Multiple sequence alignment - TraesCS4A01G466300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G466300 chr4A 100.000 3864 0 0 1 3864 729226656 729222793 0.000000e+00 7136.0
1 TraesCS4A01G466300 chr4A 92.692 1341 81 11 1332 2667 698002464 698003792 0.000000e+00 1917.0
2 TraesCS4A01G466300 chr4A 80.328 183 31 2 935 1112 729234171 729234353 2.420000e-27 134.0
3 TraesCS4A01G466300 chr4A 88.235 51 4 2 3081 3129 294317772 294317722 4.170000e-05 60.2
4 TraesCS4A01G466300 chr1B 93.013 1331 65 12 1357 2669 268798917 268797597 0.000000e+00 1917.0
5 TraesCS4A01G466300 chr1B 89.407 1350 93 23 1339 2666 43503464 43502143 0.000000e+00 1655.0
6 TraesCS4A01G466300 chr1B 92.356 1125 69 10 1332 2449 595605386 595606500 0.000000e+00 1585.0
7 TraesCS4A01G466300 chr1B 95.707 792 33 1 1 792 312243934 312244724 0.000000e+00 1273.0
8 TraesCS4A01G466300 chr1B 95.088 794 37 2 1 794 76734974 76735765 0.000000e+00 1249.0
9 TraesCS4A01G466300 chr7D 92.697 1342 77 11 1332 2666 255781097 255782424 0.000000e+00 1916.0
10 TraesCS4A01G466300 chr7D 89.788 519 34 12 795 1297 8828949 8828434 0.000000e+00 647.0
11 TraesCS4A01G466300 chr7D 87.711 415 49 2 2671 3083 8828447 8828033 2.090000e-132 483.0
12 TraesCS4A01G466300 chr7D 94.000 50 3 0 3815 3864 8828039 8827990 4.140000e-10 76.8
13 TraesCS4A01G466300 chr5D 92.612 1340 66 16 1346 2666 205118167 205116842 0.000000e+00 1895.0
14 TraesCS4A01G466300 chr5D 89.985 1338 94 17 1336 2666 389028848 389030152 0.000000e+00 1692.0
15 TraesCS4A01G466300 chr5D 92.727 55 2 2 3745 3798 413596036 413595983 1.150000e-10 78.7
16 TraesCS4A01G466300 chr5B 91.642 1352 74 13 1332 2666 148989154 148987825 0.000000e+00 1834.0
17 TraesCS4A01G466300 chr7B 91.648 1329 90 15 1348 2669 64169033 64167719 0.000000e+00 1820.0
18 TraesCS4A01G466300 chr7B 90.713 1346 107 10 1327 2665 74298108 74299442 0.000000e+00 1777.0
19 TraesCS4A01G466300 chr7B 89.805 1334 101 13 1338 2666 450282859 450284162 0.000000e+00 1677.0
20 TraesCS4A01G466300 chr7B 95.088 794 37 2 1 794 459116009 459116800 0.000000e+00 1249.0
21 TraesCS4A01G466300 chr7B 83.740 492 46 18 3093 3582 339312331 339311872 5.930000e-118 435.0
22 TraesCS4A01G466300 chr4D 91.275 1341 96 11 1336 2666 386467677 386469006 0.000000e+00 1808.0
23 TraesCS4A01G466300 chrUn 91.388 1347 74 11 1340 2666 31726494 31727818 0.000000e+00 1807.0
24 TraesCS4A01G466300 chrUn 91.045 1340 82 17 1346 2666 45206500 45205180 0.000000e+00 1775.0
25 TraesCS4A01G466300 chrUn 95.918 49 1 1 3750 3798 284720876 284720829 1.150000e-10 78.7
26 TraesCS4A01G466300 chr6A 89.784 1341 93 17 1346 2665 19158595 19157278 0.000000e+00 1677.0
27 TraesCS4A01G466300 chr6A 95.220 795 34 4 1 794 106682020 106681229 0.000000e+00 1254.0
28 TraesCS4A01G466300 chr6A 79.581 764 80 34 3085 3814 569408967 569408246 9.710000e-131 477.0
29 TraesCS4A01G466300 chr6A 81.720 93 13 3 3724 3814 506046616 506046526 1.490000e-09 75.0
30 TraesCS4A01G466300 chr6D 92.393 1078 64 12 1593 2666 397650713 397649650 0.000000e+00 1520.0
31 TraesCS4A01G466300 chr6D 89.583 48 3 2 3085 3130 455627782 455627829 4.170000e-05 60.2
32 TraesCS4A01G466300 chr6B 95.466 794 34 2 1 794 78310052 78309261 0.000000e+00 1266.0
33 TraesCS4A01G466300 chr6B 95.214 794 36 2 1 794 78265594 78264803 0.000000e+00 1254.0
34 TraesCS4A01G466300 chr6B 95.088 794 37 2 1 794 219563356 219564147 0.000000e+00 1249.0
35 TraesCS4A01G466300 chr6B 82.292 96 14 2 3721 3814 642948632 642948726 3.200000e-11 80.5
36 TraesCS4A01G466300 chr4B 95.346 795 35 2 1 795 622315335 622314543 0.000000e+00 1262.0
37 TraesCS4A01G466300 chr3D 95.088 794 35 4 1 794 596701887 596702676 0.000000e+00 1247.0
38 TraesCS4A01G466300 chr3D 92.308 52 2 2 3081 3130 364956716 364956767 5.350000e-09 73.1
39 TraesCS4A01G466300 chr2A 80.934 771 82 32 3085 3814 144853831 144854577 2.030000e-152 549.0
40 TraesCS4A01G466300 chr2A 79.918 244 32 11 3577 3816 714797186 714797416 3.090000e-36 163.0
41 TraesCS4A01G466300 chr2A 90.000 110 6 3 3472 3581 714797050 714797154 1.870000e-28 137.0
42 TraesCS4A01G466300 chr1A 84.496 516 46 18 3083 3582 35160837 35161334 2.700000e-131 479.0
43 TraesCS4A01G466300 chr1A 82.869 251 28 7 3576 3814 35161365 35161612 1.090000e-50 211.0
44 TraesCS4A01G466300 chr1A 100.000 37 0 0 3777 3813 119721037 119721001 6.930000e-08 69.4
45 TraesCS4A01G466300 chr1A 89.362 47 3 2 3084 3128 2654040 2654086 1.500000e-04 58.4
46 TraesCS4A01G466300 chr1A 100.000 28 0 0 3085 3112 580090506 580090533 7.000000e-03 52.8
47 TraesCS4A01G466300 chr7A 95.122 287 7 5 3297 3581 665681202 665680921 2.740000e-121 446.0
48 TraesCS4A01G466300 chr7A 91.770 243 15 4 3576 3815 665680890 665680650 2.220000e-87 333.0
49 TraesCS4A01G466300 chr7A 78.661 239 32 11 3575 3811 45108562 45108783 1.450000e-29 141.0
50 TraesCS4A01G466300 chr7A 91.667 96 6 2 3082 3175 665681294 665681199 8.710000e-27 132.0
51 TraesCS4A01G466300 chr7A 83.505 97 12 3 3721 3815 15130669 15130763 1.910000e-13 87.9
52 TraesCS4A01G466300 chr7A 91.489 47 2 2 3084 3128 715247278 715247324 3.220000e-06 63.9
53 TraesCS4A01G466300 chr1D 82.398 517 57 22 3082 3581 490102432 490102931 1.660000e-113 420.0
54 TraesCS4A01G466300 chr1D 96.154 52 2 0 3767 3818 454897479 454897428 6.880000e-13 86.1
55 TraesCS4A01G466300 chr3A 91.304 92 7 1 3724 3814 737309781 737309872 1.460000e-24 124.0
56 TraesCS4A01G466300 chr3A 91.892 74 5 1 3336 3409 737303189 737303261 6.830000e-18 102.0
57 TraesCS4A01G466300 chr2D 91.837 49 2 2 3084 3130 229819918 229819870 2.490000e-07 67.6
58 TraesCS4A01G466300 chr2D 89.796 49 3 2 3084 3130 295572645 295572597 1.160000e-05 62.1
59 TraesCS4A01G466300 chr2D 94.872 39 1 1 3085 3122 495092645 495092683 4.170000e-05 60.2
60 TraesCS4A01G466300 chr5A 91.489 47 2 2 3084 3128 436608117 436608071 3.220000e-06 63.9
61 TraesCS4A01G466300 chr5A 89.583 48 3 2 3084 3129 551467587 551467540 4.170000e-05 60.2
62 TraesCS4A01G466300 chr5A 87.755 49 4 2 3084 3130 536384014 536383966 5.390000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G466300 chr4A 729222793 729226656 3863 True 7136.000000 7136 100.000000 1 3864 1 chr4A.!!$R2 3863
1 TraesCS4A01G466300 chr4A 698002464 698003792 1328 False 1917.000000 1917 92.692000 1332 2667 1 chr4A.!!$F1 1335
2 TraesCS4A01G466300 chr1B 268797597 268798917 1320 True 1917.000000 1917 93.013000 1357 2669 1 chr1B.!!$R2 1312
3 TraesCS4A01G466300 chr1B 43502143 43503464 1321 True 1655.000000 1655 89.407000 1339 2666 1 chr1B.!!$R1 1327
4 TraesCS4A01G466300 chr1B 595605386 595606500 1114 False 1585.000000 1585 92.356000 1332 2449 1 chr1B.!!$F3 1117
5 TraesCS4A01G466300 chr1B 312243934 312244724 790 False 1273.000000 1273 95.707000 1 792 1 chr1B.!!$F2 791
6 TraesCS4A01G466300 chr1B 76734974 76735765 791 False 1249.000000 1249 95.088000 1 794 1 chr1B.!!$F1 793
7 TraesCS4A01G466300 chr7D 255781097 255782424 1327 False 1916.000000 1916 92.697000 1332 2666 1 chr7D.!!$F1 1334
8 TraesCS4A01G466300 chr7D 8827990 8828949 959 True 402.266667 647 90.499667 795 3864 3 chr7D.!!$R1 3069
9 TraesCS4A01G466300 chr5D 205116842 205118167 1325 True 1895.000000 1895 92.612000 1346 2666 1 chr5D.!!$R1 1320
10 TraesCS4A01G466300 chr5D 389028848 389030152 1304 False 1692.000000 1692 89.985000 1336 2666 1 chr5D.!!$F1 1330
11 TraesCS4A01G466300 chr5B 148987825 148989154 1329 True 1834.000000 1834 91.642000 1332 2666 1 chr5B.!!$R1 1334
12 TraesCS4A01G466300 chr7B 64167719 64169033 1314 True 1820.000000 1820 91.648000 1348 2669 1 chr7B.!!$R1 1321
13 TraesCS4A01G466300 chr7B 74298108 74299442 1334 False 1777.000000 1777 90.713000 1327 2665 1 chr7B.!!$F1 1338
14 TraesCS4A01G466300 chr7B 450282859 450284162 1303 False 1677.000000 1677 89.805000 1338 2666 1 chr7B.!!$F2 1328
15 TraesCS4A01G466300 chr7B 459116009 459116800 791 False 1249.000000 1249 95.088000 1 794 1 chr7B.!!$F3 793
16 TraesCS4A01G466300 chr4D 386467677 386469006 1329 False 1808.000000 1808 91.275000 1336 2666 1 chr4D.!!$F1 1330
17 TraesCS4A01G466300 chrUn 31726494 31727818 1324 False 1807.000000 1807 91.388000 1340 2666 1 chrUn.!!$F1 1326
18 TraesCS4A01G466300 chrUn 45205180 45206500 1320 True 1775.000000 1775 91.045000 1346 2666 1 chrUn.!!$R1 1320
19 TraesCS4A01G466300 chr6A 19157278 19158595 1317 True 1677.000000 1677 89.784000 1346 2665 1 chr6A.!!$R1 1319
20 TraesCS4A01G466300 chr6A 106681229 106682020 791 True 1254.000000 1254 95.220000 1 794 1 chr6A.!!$R2 793
21 TraesCS4A01G466300 chr6A 569408246 569408967 721 True 477.000000 477 79.581000 3085 3814 1 chr6A.!!$R4 729
22 TraesCS4A01G466300 chr6D 397649650 397650713 1063 True 1520.000000 1520 92.393000 1593 2666 1 chr6D.!!$R1 1073
23 TraesCS4A01G466300 chr6B 78309261 78310052 791 True 1266.000000 1266 95.466000 1 794 1 chr6B.!!$R2 793
24 TraesCS4A01G466300 chr6B 78264803 78265594 791 True 1254.000000 1254 95.214000 1 794 1 chr6B.!!$R1 793
25 TraesCS4A01G466300 chr6B 219563356 219564147 791 False 1249.000000 1249 95.088000 1 794 1 chr6B.!!$F1 793
26 TraesCS4A01G466300 chr4B 622314543 622315335 792 True 1262.000000 1262 95.346000 1 795 1 chr4B.!!$R1 794
27 TraesCS4A01G466300 chr3D 596701887 596702676 789 False 1247.000000 1247 95.088000 1 794 1 chr3D.!!$F2 793
28 TraesCS4A01G466300 chr2A 144853831 144854577 746 False 549.000000 549 80.934000 3085 3814 1 chr2A.!!$F1 729
29 TraesCS4A01G466300 chr1A 35160837 35161612 775 False 345.000000 479 83.682500 3083 3814 2 chr1A.!!$F3 731
30 TraesCS4A01G466300 chr7A 665680650 665681294 644 True 303.666667 446 92.853000 3082 3815 3 chr7A.!!$R1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 691 0.105039 GTAGTCATTGCCTCGGGGAG 59.895 60.0 4.8 0.0 33.58 4.30 F
1310 1329 0.033699 GGGAGGATTGGCTCAAGCTT 60.034 55.0 0.0 0.0 41.70 3.74 F
2358 2455 0.904865 TCTGAAGATGGAGCGGTGGT 60.905 55.0 0.0 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2455 2554 0.035317 AACAGACATCGCAGCCAAGA 59.965 50.0 0.0 0.0 0.0 3.02 R
2826 2928 0.387367 CGAGTGTGGAAGTGGAGACG 60.387 60.0 0.0 0.0 0.0 4.18 R
3815 3992 0.179081 GACCATCGTGAAGCCTACCC 60.179 60.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.338105 CGGAGTTGAGTGGATGCTTCA 60.338 52.381 1.64 0.00 0.00 3.02
97 99 5.163088 GGGGCTAAGGAGGAATCTAATTTCA 60.163 44.000 0.00 0.00 0.00 2.69
276 278 0.542232 ACTGGAGTTGCGGGAGTAGT 60.542 55.000 0.00 0.00 0.00 2.73
337 339 2.032426 GTCGAGTAGCTCTCAGTAAGCC 59.968 54.545 11.93 0.00 42.88 4.35
350 352 3.258372 TCAGTAAGCCACGAAGAAGACAT 59.742 43.478 0.00 0.00 0.00 3.06
413 415 5.512942 TTCAAGGTGGTGGAGAATATTCA 57.487 39.130 17.56 0.00 0.00 2.57
457 459 9.866936 GTGTTTGTGTCGAATATTTTGTACTAA 57.133 29.630 0.00 0.00 0.00 2.24
472 474 5.149973 TGTACTAATTGGGTTACGCTTGA 57.850 39.130 0.36 0.00 0.00 3.02
564 566 2.523740 TATGAGGAGGCACCCCACGA 62.524 60.000 0.00 0.00 40.05 4.35
650 653 2.973600 GTGGCCGGTGTTGCGTTA 60.974 61.111 1.90 0.00 0.00 3.18
651 654 2.032834 TGGCCGGTGTTGCGTTAT 59.967 55.556 1.90 0.00 0.00 1.89
652 655 2.036006 TGGCCGGTGTTGCGTTATC 61.036 57.895 1.90 0.00 0.00 1.75
653 656 1.743995 GGCCGGTGTTGCGTTATCT 60.744 57.895 1.90 0.00 0.00 1.98
654 657 1.702491 GGCCGGTGTTGCGTTATCTC 61.702 60.000 1.90 0.00 0.00 2.75
655 658 1.995991 CCGGTGTTGCGTTATCTCG 59.004 57.895 0.00 0.00 0.00 4.04
656 659 1.418342 CCGGTGTTGCGTTATCTCGG 61.418 60.000 0.00 0.00 0.00 4.63
657 660 1.418342 CGGTGTTGCGTTATCTCGGG 61.418 60.000 0.00 0.00 0.00 5.14
658 661 1.087771 GGTGTTGCGTTATCTCGGGG 61.088 60.000 0.00 0.00 0.00 5.73
659 662 0.108520 GTGTTGCGTTATCTCGGGGA 60.109 55.000 0.00 0.00 0.00 4.81
660 663 0.174845 TGTTGCGTTATCTCGGGGAG 59.825 55.000 0.00 0.00 0.00 4.30
661 664 0.529992 GTTGCGTTATCTCGGGGAGG 60.530 60.000 0.00 0.00 0.00 4.30
662 665 0.685131 TTGCGTTATCTCGGGGAGGA 60.685 55.000 0.00 0.00 0.00 3.71
663 666 1.107538 TGCGTTATCTCGGGGAGGAG 61.108 60.000 0.00 0.00 35.32 3.69
664 667 1.660917 CGTTATCTCGGGGAGGAGC 59.339 63.158 0.00 0.00 33.98 4.70
665 668 1.660917 GTTATCTCGGGGAGGAGCG 59.339 63.158 0.00 0.00 33.98 5.03
666 669 2.201022 TTATCTCGGGGAGGAGCGC 61.201 63.158 0.00 0.00 33.98 5.92
674 677 3.902086 GGAGGAGCGCCGGTAGTC 61.902 72.222 2.29 0.00 39.96 2.59
675 678 3.138798 GAGGAGCGCCGGTAGTCA 61.139 66.667 2.29 0.00 39.96 3.41
676 679 2.442272 AGGAGCGCCGGTAGTCAT 60.442 61.111 2.29 0.00 39.96 3.06
677 680 2.017559 GAGGAGCGCCGGTAGTCATT 62.018 60.000 2.29 0.00 39.96 2.57
678 681 1.883084 GGAGCGCCGGTAGTCATTG 60.883 63.158 2.29 0.00 0.00 2.82
679 682 2.511600 AGCGCCGGTAGTCATTGC 60.512 61.111 2.29 0.00 0.00 3.56
680 683 3.573491 GCGCCGGTAGTCATTGCC 61.573 66.667 1.90 0.00 0.00 4.52
681 684 2.186903 CGCCGGTAGTCATTGCCT 59.813 61.111 1.90 0.00 0.00 4.75
682 685 1.883084 CGCCGGTAGTCATTGCCTC 60.883 63.158 1.90 0.00 0.00 4.70
683 686 1.883084 GCCGGTAGTCATTGCCTCG 60.883 63.158 1.90 0.00 0.00 4.63
684 687 1.227263 CCGGTAGTCATTGCCTCGG 60.227 63.158 0.00 0.00 0.00 4.63
685 688 1.227263 CGGTAGTCATTGCCTCGGG 60.227 63.158 0.00 0.00 0.00 5.14
686 689 1.146263 GGTAGTCATTGCCTCGGGG 59.854 63.158 0.00 0.00 0.00 5.73
687 690 1.335132 GGTAGTCATTGCCTCGGGGA 61.335 60.000 4.80 0.00 33.58 4.81
688 691 0.105039 GTAGTCATTGCCTCGGGGAG 59.895 60.000 4.80 0.00 33.58 4.30
689 692 0.325296 TAGTCATTGCCTCGGGGAGT 60.325 55.000 4.80 0.00 33.58 3.85
690 693 0.325296 AGTCATTGCCTCGGGGAGTA 60.325 55.000 4.80 0.00 33.58 2.59
691 694 0.105039 GTCATTGCCTCGGGGAGTAG 59.895 60.000 4.80 0.00 33.58 2.57
692 695 1.048724 TCATTGCCTCGGGGAGTAGG 61.049 60.000 4.80 0.00 35.86 3.18
696 699 2.907917 CCTCGGGGAGTAGGCGAG 60.908 72.222 0.00 0.00 33.58 5.03
697 700 2.124236 CTCGGGGAGTAGGCGAGT 60.124 66.667 0.00 0.00 0.00 4.18
698 701 1.753463 CTCGGGGAGTAGGCGAGTT 60.753 63.158 0.00 0.00 0.00 3.01
699 702 1.304713 TCGGGGAGTAGGCGAGTTT 60.305 57.895 0.00 0.00 0.00 2.66
700 703 1.153628 CGGGGAGTAGGCGAGTTTG 60.154 63.158 0.00 0.00 0.00 2.93
701 704 1.449778 GGGGAGTAGGCGAGTTTGC 60.450 63.158 0.00 0.00 0.00 3.68
708 711 2.668550 GGCGAGTTTGCCGAACCT 60.669 61.111 0.00 0.00 46.75 3.50
709 712 2.677979 GGCGAGTTTGCCGAACCTC 61.678 63.158 0.00 0.00 46.75 3.85
710 713 3.011760 GCGAGTTTGCCGAACCTCG 62.012 63.158 10.45 10.45 39.13 4.63
711 714 1.663702 CGAGTTTGCCGAACCTCGT 60.664 57.895 0.00 0.00 38.40 4.18
712 715 1.219522 CGAGTTTGCCGAACCTCGTT 61.220 55.000 0.00 0.00 38.40 3.85
713 716 1.787012 GAGTTTGCCGAACCTCGTTA 58.213 50.000 0.00 0.00 38.40 3.18
714 717 2.137523 GAGTTTGCCGAACCTCGTTAA 58.862 47.619 0.00 0.00 38.40 2.01
715 718 1.869132 AGTTTGCCGAACCTCGTTAAC 59.131 47.619 0.00 0.00 38.40 2.01
716 719 1.598601 GTTTGCCGAACCTCGTTAACA 59.401 47.619 6.39 0.00 38.40 2.41
717 720 1.950828 TTGCCGAACCTCGTTAACAA 58.049 45.000 6.39 0.00 38.40 2.83
718 721 1.950828 TGCCGAACCTCGTTAACAAA 58.049 45.000 6.39 0.00 38.40 2.83
719 722 2.496111 TGCCGAACCTCGTTAACAAAT 58.504 42.857 6.39 0.00 38.40 2.32
720 723 2.481185 TGCCGAACCTCGTTAACAAATC 59.519 45.455 6.39 0.00 38.40 2.17
721 724 2.740447 GCCGAACCTCGTTAACAAATCT 59.260 45.455 6.39 0.00 38.40 2.40
722 725 3.181523 GCCGAACCTCGTTAACAAATCTC 60.182 47.826 6.39 0.00 38.40 2.75
723 726 3.060363 CCGAACCTCGTTAACAAATCTCG 59.940 47.826 6.39 7.74 38.40 4.04
724 727 3.060363 CGAACCTCGTTAACAAATCTCGG 59.940 47.826 6.39 0.00 34.72 4.63
725 728 3.672767 ACCTCGTTAACAAATCTCGGT 57.327 42.857 6.39 0.00 0.00 4.69
726 729 3.323243 ACCTCGTTAACAAATCTCGGTG 58.677 45.455 6.39 0.00 0.00 4.94
727 730 3.243975 ACCTCGTTAACAAATCTCGGTGT 60.244 43.478 6.39 0.00 0.00 4.16
728 731 3.367025 CCTCGTTAACAAATCTCGGTGTC 59.633 47.826 6.39 0.00 0.00 3.67
729 732 2.981805 TCGTTAACAAATCTCGGTGTCG 59.018 45.455 6.39 0.00 37.82 4.35
730 733 2.727798 CGTTAACAAATCTCGGTGTCGT 59.272 45.455 6.39 0.00 37.69 4.34
731 734 3.181546 CGTTAACAAATCTCGGTGTCGTC 60.182 47.826 6.39 0.00 37.69 4.20
732 735 2.519377 AACAAATCTCGGTGTCGTCA 57.481 45.000 0.00 0.00 37.69 4.35
733 736 2.743636 ACAAATCTCGGTGTCGTCAT 57.256 45.000 0.00 0.00 37.69 3.06
734 737 3.040147 ACAAATCTCGGTGTCGTCATT 57.960 42.857 0.00 0.00 37.69 2.57
735 738 2.736721 ACAAATCTCGGTGTCGTCATTG 59.263 45.455 0.00 0.00 37.69 2.82
736 739 2.736721 CAAATCTCGGTGTCGTCATTGT 59.263 45.455 0.00 0.00 37.69 2.71
737 740 1.996292 ATCTCGGTGTCGTCATTGTG 58.004 50.000 0.00 0.00 37.69 3.33
738 741 0.666274 TCTCGGTGTCGTCATTGTGC 60.666 55.000 0.00 0.00 37.69 4.57
739 742 0.667487 CTCGGTGTCGTCATTGTGCT 60.667 55.000 0.00 0.00 37.69 4.40
740 743 0.943835 TCGGTGTCGTCATTGTGCTG 60.944 55.000 0.00 0.00 37.69 4.41
741 744 1.221466 CGGTGTCGTCATTGTGCTGT 61.221 55.000 0.00 0.00 0.00 4.40
742 745 0.235665 GGTGTCGTCATTGTGCTGTG 59.764 55.000 0.00 0.00 0.00 3.66
743 746 1.217001 GTGTCGTCATTGTGCTGTGA 58.783 50.000 0.00 0.00 0.00 3.58
744 747 1.800586 GTGTCGTCATTGTGCTGTGAT 59.199 47.619 0.00 0.00 0.00 3.06
745 748 2.224079 GTGTCGTCATTGTGCTGTGATT 59.776 45.455 0.00 0.00 0.00 2.57
746 749 2.223845 TGTCGTCATTGTGCTGTGATTG 59.776 45.455 0.00 0.00 0.00 2.67
747 750 1.197492 TCGTCATTGTGCTGTGATTGC 59.803 47.619 0.00 0.00 0.00 3.56
748 751 1.198408 CGTCATTGTGCTGTGATTGCT 59.802 47.619 0.00 0.00 0.00 3.91
749 752 2.351060 CGTCATTGTGCTGTGATTGCTT 60.351 45.455 0.00 0.00 0.00 3.91
750 753 2.984471 GTCATTGTGCTGTGATTGCTTG 59.016 45.455 0.00 0.00 0.00 4.01
751 754 2.624364 TCATTGTGCTGTGATTGCTTGT 59.376 40.909 0.00 0.00 0.00 3.16
752 755 3.068448 TCATTGTGCTGTGATTGCTTGTT 59.932 39.130 0.00 0.00 0.00 2.83
753 756 3.523606 TTGTGCTGTGATTGCTTGTTT 57.476 38.095 0.00 0.00 0.00 2.83
754 757 3.082698 TGTGCTGTGATTGCTTGTTTC 57.917 42.857 0.00 0.00 0.00 2.78
755 758 2.689471 TGTGCTGTGATTGCTTGTTTCT 59.311 40.909 0.00 0.00 0.00 2.52
756 759 3.243168 TGTGCTGTGATTGCTTGTTTCTC 60.243 43.478 0.00 0.00 0.00 2.87
757 760 2.031769 TGCTGTGATTGCTTGTTTCTCG 60.032 45.455 0.00 0.00 0.00 4.04
758 761 2.666619 GCTGTGATTGCTTGTTTCTCGG 60.667 50.000 0.00 0.00 0.00 4.63
759 762 2.807967 CTGTGATTGCTTGTTTCTCGGA 59.192 45.455 0.00 0.00 0.00 4.55
760 763 3.411446 TGTGATTGCTTGTTTCTCGGAT 58.589 40.909 0.00 0.00 0.00 4.18
761 764 3.189080 TGTGATTGCTTGTTTCTCGGATG 59.811 43.478 0.00 0.00 0.00 3.51
762 765 2.749076 TGATTGCTTGTTTCTCGGATGG 59.251 45.455 0.00 0.00 0.00 3.51
763 766 2.559698 TTGCTTGTTTCTCGGATGGA 57.440 45.000 0.00 0.00 0.00 3.41
764 767 2.787473 TGCTTGTTTCTCGGATGGAT 57.213 45.000 0.00 0.00 0.00 3.41
765 768 2.632377 TGCTTGTTTCTCGGATGGATC 58.368 47.619 0.00 0.00 0.00 3.36
766 769 1.594862 GCTTGTTTCTCGGATGGATCG 59.405 52.381 0.00 0.00 0.00 3.69
767 770 2.738643 GCTTGTTTCTCGGATGGATCGA 60.739 50.000 0.00 0.00 35.24 3.59
768 771 3.722147 CTTGTTTCTCGGATGGATCGAT 58.278 45.455 0.00 0.00 36.01 3.59
769 772 3.097877 TGTTTCTCGGATGGATCGATG 57.902 47.619 0.54 0.00 36.01 3.84
770 773 2.224042 TGTTTCTCGGATGGATCGATGG 60.224 50.000 0.54 0.00 36.01 3.51
771 774 1.704641 TTCTCGGATGGATCGATGGT 58.295 50.000 0.54 0.00 36.01 3.55
772 775 0.961753 TCTCGGATGGATCGATGGTG 59.038 55.000 0.54 0.00 36.01 4.17
773 776 0.676184 CTCGGATGGATCGATGGTGT 59.324 55.000 0.54 0.00 36.01 4.16
774 777 1.886542 CTCGGATGGATCGATGGTGTA 59.113 52.381 0.54 0.00 36.01 2.90
775 778 1.611977 TCGGATGGATCGATGGTGTAC 59.388 52.381 0.54 0.00 0.00 2.90
776 779 1.336887 CGGATGGATCGATGGTGTACC 60.337 57.143 0.54 0.00 0.00 3.34
777 780 1.971357 GGATGGATCGATGGTGTACCT 59.029 52.381 0.54 0.00 36.82 3.08
778 781 2.028930 GGATGGATCGATGGTGTACCTC 60.029 54.545 0.54 0.00 36.82 3.85
779 782 1.029681 TGGATCGATGGTGTACCTCG 58.970 55.000 0.54 13.24 37.72 4.63
780 783 0.314302 GGATCGATGGTGTACCTCGG 59.686 60.000 0.54 2.69 37.31 4.63
781 784 1.315690 GATCGATGGTGTACCTCGGA 58.684 55.000 0.54 6.90 37.31 4.55
782 785 1.887198 GATCGATGGTGTACCTCGGAT 59.113 52.381 0.54 10.27 37.31 4.18
783 786 1.771565 TCGATGGTGTACCTCGGATT 58.228 50.000 16.91 0.00 37.31 3.01
784 787 2.934887 TCGATGGTGTACCTCGGATTA 58.065 47.619 16.91 2.51 37.31 1.75
785 788 3.289836 TCGATGGTGTACCTCGGATTAA 58.710 45.455 16.91 0.00 37.31 1.40
786 789 3.893200 TCGATGGTGTACCTCGGATTAAT 59.107 43.478 16.91 0.00 37.31 1.40
787 790 4.342951 TCGATGGTGTACCTCGGATTAATT 59.657 41.667 16.91 0.00 37.31 1.40
788 791 4.684703 CGATGGTGTACCTCGGATTAATTC 59.315 45.833 12.19 0.00 34.95 2.17
789 792 5.509163 CGATGGTGTACCTCGGATTAATTCT 60.509 44.000 12.19 0.00 34.95 2.40
790 793 6.294342 CGATGGTGTACCTCGGATTAATTCTA 60.294 42.308 12.19 0.00 34.95 2.10
791 794 6.795144 TGGTGTACCTCGGATTAATTCTAA 57.205 37.500 2.32 0.00 36.82 2.10
792 795 6.576185 TGGTGTACCTCGGATTAATTCTAAC 58.424 40.000 2.32 0.00 36.82 2.34
793 796 6.154877 TGGTGTACCTCGGATTAATTCTAACA 59.845 38.462 2.32 0.00 36.82 2.41
794 797 7.043565 GGTGTACCTCGGATTAATTCTAACAA 58.956 38.462 0.00 0.00 0.00 2.83
795 798 7.713942 GGTGTACCTCGGATTAATTCTAACAAT 59.286 37.037 0.00 0.00 0.00 2.71
796 799 9.106070 GTGTACCTCGGATTAATTCTAACAATT 57.894 33.333 0.00 0.00 0.00 2.32
826 829 4.278669 AGGGCTATGTTGTACTCATCTACG 59.721 45.833 7.24 0.00 0.00 3.51
861 864 5.030936 GCTTTCGTCATAGCAGGAAATTTC 58.969 41.667 9.83 9.83 37.35 2.17
879 883 7.096230 GGAAATTTCCACAAATGTTTCTACACG 60.096 37.037 28.76 0.00 46.76 4.49
885 889 7.411274 TCCACAAATGTTTCTACACGTTAAAG 58.589 34.615 0.00 0.00 37.03 1.85
913 925 1.426751 TTTGTCGTACCCCTCAACCT 58.573 50.000 0.00 0.00 0.00 3.50
925 937 1.067516 CCTCAACCTTGCAAACCACAG 59.932 52.381 0.00 0.00 0.00 3.66
931 943 0.877213 CTTGCAAACCACAGCCAAGC 60.877 55.000 0.00 0.00 0.00 4.01
932 944 2.355009 GCAAACCACAGCCAAGCG 60.355 61.111 0.00 0.00 0.00 4.68
933 945 3.119193 CAAACCACAGCCAAGCGT 58.881 55.556 0.00 0.00 0.00 5.07
950 963 1.737363 GCGTTTTCAAAGGCAACCACA 60.737 47.619 11.19 0.00 46.01 4.17
960 973 1.963515 AGGCAACCACACAATCCTTTC 59.036 47.619 0.00 0.00 37.17 2.62
972 985 2.005960 ATCCTTTCGAGTCTCGCCCG 62.006 60.000 17.61 7.34 40.21 6.13
976 989 2.079020 TTTCGAGTCTCGCCCGTGTT 62.079 55.000 17.61 0.00 40.21 3.32
990 1008 1.529226 CGTGTTTGCAGGTGGGATAA 58.471 50.000 0.00 0.00 0.00 1.75
992 1010 1.202348 GTGTTTGCAGGTGGGATAAGC 59.798 52.381 0.00 0.00 0.00 3.09
995 1013 0.392461 TTGCAGGTGGGATAAGCGAC 60.392 55.000 0.00 0.00 0.00 5.19
1006 1024 2.593468 ATAAGCGACTGCCATGGCGT 62.593 55.000 30.87 28.64 45.51 5.68
1020 1038 2.345991 GCGTTGTGGACTGGGCTA 59.654 61.111 0.00 0.00 0.00 3.93
1071 1089 3.512516 GCAGACATTGGCGGGCTC 61.513 66.667 2.38 0.00 0.00 4.70
1188 1206 2.358737 CAAGTGCAGGACCGGGAC 60.359 66.667 6.32 8.23 0.00 4.46
1242 1261 4.373116 GGGACGCCAACGAGCTCA 62.373 66.667 15.40 0.00 43.93 4.26
1255 1274 0.391661 GAGCTCATCGTTTCCTGCCA 60.392 55.000 9.40 0.00 0.00 4.92
1274 1293 4.509737 GGGAGGAGCACGGCGTAC 62.510 72.222 14.22 7.36 0.00 3.67
1289 1308 2.561569 GCGTACCAAGTATTCATGGCT 58.438 47.619 0.00 0.00 40.51 4.75
1290 1309 2.287915 GCGTACCAAGTATTCATGGCTG 59.712 50.000 0.00 0.00 40.51 4.85
1291 1310 2.872245 CGTACCAAGTATTCATGGCTGG 59.128 50.000 0.00 0.00 40.51 4.85
1292 1311 2.442236 ACCAAGTATTCATGGCTGGG 57.558 50.000 0.00 0.00 40.51 4.45
1293 1312 1.063717 ACCAAGTATTCATGGCTGGGG 60.064 52.381 0.00 0.00 40.51 4.96
1294 1313 1.215173 CCAAGTATTCATGGCTGGGGA 59.785 52.381 0.00 0.00 0.00 4.81
1295 1314 2.579873 CAAGTATTCATGGCTGGGGAG 58.420 52.381 0.00 0.00 0.00 4.30
1296 1315 1.143813 AGTATTCATGGCTGGGGAGG 58.856 55.000 0.00 0.00 0.00 4.30
1297 1316 1.140312 GTATTCATGGCTGGGGAGGA 58.860 55.000 0.00 0.00 0.00 3.71
1298 1317 1.707427 GTATTCATGGCTGGGGAGGAT 59.293 52.381 0.00 0.00 0.00 3.24
1299 1318 1.238615 ATTCATGGCTGGGGAGGATT 58.761 50.000 0.00 0.00 0.00 3.01
1300 1319 0.259647 TTCATGGCTGGGGAGGATTG 59.740 55.000 0.00 0.00 0.00 2.67
1301 1320 1.152610 CATGGCTGGGGAGGATTGG 60.153 63.158 0.00 0.00 0.00 3.16
1302 1321 3.078843 ATGGCTGGGGAGGATTGGC 62.079 63.158 0.00 0.00 0.00 4.52
1303 1322 3.424105 GGCTGGGGAGGATTGGCT 61.424 66.667 0.00 0.00 0.00 4.75
1304 1323 2.194326 GCTGGGGAGGATTGGCTC 59.806 66.667 0.00 0.00 0.00 4.70
1305 1324 2.683465 GCTGGGGAGGATTGGCTCA 61.683 63.158 0.00 0.00 0.00 4.26
1306 1325 2.001803 CTGGGGAGGATTGGCTCAA 58.998 57.895 0.00 0.00 0.00 3.02
1307 1326 0.106819 CTGGGGAGGATTGGCTCAAG 60.107 60.000 0.00 0.00 0.00 3.02
1308 1327 1.454663 GGGGAGGATTGGCTCAAGC 60.455 63.158 0.00 0.00 41.14 4.01
1309 1328 1.611965 GGGAGGATTGGCTCAAGCT 59.388 57.895 1.46 0.00 41.70 3.74
1310 1329 0.033699 GGGAGGATTGGCTCAAGCTT 60.034 55.000 0.00 0.00 41.70 3.74
1311 1330 1.212935 GGGAGGATTGGCTCAAGCTTA 59.787 52.381 0.00 0.00 41.70 3.09
1312 1331 2.158549 GGGAGGATTGGCTCAAGCTTAT 60.159 50.000 0.00 0.00 41.70 1.73
1313 1332 3.560105 GGAGGATTGGCTCAAGCTTATT 58.440 45.455 0.00 0.00 41.70 1.40
1314 1333 3.956848 GGAGGATTGGCTCAAGCTTATTT 59.043 43.478 0.00 0.00 41.70 1.40
1315 1334 5.133221 GGAGGATTGGCTCAAGCTTATTTA 58.867 41.667 0.00 0.00 41.70 1.40
1316 1335 5.240403 GGAGGATTGGCTCAAGCTTATTTAG 59.760 44.000 0.00 0.00 41.70 1.85
1317 1336 6.006275 AGGATTGGCTCAAGCTTATTTAGA 57.994 37.500 0.00 0.00 41.70 2.10
1318 1337 6.608922 AGGATTGGCTCAAGCTTATTTAGAT 58.391 36.000 0.00 0.00 41.70 1.98
1319 1338 6.714356 AGGATTGGCTCAAGCTTATTTAGATC 59.286 38.462 0.00 0.00 41.70 2.75
1320 1339 5.991328 TTGGCTCAAGCTTATTTAGATCG 57.009 39.130 0.00 0.00 41.70 3.69
1321 1340 5.276461 TGGCTCAAGCTTATTTAGATCGA 57.724 39.130 0.00 0.00 41.70 3.59
1322 1341 5.858381 TGGCTCAAGCTTATTTAGATCGAT 58.142 37.500 0.00 0.00 41.70 3.59
1323 1342 6.993079 TGGCTCAAGCTTATTTAGATCGATA 58.007 36.000 0.00 0.00 41.70 2.92
1324 1343 7.093354 TGGCTCAAGCTTATTTAGATCGATAG 58.907 38.462 0.00 0.00 41.70 2.08
1325 1344 7.039714 TGGCTCAAGCTTATTTAGATCGATAGA 60.040 37.037 0.00 0.00 46.21 1.98
1341 1360 2.809861 TAGACGGTTCGCTCGGGTCT 62.810 60.000 0.00 0.00 40.72 3.85
1344 1363 3.069318 GGTTCGCTCGGGTCTCCT 61.069 66.667 0.00 0.00 0.00 3.69
1374 1399 4.658786 ACTCGGGCTCCCCAACCT 62.659 66.667 0.00 0.00 45.83 3.50
1666 1757 1.144057 CTGGCTTTAGATCGGCGGT 59.856 57.895 7.21 0.00 0.00 5.68
2009 2101 2.052237 GCACTGCGGTGTCGTTTG 60.052 61.111 26.00 0.00 44.65 2.93
2062 2154 3.858135 TGAAAGTCAGAGGTAGGAGGTT 58.142 45.455 0.00 0.00 0.00 3.50
2096 2188 2.579201 CACGGAGCTTCGGTGGAT 59.421 61.111 20.69 0.00 41.98 3.41
2099 2191 1.611977 CACGGAGCTTCGGTGGATATA 59.388 52.381 20.69 0.00 41.98 0.86
2101 2193 2.897969 ACGGAGCTTCGGTGGATATATT 59.102 45.455 20.69 0.00 0.00 1.28
2358 2455 0.904865 TCTGAAGATGGAGCGGTGGT 60.905 55.000 0.00 0.00 0.00 4.16
2370 2467 4.382320 GGTGGTAGTTGGCGGCGA 62.382 66.667 12.98 0.00 0.00 5.54
2403 2502 4.602259 CGCCGGACCAGTGTGTGT 62.602 66.667 5.05 0.00 0.00 3.72
2404 2503 2.972505 GCCGGACCAGTGTGTGTG 60.973 66.667 5.05 0.00 0.00 3.82
2409 2508 4.204028 ACCAGTGTGTGTGCCCCC 62.204 66.667 0.00 0.00 0.00 5.40
2455 2554 4.957327 GGGTCTCAGGTCTTAGATGTTAGT 59.043 45.833 0.00 0.00 0.00 2.24
2485 2584 4.189231 GCGATGTCTGTTTGGTATTAGGT 58.811 43.478 0.00 0.00 0.00 3.08
2549 2648 1.873591 CAGTTTGTTGCTTAGACGGCT 59.126 47.619 0.00 0.00 0.00 5.52
2552 2651 1.234615 TTGTTGCTTAGACGGCTGCC 61.235 55.000 9.11 9.11 0.00 4.85
2554 2653 1.079127 TTGCTTAGACGGCTGCCTC 60.079 57.895 17.92 12.94 0.00 4.70
2777 2879 2.125269 ACGTAACATGCCGCCTCC 60.125 61.111 0.00 0.00 0.00 4.30
2778 2880 2.125310 CGTAACATGCCGCCTCCA 60.125 61.111 0.00 0.00 0.00 3.86
2784 2886 2.676471 ATGCCGCCTCCACCAAAC 60.676 61.111 0.00 0.00 0.00 2.93
2806 2908 1.254954 ACGAGGTCCTTGTACCAGAC 58.745 55.000 10.35 0.00 42.40 3.51
2817 2919 2.033372 TGTACCAGACGACTCCACAAA 58.967 47.619 0.00 0.00 0.00 2.83
2842 2944 0.106149 AACCGTCTCCACTTCCACAC 59.894 55.000 0.00 0.00 0.00 3.82
2851 2953 0.319900 CACTTCCACACTCGTCCCAG 60.320 60.000 0.00 0.00 0.00 4.45
2872 2974 6.211515 CCAGCTGCAGGTATGAATAAAAATC 58.788 40.000 19.71 0.00 0.00 2.17
2896 2998 5.685068 CGTGAGATGCTACAGAAACTGATAG 59.315 44.000 5.76 5.28 35.18 2.08
2897 2999 6.568869 GTGAGATGCTACAGAAACTGATAGT 58.431 40.000 5.76 0.00 35.18 2.12
2900 3002 6.730175 AGATGCTACAGAAACTGATAGTACG 58.270 40.000 5.76 0.00 35.18 3.67
2902 3004 4.157105 TGCTACAGAAACTGATAGTACGCA 59.843 41.667 5.76 0.00 35.18 5.24
2903 3005 4.499758 GCTACAGAAACTGATAGTACGCAC 59.500 45.833 5.76 0.00 35.18 5.34
2908 3010 2.556534 ACTGATAGTACGCACGTTCC 57.443 50.000 0.00 0.00 0.00 3.62
2909 3011 1.814394 ACTGATAGTACGCACGTTCCA 59.186 47.619 0.00 0.00 0.00 3.53
2912 3014 2.124903 GATAGTACGCACGTTCCATGG 58.875 52.381 4.97 4.97 0.00 3.66
2933 3035 2.544267 GTGACAGTGCTACTTTGTGGTC 59.456 50.000 0.00 0.00 0.00 4.02
2962 3064 2.452505 AGGAGTCTACAGAGGTTGCTC 58.547 52.381 0.00 0.00 0.00 4.26
2963 3065 1.133407 GGAGTCTACAGAGGTTGCTCG 59.867 57.143 0.00 0.00 30.30 5.03
2964 3066 1.133407 GAGTCTACAGAGGTTGCTCGG 59.867 57.143 0.00 0.00 0.00 4.63
2995 3098 2.391678 GCATGGAACCCAGGAATTCAT 58.608 47.619 7.93 0.00 37.52 2.57
3031 3134 2.006772 CTGCCACCGATAACTTCGC 58.993 57.895 0.00 0.00 46.71 4.70
3034 3137 1.520666 CCACCGATAACTTCGCCCT 59.479 57.895 0.00 0.00 46.71 5.19
3040 3143 1.659098 CGATAACTTCGCCCTTGACAC 59.341 52.381 0.00 0.00 41.69 3.67
3042 3145 0.320073 TAACTTCGCCCTTGACACCG 60.320 55.000 0.00 0.00 0.00 4.94
3048 3151 1.296715 GCCCTTGACACCGTGATCT 59.703 57.895 5.28 0.00 0.00 2.75
3049 3152 0.741221 GCCCTTGACACCGTGATCTC 60.741 60.000 5.28 0.00 0.00 2.75
3060 3164 1.583967 GTGATCTCACGACGAGGCG 60.584 63.158 0.00 0.00 42.55 5.52
3071 3175 4.081030 CGAGGCGCTGCAGTTGTG 62.081 66.667 16.64 4.34 0.00 3.33
3074 3178 1.901650 GAGGCGCTGCAGTTGTGTAC 61.902 60.000 16.64 0.00 0.00 2.90
3117 3222 4.629958 AATTTGGGGGCCGGTGCA 62.630 61.111 1.90 0.00 40.13 4.57
3127 3232 2.616765 GGGGCCGGTGCAAAATAAAAAT 60.617 45.455 1.90 0.00 40.13 1.82
3159 3265 4.989875 ATGGCTATGGCTGACTAATTCT 57.010 40.909 0.00 0.00 38.73 2.40
3178 3284 7.747155 AATTCTCATGTCATCCAAGATGATC 57.253 36.000 10.28 5.65 29.58 2.92
3188 3294 7.289549 TGTCATCCAAGATGATCTCACTCTATT 59.710 37.037 10.28 0.00 0.00 1.73
3195 3301 6.550843 AGATGATCTCACTCTATTATTCGCG 58.449 40.000 0.00 0.00 0.00 5.87
3200 3314 3.381045 TCACTCTATTATTCGCGCTTGG 58.619 45.455 5.56 0.00 0.00 3.61
3201 3315 3.123804 CACTCTATTATTCGCGCTTGGT 58.876 45.455 5.56 0.00 0.00 3.67
3206 3320 0.167908 TTATTCGCGCTTGGTTGCAG 59.832 50.000 5.56 0.00 0.00 4.41
3211 3325 1.945662 GCGCTTGGTTGCAGTGTTG 60.946 57.895 0.00 0.00 0.00 3.33
3233 3347 2.884012 AGCAACCAATCACGTGAATCAA 59.116 40.909 24.13 0.00 0.00 2.57
3241 3355 2.139118 TCACGTGAATCAAATCGCACA 58.861 42.857 17.62 0.00 0.00 4.57
3460 3585 4.281688 AGTGGGTTGTTTCCATTTGATGAG 59.718 41.667 0.00 0.00 36.58 2.90
3553 3680 4.897076 TCCCTAATCTTCATGCATGCAATT 59.103 37.500 26.68 20.54 0.00 2.32
3554 3681 6.069994 TCCCTAATCTTCATGCATGCAATTA 58.930 36.000 26.68 20.56 0.00 1.40
3586 3750 2.884639 CCAACAGATCCGGAAAAACTGT 59.115 45.455 22.15 22.15 42.40 3.55
3638 3803 2.158769 TGCACGGGAGATAATCAAGCAT 60.159 45.455 0.00 0.00 0.00 3.79
3675 3840 4.031028 CGCAGAGAAGGAAATAAATTGCG 58.969 43.478 0.59 0.59 44.35 4.85
3815 3992 4.760047 CTTGTCGACGGCCCTGGG 62.760 72.222 8.86 8.86 0.00 4.45
3852 4029 1.272769 GTCGAGAGGTGGCTGTTAAGT 59.727 52.381 0.00 0.00 0.00 2.24
3858 4035 1.142870 AGGTGGCTGTTAAGTGCTTCA 59.857 47.619 0.55 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.687354 AGCATCCACTCAACTCCGTT 59.313 50.000 0.00 0.00 0.00 4.44
44 45 0.907486 CTGACTCCCTGAAGCATCCA 59.093 55.000 0.00 0.00 0.00 3.41
54 55 2.673523 GCACATGCCTGACTCCCT 59.326 61.111 0.00 0.00 34.31 4.20
97 99 3.822735 CACCATCATGAAGAACACCAAGT 59.177 43.478 0.00 0.00 0.00 3.16
170 172 3.181466 CCAATCATCACGGTCACCTCATA 60.181 47.826 0.00 0.00 0.00 2.15
337 339 3.430218 GGACTTGTGATGTCTTCTTCGTG 59.570 47.826 0.00 0.00 35.04 4.35
350 352 1.548719 CCATGTACTCCGGACTTGTGA 59.451 52.381 0.00 0.00 0.00 3.58
413 415 2.099405 CACAACAAACTCCACCTTGGT 58.901 47.619 0.00 0.00 39.03 3.67
457 459 2.556622 CCAAGTTCAAGCGTAACCCAAT 59.443 45.455 0.00 0.00 0.00 3.16
472 474 2.025699 ACCCACACTACAACACCAAGTT 60.026 45.455 0.00 0.00 42.42 2.66
564 566 5.047943 GCTATCTAGTCGTCATGGGTTACAT 60.048 44.000 0.00 0.00 41.57 2.29
645 648 1.660917 CTCCTCCCCGAGATAACGC 59.339 63.158 0.00 0.00 30.97 4.84
646 649 1.660917 GCTCCTCCCCGAGATAACG 59.339 63.158 0.00 0.00 30.97 3.18
647 650 1.660917 CGCTCCTCCCCGAGATAAC 59.339 63.158 0.00 0.00 30.97 1.89
648 651 2.201022 GCGCTCCTCCCCGAGATAA 61.201 63.158 0.00 0.00 30.97 1.75
649 652 2.597805 GCGCTCCTCCCCGAGATA 60.598 66.667 0.00 0.00 30.97 1.98
657 660 3.902086 GACTACCGGCGCTCCTCC 61.902 72.222 7.64 0.00 0.00 4.30
658 661 2.017559 AATGACTACCGGCGCTCCTC 62.018 60.000 7.64 0.00 0.00 3.71
659 662 2.058595 AATGACTACCGGCGCTCCT 61.059 57.895 7.64 0.00 0.00 3.69
660 663 1.883084 CAATGACTACCGGCGCTCC 60.883 63.158 7.64 0.00 0.00 4.70
661 664 2.526120 GCAATGACTACCGGCGCTC 61.526 63.158 7.64 0.00 0.00 5.03
662 665 2.511600 GCAATGACTACCGGCGCT 60.512 61.111 7.64 0.00 0.00 5.92
663 666 3.573491 GGCAATGACTACCGGCGC 61.573 66.667 0.00 0.00 0.00 6.53
664 667 1.883084 GAGGCAATGACTACCGGCG 60.883 63.158 0.00 0.00 0.00 6.46
665 668 1.883084 CGAGGCAATGACTACCGGC 60.883 63.158 0.00 0.00 0.00 6.13
666 669 1.227263 CCGAGGCAATGACTACCGG 60.227 63.158 0.00 0.00 0.00 5.28
667 670 1.227263 CCCGAGGCAATGACTACCG 60.227 63.158 0.00 0.00 0.00 4.02
668 671 1.146263 CCCCGAGGCAATGACTACC 59.854 63.158 0.00 0.00 0.00 3.18
669 672 0.105039 CTCCCCGAGGCAATGACTAC 59.895 60.000 0.00 0.00 0.00 2.73
670 673 0.325296 ACTCCCCGAGGCAATGACTA 60.325 55.000 0.00 0.00 33.35 2.59
671 674 0.325296 TACTCCCCGAGGCAATGACT 60.325 55.000 0.00 0.00 33.35 3.41
672 675 0.105039 CTACTCCCCGAGGCAATGAC 59.895 60.000 0.00 0.00 33.35 3.06
673 676 1.048724 CCTACTCCCCGAGGCAATGA 61.049 60.000 0.00 0.00 33.35 2.57
674 677 1.447643 CCTACTCCCCGAGGCAATG 59.552 63.158 0.00 0.00 33.35 2.82
675 678 3.971894 CCTACTCCCCGAGGCAAT 58.028 61.111 0.00 0.00 33.35 3.56
679 682 2.907917 CTCGCCTACTCCCCGAGG 60.908 72.222 0.00 0.00 43.33 4.63
681 684 1.304713 AAACTCGCCTACTCCCCGA 60.305 57.895 0.00 0.00 0.00 5.14
682 685 1.153628 CAAACTCGCCTACTCCCCG 60.154 63.158 0.00 0.00 0.00 5.73
683 686 1.449778 GCAAACTCGCCTACTCCCC 60.450 63.158 0.00 0.00 0.00 4.81
684 687 4.203618 GCAAACTCGCCTACTCCC 57.796 61.111 0.00 0.00 0.00 4.30
692 695 2.861006 GAGGTTCGGCAAACTCGC 59.139 61.111 1.81 0.00 36.60 5.03
694 697 1.787012 TAACGAGGTTCGGCAAACTC 58.213 50.000 3.37 5.10 45.59 3.01
695 698 1.869132 GTTAACGAGGTTCGGCAAACT 59.131 47.619 3.37 0.00 45.59 2.66
696 699 1.598601 TGTTAACGAGGTTCGGCAAAC 59.401 47.619 0.26 5.06 45.59 2.93
697 700 1.950828 TGTTAACGAGGTTCGGCAAA 58.049 45.000 0.26 0.00 45.59 3.68
698 701 1.950828 TTGTTAACGAGGTTCGGCAA 58.049 45.000 0.26 0.91 45.59 4.52
699 702 1.950828 TTTGTTAACGAGGTTCGGCA 58.049 45.000 0.26 0.00 45.59 5.69
700 703 2.740447 AGATTTGTTAACGAGGTTCGGC 59.260 45.455 0.26 0.00 45.59 5.54
701 704 3.060363 CGAGATTTGTTAACGAGGTTCGG 59.940 47.826 13.11 2.22 45.59 4.30
702 705 3.060363 CCGAGATTTGTTAACGAGGTTCG 59.940 47.826 13.63 13.63 46.93 3.95
703 706 3.992427 ACCGAGATTTGTTAACGAGGTTC 59.008 43.478 0.26 0.00 0.00 3.62
704 707 3.744426 CACCGAGATTTGTTAACGAGGTT 59.256 43.478 0.26 0.00 0.00 3.50
705 708 3.243975 ACACCGAGATTTGTTAACGAGGT 60.244 43.478 0.26 0.00 0.00 3.85
706 709 3.323243 ACACCGAGATTTGTTAACGAGG 58.677 45.455 0.26 0.00 0.00 4.63
707 710 3.059044 CGACACCGAGATTTGTTAACGAG 59.941 47.826 0.26 0.00 38.22 4.18
708 711 2.981805 CGACACCGAGATTTGTTAACGA 59.018 45.455 0.26 0.00 38.22 3.85
709 712 2.727798 ACGACACCGAGATTTGTTAACG 59.272 45.455 0.26 0.00 39.50 3.18
710 713 3.737266 TGACGACACCGAGATTTGTTAAC 59.263 43.478 0.00 0.00 39.50 2.01
711 714 3.979948 TGACGACACCGAGATTTGTTAA 58.020 40.909 0.00 0.00 39.50 2.01
712 715 3.646611 TGACGACACCGAGATTTGTTA 57.353 42.857 0.00 0.00 39.50 2.41
713 716 2.519377 TGACGACACCGAGATTTGTT 57.481 45.000 0.00 0.00 39.50 2.83
714 717 2.736721 CAATGACGACACCGAGATTTGT 59.263 45.455 0.00 0.00 39.50 2.83
715 718 2.736721 ACAATGACGACACCGAGATTTG 59.263 45.455 0.00 0.00 39.50 2.32
716 719 2.736721 CACAATGACGACACCGAGATTT 59.263 45.455 0.00 0.00 39.50 2.17
717 720 2.337583 CACAATGACGACACCGAGATT 58.662 47.619 0.00 0.00 39.50 2.40
718 721 1.996292 CACAATGACGACACCGAGAT 58.004 50.000 0.00 0.00 39.50 2.75
719 722 0.666274 GCACAATGACGACACCGAGA 60.666 55.000 0.00 0.00 39.50 4.04
720 723 0.667487 AGCACAATGACGACACCGAG 60.667 55.000 0.00 0.00 39.50 4.63
721 724 0.943835 CAGCACAATGACGACACCGA 60.944 55.000 0.00 0.00 39.50 4.69
722 725 1.221466 ACAGCACAATGACGACACCG 61.221 55.000 0.00 0.00 42.50 4.94
723 726 0.235665 CACAGCACAATGACGACACC 59.764 55.000 0.00 0.00 0.00 4.16
724 727 1.217001 TCACAGCACAATGACGACAC 58.783 50.000 0.00 0.00 0.00 3.67
725 728 2.168326 ATCACAGCACAATGACGACA 57.832 45.000 0.00 0.00 0.00 4.35
726 729 2.843077 CAATCACAGCACAATGACGAC 58.157 47.619 0.00 0.00 0.00 4.34
727 730 1.197492 GCAATCACAGCACAATGACGA 59.803 47.619 0.00 0.00 0.00 4.20
728 731 1.198408 AGCAATCACAGCACAATGACG 59.802 47.619 0.00 0.00 0.00 4.35
729 732 2.984471 CAAGCAATCACAGCACAATGAC 59.016 45.455 0.00 0.00 0.00 3.06
730 733 2.624364 ACAAGCAATCACAGCACAATGA 59.376 40.909 0.00 0.00 0.00 2.57
731 734 3.021269 ACAAGCAATCACAGCACAATG 57.979 42.857 0.00 0.00 0.00 2.82
732 735 3.738830 AACAAGCAATCACAGCACAAT 57.261 38.095 0.00 0.00 0.00 2.71
733 736 3.130869 AGAAACAAGCAATCACAGCACAA 59.869 39.130 0.00 0.00 0.00 3.33
734 737 2.689471 AGAAACAAGCAATCACAGCACA 59.311 40.909 0.00 0.00 0.00 4.57
735 738 3.303406 GAGAAACAAGCAATCACAGCAC 58.697 45.455 0.00 0.00 0.00 4.40
736 739 2.031769 CGAGAAACAAGCAATCACAGCA 60.032 45.455 0.00 0.00 0.00 4.41
737 740 2.578495 CGAGAAACAAGCAATCACAGC 58.422 47.619 0.00 0.00 0.00 4.40
738 741 2.807967 TCCGAGAAACAAGCAATCACAG 59.192 45.455 0.00 0.00 0.00 3.66
739 742 2.844946 TCCGAGAAACAAGCAATCACA 58.155 42.857 0.00 0.00 0.00 3.58
740 743 3.426695 CCATCCGAGAAACAAGCAATCAC 60.427 47.826 0.00 0.00 0.00 3.06
741 744 2.749076 CCATCCGAGAAACAAGCAATCA 59.251 45.455 0.00 0.00 0.00 2.57
742 745 3.009723 TCCATCCGAGAAACAAGCAATC 58.990 45.455 0.00 0.00 0.00 2.67
743 746 3.071874 TCCATCCGAGAAACAAGCAAT 57.928 42.857 0.00 0.00 0.00 3.56
744 747 2.559698 TCCATCCGAGAAACAAGCAA 57.440 45.000 0.00 0.00 0.00 3.91
745 748 2.632377 GATCCATCCGAGAAACAAGCA 58.368 47.619 0.00 0.00 0.00 3.91
746 749 1.594862 CGATCCATCCGAGAAACAAGC 59.405 52.381 0.00 0.00 0.00 4.01
747 750 3.165058 TCGATCCATCCGAGAAACAAG 57.835 47.619 0.00 0.00 0.00 3.16
748 751 3.457234 CATCGATCCATCCGAGAAACAA 58.543 45.455 0.00 0.00 39.55 2.83
749 752 2.224042 CCATCGATCCATCCGAGAAACA 60.224 50.000 0.00 0.00 39.55 2.83
750 753 2.224066 ACCATCGATCCATCCGAGAAAC 60.224 50.000 0.00 0.00 39.55 2.78
751 754 2.039418 ACCATCGATCCATCCGAGAAA 58.961 47.619 0.00 0.00 39.55 2.52
752 755 1.341209 CACCATCGATCCATCCGAGAA 59.659 52.381 0.00 0.00 39.55 2.87
753 756 0.961753 CACCATCGATCCATCCGAGA 59.038 55.000 0.00 0.00 39.55 4.04
754 757 0.676184 ACACCATCGATCCATCCGAG 59.324 55.000 0.00 0.00 39.55 4.63
755 758 1.611977 GTACACCATCGATCCATCCGA 59.388 52.381 0.00 0.00 40.53 4.55
756 759 1.336887 GGTACACCATCGATCCATCCG 60.337 57.143 0.00 0.00 35.64 4.18
757 760 1.971357 AGGTACACCATCGATCCATCC 59.029 52.381 0.00 0.00 38.89 3.51
758 761 2.351835 CGAGGTACACCATCGATCCATC 60.352 54.545 12.16 0.00 38.23 3.51
759 762 1.613925 CGAGGTACACCATCGATCCAT 59.386 52.381 12.16 0.00 38.23 3.41
760 763 1.029681 CGAGGTACACCATCGATCCA 58.970 55.000 12.16 0.00 38.23 3.41
761 764 0.314302 CCGAGGTACACCATCGATCC 59.686 60.000 16.68 0.00 38.23 3.36
762 765 1.315690 TCCGAGGTACACCATCGATC 58.684 55.000 16.68 0.00 38.23 3.69
763 766 1.996798 ATCCGAGGTACACCATCGAT 58.003 50.000 16.68 0.00 38.23 3.59
764 767 1.771565 AATCCGAGGTACACCATCGA 58.228 50.000 16.68 0.00 38.23 3.59
765 768 3.720949 TTAATCCGAGGTACACCATCG 57.279 47.619 0.38 7.13 38.89 3.84
766 769 5.855045 AGAATTAATCCGAGGTACACCATC 58.145 41.667 0.38 0.00 38.89 3.51
767 770 5.888982 AGAATTAATCCGAGGTACACCAT 57.111 39.130 0.38 0.00 38.89 3.55
768 771 6.154877 TGTTAGAATTAATCCGAGGTACACCA 59.845 38.462 0.38 0.00 38.89 4.17
769 772 6.576185 TGTTAGAATTAATCCGAGGTACACC 58.424 40.000 0.00 0.00 0.00 4.16
770 773 8.658499 ATTGTTAGAATTAATCCGAGGTACAC 57.342 34.615 0.00 0.00 0.00 2.90
786 789 9.914834 ACATAGCCCTTGTATTAATTGTTAGAA 57.085 29.630 0.00 0.00 0.00 2.10
787 790 9.914834 AACATAGCCCTTGTATTAATTGTTAGA 57.085 29.630 0.00 0.00 0.00 2.10
788 791 9.950680 CAACATAGCCCTTGTATTAATTGTTAG 57.049 33.333 0.00 0.00 0.00 2.34
789 792 9.469097 ACAACATAGCCCTTGTATTAATTGTTA 57.531 29.630 0.00 0.00 0.00 2.41
790 793 8.361169 ACAACATAGCCCTTGTATTAATTGTT 57.639 30.769 0.00 0.00 0.00 2.83
791 794 7.954666 ACAACATAGCCCTTGTATTAATTGT 57.045 32.000 0.00 0.00 0.00 2.71
792 795 9.120538 AGTACAACATAGCCCTTGTATTAATTG 57.879 33.333 0.00 0.00 35.76 2.32
793 796 9.338622 GAGTACAACATAGCCCTTGTATTAATT 57.661 33.333 0.00 0.00 35.76 1.40
794 797 8.491134 TGAGTACAACATAGCCCTTGTATTAAT 58.509 33.333 0.00 0.00 35.76 1.40
795 798 7.853299 TGAGTACAACATAGCCCTTGTATTAA 58.147 34.615 0.00 0.00 35.76 1.40
796 799 7.426606 TGAGTACAACATAGCCCTTGTATTA 57.573 36.000 0.00 0.00 35.76 0.98
797 800 6.308015 TGAGTACAACATAGCCCTTGTATT 57.692 37.500 0.00 0.00 35.76 1.89
798 801 5.950544 TGAGTACAACATAGCCCTTGTAT 57.049 39.130 0.00 0.00 35.76 2.29
799 802 5.661312 AGATGAGTACAACATAGCCCTTGTA 59.339 40.000 0.00 0.00 32.77 2.41
807 810 5.239744 AGCCTCGTAGATGAGTACAACATAG 59.760 44.000 0.00 0.00 33.89 2.23
826 829 0.603975 ACGAAAGCCAACTGAGCCTC 60.604 55.000 0.00 0.00 0.00 4.70
861 864 7.190871 ACTTTAACGTGTAGAAACATTTGTGG 58.809 34.615 0.00 0.00 38.08 4.17
885 889 4.635223 AGGGGTACGACAAAAGTTTCTAC 58.365 43.478 0.00 0.00 0.00 2.59
895 899 1.071071 CAAGGTTGAGGGGTACGACAA 59.929 52.381 0.00 0.00 0.00 3.18
898 902 1.122632 TGCAAGGTTGAGGGGTACGA 61.123 55.000 0.00 0.00 0.00 3.43
913 925 1.143620 GCTTGGCTGTGGTTTGCAA 59.856 52.632 0.00 0.00 0.00 4.08
925 937 0.529555 TGCCTTTGAAAACGCTTGGC 60.530 50.000 0.00 0.00 39.33 4.52
931 943 1.923864 GTGTGGTTGCCTTTGAAAACG 59.076 47.619 0.00 0.00 0.00 3.60
932 944 2.966050 TGTGTGGTTGCCTTTGAAAAC 58.034 42.857 0.00 0.00 0.00 2.43
933 945 3.685139 TTGTGTGGTTGCCTTTGAAAA 57.315 38.095 0.00 0.00 0.00 2.29
950 963 1.404315 GGCGAGACTCGAAAGGATTGT 60.404 52.381 28.43 0.00 43.74 2.71
960 973 2.049433 AAACACGGGCGAGACTCG 60.049 61.111 20.56 20.56 43.89 4.18
972 985 1.202348 GCTTATCCCACCTGCAAACAC 59.798 52.381 0.00 0.00 0.00 3.32
976 989 0.392461 GTCGCTTATCCCACCTGCAA 60.392 55.000 0.00 0.00 0.00 4.08
990 1008 4.704833 AACGCCATGGCAGTCGCT 62.705 61.111 34.93 16.15 42.06 4.93
992 1010 3.049674 ACAACGCCATGGCAGTCG 61.050 61.111 34.93 24.05 42.06 4.18
995 1013 2.672651 TCCACAACGCCATGGCAG 60.673 61.111 34.93 27.71 42.06 4.85
1006 1024 0.472925 TGACCTAGCCCAGTCCACAA 60.473 55.000 0.00 0.00 31.76 3.33
1035 1053 3.297620 CCAACCAGCTGTGCCACC 61.298 66.667 13.81 0.00 0.00 4.61
1044 1062 2.629656 AATGTCTGCGCCAACCAGC 61.630 57.895 4.18 0.00 0.00 4.85
1071 1089 3.498777 CAGCCTGCATGAACATAGAGATG 59.501 47.826 0.00 0.00 39.16 2.90
1101 1119 1.301677 CCTTCTTGTTCTGCCGAGCC 61.302 60.000 0.00 0.00 0.00 4.70
1143 1161 0.955428 GCTGGGCGATCAACAAGACA 60.955 55.000 0.00 0.00 0.00 3.41
1170 1188 3.636231 TCCCGGTCCTGCACTTGG 61.636 66.667 0.00 0.00 0.00 3.61
1205 1224 0.670854 GAAGCGTGTCTTCCAGACCC 60.671 60.000 1.46 0.00 44.44 4.46
1208 1227 1.289066 CCGAAGCGTGTCTTCCAGA 59.711 57.895 0.00 0.00 46.60 3.86
1211 1230 1.737008 GTCCCGAAGCGTGTCTTCC 60.737 63.158 0.00 0.00 46.60 3.46
1242 1261 1.915078 CTCCCCTGGCAGGAAACGAT 61.915 60.000 34.84 0.00 37.67 3.73
1247 1266 2.285668 CTCCTCCCCTGGCAGGAA 60.286 66.667 34.84 20.33 38.39 3.36
1274 1293 1.215173 TCCCCAGCCATGAATACTTGG 59.785 52.381 0.00 0.00 42.12 3.61
1289 1308 2.001803 CTTGAGCCAATCCTCCCCA 58.998 57.895 0.00 0.00 0.00 4.96
1290 1309 1.454663 GCTTGAGCCAATCCTCCCC 60.455 63.158 0.00 0.00 34.31 4.81
1291 1310 0.033699 AAGCTTGAGCCAATCCTCCC 60.034 55.000 0.00 0.00 43.38 4.30
1292 1311 2.717639 TAAGCTTGAGCCAATCCTCC 57.282 50.000 9.86 0.00 43.38 4.30
1293 1312 6.058183 TCTAAATAAGCTTGAGCCAATCCTC 58.942 40.000 9.86 0.00 43.38 3.71
1294 1313 6.006275 TCTAAATAAGCTTGAGCCAATCCT 57.994 37.500 9.86 0.00 43.38 3.24
1295 1314 6.348050 CGATCTAAATAAGCTTGAGCCAATCC 60.348 42.308 9.86 0.00 43.38 3.01
1296 1315 6.425114 TCGATCTAAATAAGCTTGAGCCAATC 59.575 38.462 9.86 5.08 43.38 2.67
1297 1316 6.291377 TCGATCTAAATAAGCTTGAGCCAAT 58.709 36.000 9.86 0.00 43.38 3.16
1298 1317 5.670485 TCGATCTAAATAAGCTTGAGCCAA 58.330 37.500 9.86 0.00 43.38 4.52
1299 1318 5.276461 TCGATCTAAATAAGCTTGAGCCA 57.724 39.130 9.86 0.00 43.38 4.75
1300 1319 7.274686 GTCTATCGATCTAAATAAGCTTGAGCC 59.725 40.741 9.86 0.00 43.38 4.70
1301 1320 7.007905 CGTCTATCGATCTAAATAAGCTTGAGC 59.992 40.741 9.86 0.00 42.86 4.26
1302 1321 7.483375 CCGTCTATCGATCTAAATAAGCTTGAG 59.517 40.741 9.86 1.21 42.86 3.02
1303 1322 7.040617 ACCGTCTATCGATCTAAATAAGCTTGA 60.041 37.037 9.86 0.00 42.86 3.02
1304 1323 7.085116 ACCGTCTATCGATCTAAATAAGCTTG 58.915 38.462 9.86 0.00 42.86 4.01
1305 1324 7.216973 ACCGTCTATCGATCTAAATAAGCTT 57.783 36.000 0.00 3.48 42.86 3.74
1306 1325 6.821031 ACCGTCTATCGATCTAAATAAGCT 57.179 37.500 0.00 0.00 42.86 3.74
1307 1326 6.248839 CGAACCGTCTATCGATCTAAATAAGC 59.751 42.308 0.00 0.00 41.43 3.09
1308 1327 6.248839 GCGAACCGTCTATCGATCTAAATAAG 59.751 42.308 0.00 0.00 41.43 1.73
1309 1328 6.072838 AGCGAACCGTCTATCGATCTAAATAA 60.073 38.462 0.00 0.00 41.43 1.40
1310 1329 5.410746 AGCGAACCGTCTATCGATCTAAATA 59.589 40.000 0.00 0.00 41.43 1.40
1311 1330 4.215827 AGCGAACCGTCTATCGATCTAAAT 59.784 41.667 0.00 0.00 41.43 1.40
1312 1331 3.562973 AGCGAACCGTCTATCGATCTAAA 59.437 43.478 0.00 0.00 41.43 1.85
1313 1332 3.136763 AGCGAACCGTCTATCGATCTAA 58.863 45.455 0.00 0.00 41.43 2.10
1314 1333 2.763933 AGCGAACCGTCTATCGATCTA 58.236 47.619 0.00 0.00 41.43 1.98
1315 1334 1.595466 AGCGAACCGTCTATCGATCT 58.405 50.000 0.00 0.00 41.43 2.75
1316 1335 1.953113 GAGCGAACCGTCTATCGATC 58.047 55.000 0.00 0.00 45.45 3.69
1317 1336 0.235144 CGAGCGAACCGTCTATCGAT 59.765 55.000 2.16 2.16 41.43 3.59
1318 1337 1.640069 CGAGCGAACCGTCTATCGA 59.360 57.895 0.00 0.00 41.43 3.59
1319 1338 1.368969 CCGAGCGAACCGTCTATCG 60.369 63.158 0.00 0.00 41.81 2.92
1320 1339 1.008767 CCCGAGCGAACCGTCTATC 60.009 63.158 0.00 0.00 0.00 2.08
1321 1340 1.722636 GACCCGAGCGAACCGTCTAT 61.723 60.000 0.00 0.00 0.00 1.98
1322 1341 2.360350 ACCCGAGCGAACCGTCTA 60.360 61.111 0.00 0.00 0.00 2.59
1323 1342 3.745803 GACCCGAGCGAACCGTCT 61.746 66.667 0.00 0.00 0.00 4.18
1324 1343 3.680338 GAGACCCGAGCGAACCGTC 62.680 68.421 0.00 0.00 0.00 4.79
1325 1344 3.745803 GAGACCCGAGCGAACCGT 61.746 66.667 0.00 0.00 0.00 4.83
1329 1348 2.754658 GGAGGAGACCCGAGCGAA 60.755 66.667 0.00 0.00 37.58 4.70
1521 1578 2.351060 CCAACGCCGTCGCTTCTATATA 60.351 50.000 0.00 0.00 39.84 0.86
1524 1581 1.518572 CCAACGCCGTCGCTTCTAT 60.519 57.895 0.00 0.00 39.84 1.98
1635 1725 2.825075 AAGCCAGATGACATGCCGCA 62.825 55.000 0.00 0.00 0.00 5.69
1666 1757 4.988716 ACCAGGTCCTCGACGCCA 62.989 66.667 0.00 0.00 32.65 5.69
1677 1768 2.839098 CCAAGCAGTCCACCAGGT 59.161 61.111 0.00 0.00 35.89 4.00
1697 1788 3.204827 CCATAGGTGCTGGCGTGC 61.205 66.667 0.00 0.00 0.00 5.34
1702 1793 0.763652 AGATCTGCCATAGGTGCTGG 59.236 55.000 0.00 0.00 36.81 4.85
1703 1794 1.880271 CAGATCTGCCATAGGTGCTG 58.120 55.000 10.38 0.00 0.00 4.41
1883 1974 3.131577 TCATCAAGGTAACGGCGTAGAAT 59.868 43.478 15.20 0.00 46.39 2.40
2009 2101 1.734465 CAAACGATGCTCCCAAGAGAC 59.266 52.381 0.00 0.00 43.39 3.36
2062 2154 2.738521 GCAAGACGAAGCCGCTCA 60.739 61.111 0.00 0.00 39.95 4.26
2232 2329 3.867226 CTGAACACGTCGCGGTCGA 62.867 63.158 25.15 7.06 43.28 4.20
2370 2467 3.753434 CGTGCTCTCAGAGGCCGT 61.753 66.667 3.18 0.00 0.00 5.68
2409 2508 1.448540 CTAGCCACTTGCCAGGTCG 60.449 63.158 0.00 0.00 42.71 4.79
2414 2513 0.539438 CCCAAACTAGCCACTTGCCA 60.539 55.000 0.00 0.00 42.71 4.92
2428 2527 3.269592 TCTAAGACCTGAGACCCCAAA 57.730 47.619 0.00 0.00 0.00 3.28
2455 2554 0.035317 AACAGACATCGCAGCCAAGA 59.965 50.000 0.00 0.00 0.00 3.02
2667 2769 1.306911 TGCCTCCCAGCCATGAGTA 60.307 57.895 0.00 0.00 0.00 2.59
2668 2770 2.611800 TGCCTCCCAGCCATGAGT 60.612 61.111 0.00 0.00 0.00 3.41
2669 2771 2.192443 CTGCCTCCCAGCCATGAG 59.808 66.667 0.00 0.00 34.21 2.90
2670 2772 3.414193 CCTGCCTCCCAGCCATGA 61.414 66.667 0.00 0.00 40.36 3.07
2676 2778 3.984193 CTTTCGGCCTGCCTCCCAG 62.984 68.421 6.60 0.00 41.41 4.45
2677 2779 4.033776 CTTTCGGCCTGCCTCCCA 62.034 66.667 6.60 0.00 0.00 4.37
2717 2819 2.685897 AGAGCATGAGGTAGAAGTCGAC 59.314 50.000 7.70 7.70 0.00 4.20
2784 2886 1.749634 CTGGTACAAGGACCTCGTAGG 59.250 57.143 2.65 0.03 40.46 3.18
2806 2908 1.602377 GGTTCACCTTTTGTGGAGTCG 59.398 52.381 0.00 0.00 45.48 4.18
2817 2919 1.070289 GAAGTGGAGACGGTTCACCTT 59.930 52.381 0.00 0.00 33.75 3.50
2826 2928 0.387367 CGAGTGTGGAAGTGGAGACG 60.387 60.000 0.00 0.00 0.00 4.18
2827 2929 0.674534 ACGAGTGTGGAAGTGGAGAC 59.325 55.000 0.00 0.00 0.00 3.36
2828 2930 0.959553 GACGAGTGTGGAAGTGGAGA 59.040 55.000 0.00 0.00 0.00 3.71
2842 2944 1.680522 ATACCTGCAGCTGGGACGAG 61.681 60.000 21.55 0.00 0.00 4.18
2851 2953 5.682862 CACGATTTTTATTCATACCTGCAGC 59.317 40.000 8.66 0.00 0.00 5.25
2872 2974 3.838120 TCAGTTTCTGTAGCATCTCACG 58.162 45.455 0.00 0.00 32.61 4.35
2881 2983 4.729086 CGTGCGTACTATCAGTTTCTGTAG 59.271 45.833 1.24 0.00 32.61 2.74
2890 2992 2.554806 TGGAACGTGCGTACTATCAG 57.445 50.000 1.24 0.00 0.00 2.90
2896 2998 0.668096 TCACCATGGAACGTGCGTAC 60.668 55.000 21.47 0.00 0.00 3.67
2897 2999 0.668096 GTCACCATGGAACGTGCGTA 60.668 55.000 21.47 0.00 0.00 4.42
2900 3002 0.884704 ACTGTCACCATGGAACGTGC 60.885 55.000 21.47 3.36 0.00 5.34
2902 3004 0.884704 GCACTGTCACCATGGAACGT 60.885 55.000 21.47 14.35 0.00 3.99
2903 3005 0.603707 AGCACTGTCACCATGGAACG 60.604 55.000 21.47 13.77 0.00 3.95
2908 3010 3.058708 CACAAAGTAGCACTGTCACCATG 60.059 47.826 0.00 0.00 0.00 3.66
2909 3011 3.141398 CACAAAGTAGCACTGTCACCAT 58.859 45.455 0.00 0.00 0.00 3.55
2912 3014 2.544267 GACCACAAAGTAGCACTGTCAC 59.456 50.000 0.00 0.00 0.00 3.67
2941 3043 3.622630 GAGCAACCTCTGTAGACTCCTA 58.377 50.000 0.00 0.00 35.16 2.94
2948 3050 0.457851 CTCCCGAGCAACCTCTGTAG 59.542 60.000 0.00 0.00 35.90 2.74
2952 3054 0.971447 GTACCTCCCGAGCAACCTCT 60.971 60.000 0.00 0.00 35.90 3.69
2995 3098 2.606519 CCTCCACCTCCGGGAACA 60.607 66.667 0.00 0.00 33.11 3.18
3021 3124 2.007608 GGTGTCAAGGGCGAAGTTATC 58.992 52.381 0.00 0.00 0.00 1.75
3030 3133 0.741221 GAGATCACGGTGTCAAGGGC 60.741 60.000 8.17 0.00 0.00 5.19
3031 3134 0.608130 TGAGATCACGGTGTCAAGGG 59.392 55.000 8.17 0.00 0.00 3.95
3052 3155 3.782244 CAACTGCAGCGCCTCGTC 61.782 66.667 15.27 0.00 0.00 4.20
3054 3157 4.081030 CACAACTGCAGCGCCTCG 62.081 66.667 15.27 0.00 0.00 4.63
3056 3159 1.961277 GTACACAACTGCAGCGCCT 60.961 57.895 15.27 0.00 0.00 5.52
3066 3170 0.688487 TGCCTACCCCAGTACACAAC 59.312 55.000 0.00 0.00 0.00 3.32
3071 3175 2.743179 GCCCTGCCTACCCCAGTAC 61.743 68.421 0.00 0.00 0.00 2.73
3117 3222 8.382405 AGCCATAGGACAAACCATTTTTATTTT 58.618 29.630 0.00 0.00 42.04 1.82
3127 3232 2.422803 GCCATAGCCATAGGACAAACCA 60.423 50.000 0.00 0.00 42.04 3.67
3159 3265 5.365895 AGTGAGATCATCTTGGATGACATGA 59.634 40.000 11.68 0.00 37.61 3.07
3178 3284 3.426859 CCAAGCGCGAATAATAGAGTGAG 59.573 47.826 12.10 0.00 0.00 3.51
3188 3294 0.953471 ACTGCAACCAAGCGCGAATA 60.953 50.000 12.10 0.00 37.31 1.75
3191 3297 3.648982 CACTGCAACCAAGCGCGA 61.649 61.111 12.10 0.00 37.31 5.87
3195 3301 0.595825 GCTCAACACTGCAACCAAGC 60.596 55.000 0.00 0.00 0.00 4.01
3201 3315 1.180907 TTGGTTGCTCAACACTGCAA 58.819 45.000 13.89 6.58 45.40 4.08
3206 3320 1.333619 ACGTGATTGGTTGCTCAACAC 59.666 47.619 13.89 5.06 42.85 3.32
3211 3325 2.483877 TGATTCACGTGATTGGTTGCTC 59.516 45.455 20.80 6.95 0.00 4.26
3233 3347 3.514309 ACCTTAAGTACTCCTGTGCGATT 59.486 43.478 0.00 0.00 33.93 3.34
3241 3355 4.910458 AATGTGCACCTTAAGTACTCCT 57.090 40.909 15.69 0.00 0.00 3.69
3272 3387 4.542697 GGGCCCTATTTTGTATTCCTTCA 58.457 43.478 17.04 0.00 0.00 3.02
3276 3391 3.322191 TGGGGCCCTATTTTGTATTCC 57.678 47.619 25.93 0.00 0.00 3.01
3282 3400 9.467796 TTTTTATAAATTTGGGGCCCTATTTTG 57.532 29.630 28.84 0.00 0.00 2.44
3327 3450 8.980143 TCAAAAGTTAATGCACCTAATAAAGC 57.020 30.769 0.00 0.00 0.00 3.51
3426 3551 5.475564 GGAAACAACCCACTAGCAAATTAGA 59.524 40.000 0.00 0.00 0.00 2.10
3485 3612 1.915769 GGAGATCTCCCCCATCCGG 60.916 68.421 28.84 0.00 43.94 5.14
3496 3623 3.498614 TCAGGGAGGAAAAGGAGATCT 57.501 47.619 0.00 0.00 0.00 2.75
3507 3634 3.203040 GGAAAGGAAATCATCAGGGAGGA 59.797 47.826 0.00 0.00 0.00 3.71
3553 3680 4.460263 GGATCTGTTGGTTGGCATGTATA 58.540 43.478 0.00 0.00 0.00 1.47
3554 3681 3.290710 GGATCTGTTGGTTGGCATGTAT 58.709 45.455 0.00 0.00 0.00 2.29
3586 3750 5.047092 GGATTCCTTTTTCATCTCAAGCCAA 60.047 40.000 0.00 0.00 0.00 4.52
3638 3803 2.202743 GCGCACGATCCTGCAGTA 60.203 61.111 13.81 0.00 36.94 2.74
3644 3809 1.140589 CTTCTCTGCGCACGATCCT 59.859 57.895 5.66 0.00 0.00 3.24
3744 3921 1.927051 AAATCTAGGGGCCCCAGATT 58.073 50.000 37.68 37.68 41.31 2.40
3815 3992 0.179081 GACCATCGTGAAGCCTACCC 60.179 60.000 0.00 0.00 0.00 3.69
3816 3993 0.527817 CGACCATCGTGAAGCCTACC 60.528 60.000 0.00 0.00 34.72 3.18
3817 3994 0.454600 TCGACCATCGTGAAGCCTAC 59.545 55.000 0.00 0.00 41.35 3.18
3818 3995 0.738975 CTCGACCATCGTGAAGCCTA 59.261 55.000 0.00 0.00 41.35 3.93
3819 3996 0.965866 TCTCGACCATCGTGAAGCCT 60.966 55.000 0.85 0.00 39.08 4.58
3820 3997 0.526524 CTCTCGACCATCGTGAAGCC 60.527 60.000 4.76 0.00 41.03 4.35
3821 3998 0.526524 CCTCTCGACCATCGTGAAGC 60.527 60.000 4.76 0.00 41.03 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.