.00 0.00 0.00 3.67
161 179 2.194597 GTTGTGCCCCCTGTGTGA 59.805 61.111 0.00 0.00 0.00 3.58
162 180 2.123939 TGTTGTGCCCCCTGTGTG 60.124 61.111 0.00 0.00 0.00 3.82
163 181 2.195683 CTGTTGTGCCCCCTGTGT 59.804 61.111 0.00 0.00 0.00 3.72
164 182 3.297620 GCTGTTGTGCCCCCTGTG 61.298 66.667 0.00 0.00 0.00 3.66
165 183 4.603535 GGCTGTTGTGCCCCCTGT 62.604 66.667 0.00 0.00 46.82 4.00
246 264 2.504244 GACTCGCCGTCTTCGTGG 60.504 66.667 0.00 0.00 39.61 4.94
305 323 0.741221 GCTTGCCGCTGCTAACTACT 60.741 55.000 0.70 0.00 38.71 2.57
460 484 6.787085 ACAGCAAGATCTTAAGTTGTGTAC 57.213 37.500 7.86 0.00 0.00 2.90
881 906 1.334384 AAACAAACTGGGTGGTGGCC 61.334 55.000 0.00 0.00 0.00 5.36
892 917 7.288810 TGATCTGGCTAATGAAAAACAAACT 57.711 32.000 0.00 0.00 0.00 2.66
1057 1104 2.265739 GTCATCGGTGAGCAGGCA 59.734 61.111 0.00 0.00 34.36 4.75
1266 1322 0.322546 GAGGGTCAAACGGGATTGCT 60.323 55.000 0.00 0.00 0.00 3.91
1596 1709 2.301346 GCTGTCCCACAATTCCTATGG 58.699 52.381 0.00 0.00 0.00 2.74
1943 2173 3.495193 CCAACAATCATGTGCTTCTTCG 58.505 45.455 0.00 0.00 40.46 3.79
2090 2348 5.069781 GTGAACAGAGGAACATAGGCTAGAT 59.930 44.000 0.00 0.00 0.00 1.98
2135 2393 1.600638 AGGTAAACCTACTGCCCGC 59.399 57.895 0.00 0.00 46.48 6.13
2243 2506 3.004734 GTGTAAGCACCAGCAAATTGAGT 59.995 43.478 0.00 0.00 45.49 3.41
2302 2565 7.956420 TGACATTATGCTTATAGGTTTACCG 57.044 36.000 0.00 0.00 42.08 4.02
2351 2630 3.578688 CCAGTGCAAGGCAAATAAGAAC 58.421 45.455 0.00 0.00 41.47 3.01
2502 2793 8.974060 ACCAGTCTGATTGAAACTTTTAGTAA 57.026 30.769 0.00 0.00 0.00 2.24
2787 3202 4.705337 AGCGTCTAAACCAACAAACAAA 57.295 36.364 0.00 0.00 0.00 2.83
2792 3207 4.952460 ACTCTAAGCGTCTAAACCAACAA 58.048 39.130 0.00 0.00 0.00 2.83
2844 3259 0.953471 GACACTGCATTACCACGGCA 60.953 55.000 0.00 0.00 35.96 5.69
2848 3263 2.094258 CACATCGACACTGCATTACCAC 59.906 50.000 0.00 0.00 0.00 4.16
2926 3341 5.440610 ACAGAACTTTGGAGTCTGACAATT 58.559 37.500 10.88 0.00 35.96 2.32
3031 3446 9.260002 ACATTGAATTGTTTCGCTTTTCTAAAT 57.740 25.926 0.00 0.00 34.39 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.