Multiple sequence alignment - TraesCS4A01G465800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G465800 chr4A 100.000 4935 0 0 1 4935 729123925 729118991 0.000000e+00 9114.0
1 TraesCS4A01G465800 chr4A 90.118 1275 91 7 3406 4667 729152822 729154074 0.000000e+00 1624.0
2 TraesCS4A01G465800 chr4A 91.992 949 72 3 3406 4353 729654776 729655721 0.000000e+00 1328.0
3 TraesCS4A01G465800 chr4A 88.994 1054 102 13 3621 4667 729921293 729922339 0.000000e+00 1291.0
4 TraesCS4A01G465800 chr4A 92.269 802 54 4 3406 4206 729799131 729799925 0.000000e+00 1131.0
5 TraesCS4A01G465800 chr4A 92.902 634 45 0 3406 4039 729213810 729214443 0.000000e+00 922.0
6 TraesCS4A01G465800 chr4A 95.862 145 6 0 3406 3550 729921151 729921295 8.260000e-58 235.0
7 TraesCS4A01G465800 chr4A 79.195 298 43 9 3927 4213 728834112 728834401 6.520000e-44 189.0
8 TraesCS4A01G465800 chr6B 91.151 3413 281 19 1 3407 29376902 29380299 0.000000e+00 4610.0
9 TraesCS4A01G465800 chr6B 89.802 3432 309 18 1 3404 216475552 216478970 0.000000e+00 4361.0
10 TraesCS4A01G465800 chr6B 91.381 2854 193 42 1 2831 29549427 29546604 0.000000e+00 3858.0
11 TraesCS4A01G465800 chr6B 86.311 2827 337 29 1 2795 92845406 92848214 0.000000e+00 3031.0
12 TraesCS4A01G465800 chr6B 94.332 1676 88 6 1618 3288 29547741 29546068 0.000000e+00 2562.0
13 TraesCS4A01G465800 chr6B 92.370 1717 121 6 1691 3407 29691076 29689370 0.000000e+00 2436.0
14 TraesCS4A01G465800 chr6B 92.321 1719 122 9 1691 3407 269609080 269610790 0.000000e+00 2435.0
15 TraesCS4A01G465800 chr2B 89.939 3419 303 38 4 3407 140316259 140312867 0.000000e+00 4370.0
16 TraesCS4A01G465800 chr1B 93.729 2424 141 7 1 2422 340451937 340449523 0.000000e+00 3624.0
17 TraesCS4A01G465800 chr1B 89.707 2837 259 28 4 2831 316910683 316907871 0.000000e+00 3591.0
18 TraesCS4A01G465800 chr5B 91.163 2682 196 31 1 2660 263029222 263031884 0.000000e+00 3602.0
19 TraesCS4A01G465800 chr5B 91.201 2432 191 16 1 2422 66063545 66065963 0.000000e+00 3284.0
20 TraesCS4A01G465800 chr3B 91.339 2667 176 45 1 2644 246757267 246754633 0.000000e+00 3594.0
21 TraesCS4A01G465800 chr3B 90.498 1726 140 17 1691 3407 162528899 162530609 0.000000e+00 2257.0
22 TraesCS4A01G465800 chr3B 100.000 28 0 0 4449 4476 670396900 670396927 9.000000e-03 52.8
23 TraesCS4A01G465800 chr7B 83.981 2803 353 65 1 2755 154150061 154152815 0.000000e+00 2601.0
24 TraesCS4A01G465800 chr7B 91.011 1791 150 9 1618 3404 408915075 408916858 0.000000e+00 2405.0
25 TraesCS4A01G465800 chr7A 89.977 1277 98 14 3406 4667 9364385 9365646 0.000000e+00 1622.0
26 TraesCS4A01G465800 chr7A 93.078 939 55 7 3406 4338 9683093 9682159 0.000000e+00 1365.0
27 TraesCS4A01G465800 chr7A 88.857 350 35 4 4321 4667 9682145 9681797 1.270000e-115 427.0
28 TraesCS4A01G465800 chr7D 89.286 1036 65 17 3406 4441 10057297 10058286 0.000000e+00 1256.0
29 TraesCS4A01G465800 chr2D 85.631 515 71 1 3407 3921 564438696 564439207 5.620000e-149 538.0
30 TraesCS4A01G465800 chr2D 100.000 33 0 0 4444 4476 313575441 313575473 1.480000e-05 62.1
31 TraesCS4A01G465800 chr2A 80.325 493 85 9 3407 3894 705268841 705269326 3.630000e-96 363.0
32 TraesCS4A01G465800 chr2A 88.034 117 14 0 4307 4423 723633607 723633723 6.660000e-29 139.0
33 TraesCS4A01G465800 chr5D 100.000 28 0 0 4449 4476 219502564 219502591 9.000000e-03 52.8
34 TraesCS4A01G465800 chr4D 100.000 28 0 0 4449 4476 306454540 306454567 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G465800 chr4A 729118991 729123925 4934 True 9114 9114 100.0000 1 4935 1 chr4A.!!$R1 4934
1 TraesCS4A01G465800 chr4A 729152822 729154074 1252 False 1624 1624 90.1180 3406 4667 1 chr4A.!!$F2 1261
2 TraesCS4A01G465800 chr4A 729654776 729655721 945 False 1328 1328 91.9920 3406 4353 1 chr4A.!!$F4 947
3 TraesCS4A01G465800 chr4A 729799131 729799925 794 False 1131 1131 92.2690 3406 4206 1 chr4A.!!$F5 800
4 TraesCS4A01G465800 chr4A 729213810 729214443 633 False 922 922 92.9020 3406 4039 1 chr4A.!!$F3 633
5 TraesCS4A01G465800 chr4A 729921151 729922339 1188 False 763 1291 92.4280 3406 4667 2 chr4A.!!$F6 1261
6 TraesCS4A01G465800 chr6B 29376902 29380299 3397 False 4610 4610 91.1510 1 3407 1 chr6B.!!$F1 3406
7 TraesCS4A01G465800 chr6B 216475552 216478970 3418 False 4361 4361 89.8020 1 3404 1 chr6B.!!$F3 3403
8 TraesCS4A01G465800 chr6B 29546068 29549427 3359 True 3210 3858 92.8565 1 3288 2 chr6B.!!$R2 3287
9 TraesCS4A01G465800 chr6B 92845406 92848214 2808 False 3031 3031 86.3110 1 2795 1 chr6B.!!$F2 2794
10 TraesCS4A01G465800 chr6B 29689370 29691076 1706 True 2436 2436 92.3700 1691 3407 1 chr6B.!!$R1 1716
11 TraesCS4A01G465800 chr6B 269609080 269610790 1710 False 2435 2435 92.3210 1691 3407 1 chr6B.!!$F4 1716
12 TraesCS4A01G465800 chr2B 140312867 140316259 3392 True 4370 4370 89.9390 4 3407 1 chr2B.!!$R1 3403
13 TraesCS4A01G465800 chr1B 340449523 340451937 2414 True 3624 3624 93.7290 1 2422 1 chr1B.!!$R2 2421
14 TraesCS4A01G465800 chr1B 316907871 316910683 2812 True 3591 3591 89.7070 4 2831 1 chr1B.!!$R1 2827
15 TraesCS4A01G465800 chr5B 263029222 263031884 2662 False 3602 3602 91.1630 1 2660 1 chr5B.!!$F2 2659
16 TraesCS4A01G465800 chr5B 66063545 66065963 2418 False 3284 3284 91.2010 1 2422 1 chr5B.!!$F1 2421
17 TraesCS4A01G465800 chr3B 246754633 246757267 2634 True 3594 3594 91.3390 1 2644 1 chr3B.!!$R1 2643
18 TraesCS4A01G465800 chr3B 162528899 162530609 1710 False 2257 2257 90.4980 1691 3407 1 chr3B.!!$F1 1716
19 TraesCS4A01G465800 chr7B 154150061 154152815 2754 False 2601 2601 83.9810 1 2755 1 chr7B.!!$F1 2754
20 TraesCS4A01G465800 chr7B 408915075 408916858 1783 False 2405 2405 91.0110 1618 3404 1 chr7B.!!$F2 1786
21 TraesCS4A01G465800 chr7A 9364385 9365646 1261 False 1622 1622 89.9770 3406 4667 1 chr7A.!!$F1 1261
22 TraesCS4A01G465800 chr7A 9681797 9683093 1296 True 896 1365 90.9675 3406 4667 2 chr7A.!!$R1 1261
23 TraesCS4A01G465800 chr7D 10057297 10058286 989 False 1256 1256 89.2860 3406 4441 1 chr7D.!!$F1 1035
24 TraesCS4A01G465800 chr2D 564438696 564439207 511 False 538 538 85.6310 3407 3921 1 chr2D.!!$F2 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 395 1.821216 TGGTTCTTCGCAGAAATCCC 58.179 50.0 0.00 0.0 45.90 3.85 F
1030 1094 0.167470 CCGACTTGAGTCTCGCGTTA 59.833 55.0 5.77 0.0 42.66 3.18 F
2164 2470 0.732571 CTCAGAGGAGAGAGACGCAC 59.267 60.0 0.00 0.0 44.26 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 2470 0.392729 AGGACGAGGTACAGGTCGAG 60.393 60.0 15.82 0.0 39.53 4.04 R
2426 2952 0.666274 TGCAGTCTAAACACTCGCCG 60.666 55.0 0.00 0.0 0.00 6.46 R
3987 4838 0.038892 GTGAAGAGCAACCCGACGTA 60.039 55.0 0.00 0.0 0.00 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 196 4.988540 TCTGAAGAATACGTCCTGTTGTTG 59.011 41.667 0.00 0.00 0.00 3.33
186 199 5.587043 TGAAGAATACGTCCTGTTGTTGTTT 59.413 36.000 0.00 0.00 0.00 2.83
188 201 6.445357 AGAATACGTCCTGTTGTTGTTTTT 57.555 33.333 0.00 0.00 0.00 1.94
380 395 1.821216 TGGTTCTTCGCAGAAATCCC 58.179 50.000 0.00 0.00 45.90 3.85
541 557 7.464577 GCTTTTGTCCTTCATCTGTTTCAAAAC 60.465 37.037 0.00 0.00 39.33 2.43
558 576 4.947388 TCAAAACTTGACCTTGCTGTAACT 59.053 37.500 0.00 0.00 34.08 2.24
670 732 7.040823 AGTCACCAAGCTTGAAGAAGAAAATAG 60.041 37.037 28.05 8.38 0.00 1.73
945 1009 6.039382 GCCAAAACTTTGAAGAGGAAACTAGA 59.961 38.462 0.00 0.00 40.05 2.43
978 1042 2.261671 CTGGACCCCGTCAACTCG 59.738 66.667 0.00 0.00 33.68 4.18
1030 1094 0.167470 CCGACTTGAGTCTCGCGTTA 59.833 55.000 5.77 0.00 42.66 3.18
1032 1096 1.615502 GACTTGAGTCTCGCGTTACC 58.384 55.000 5.77 1.05 41.65 2.85
1059 1123 3.194755 TCGTTGACTATCTTGCAAGGCTA 59.805 43.478 25.73 16.02 0.00 3.93
1537 1603 4.062293 TGAACTTGGATTCGACGTTTGAT 58.938 39.130 0.00 0.00 0.00 2.57
1686 1759 4.070009 GTTCACCACTCGGTAGGATTTTT 58.930 43.478 0.00 0.00 46.94 1.94
1687 1760 3.670625 TCACCACTCGGTAGGATTTTTG 58.329 45.455 0.00 0.00 46.94 2.44
1740 1813 1.379977 CCGAGTGGGAGGTCTGCTA 60.380 63.158 0.00 0.00 38.47 3.49
1750 1823 1.139947 GGTCTGCTACTCACTCGGC 59.860 63.158 0.00 0.00 0.00 5.54
1774 1849 6.289064 CAGGATTTTTATACCTTAGGCGAGT 58.711 40.000 0.00 0.00 31.06 4.18
1989 2288 5.367352 TCGGCAGGATTTTTATACCTTAGGA 59.633 40.000 4.77 0.00 31.06 2.94
2164 2470 0.732571 CTCAGAGGAGAGAGACGCAC 59.267 60.000 0.00 0.00 44.26 5.34
2173 2479 2.955402 GAGACGCACTCGACCTGT 59.045 61.111 0.00 0.00 39.41 4.00
2426 2952 2.409371 GCGCACGTTGTACTTGTACTTC 60.409 50.000 0.30 4.78 0.00 3.01
2533 3135 1.599047 GACTGCAGCTAAGCCTCCA 59.401 57.895 15.27 0.00 0.00 3.86
2674 3428 0.320421 GGCGAGTACTTGGACTGCAA 60.320 55.000 12.18 0.00 0.00 4.08
2689 3443 0.685097 TGCAACTAAGCCTCCGAGTT 59.315 50.000 0.00 0.00 33.71 3.01
2760 3591 2.633488 GATTCGCAGCTAAACCTTCCT 58.367 47.619 0.00 0.00 0.00 3.36
3032 3882 3.539592 CGTCGATATTGTGCTTGACGTTC 60.540 47.826 4.56 0.00 41.95 3.95
3121 3971 5.972107 AGCTTATGTTGTTTCTGCTGATT 57.028 34.783 0.00 0.00 0.00 2.57
3207 4057 3.325870 CGCAAGTCTTGTTGGTAGATGA 58.674 45.455 14.03 0.00 0.00 2.92
3690 4540 4.393990 GCAGTACCCGCTTAGTAATGTTTT 59.606 41.667 6.86 0.00 37.91 2.43
3697 4547 5.163794 CCCGCTTAGTAATGTTTTCATCGTT 60.164 40.000 0.00 0.00 39.94 3.85
3778 4628 8.918202 TGTTTCAAGTATTTCTAGTCCAACAT 57.082 30.769 0.00 0.00 0.00 2.71
3865 4715 9.071276 CAGGACAAGATATATTTGGTATTTGCT 57.929 33.333 10.43 0.00 0.00 3.91
3942 4792 3.329386 TGATAGATGAATAAGCCTGCGC 58.671 45.455 0.00 0.00 0.00 6.09
3987 4838 2.418910 CGGGAGATGGAGCTGTCGT 61.419 63.158 0.00 0.00 0.00 4.34
4060 4911 2.697751 CCATGACCTCTACTTCCCTCAG 59.302 54.545 0.00 0.00 0.00 3.35
4091 4944 7.390718 AGGTGATTATTGTGGAAAGTTGTACTC 59.609 37.037 0.00 0.00 0.00 2.59
4122 4975 2.609459 GAGTGTTGAGTGTTCACTGTGG 59.391 50.000 10.29 0.00 41.58 4.17
4127 4980 1.280710 TGAGTGTTCACTGTGGGTGTT 59.719 47.619 10.29 0.00 45.50 3.32
4231 5084 2.225017 ACAGGACCTACCAAACCAATGG 60.225 50.000 0.00 0.00 46.38 3.16
4243 5096 5.792741 CCAAACCAATGGTCATATGTTGTT 58.207 37.500 4.95 0.00 33.12 2.83
4266 5119 5.991328 TTATGATTTCTTCGCATGTCCTC 57.009 39.130 0.00 0.00 0.00 3.71
4267 5120 2.632377 TGATTTCTTCGCATGTCCTCC 58.368 47.619 0.00 0.00 0.00 4.30
4277 5133 2.095567 CGCATGTCCTCCTTTTGTCTTG 60.096 50.000 0.00 0.00 0.00 3.02
4297 5159 5.127519 TCTTGTTAGCCCGCTATACACTTTA 59.872 40.000 0.00 0.00 0.00 1.85
4316 5178 9.582648 ACACTTTAAATATACCAAAACAGGACT 57.417 29.630 0.00 0.00 0.00 3.85
4317 5179 9.840427 CACTTTAAATATACCAAAACAGGACTG 57.160 33.333 0.00 0.00 0.00 3.51
4324 5214 4.170468 ACCAAAACAGGACTGTCAGATT 57.830 40.909 6.91 0.05 44.13 2.40
4414 5305 8.604640 ATTCTAGACAGATGCAACTATTGATG 57.395 34.615 0.00 0.00 0.00 3.07
4503 5403 1.675641 GTGCTCGATGTTTGGCCCT 60.676 57.895 0.00 0.00 0.00 5.19
4508 5408 1.207089 CTCGATGTTTGGCCCTCTGTA 59.793 52.381 0.00 0.00 0.00 2.74
4509 5409 1.837439 TCGATGTTTGGCCCTCTGTAT 59.163 47.619 0.00 0.00 0.00 2.29
4580 5492 9.871238 TGAGAAATAGTAACTTGGTGATAGTTC 57.129 33.333 0.00 0.00 37.12 3.01
4613 5525 1.942657 CCTGTCCAAATCTATGTGGCG 59.057 52.381 0.00 0.00 34.68 5.69
4617 5529 1.837439 TCCAAATCTATGTGGCGGTCT 59.163 47.619 0.00 0.00 34.68 3.85
4620 5532 3.270027 CAAATCTATGTGGCGGTCTTCA 58.730 45.455 0.00 0.00 0.00 3.02
4622 5534 0.824109 TCTATGTGGCGGTCTTCAGG 59.176 55.000 0.00 0.00 0.00 3.86
4629 5541 1.092345 GGCGGTCTTCAGGAATGAGC 61.092 60.000 0.00 0.00 0.00 4.26
4652 5564 4.619394 CGAAGCTTCTGACAGTACCTGAAT 60.619 45.833 23.50 0.00 35.18 2.57
4667 5579 7.572724 CAGTACCTGAATTCTGAAGCTTTTCAG 60.573 40.741 22.61 22.61 40.64 3.02
4668 5580 5.136105 ACCTGAATTCTGAAGCTTTTCAGT 58.864 37.500 25.34 16.04 46.37 3.41
4669 5581 5.595952 ACCTGAATTCTGAAGCTTTTCAGTT 59.404 36.000 25.34 15.65 46.37 3.16
4670 5582 6.097412 ACCTGAATTCTGAAGCTTTTCAGTTT 59.903 34.615 25.34 16.20 46.37 2.66
4671 5583 6.420008 CCTGAATTCTGAAGCTTTTCAGTTTG 59.580 38.462 25.34 13.66 46.37 2.93
4672 5584 6.866480 TGAATTCTGAAGCTTTTCAGTTTGT 58.134 32.000 13.78 0.87 46.37 2.83
4673 5585 7.995289 TGAATTCTGAAGCTTTTCAGTTTGTA 58.005 30.769 13.78 0.00 46.37 2.41
4674 5586 8.131100 TGAATTCTGAAGCTTTTCAGTTTGTAG 58.869 33.333 13.78 0.00 46.37 2.74
4675 5587 7.573968 ATTCTGAAGCTTTTCAGTTTGTAGT 57.426 32.000 13.78 0.00 46.37 2.73
4676 5588 7.391148 TTCTGAAGCTTTTCAGTTTGTAGTT 57.609 32.000 13.78 0.00 46.37 2.24
4677 5589 7.016361 TCTGAAGCTTTTCAGTTTGTAGTTC 57.984 36.000 13.78 0.00 46.37 3.01
4678 5590 6.038271 TCTGAAGCTTTTCAGTTTGTAGTTCC 59.962 38.462 13.78 0.00 46.37 3.62
4679 5591 5.885912 TGAAGCTTTTCAGTTTGTAGTTCCT 59.114 36.000 0.00 0.00 0.00 3.36
4680 5592 6.038271 TGAAGCTTTTCAGTTTGTAGTTCCTC 59.962 38.462 0.00 0.00 0.00 3.71
4681 5593 4.822350 AGCTTTTCAGTTTGTAGTTCCTCC 59.178 41.667 0.00 0.00 0.00 4.30
4682 5594 4.023107 GCTTTTCAGTTTGTAGTTCCTCCC 60.023 45.833 0.00 0.00 0.00 4.30
4683 5595 4.781775 TTTCAGTTTGTAGTTCCTCCCA 57.218 40.909 0.00 0.00 0.00 4.37
4684 5596 3.764237 TCAGTTTGTAGTTCCTCCCAC 57.236 47.619 0.00 0.00 0.00 4.61
4685 5597 2.036733 TCAGTTTGTAGTTCCTCCCACG 59.963 50.000 0.00 0.00 0.00 4.94
4686 5598 1.154197 GTTTGTAGTTCCTCCCACGC 58.846 55.000 0.00 0.00 0.00 5.34
4687 5599 0.035739 TTTGTAGTTCCTCCCACGCC 59.964 55.000 0.00 0.00 0.00 5.68
4688 5600 1.833787 TTGTAGTTCCTCCCACGCCC 61.834 60.000 0.00 0.00 0.00 6.13
4689 5601 3.072468 TAGTTCCTCCCACGCCCG 61.072 66.667 0.00 0.00 0.00 6.13
4695 5607 4.697756 CTCCCACGCCCGCTTCAA 62.698 66.667 0.00 0.00 0.00 2.69
4696 5608 4.257654 TCCCACGCCCGCTTCAAA 62.258 61.111 0.00 0.00 0.00 2.69
4697 5609 3.061848 CCCACGCCCGCTTCAAAT 61.062 61.111 0.00 0.00 0.00 2.32
4698 5610 2.179018 CCACGCCCGCTTCAAATG 59.821 61.111 0.00 0.00 0.00 2.32
4699 5611 2.331893 CCACGCCCGCTTCAAATGA 61.332 57.895 0.00 0.00 0.00 2.57
4700 5612 1.135315 CACGCCCGCTTCAAATGAG 59.865 57.895 0.00 0.00 0.00 2.90
4701 5613 1.302511 ACGCCCGCTTCAAATGAGT 60.303 52.632 0.00 0.00 0.00 3.41
4702 5614 0.036765 ACGCCCGCTTCAAATGAGTA 60.037 50.000 0.00 0.00 0.00 2.59
4703 5615 0.652592 CGCCCGCTTCAAATGAGTAG 59.347 55.000 0.00 0.00 0.00 2.57
4704 5616 1.739067 GCCCGCTTCAAATGAGTAGT 58.261 50.000 0.00 0.00 0.00 2.73
4705 5617 1.398390 GCCCGCTTCAAATGAGTAGTG 59.602 52.381 0.00 0.00 0.00 2.74
4706 5618 1.398390 CCCGCTTCAAATGAGTAGTGC 59.602 52.381 0.00 0.00 0.00 4.40
4707 5619 2.350522 CCGCTTCAAATGAGTAGTGCT 58.649 47.619 0.00 0.00 0.00 4.40
4708 5620 2.094894 CCGCTTCAAATGAGTAGTGCTG 59.905 50.000 0.00 0.00 0.00 4.41
4709 5621 2.995939 CGCTTCAAATGAGTAGTGCTGA 59.004 45.455 0.00 0.00 0.00 4.26
4710 5622 3.061831 CGCTTCAAATGAGTAGTGCTGAG 59.938 47.826 0.00 0.00 0.00 3.35
4711 5623 3.181512 GCTTCAAATGAGTAGTGCTGAGC 60.182 47.826 0.00 0.00 0.00 4.26
4712 5624 2.977914 TCAAATGAGTAGTGCTGAGCC 58.022 47.619 0.23 0.00 0.00 4.70
4713 5625 2.568956 TCAAATGAGTAGTGCTGAGCCT 59.431 45.455 0.23 0.90 0.00 4.58
4714 5626 2.935201 CAAATGAGTAGTGCTGAGCCTC 59.065 50.000 0.23 1.36 0.00 4.70
4715 5627 1.857965 ATGAGTAGTGCTGAGCCTCA 58.142 50.000 12.33 12.33 36.67 3.86
4716 5628 0.891373 TGAGTAGTGCTGAGCCTCAC 59.109 55.000 0.23 0.00 0.00 3.51
4717 5629 1.181786 GAGTAGTGCTGAGCCTCACT 58.818 55.000 0.23 0.98 44.76 3.41
4718 5630 0.894141 AGTAGTGCTGAGCCTCACTG 59.106 55.000 0.23 0.00 42.83 3.66
4719 5631 0.605589 GTAGTGCTGAGCCTCACTGT 59.394 55.000 0.23 0.00 42.83 3.55
4720 5632 0.891373 TAGTGCTGAGCCTCACTGTC 59.109 55.000 0.23 0.00 42.83 3.51
4721 5633 1.735920 GTGCTGAGCCTCACTGTCG 60.736 63.158 0.23 0.00 0.00 4.35
4722 5634 1.903404 TGCTGAGCCTCACTGTCGA 60.903 57.895 0.23 0.00 0.00 4.20
4723 5635 1.445238 GCTGAGCCTCACTGTCGAC 60.445 63.158 9.11 9.11 0.00 4.20
4724 5636 1.154131 CTGAGCCTCACTGTCGACG 60.154 63.158 11.62 8.41 0.00 5.12
4725 5637 2.505118 GAGCCTCACTGTCGACGC 60.505 66.667 11.62 6.92 0.00 5.19
4726 5638 3.973267 GAGCCTCACTGTCGACGCC 62.973 68.421 11.62 0.00 0.00 5.68
4728 5640 3.680786 CCTCACTGTCGACGCCCA 61.681 66.667 11.62 0.00 0.00 5.36
4729 5641 2.126307 CTCACTGTCGACGCCCAG 60.126 66.667 11.62 5.10 34.82 4.45
4730 5642 2.596338 TCACTGTCGACGCCCAGA 60.596 61.111 17.61 1.56 32.93 3.86
4731 5643 2.430921 CACTGTCGACGCCCAGAC 60.431 66.667 17.61 0.00 37.85 3.51
4732 5644 2.597805 ACTGTCGACGCCCAGACT 60.598 61.111 17.61 0.00 38.16 3.24
4733 5645 2.126307 CTGTCGACGCCCAGACTG 60.126 66.667 11.62 0.00 38.16 3.51
4734 5646 4.357947 TGTCGACGCCCAGACTGC 62.358 66.667 11.62 0.00 38.16 4.40
4735 5647 4.057428 GTCGACGCCCAGACTGCT 62.057 66.667 0.00 0.00 34.74 4.24
4736 5648 2.360726 TCGACGCCCAGACTGCTA 60.361 61.111 0.00 0.00 0.00 3.49
4737 5649 2.103143 CGACGCCCAGACTGCTAG 59.897 66.667 0.00 0.00 0.00 3.42
4738 5650 2.202810 GACGCCCAGACTGCTAGC 60.203 66.667 8.10 8.10 0.00 3.42
4739 5651 3.724914 GACGCCCAGACTGCTAGCC 62.725 68.421 13.29 0.00 0.00 3.93
4740 5652 3.774528 CGCCCAGACTGCTAGCCA 61.775 66.667 13.29 0.00 0.00 4.75
4741 5653 2.124942 GCCCAGACTGCTAGCCAC 60.125 66.667 13.29 3.49 0.00 5.01
4742 5654 2.959484 GCCCAGACTGCTAGCCACA 61.959 63.158 13.29 0.00 0.00 4.17
4743 5655 1.078848 CCCAGACTGCTAGCCACAC 60.079 63.158 13.29 1.21 0.00 3.82
4744 5656 1.078848 CCAGACTGCTAGCCACACC 60.079 63.158 13.29 0.00 0.00 4.16
4745 5657 1.548357 CCAGACTGCTAGCCACACCT 61.548 60.000 13.29 0.00 0.00 4.00
4746 5658 0.108424 CAGACTGCTAGCCACACCTC 60.108 60.000 13.29 0.00 0.00 3.85
4747 5659 1.219393 GACTGCTAGCCACACCTCC 59.781 63.158 13.29 0.00 0.00 4.30
4748 5660 1.536418 ACTGCTAGCCACACCTCCA 60.536 57.895 13.29 0.00 0.00 3.86
4749 5661 1.078848 CTGCTAGCCACACCTCCAC 60.079 63.158 13.29 0.00 0.00 4.02
4750 5662 1.830587 CTGCTAGCCACACCTCCACA 61.831 60.000 13.29 0.00 0.00 4.17
4751 5663 1.078848 GCTAGCCACACCTCCACAG 60.079 63.158 2.29 0.00 0.00 3.66
4752 5664 1.078848 CTAGCCACACCTCCACAGC 60.079 63.158 0.00 0.00 0.00 4.40
4753 5665 2.527951 CTAGCCACACCTCCACAGCC 62.528 65.000 0.00 0.00 0.00 4.85
4754 5666 4.269523 GCCACACCTCCACAGCCA 62.270 66.667 0.00 0.00 0.00 4.75
4755 5667 2.281761 CCACACCTCCACAGCCAC 60.282 66.667 0.00 0.00 0.00 5.01
4756 5668 2.510411 CACACCTCCACAGCCACA 59.490 61.111 0.00 0.00 0.00 4.17
4757 5669 1.152984 CACACCTCCACAGCCACAA 60.153 57.895 0.00 0.00 0.00 3.33
4758 5670 0.538057 CACACCTCCACAGCCACAAT 60.538 55.000 0.00 0.00 0.00 2.71
4759 5671 1.064003 ACACCTCCACAGCCACAATA 58.936 50.000 0.00 0.00 0.00 1.90
4760 5672 1.271379 ACACCTCCACAGCCACAATAC 60.271 52.381 0.00 0.00 0.00 1.89
4761 5673 1.064003 ACCTCCACAGCCACAATACA 58.936 50.000 0.00 0.00 0.00 2.29
4762 5674 1.423541 ACCTCCACAGCCACAATACAA 59.576 47.619 0.00 0.00 0.00 2.41
4763 5675 1.812571 CCTCCACAGCCACAATACAAC 59.187 52.381 0.00 0.00 0.00 3.32
4764 5676 1.812571 CTCCACAGCCACAATACAACC 59.187 52.381 0.00 0.00 0.00 3.77
4765 5677 1.143889 TCCACAGCCACAATACAACCA 59.856 47.619 0.00 0.00 0.00 3.67
4766 5678 1.959985 CCACAGCCACAATACAACCAA 59.040 47.619 0.00 0.00 0.00 3.67
4767 5679 2.288152 CCACAGCCACAATACAACCAAC 60.288 50.000 0.00 0.00 0.00 3.77
4768 5680 2.360483 CACAGCCACAATACAACCAACA 59.640 45.455 0.00 0.00 0.00 3.33
4769 5681 3.005684 CACAGCCACAATACAACCAACAT 59.994 43.478 0.00 0.00 0.00 2.71
4770 5682 3.255642 ACAGCCACAATACAACCAACATC 59.744 43.478 0.00 0.00 0.00 3.06
4771 5683 3.507233 CAGCCACAATACAACCAACATCT 59.493 43.478 0.00 0.00 0.00 2.90
4772 5684 4.022068 CAGCCACAATACAACCAACATCTT 60.022 41.667 0.00 0.00 0.00 2.40
4773 5685 4.218417 AGCCACAATACAACCAACATCTTC 59.782 41.667 0.00 0.00 0.00 2.87
4774 5686 4.022416 GCCACAATACAACCAACATCTTCA 60.022 41.667 0.00 0.00 0.00 3.02
4775 5687 5.508825 GCCACAATACAACCAACATCTTCAA 60.509 40.000 0.00 0.00 0.00 2.69
4776 5688 6.690530 CCACAATACAACCAACATCTTCAAT 58.309 36.000 0.00 0.00 0.00 2.57
4777 5689 7.153985 CCACAATACAACCAACATCTTCAATT 58.846 34.615 0.00 0.00 0.00 2.32
4778 5690 7.329226 CCACAATACAACCAACATCTTCAATTC 59.671 37.037 0.00 0.00 0.00 2.17
4779 5691 8.084073 CACAATACAACCAACATCTTCAATTCT 58.916 33.333 0.00 0.00 0.00 2.40
4780 5692 8.641541 ACAATACAACCAACATCTTCAATTCTT 58.358 29.630 0.00 0.00 0.00 2.52
4799 5711 9.793252 CAATTCTTATATCTTCAAAACACCTGG 57.207 33.333 0.00 0.00 0.00 4.45
4800 5712 9.533831 AATTCTTATATCTTCAAAACACCTGGT 57.466 29.630 0.00 0.00 0.00 4.00
4801 5713 8.934023 TTCTTATATCTTCAAAACACCTGGTT 57.066 30.769 0.00 0.00 42.98 3.67
4802 5714 8.335532 TCTTATATCTTCAAAACACCTGGTTG 57.664 34.615 0.00 0.00 40.35 3.77
4803 5715 3.733443 ATCTTCAAAACACCTGGTTGC 57.267 42.857 0.00 0.00 40.35 4.17
4804 5716 2.451490 TCTTCAAAACACCTGGTTGCA 58.549 42.857 0.00 0.00 40.35 4.08
4805 5717 3.030291 TCTTCAAAACACCTGGTTGCAT 58.970 40.909 0.00 0.00 40.35 3.96
4806 5718 3.450457 TCTTCAAAACACCTGGTTGCATT 59.550 39.130 0.00 0.00 40.35 3.56
4807 5719 3.451141 TCAAAACACCTGGTTGCATTC 57.549 42.857 0.00 0.00 40.35 2.67
4808 5720 2.126467 CAAAACACCTGGTTGCATTCG 58.874 47.619 0.00 0.00 40.35 3.34
4809 5721 1.686355 AAACACCTGGTTGCATTCGA 58.314 45.000 0.00 0.00 40.35 3.71
4810 5722 1.238439 AACACCTGGTTGCATTCGAG 58.762 50.000 0.00 0.00 38.60 4.04
4811 5723 0.396435 ACACCTGGTTGCATTCGAGA 59.604 50.000 0.00 0.00 0.00 4.04
4812 5724 1.081892 CACCTGGTTGCATTCGAGAG 58.918 55.000 0.00 0.00 0.00 3.20
4813 5725 0.687354 ACCTGGTTGCATTCGAGAGT 59.313 50.000 0.00 0.00 0.00 3.24
4814 5726 1.072331 ACCTGGTTGCATTCGAGAGTT 59.928 47.619 0.00 0.00 0.00 3.01
4815 5727 2.301870 ACCTGGTTGCATTCGAGAGTTA 59.698 45.455 0.00 0.00 0.00 2.24
4816 5728 3.055094 ACCTGGTTGCATTCGAGAGTTAT 60.055 43.478 0.00 0.00 0.00 1.89
4817 5729 3.557595 CCTGGTTGCATTCGAGAGTTATC 59.442 47.826 0.00 0.00 0.00 1.75
4818 5730 4.437239 CTGGTTGCATTCGAGAGTTATCT 58.563 43.478 0.00 0.00 38.98 1.98
4830 5742 4.414337 AGAGTTATCTCAATGTCCAGGC 57.586 45.455 3.70 0.00 42.66 4.85
4831 5743 3.135530 AGAGTTATCTCAATGTCCAGGCC 59.864 47.826 0.00 0.00 42.66 5.19
4832 5744 2.173569 AGTTATCTCAATGTCCAGGCCC 59.826 50.000 0.00 0.00 0.00 5.80
4833 5745 1.140312 TATCTCAATGTCCAGGCCCC 58.860 55.000 0.00 0.00 0.00 5.80
4834 5746 1.649271 ATCTCAATGTCCAGGCCCCC 61.649 60.000 0.00 0.00 0.00 5.40
4835 5747 2.204291 TCAATGTCCAGGCCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
4836 5748 2.276309 CTCAATGTCCAGGCCCCCTC 62.276 65.000 0.00 0.00 0.00 4.30
4837 5749 3.411517 AATGTCCAGGCCCCCTCG 61.412 66.667 0.00 0.00 0.00 4.63
4838 5750 4.741239 ATGTCCAGGCCCCCTCGT 62.741 66.667 0.00 0.00 0.00 4.18
4846 5758 4.722700 GCCCCCTCGTGTGCATGT 62.723 66.667 0.00 0.00 0.00 3.21
4847 5759 2.034066 CCCCCTCGTGTGCATGTT 59.966 61.111 0.00 0.00 0.00 2.71
4848 5760 1.603455 CCCCCTCGTGTGCATGTTT 60.603 57.895 0.00 0.00 0.00 2.83
4849 5761 1.178534 CCCCCTCGTGTGCATGTTTT 61.179 55.000 0.00 0.00 0.00 2.43
4850 5762 1.529226 CCCCTCGTGTGCATGTTTTA 58.471 50.000 0.00 0.00 0.00 1.52
4851 5763 1.468520 CCCCTCGTGTGCATGTTTTAG 59.531 52.381 0.00 0.00 0.00 1.85
4852 5764 2.151202 CCCTCGTGTGCATGTTTTAGT 58.849 47.619 0.00 0.00 0.00 2.24
4853 5765 2.552315 CCCTCGTGTGCATGTTTTAGTT 59.448 45.455 0.00 0.00 0.00 2.24
4854 5766 3.364964 CCCTCGTGTGCATGTTTTAGTTC 60.365 47.826 0.00 0.00 0.00 3.01
4855 5767 3.364964 CCTCGTGTGCATGTTTTAGTTCC 60.365 47.826 0.00 0.00 0.00 3.62
4856 5768 2.550606 TCGTGTGCATGTTTTAGTTCCC 59.449 45.455 0.00 0.00 0.00 3.97
4857 5769 2.351350 CGTGTGCATGTTTTAGTTCCCC 60.351 50.000 0.00 0.00 0.00 4.81
4858 5770 2.029380 GTGTGCATGTTTTAGTTCCCCC 60.029 50.000 0.00 0.00 0.00 5.40
4859 5771 2.243810 GTGCATGTTTTAGTTCCCCCA 58.756 47.619 0.00 0.00 0.00 4.96
4860 5772 2.029380 GTGCATGTTTTAGTTCCCCCAC 60.029 50.000 0.00 0.00 0.00 4.61
4861 5773 2.158385 TGCATGTTTTAGTTCCCCCACT 60.158 45.455 0.00 0.00 0.00 4.00
4862 5774 2.231235 GCATGTTTTAGTTCCCCCACTG 59.769 50.000 0.00 0.00 0.00 3.66
4863 5775 1.989706 TGTTTTAGTTCCCCCACTGC 58.010 50.000 0.00 0.00 0.00 4.40
4864 5776 1.497286 TGTTTTAGTTCCCCCACTGCT 59.503 47.619 0.00 0.00 0.00 4.24
4865 5777 2.160205 GTTTTAGTTCCCCCACTGCTC 58.840 52.381 0.00 0.00 0.00 4.26
4866 5778 1.742308 TTTAGTTCCCCCACTGCTCT 58.258 50.000 0.00 0.00 0.00 4.09
4867 5779 1.742308 TTAGTTCCCCCACTGCTCTT 58.258 50.000 0.00 0.00 0.00 2.85
4868 5780 0.984230 TAGTTCCCCCACTGCTCTTG 59.016 55.000 0.00 0.00 0.00 3.02
4869 5781 0.768221 AGTTCCCCCACTGCTCTTGA 60.768 55.000 0.00 0.00 0.00 3.02
4870 5782 0.110486 GTTCCCCCACTGCTCTTGAA 59.890 55.000 0.00 0.00 0.00 2.69
4871 5783 0.110486 TTCCCCCACTGCTCTTGAAC 59.890 55.000 0.00 0.00 0.00 3.18
4872 5784 1.059584 TCCCCCACTGCTCTTGAACA 61.060 55.000 0.00 0.00 0.00 3.18
4873 5785 0.178992 CCCCCACTGCTCTTGAACAA 60.179 55.000 0.00 0.00 0.00 2.83
4874 5786 1.242076 CCCCACTGCTCTTGAACAAG 58.758 55.000 8.09 8.09 39.71 3.16
4875 5787 1.477558 CCCCACTGCTCTTGAACAAGT 60.478 52.381 13.15 0.00 39.38 3.16
4876 5788 2.224523 CCCCACTGCTCTTGAACAAGTA 60.225 50.000 13.15 1.80 39.38 2.24
4877 5789 3.476552 CCCACTGCTCTTGAACAAGTAA 58.523 45.455 13.15 1.85 39.38 2.24
4878 5790 3.499918 CCCACTGCTCTTGAACAAGTAAG 59.500 47.826 13.15 11.33 39.38 2.34
4879 5791 3.499918 CCACTGCTCTTGAACAAGTAAGG 59.500 47.826 13.15 5.92 39.38 2.69
4880 5792 3.499918 CACTGCTCTTGAACAAGTAAGGG 59.500 47.826 13.15 7.70 39.38 3.95
4881 5793 3.136626 ACTGCTCTTGAACAAGTAAGGGT 59.863 43.478 13.15 6.02 39.38 4.34
4882 5794 4.137543 CTGCTCTTGAACAAGTAAGGGTT 58.862 43.478 13.15 0.00 39.38 4.11
4883 5795 4.134563 TGCTCTTGAACAAGTAAGGGTTC 58.865 43.478 13.15 0.00 42.82 3.62
4884 5796 3.502595 GCTCTTGAACAAGTAAGGGTTCC 59.497 47.826 13.15 0.00 42.04 3.62
4885 5797 4.714632 CTCTTGAACAAGTAAGGGTTCCA 58.285 43.478 13.15 0.00 42.04 3.53
4886 5798 4.714632 TCTTGAACAAGTAAGGGTTCCAG 58.285 43.478 13.15 0.00 42.04 3.86
4887 5799 4.410883 TCTTGAACAAGTAAGGGTTCCAGA 59.589 41.667 13.15 0.00 41.01 3.86
4888 5800 4.781775 TGAACAAGTAAGGGTTCCAGAA 57.218 40.909 0.00 0.00 42.04 3.02
4889 5801 5.118729 TGAACAAGTAAGGGTTCCAGAAA 57.881 39.130 0.00 0.00 42.04 2.52
4890 5802 5.701224 TGAACAAGTAAGGGTTCCAGAAAT 58.299 37.500 0.00 0.00 42.04 2.17
4891 5803 6.843752 TGAACAAGTAAGGGTTCCAGAAATA 58.156 36.000 0.00 0.00 42.04 1.40
4892 5804 6.713450 TGAACAAGTAAGGGTTCCAGAAATAC 59.287 38.462 0.00 0.00 42.04 1.89
4893 5805 5.567430 ACAAGTAAGGGTTCCAGAAATACC 58.433 41.667 0.00 0.00 0.00 2.73
4894 5806 5.073965 ACAAGTAAGGGTTCCAGAAATACCA 59.926 40.000 0.00 0.00 33.51 3.25
4895 5807 5.437191 AGTAAGGGTTCCAGAAATACCAG 57.563 43.478 0.00 0.00 33.51 4.00
4896 5808 2.808906 AGGGTTCCAGAAATACCAGC 57.191 50.000 0.00 0.00 33.51 4.85
4897 5809 2.279173 AGGGTTCCAGAAATACCAGCT 58.721 47.619 0.00 0.00 33.51 4.24
4898 5810 2.649816 AGGGTTCCAGAAATACCAGCTT 59.350 45.455 0.00 0.00 33.51 3.74
4899 5811 2.755103 GGGTTCCAGAAATACCAGCTTG 59.245 50.000 0.00 0.00 33.51 4.01
4900 5812 3.421844 GGTTCCAGAAATACCAGCTTGT 58.578 45.455 0.00 0.00 32.12 3.16
4901 5813 3.826729 GGTTCCAGAAATACCAGCTTGTT 59.173 43.478 0.00 0.00 32.12 2.83
4902 5814 4.321230 GGTTCCAGAAATACCAGCTTGTTG 60.321 45.833 0.00 0.00 32.12 3.33
4903 5815 2.819608 TCCAGAAATACCAGCTTGTTGC 59.180 45.455 0.00 0.00 43.29 4.17
4919 5831 6.956047 GCTTGTTGCTAGTTTGTAACTTACT 58.044 36.000 0.00 0.00 42.81 2.24
4920 5832 8.080083 GCTTGTTGCTAGTTTGTAACTTACTA 57.920 34.615 0.00 0.00 42.81 1.82
4921 5833 8.553696 GCTTGTTGCTAGTTTGTAACTTACTAA 58.446 33.333 0.00 0.00 42.81 2.24
4922 5834 9.859692 CTTGTTGCTAGTTTGTAACTTACTAAC 57.140 33.333 14.74 14.74 42.81 2.34
4932 5844 9.494479 GTTTGTAACTTACTAACTTGTCCAAAC 57.506 33.333 15.09 0.00 39.93 2.93
4933 5845 7.790823 TGTAACTTACTAACTTGTCCAAACC 57.209 36.000 0.71 0.00 0.00 3.27
4934 5846 5.996669 AACTTACTAACTTGTCCAAACCG 57.003 39.130 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 80 1.363807 GTGCTCCCACCAGTTTTGC 59.636 57.895 0.00 0.00 35.92 3.68
396 411 4.740934 GCTTGTTCTCCAGCTCGGTATAAT 60.741 45.833 2.68 0.00 35.57 1.28
541 557 3.066621 TGCAAAGTTACAGCAAGGTCAAG 59.933 43.478 0.00 0.00 34.97 3.02
558 576 0.106268 TCCTTCACCTTGCCTGCAAA 60.106 50.000 6.00 0.00 35.33 3.68
670 732 3.484886 CGCAAGAGCAGCTTTCAGATTAC 60.485 47.826 0.00 0.00 42.27 1.89
945 1009 1.528309 CAGGTTTGGTTCCAGCCGT 60.528 57.895 8.19 0.00 0.00 5.68
978 1042 0.165944 CAACTTCATCGTTCACCGGC 59.834 55.000 0.00 0.00 37.11 6.13
1030 1094 1.174783 AGATAGTCAACGACAGCGGT 58.825 50.000 0.00 0.00 43.17 5.68
1032 1096 1.321743 GCAAGATAGTCAACGACAGCG 59.678 52.381 0.00 0.00 44.79 5.18
1059 1123 1.668151 GCGAGAAGTGGCGACCTTT 60.668 57.895 0.00 0.00 0.00 3.11
1110 1174 1.748493 AGAGACTCGAGGTCATTCTGC 59.252 52.381 18.41 4.72 46.72 4.26
1198 1262 3.681034 GCCAGACATAGAGCAACATCTGT 60.681 47.826 0.00 0.00 33.28 3.41
1537 1603 3.784701 TCAAGCCAAAAACAAGCGTAA 57.215 38.095 0.00 0.00 0.00 3.18
1686 1759 0.950555 CAGTGCTTGCCTAAGTCGCA 60.951 55.000 0.00 0.00 36.27 5.10
1687 1760 1.639298 CCAGTGCTTGCCTAAGTCGC 61.639 60.000 0.00 0.00 36.27 5.19
1740 1813 2.568623 AAAAATCCTGCCGAGTGAGT 57.431 45.000 0.00 0.00 0.00 3.41
1750 1823 6.289064 ACTCGCCTAAGGTATAAAAATCCTG 58.711 40.000 0.00 0.00 0.00 3.86
1774 1849 1.221840 GCTTAGCTGCAGCCCAGTA 59.778 57.895 34.39 17.83 43.71 2.74
1940 2165 4.459089 GCAGACCTCCCACTCGGC 62.459 72.222 0.00 0.00 0.00 5.54
2164 2470 0.392729 AGGACGAGGTACAGGTCGAG 60.393 60.000 15.82 0.00 39.53 4.04
2426 2952 0.666274 TGCAGTCTAAACACTCGCCG 60.666 55.000 0.00 0.00 0.00 6.46
2533 3135 1.484444 GGTGAGCCAGACTCCCACTT 61.484 60.000 0.00 0.00 45.61 3.16
2674 3428 3.376082 TCCAACTCGGAGGCTTAGT 57.624 52.632 10.23 0.00 39.64 2.24
2753 3584 1.273324 CCAGACTCCCACTAGGAAGGT 60.273 57.143 0.00 0.00 46.94 3.50
2760 3591 1.007118 TGATGAGCCAGACTCCCACTA 59.993 52.381 0.00 0.00 45.61 2.74
2963 3810 2.354821 GCTCCGCCCATTTTACACTTAG 59.645 50.000 0.00 0.00 0.00 2.18
3144 3994 1.261238 AAGAGTCGAGCCTTCCAGGG 61.261 60.000 0.00 0.00 35.37 4.45
3207 4057 1.476085 GATGGCTCTGATCCGATCGAT 59.524 52.381 18.66 8.25 0.00 3.59
3622 4472 1.606025 AATGCCGACATGGTTGCCA 60.606 52.632 0.00 0.00 41.21 4.92
3690 4540 2.231478 GACCCACTTGAGAGAACGATGA 59.769 50.000 0.00 0.00 0.00 2.92
3697 4547 2.894731 ACATCAGACCCACTTGAGAGA 58.105 47.619 0.00 0.00 0.00 3.10
3865 4715 0.257328 TGAAGTTGCCAGTGGAACCA 59.743 50.000 15.20 0.00 37.80 3.67
3962 4813 1.771255 AGCTCCATCTCCCGCTAATTT 59.229 47.619 0.00 0.00 0.00 1.82
3987 4838 0.038892 GTGAAGAGCAACCCGACGTA 60.039 55.000 0.00 0.00 0.00 3.57
4060 4911 3.662759 TCCACAATAATCACCTTCCCC 57.337 47.619 0.00 0.00 0.00 4.81
4066 4919 7.390718 AGAGTACAACTTTCCACAATAATCACC 59.609 37.037 0.00 0.00 0.00 4.02
4071 4924 9.787435 ATACAAGAGTACAACTTTCCACAATAA 57.213 29.630 0.00 0.00 31.96 1.40
4091 4944 6.479990 TGAACACTCAACACTCTCAATACAAG 59.520 38.462 0.00 0.00 0.00 3.16
4122 4975 3.619929 ACGTACAACTTCACAAGAACACC 59.380 43.478 0.00 0.00 0.00 4.16
4127 4980 6.201425 GGAATGTAACGTACAACTTCACAAGA 59.799 38.462 0.00 0.00 42.76 3.02
4235 5088 9.288124 CATGCGAAGAAATCATAAAACAACATA 57.712 29.630 0.00 0.00 0.00 2.29
4243 5096 5.296780 GGAGGACATGCGAAGAAATCATAAA 59.703 40.000 0.00 0.00 0.00 1.40
4256 5109 1.813513 AGACAAAAGGAGGACATGCG 58.186 50.000 0.00 0.00 0.00 4.73
4266 5119 1.068541 GCGGGCTAACAAGACAAAAGG 60.069 52.381 0.00 0.00 0.00 3.11
4267 5120 1.880027 AGCGGGCTAACAAGACAAAAG 59.120 47.619 0.00 0.00 0.00 2.27
4277 5133 6.856135 ATTTAAAGTGTATAGCGGGCTAAC 57.144 37.500 4.26 5.50 31.73 2.34
4297 5159 7.458397 TCTGACAGTCCTGTTTTGGTATATTT 58.542 34.615 1.59 0.00 45.05 1.40
4414 5305 6.020121 CAGGATGTTTCATCGCAATTGAATTC 60.020 38.462 10.34 0.00 33.37 2.17
4526 5426 6.097412 CCCTTCATTTCTTCCAGAATAAAGGG 59.903 42.308 17.87 17.87 43.41 3.95
4529 5429 8.367156 CAAACCCTTCATTTCTTCCAGAATAAA 58.633 33.333 0.00 0.00 33.67 1.40
4580 5492 0.100146 GGACAGGTCGGTAAGCTACG 59.900 60.000 0.00 0.00 33.36 3.51
4613 5525 2.275318 CTTCGCTCATTCCTGAAGACC 58.725 52.381 0.00 0.00 40.12 3.85
4617 5529 2.027745 AGAAGCTTCGCTCATTCCTGAA 60.028 45.455 20.43 0.00 38.25 3.02
4620 5532 1.552337 TCAGAAGCTTCGCTCATTCCT 59.448 47.619 20.43 0.00 38.25 3.36
4622 5534 2.341257 TGTCAGAAGCTTCGCTCATTC 58.659 47.619 20.43 8.81 38.25 2.67
4642 5554 6.299141 TGAAAAGCTTCAGAATTCAGGTACT 58.701 36.000 8.44 0.00 36.62 2.73
4667 5579 1.154197 GCGTGGGAGGAACTACAAAC 58.846 55.000 0.00 0.00 44.82 2.93
4668 5580 0.035739 GGCGTGGGAGGAACTACAAA 59.964 55.000 0.00 0.00 44.82 2.83
4669 5581 1.675219 GGCGTGGGAGGAACTACAA 59.325 57.895 0.00 0.00 44.82 2.41
4670 5582 2.288025 GGGCGTGGGAGGAACTACA 61.288 63.158 0.00 0.00 44.82 2.74
4671 5583 2.582978 GGGCGTGGGAGGAACTAC 59.417 66.667 0.00 0.00 41.55 2.73
4672 5584 3.072468 CGGGCGTGGGAGGAACTA 61.072 66.667 0.00 0.00 41.55 2.24
4678 5590 4.697756 TTGAAGCGGGCGTGGGAG 62.698 66.667 0.00 0.00 0.00 4.30
4679 5591 3.561120 ATTTGAAGCGGGCGTGGGA 62.561 57.895 0.00 0.00 0.00 4.37
4680 5592 3.061848 ATTTGAAGCGGGCGTGGG 61.062 61.111 0.00 0.00 0.00 4.61
4681 5593 2.179018 CATTTGAAGCGGGCGTGG 59.821 61.111 0.00 0.00 0.00 4.94
4682 5594 1.135315 CTCATTTGAAGCGGGCGTG 59.865 57.895 0.00 0.00 0.00 5.34
4683 5595 0.036765 TACTCATTTGAAGCGGGCGT 60.037 50.000 0.00 0.00 0.00 5.68
4684 5596 0.652592 CTACTCATTTGAAGCGGGCG 59.347 55.000 0.00 0.00 0.00 6.13
4685 5597 1.398390 CACTACTCATTTGAAGCGGGC 59.602 52.381 0.00 0.00 0.00 6.13
4686 5598 1.398390 GCACTACTCATTTGAAGCGGG 59.602 52.381 0.00 0.00 0.00 6.13
4687 5599 2.094894 CAGCACTACTCATTTGAAGCGG 59.905 50.000 0.00 0.00 0.00 5.52
4688 5600 2.995939 TCAGCACTACTCATTTGAAGCG 59.004 45.455 0.00 0.00 0.00 4.68
4689 5601 3.181512 GCTCAGCACTACTCATTTGAAGC 60.182 47.826 0.00 0.00 0.00 3.86
4690 5602 3.373439 GGCTCAGCACTACTCATTTGAAG 59.627 47.826 0.00 0.00 0.00 3.02
4691 5603 3.008375 AGGCTCAGCACTACTCATTTGAA 59.992 43.478 0.00 0.00 0.00 2.69
4692 5604 2.568956 AGGCTCAGCACTACTCATTTGA 59.431 45.455 0.00 0.00 0.00 2.69
4693 5605 2.935201 GAGGCTCAGCACTACTCATTTG 59.065 50.000 10.25 0.00 0.00 2.32
4694 5606 2.568956 TGAGGCTCAGCACTACTCATTT 59.431 45.455 14.43 0.00 33.62 2.32
4695 5607 2.093764 GTGAGGCTCAGCACTACTCATT 60.094 50.000 19.38 0.00 39.97 2.57
4696 5608 1.480137 GTGAGGCTCAGCACTACTCAT 59.520 52.381 19.38 0.00 39.97 2.90
4697 5609 0.891373 GTGAGGCTCAGCACTACTCA 59.109 55.000 19.38 0.00 35.97 3.41
4698 5610 1.135141 CAGTGAGGCTCAGCACTACTC 60.135 57.143 19.38 3.20 43.06 2.59
4699 5611 0.894141 CAGTGAGGCTCAGCACTACT 59.106 55.000 19.38 7.38 43.06 2.57
4700 5612 0.605589 ACAGTGAGGCTCAGCACTAC 59.394 55.000 19.38 4.82 43.06 2.73
4701 5613 0.891373 GACAGTGAGGCTCAGCACTA 59.109 55.000 19.38 0.00 43.06 2.74
4702 5614 1.670590 GACAGTGAGGCTCAGCACT 59.329 57.895 19.38 9.64 45.62 4.40
4703 5615 1.735920 CGACAGTGAGGCTCAGCAC 60.736 63.158 19.38 7.12 35.30 4.40
4704 5616 1.903404 TCGACAGTGAGGCTCAGCA 60.903 57.895 19.38 0.00 0.00 4.41
4705 5617 1.445238 GTCGACAGTGAGGCTCAGC 60.445 63.158 19.38 12.82 0.00 4.26
4706 5618 1.154131 CGTCGACAGTGAGGCTCAG 60.154 63.158 19.38 9.98 0.00 3.35
4707 5619 2.954611 CGTCGACAGTGAGGCTCA 59.045 61.111 14.43 14.43 0.00 4.26
4708 5620 2.505118 GCGTCGACAGTGAGGCTC 60.505 66.667 17.16 7.79 44.20 4.70
4709 5621 4.057428 GGCGTCGACAGTGAGGCT 62.057 66.667 17.16 0.00 46.18 4.58
4711 5623 3.633094 CTGGGCGTCGACAGTGAGG 62.633 68.421 17.16 0.00 0.00 3.86
4712 5624 2.126307 CTGGGCGTCGACAGTGAG 60.126 66.667 17.16 1.82 0.00 3.51
4713 5625 2.596338 TCTGGGCGTCGACAGTGA 60.596 61.111 17.16 3.16 36.17 3.41
4714 5626 2.430921 GTCTGGGCGTCGACAGTG 60.431 66.667 17.16 0.00 36.17 3.66
4715 5627 2.597805 AGTCTGGGCGTCGACAGT 60.598 61.111 17.16 0.00 36.17 3.55
4716 5628 2.126307 CAGTCTGGGCGTCGACAG 60.126 66.667 17.16 9.59 36.07 3.51
4717 5629 4.357947 GCAGTCTGGGCGTCGACA 62.358 66.667 17.16 0.00 32.68 4.35
4718 5630 2.600122 CTAGCAGTCTGGGCGTCGAC 62.600 65.000 5.18 5.18 36.08 4.20
4719 5631 2.360726 TAGCAGTCTGGGCGTCGA 60.361 61.111 1.14 0.00 36.08 4.20
4720 5632 2.103143 CTAGCAGTCTGGGCGTCG 59.897 66.667 1.14 0.00 36.08 5.12
4721 5633 2.202810 GCTAGCAGTCTGGGCGTC 60.203 66.667 10.63 0.00 36.08 5.19
4722 5634 3.775654 GGCTAGCAGTCTGGGCGT 61.776 66.667 18.24 0.00 36.69 5.68
4724 5636 2.124942 GTGGCTAGCAGTCTGGGC 60.125 66.667 18.24 0.00 44.82 5.36
4725 5637 1.078848 GTGTGGCTAGCAGTCTGGG 60.079 63.158 18.24 0.00 0.00 4.45
4726 5638 1.078848 GGTGTGGCTAGCAGTCTGG 60.079 63.158 18.24 0.00 0.00 3.86
4727 5639 0.108424 GAGGTGTGGCTAGCAGTCTG 60.108 60.000 18.24 0.00 0.00 3.51
4728 5640 1.261238 GGAGGTGTGGCTAGCAGTCT 61.261 60.000 18.24 6.05 0.00 3.24
4729 5641 1.219393 GGAGGTGTGGCTAGCAGTC 59.781 63.158 18.24 6.57 0.00 3.51
4730 5642 1.536418 TGGAGGTGTGGCTAGCAGT 60.536 57.895 18.24 0.00 0.00 4.40
4731 5643 1.078848 GTGGAGGTGTGGCTAGCAG 60.079 63.158 18.24 0.00 0.00 4.24
4732 5644 1.830587 CTGTGGAGGTGTGGCTAGCA 61.831 60.000 18.24 0.00 0.00 3.49
4733 5645 1.078848 CTGTGGAGGTGTGGCTAGC 60.079 63.158 6.04 6.04 0.00 3.42
4734 5646 1.078848 GCTGTGGAGGTGTGGCTAG 60.079 63.158 0.00 0.00 0.00 3.42
4735 5647 2.592993 GGCTGTGGAGGTGTGGCTA 61.593 63.158 0.00 0.00 0.00 3.93
4736 5648 3.958860 GGCTGTGGAGGTGTGGCT 61.959 66.667 0.00 0.00 0.00 4.75
4737 5649 4.269523 TGGCTGTGGAGGTGTGGC 62.270 66.667 0.00 0.00 0.00 5.01
4738 5650 2.281761 GTGGCTGTGGAGGTGTGG 60.282 66.667 0.00 0.00 0.00 4.17
4739 5651 0.538057 ATTGTGGCTGTGGAGGTGTG 60.538 55.000 0.00 0.00 0.00 3.82
4740 5652 1.064003 TATTGTGGCTGTGGAGGTGT 58.936 50.000 0.00 0.00 0.00 4.16
4741 5653 1.271325 TGTATTGTGGCTGTGGAGGTG 60.271 52.381 0.00 0.00 0.00 4.00
4742 5654 1.064003 TGTATTGTGGCTGTGGAGGT 58.936 50.000 0.00 0.00 0.00 3.85
4743 5655 1.812571 GTTGTATTGTGGCTGTGGAGG 59.187 52.381 0.00 0.00 0.00 4.30
4744 5656 1.812571 GGTTGTATTGTGGCTGTGGAG 59.187 52.381 0.00 0.00 0.00 3.86
4745 5657 1.143889 TGGTTGTATTGTGGCTGTGGA 59.856 47.619 0.00 0.00 0.00 4.02
4746 5658 1.614996 TGGTTGTATTGTGGCTGTGG 58.385 50.000 0.00 0.00 0.00 4.17
4747 5659 2.360483 TGTTGGTTGTATTGTGGCTGTG 59.640 45.455 0.00 0.00 0.00 3.66
4748 5660 2.660572 TGTTGGTTGTATTGTGGCTGT 58.339 42.857 0.00 0.00 0.00 4.40
4749 5661 3.507233 AGATGTTGGTTGTATTGTGGCTG 59.493 43.478 0.00 0.00 0.00 4.85
4750 5662 3.766545 AGATGTTGGTTGTATTGTGGCT 58.233 40.909 0.00 0.00 0.00 4.75
4751 5663 4.022416 TGAAGATGTTGGTTGTATTGTGGC 60.022 41.667 0.00 0.00 0.00 5.01
4752 5664 5.703978 TGAAGATGTTGGTTGTATTGTGG 57.296 39.130 0.00 0.00 0.00 4.17
4753 5665 8.084073 AGAATTGAAGATGTTGGTTGTATTGTG 58.916 33.333 0.00 0.00 0.00 3.33
4754 5666 8.181904 AGAATTGAAGATGTTGGTTGTATTGT 57.818 30.769 0.00 0.00 0.00 2.71
4773 5685 9.793252 CCAGGTGTTTTGAAGATATAAGAATTG 57.207 33.333 0.00 0.00 0.00 2.32
4774 5686 9.533831 ACCAGGTGTTTTGAAGATATAAGAATT 57.466 29.630 0.00 0.00 0.00 2.17
4775 5687 9.533831 AACCAGGTGTTTTGAAGATATAAGAAT 57.466 29.630 0.00 0.00 31.47 2.40
4776 5688 8.792633 CAACCAGGTGTTTTGAAGATATAAGAA 58.207 33.333 0.00 0.00 34.00 2.52
4777 5689 7.094377 GCAACCAGGTGTTTTGAAGATATAAGA 60.094 37.037 0.00 0.00 34.00 2.10
4778 5690 7.029563 GCAACCAGGTGTTTTGAAGATATAAG 58.970 38.462 0.00 0.00 34.00 1.73
4779 5691 6.491745 TGCAACCAGGTGTTTTGAAGATATAA 59.508 34.615 0.00 0.00 34.00 0.98
4780 5692 6.007076 TGCAACCAGGTGTTTTGAAGATATA 58.993 36.000 0.00 0.00 34.00 0.86
4781 5693 4.832266 TGCAACCAGGTGTTTTGAAGATAT 59.168 37.500 0.00 0.00 34.00 1.63
4782 5694 4.211125 TGCAACCAGGTGTTTTGAAGATA 58.789 39.130 0.00 0.00 34.00 1.98
4783 5695 3.030291 TGCAACCAGGTGTTTTGAAGAT 58.970 40.909 0.00 0.00 34.00 2.40
4784 5696 2.451490 TGCAACCAGGTGTTTTGAAGA 58.549 42.857 0.00 0.00 34.00 2.87
4785 5697 2.957491 TGCAACCAGGTGTTTTGAAG 57.043 45.000 0.00 0.00 34.00 3.02
4786 5698 3.736433 CGAATGCAACCAGGTGTTTTGAA 60.736 43.478 0.00 0.00 34.00 2.69
4787 5699 2.223688 CGAATGCAACCAGGTGTTTTGA 60.224 45.455 0.00 0.00 34.00 2.69
4788 5700 2.126467 CGAATGCAACCAGGTGTTTTG 58.874 47.619 0.00 0.00 34.00 2.44
4789 5701 2.028130 TCGAATGCAACCAGGTGTTTT 58.972 42.857 0.00 0.00 34.00 2.43
4790 5702 1.608590 CTCGAATGCAACCAGGTGTTT 59.391 47.619 0.00 0.00 34.00 2.83
4791 5703 1.202758 TCTCGAATGCAACCAGGTGTT 60.203 47.619 0.00 0.00 37.80 3.32
4792 5704 0.396435 TCTCGAATGCAACCAGGTGT 59.604 50.000 0.00 0.00 0.00 4.16
4793 5705 1.081892 CTCTCGAATGCAACCAGGTG 58.918 55.000 0.00 0.00 0.00 4.00
4794 5706 0.687354 ACTCTCGAATGCAACCAGGT 59.313 50.000 0.00 0.00 0.00 4.00
4795 5707 1.813513 AACTCTCGAATGCAACCAGG 58.186 50.000 0.00 0.00 0.00 4.45
4796 5708 4.437239 AGATAACTCTCGAATGCAACCAG 58.563 43.478 0.00 0.00 0.00 4.00
4797 5709 4.433615 GAGATAACTCTCGAATGCAACCA 58.566 43.478 0.00 0.00 38.70 3.67
4808 5720 4.376146 GCCTGGACATTGAGATAACTCTC 58.624 47.826 0.00 0.00 46.89 3.20
4809 5721 3.135530 GGCCTGGACATTGAGATAACTCT 59.864 47.826 0.00 0.00 42.99 3.24
4810 5722 3.471680 GGCCTGGACATTGAGATAACTC 58.528 50.000 0.00 0.00 42.88 3.01
4811 5723 2.173569 GGGCCTGGACATTGAGATAACT 59.826 50.000 0.00 0.00 0.00 2.24
4812 5724 2.576615 GGGCCTGGACATTGAGATAAC 58.423 52.381 0.00 0.00 0.00 1.89
4813 5725 1.494721 GGGGCCTGGACATTGAGATAA 59.505 52.381 0.00 0.00 0.00 1.75
4814 5726 1.140312 GGGGCCTGGACATTGAGATA 58.860 55.000 0.00 0.00 0.00 1.98
4815 5727 1.649271 GGGGGCCTGGACATTGAGAT 61.649 60.000 0.00 0.00 0.00 2.75
4816 5728 2.308722 GGGGGCCTGGACATTGAGA 61.309 63.158 0.00 0.00 0.00 3.27
4817 5729 2.276309 GAGGGGGCCTGGACATTGAG 62.276 65.000 0.00 0.00 31.76 3.02
4818 5730 2.204291 AGGGGGCCTGGACATTGA 60.204 61.111 0.00 0.00 29.57 2.57
4819 5731 2.276740 GAGGGGGCCTGGACATTG 59.723 66.667 0.00 0.00 31.76 2.82
4820 5732 3.411517 CGAGGGGGCCTGGACATT 61.412 66.667 0.00 0.00 31.76 2.71
4821 5733 4.741239 ACGAGGGGGCCTGGACAT 62.741 66.667 0.00 0.00 33.49 3.06
4829 5741 4.722700 ACATGCACACGAGGGGGC 62.723 66.667 0.00 0.00 0.00 5.80
4830 5742 1.178534 AAAACATGCACACGAGGGGG 61.179 55.000 0.00 0.00 0.00 5.40
4831 5743 1.468520 CTAAAACATGCACACGAGGGG 59.531 52.381 0.00 0.00 0.00 4.79
4832 5744 2.151202 ACTAAAACATGCACACGAGGG 58.849 47.619 0.00 0.00 0.00 4.30
4833 5745 3.364964 GGAACTAAAACATGCACACGAGG 60.365 47.826 0.00 0.00 0.00 4.63
4834 5746 3.364964 GGGAACTAAAACATGCACACGAG 60.365 47.826 0.00 0.00 0.00 4.18
4835 5747 2.550606 GGGAACTAAAACATGCACACGA 59.449 45.455 0.00 0.00 0.00 4.35
4836 5748 2.351350 GGGGAACTAAAACATGCACACG 60.351 50.000 0.00 0.00 0.00 4.49
4837 5749 2.029380 GGGGGAACTAAAACATGCACAC 60.029 50.000 0.00 0.00 0.00 3.82
4838 5750 2.243810 GGGGGAACTAAAACATGCACA 58.756 47.619 0.00 0.00 0.00 4.57
4839 5751 2.029380 GTGGGGGAACTAAAACATGCAC 60.029 50.000 0.00 0.00 0.00 4.57
4840 5752 2.158385 AGTGGGGGAACTAAAACATGCA 60.158 45.455 0.00 0.00 0.00 3.96
4841 5753 2.231235 CAGTGGGGGAACTAAAACATGC 59.769 50.000 0.00 0.00 0.00 4.06
4842 5754 2.231235 GCAGTGGGGGAACTAAAACATG 59.769 50.000 0.00 0.00 0.00 3.21
4843 5755 2.110011 AGCAGTGGGGGAACTAAAACAT 59.890 45.455 0.00 0.00 0.00 2.71
4844 5756 1.497286 AGCAGTGGGGGAACTAAAACA 59.503 47.619 0.00 0.00 0.00 2.83
4845 5757 2.160205 GAGCAGTGGGGGAACTAAAAC 58.840 52.381 0.00 0.00 0.00 2.43
4846 5758 2.062636 AGAGCAGTGGGGGAACTAAAA 58.937 47.619 0.00 0.00 0.00 1.52
4847 5759 1.742308 AGAGCAGTGGGGGAACTAAA 58.258 50.000 0.00 0.00 0.00 1.85
4848 5760 1.351017 CAAGAGCAGTGGGGGAACTAA 59.649 52.381 0.00 0.00 0.00 2.24
4849 5761 0.984230 CAAGAGCAGTGGGGGAACTA 59.016 55.000 0.00 0.00 0.00 2.24
4850 5762 0.768221 TCAAGAGCAGTGGGGGAACT 60.768 55.000 0.00 0.00 0.00 3.01
4851 5763 0.110486 TTCAAGAGCAGTGGGGGAAC 59.890 55.000 0.00 0.00 0.00 3.62
4852 5764 0.110486 GTTCAAGAGCAGTGGGGGAA 59.890 55.000 0.00 0.00 0.00 3.97
4853 5765 1.059584 TGTTCAAGAGCAGTGGGGGA 61.060 55.000 0.00 0.00 0.00 4.81
4854 5766 0.178992 TTGTTCAAGAGCAGTGGGGG 60.179 55.000 0.00 0.00 0.00 5.40
4855 5767 1.242076 CTTGTTCAAGAGCAGTGGGG 58.758 55.000 6.71 0.00 0.00 4.96
4856 5768 1.972872 ACTTGTTCAAGAGCAGTGGG 58.027 50.000 17.75 0.00 0.00 4.61
4857 5769 3.499918 CCTTACTTGTTCAAGAGCAGTGG 59.500 47.826 17.75 7.93 0.00 4.00
4858 5770 3.499918 CCCTTACTTGTTCAAGAGCAGTG 59.500 47.826 17.75 0.00 0.00 3.66
4859 5771 3.136626 ACCCTTACTTGTTCAAGAGCAGT 59.863 43.478 17.75 6.80 0.00 4.40
4860 5772 3.744660 ACCCTTACTTGTTCAAGAGCAG 58.255 45.455 17.75 10.14 0.00 4.24
4861 5773 3.857157 ACCCTTACTTGTTCAAGAGCA 57.143 42.857 17.75 1.92 0.00 4.26
4862 5774 3.502595 GGAACCCTTACTTGTTCAAGAGC 59.497 47.826 17.75 0.00 42.04 4.09
4863 5775 4.714632 TGGAACCCTTACTTGTTCAAGAG 58.285 43.478 17.75 6.86 42.04 2.85
4864 5776 4.410883 TCTGGAACCCTTACTTGTTCAAGA 59.589 41.667 17.75 5.57 45.06 3.02
4865 5777 4.714632 TCTGGAACCCTTACTTGTTCAAG 58.285 43.478 10.50 10.50 41.78 3.02
4866 5778 4.781775 TCTGGAACCCTTACTTGTTCAA 57.218 40.909 0.00 0.00 42.04 2.69
4867 5779 4.781775 TTCTGGAACCCTTACTTGTTCA 57.218 40.909 0.00 0.00 42.04 3.18
4868 5780 6.150641 GGTATTTCTGGAACCCTTACTTGTTC 59.849 42.308 0.00 0.00 40.06 3.18
4869 5781 6.008331 GGTATTTCTGGAACCCTTACTTGTT 58.992 40.000 0.00 0.00 0.00 2.83
4870 5782 5.073965 TGGTATTTCTGGAACCCTTACTTGT 59.926 40.000 0.00 0.00 31.97 3.16
4871 5783 5.566469 TGGTATTTCTGGAACCCTTACTTG 58.434 41.667 0.00 0.00 31.97 3.16
4872 5784 5.806734 GCTGGTATTTCTGGAACCCTTACTT 60.807 44.000 0.00 0.00 31.97 2.24
4873 5785 4.324331 GCTGGTATTTCTGGAACCCTTACT 60.324 45.833 0.00 0.00 31.97 2.24
4874 5786 3.945921 GCTGGTATTTCTGGAACCCTTAC 59.054 47.826 0.00 0.00 31.97 2.34
4875 5787 3.850173 AGCTGGTATTTCTGGAACCCTTA 59.150 43.478 0.00 0.00 31.97 2.69
4876 5788 2.649816 AGCTGGTATTTCTGGAACCCTT 59.350 45.455 0.00 0.00 31.97 3.95
4877 5789 2.279173 AGCTGGTATTTCTGGAACCCT 58.721 47.619 0.00 0.00 31.97 4.34
4878 5790 2.755103 CAAGCTGGTATTTCTGGAACCC 59.245 50.000 0.00 0.00 31.97 4.11
4879 5791 3.421844 ACAAGCTGGTATTTCTGGAACC 58.578 45.455 0.00 0.00 0.00 3.62
4880 5792 4.798574 CAACAAGCTGGTATTTCTGGAAC 58.201 43.478 0.00 0.00 0.00 3.62
4881 5793 3.255642 GCAACAAGCTGGTATTTCTGGAA 59.744 43.478 0.00 0.00 41.15 3.53
4882 5794 2.819608 GCAACAAGCTGGTATTTCTGGA 59.180 45.455 0.00 0.00 41.15 3.86
4883 5795 3.221964 GCAACAAGCTGGTATTTCTGG 57.778 47.619 0.00 0.00 41.15 3.86
4895 5807 6.956047 AGTAAGTTACAAACTAGCAACAAGC 58.044 36.000 15.28 0.00 41.91 4.01
4896 5808 9.859692 GTTAGTAAGTTACAAACTAGCAACAAG 57.140 33.333 15.28 0.00 41.91 3.16
4897 5809 9.603921 AGTTAGTAAGTTACAAACTAGCAACAA 57.396 29.630 15.28 0.00 41.91 2.83
4898 5810 9.603921 AAGTTAGTAAGTTACAAACTAGCAACA 57.396 29.630 15.28 0.00 41.91 3.33
4899 5811 9.859692 CAAGTTAGTAAGTTACAAACTAGCAAC 57.140 33.333 15.28 5.97 41.91 4.17
4900 5812 9.603921 ACAAGTTAGTAAGTTACAAACTAGCAA 57.396 29.630 15.28 0.00 41.91 3.91
4901 5813 9.252962 GACAAGTTAGTAAGTTACAAACTAGCA 57.747 33.333 15.28 0.00 41.91 3.49
4902 5814 8.706936 GGACAAGTTAGTAAGTTACAAACTAGC 58.293 37.037 15.28 2.98 41.91 3.42
4903 5815 9.754382 TGGACAAGTTAGTAAGTTACAAACTAG 57.246 33.333 15.28 3.89 41.91 2.57
4905 5817 9.452287 TTTGGACAAGTTAGTAAGTTACAAACT 57.548 29.630 15.28 0.00 45.46 2.66
4906 5818 9.494479 GTTTGGACAAGTTAGTAAGTTACAAAC 57.506 33.333 23.80 23.80 36.34 2.93
4907 5819 8.676401 GGTTTGGACAAGTTAGTAAGTTACAAA 58.324 33.333 15.28 15.77 0.00 2.83
4908 5820 7.011295 CGGTTTGGACAAGTTAGTAAGTTACAA 59.989 37.037 15.28 6.51 0.00 2.41
4909 5821 6.479660 CGGTTTGGACAAGTTAGTAAGTTACA 59.520 38.462 15.28 1.20 0.00 2.41
4910 5822 6.881017 CGGTTTGGACAAGTTAGTAAGTTAC 58.119 40.000 4.78 4.78 0.00 2.50
4912 5824 5.996669 CGGTTTGGACAAGTTAGTAAGTT 57.003 39.130 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.