Multiple sequence alignment - TraesCS4A01G465700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G465700 chr4A 100.000 3077 0 0 1 3077 729113056 729116132 0.000000e+00 5683
1 TraesCS4A01G465700 chr4A 93.597 1265 74 6 1005 2267 728728981 728727722 0.000000e+00 1881
2 TraesCS4A01G465700 chr4A 91.048 849 75 1 1 848 609320107 609320955 0.000000e+00 1146
3 TraesCS4A01G465700 chr4A 91.364 799 54 5 2294 3077 728726829 728726031 0.000000e+00 1079
4 TraesCS4A01G465700 chr5B 94.104 848 50 0 1 848 65531151 65531998 0.000000e+00 1290
5 TraesCS4A01G465700 chr5B 82.621 1076 173 8 992 2064 542986730 542985666 0.000000e+00 939
6 TraesCS4A01G465700 chr5B 86.502 852 113 2 1 851 145014412 145013562 0.000000e+00 935
7 TraesCS4A01G465700 chr3B 93.168 849 55 3 1 848 246113969 246114815 0.000000e+00 1243
8 TraesCS4A01G465700 chr3B 91.048 849 75 1 1 848 89605494 89606342 0.000000e+00 1146
9 TraesCS4A01G465700 chr3B 89.801 853 83 4 1 852 3124721 3123872 0.000000e+00 1090
10 TraesCS4A01G465700 chr1B 92.571 848 63 0 1 848 5719981 5719134 0.000000e+00 1218
11 TraesCS4A01G465700 chr1B 89.474 855 87 3 1 852 299391752 299390898 0.000000e+00 1077
12 TraesCS4A01G465700 chr5A 91.069 851 76 0 1 851 487930903 487930053 0.000000e+00 1151
13 TraesCS4A01G465700 chr5A 81.532 1332 220 16 1006 2328 688666221 688664907 0.000000e+00 1074
14 TraesCS4A01G465700 chr5A 80.394 1321 224 25 992 2291 706563975 706565281 0.000000e+00 972
15 TraesCS4A01G465700 chr5A 82.518 961 147 18 1369 2318 688671977 688671027 0.000000e+00 824
16 TraesCS4A01G465700 chr5A 83.427 531 84 2 1369 1899 562999142 562998616 9.920000e-135 490
17 TraesCS4A01G465700 chr4B 81.865 1351 215 21 992 2328 650601689 650600355 0.000000e+00 1110
18 TraesCS4A01G465700 chr4B 80.752 1117 191 18 1000 2097 667564461 667563350 0.000000e+00 850
19 TraesCS4A01G465700 chr3D 81.683 1141 190 11 992 2131 597398057 597399179 0.000000e+00 931
20 TraesCS4A01G465700 chr5D 81.975 1104 176 9 999 2098 445382735 445381651 0.000000e+00 915
21 TraesCS4A01G465700 chr4D 87.450 502 62 1 1576 2077 504068738 504068238 7.400000e-161 577
22 TraesCS4A01G465700 chr4D 83.004 253 39 2 1900 2150 503967227 503966977 3.090000e-55 226


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G465700 chr4A 729113056 729116132 3076 False 5683 5683 100.0000 1 3077 1 chr4A.!!$F2 3076
1 TraesCS4A01G465700 chr4A 728726031 728728981 2950 True 1480 1881 92.4805 1005 3077 2 chr4A.!!$R1 2072
2 TraesCS4A01G465700 chr4A 609320107 609320955 848 False 1146 1146 91.0480 1 848 1 chr4A.!!$F1 847
3 TraesCS4A01G465700 chr5B 65531151 65531998 847 False 1290 1290 94.1040 1 848 1 chr5B.!!$F1 847
4 TraesCS4A01G465700 chr5B 542985666 542986730 1064 True 939 939 82.6210 992 2064 1 chr5B.!!$R2 1072
5 TraesCS4A01G465700 chr5B 145013562 145014412 850 True 935 935 86.5020 1 851 1 chr5B.!!$R1 850
6 TraesCS4A01G465700 chr3B 246113969 246114815 846 False 1243 1243 93.1680 1 848 1 chr3B.!!$F2 847
7 TraesCS4A01G465700 chr3B 89605494 89606342 848 False 1146 1146 91.0480 1 848 1 chr3B.!!$F1 847
8 TraesCS4A01G465700 chr3B 3123872 3124721 849 True 1090 1090 89.8010 1 852 1 chr3B.!!$R1 851
9 TraesCS4A01G465700 chr1B 5719134 5719981 847 True 1218 1218 92.5710 1 848 1 chr1B.!!$R1 847
10 TraesCS4A01G465700 chr1B 299390898 299391752 854 True 1077 1077 89.4740 1 852 1 chr1B.!!$R2 851
11 TraesCS4A01G465700 chr5A 487930053 487930903 850 True 1151 1151 91.0690 1 851 1 chr5A.!!$R1 850
12 TraesCS4A01G465700 chr5A 688664907 688666221 1314 True 1074 1074 81.5320 1006 2328 1 chr5A.!!$R3 1322
13 TraesCS4A01G465700 chr5A 706563975 706565281 1306 False 972 972 80.3940 992 2291 1 chr5A.!!$F1 1299
14 TraesCS4A01G465700 chr5A 688671027 688671977 950 True 824 824 82.5180 1369 2318 1 chr5A.!!$R4 949
15 TraesCS4A01G465700 chr5A 562998616 562999142 526 True 490 490 83.4270 1369 1899 1 chr5A.!!$R2 530
16 TraesCS4A01G465700 chr4B 650600355 650601689 1334 True 1110 1110 81.8650 992 2328 1 chr4B.!!$R1 1336
17 TraesCS4A01G465700 chr4B 667563350 667564461 1111 True 850 850 80.7520 1000 2097 1 chr4B.!!$R2 1097
18 TraesCS4A01G465700 chr3D 597398057 597399179 1122 False 931 931 81.6830 992 2131 1 chr3D.!!$F1 1139
19 TraesCS4A01G465700 chr5D 445381651 445382735 1084 True 915 915 81.9750 999 2098 1 chr5D.!!$R1 1099
20 TraesCS4A01G465700 chr4D 504068238 504068738 500 True 577 577 87.4500 1576 2077 1 chr4D.!!$R2 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
975 980 0.8364 TCCACACCCTCTGAACTCCC 60.836 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2798 3724 0.103937 CTCATTCCAGCTCCTCCGAC 59.896 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 2.338984 GAAGCAGTGACGGACGGT 59.661 61.111 0.00 0.00 0.00 4.83
396 397 1.152830 GCCCCAGACAAACTCCCAA 59.847 57.895 0.00 0.00 0.00 4.12
487 491 2.171840 GTAGCCAGAGAAGAGTGTGGA 58.828 52.381 0.00 0.00 32.38 4.02
514 518 1.003573 CTCCTGCCTTAGACCCCCT 59.996 63.158 0.00 0.00 0.00 4.79
551 556 2.433838 CCTGCAGCTCAGACGTGG 60.434 66.667 8.66 0.00 45.72 4.94
638 643 1.152830 GGGCCCTCAAAGTCCAACA 59.847 57.895 17.04 0.00 0.00 3.33
835 840 1.001760 AGGATCAGCTACCGGTGGT 59.998 57.895 19.93 10.24 39.09 4.16
848 853 4.660938 GTGGTTCCTTGCGCCCCT 62.661 66.667 4.18 0.00 0.00 4.79
852 857 4.594854 TTCCTTGCGCCCCTTGCA 62.595 61.111 4.18 0.00 41.33 4.08
855 860 3.297620 CTTGCGCCCCTTGCAGTT 61.298 61.111 4.18 0.00 44.28 3.16
856 861 3.562779 CTTGCGCCCCTTGCAGTTG 62.563 63.158 4.18 0.00 44.28 3.16
857 862 4.577677 TGCGCCCCTTGCAGTTGA 62.578 61.111 4.18 0.00 41.33 3.18
858 863 3.294493 GCGCCCCTTGCAGTTGAA 61.294 61.111 0.00 0.00 41.33 2.69
859 864 2.644992 CGCCCCTTGCAGTTGAAC 59.355 61.111 0.00 0.00 41.33 3.18
860 865 1.898574 CGCCCCTTGCAGTTGAACT 60.899 57.895 0.00 0.00 41.33 3.01
875 880 6.189567 CAGTTGAACTGTTTGTACGTTTAGG 58.810 40.000 16.84 0.00 41.19 2.69
876 881 5.295045 AGTTGAACTGTTTGTACGTTTAGGG 59.705 40.000 0.00 0.00 0.00 3.53
877 882 3.560896 TGAACTGTTTGTACGTTTAGGGC 59.439 43.478 0.00 0.00 0.00 5.19
878 883 3.480505 ACTGTTTGTACGTTTAGGGCT 57.519 42.857 0.00 0.00 0.00 5.19
879 884 3.812262 ACTGTTTGTACGTTTAGGGCTT 58.188 40.909 0.00 0.00 0.00 4.35
880 885 4.201657 ACTGTTTGTACGTTTAGGGCTTT 58.798 39.130 0.00 0.00 0.00 3.51
881 886 4.641541 ACTGTTTGTACGTTTAGGGCTTTT 59.358 37.500 0.00 0.00 0.00 2.27
882 887 5.125900 ACTGTTTGTACGTTTAGGGCTTTTT 59.874 36.000 0.00 0.00 0.00 1.94
905 910 5.789643 TTTTCTTCATTTGGTCTCCCTTG 57.210 39.130 0.00 0.00 0.00 3.61
906 911 4.722526 TTCTTCATTTGGTCTCCCTTGA 57.277 40.909 0.00 0.00 0.00 3.02
907 912 4.934797 TCTTCATTTGGTCTCCCTTGAT 57.065 40.909 0.00 0.00 0.00 2.57
908 913 5.261040 TCTTCATTTGGTCTCCCTTGATT 57.739 39.130 0.00 0.00 0.00 2.57
909 914 6.387192 TCTTCATTTGGTCTCCCTTGATTA 57.613 37.500 0.00 0.00 0.00 1.75
910 915 6.973642 TCTTCATTTGGTCTCCCTTGATTAT 58.026 36.000 0.00 0.00 0.00 1.28
911 916 8.101309 TCTTCATTTGGTCTCCCTTGATTATA 57.899 34.615 0.00 0.00 0.00 0.98
912 917 8.727149 TCTTCATTTGGTCTCCCTTGATTATAT 58.273 33.333 0.00 0.00 0.00 0.86
913 918 8.696043 TTCATTTGGTCTCCCTTGATTATATG 57.304 34.615 0.00 0.00 0.00 1.78
914 919 8.044574 TCATTTGGTCTCCCTTGATTATATGA 57.955 34.615 0.00 0.00 0.00 2.15
915 920 8.672329 TCATTTGGTCTCCCTTGATTATATGAT 58.328 33.333 0.00 0.00 0.00 2.45
916 921 8.737175 CATTTGGTCTCCCTTGATTATATGATG 58.263 37.037 0.00 0.00 0.00 3.07
917 922 5.809001 TGGTCTCCCTTGATTATATGATGC 58.191 41.667 0.00 0.00 0.00 3.91
918 923 4.872691 GGTCTCCCTTGATTATATGATGCG 59.127 45.833 0.00 0.00 0.00 4.73
919 924 5.337571 GGTCTCCCTTGATTATATGATGCGA 60.338 44.000 0.00 0.00 0.00 5.10
920 925 6.166279 GTCTCCCTTGATTATATGATGCGAA 58.834 40.000 0.00 0.00 0.00 4.70
921 926 6.820656 GTCTCCCTTGATTATATGATGCGAAT 59.179 38.462 0.00 0.00 0.00 3.34
922 927 7.010923 GTCTCCCTTGATTATATGATGCGAATC 59.989 40.741 0.00 0.00 0.00 2.52
923 928 6.115446 TCCCTTGATTATATGATGCGAATCC 58.885 40.000 0.00 0.00 0.00 3.01
924 929 5.297776 CCCTTGATTATATGATGCGAATCCC 59.702 44.000 0.00 0.00 0.00 3.85
925 930 6.118170 CCTTGATTATATGATGCGAATCCCT 58.882 40.000 0.00 0.00 0.00 4.20
926 931 6.600822 CCTTGATTATATGATGCGAATCCCTT 59.399 38.462 0.00 0.00 0.00 3.95
927 932 6.990341 TGATTATATGATGCGAATCCCTTG 57.010 37.500 0.00 0.00 0.00 3.61
928 933 6.710278 TGATTATATGATGCGAATCCCTTGA 58.290 36.000 0.00 0.00 0.00 3.02
929 934 7.341030 TGATTATATGATGCGAATCCCTTGAT 58.659 34.615 0.00 0.00 0.00 2.57
930 935 7.830697 TGATTATATGATGCGAATCCCTTGATT 59.169 33.333 0.00 0.00 43.91 2.57
931 936 9.330063 GATTATATGATGCGAATCCCTTGATTA 57.670 33.333 0.00 0.00 41.30 1.75
932 937 9.857656 ATTATATGATGCGAATCCCTTGATTAT 57.142 29.630 0.00 0.00 41.30 1.28
933 938 5.892160 ATGATGCGAATCCCTTGATTATG 57.108 39.130 0.00 0.00 41.30 1.90
934 939 4.717877 TGATGCGAATCCCTTGATTATGT 58.282 39.130 0.00 0.00 41.30 2.29
935 940 4.516321 TGATGCGAATCCCTTGATTATGTG 59.484 41.667 0.00 0.00 41.30 3.21
936 941 4.149511 TGCGAATCCCTTGATTATGTGA 57.850 40.909 0.00 0.00 41.30 3.58
937 942 4.717877 TGCGAATCCCTTGATTATGTGAT 58.282 39.130 0.00 0.00 41.30 3.06
938 943 4.516321 TGCGAATCCCTTGATTATGTGATG 59.484 41.667 0.00 0.00 41.30 3.07
939 944 4.614535 GCGAATCCCTTGATTATGTGATGC 60.615 45.833 0.00 0.00 41.30 3.91
940 945 4.516321 CGAATCCCTTGATTATGTGATGCA 59.484 41.667 0.00 0.00 41.30 3.96
941 946 5.334646 CGAATCCCTTGATTATGTGATGCAG 60.335 44.000 0.00 0.00 41.30 4.41
942 947 4.776435 TCCCTTGATTATGTGATGCAGA 57.224 40.909 0.00 0.00 0.00 4.26
943 948 5.314718 TCCCTTGATTATGTGATGCAGAT 57.685 39.130 0.00 0.00 0.00 2.90
944 949 5.311265 TCCCTTGATTATGTGATGCAGATC 58.689 41.667 0.00 0.00 0.00 2.75
945 950 5.067954 CCCTTGATTATGTGATGCAGATCA 58.932 41.667 0.00 0.00 36.16 2.92
946 951 5.181433 CCCTTGATTATGTGATGCAGATCAG 59.819 44.000 0.00 0.00 39.36 2.90
947 952 5.995897 CCTTGATTATGTGATGCAGATCAGA 59.004 40.000 0.00 0.00 39.36 3.27
948 953 6.655425 CCTTGATTATGTGATGCAGATCAGAT 59.345 38.462 5.41 5.41 43.31 2.90
949 954 7.148390 CCTTGATTATGTGATGCAGATCAGATC 60.148 40.741 3.41 1.64 40.77 2.75
950 955 6.171213 TGATTATGTGATGCAGATCAGATCC 58.829 40.000 6.80 0.00 40.77 3.36
951 956 5.556006 TTATGTGATGCAGATCAGATCCA 57.444 39.130 6.80 0.00 40.77 3.41
952 957 4.642466 ATGTGATGCAGATCAGATCCAT 57.358 40.909 6.80 4.46 37.96 3.41
953 958 5.757099 ATGTGATGCAGATCAGATCCATA 57.243 39.130 6.80 0.00 37.96 2.74
954 959 5.148651 TGTGATGCAGATCAGATCCATAG 57.851 43.478 6.80 0.00 39.36 2.23
955 960 4.591924 TGTGATGCAGATCAGATCCATAGT 59.408 41.667 6.80 0.00 39.36 2.12
956 961 5.071384 TGTGATGCAGATCAGATCCATAGTT 59.929 40.000 6.80 0.00 39.36 2.24
957 962 5.638657 GTGATGCAGATCAGATCCATAGTTC 59.361 44.000 6.80 0.00 39.36 3.01
958 963 4.613925 TGCAGATCAGATCCATAGTTCC 57.386 45.455 6.80 0.00 0.00 3.62
959 964 3.969312 TGCAGATCAGATCCATAGTTCCA 59.031 43.478 6.80 0.00 0.00 3.53
960 965 4.202295 TGCAGATCAGATCCATAGTTCCAC 60.202 45.833 6.80 0.00 0.00 4.02
961 966 4.202295 GCAGATCAGATCCATAGTTCCACA 60.202 45.833 6.80 0.00 0.00 4.17
962 967 5.295950 CAGATCAGATCCATAGTTCCACAC 58.704 45.833 6.80 0.00 0.00 3.82
963 968 4.346418 AGATCAGATCCATAGTTCCACACC 59.654 45.833 6.80 0.00 0.00 4.16
964 969 2.771943 TCAGATCCATAGTTCCACACCC 59.228 50.000 0.00 0.00 0.00 4.61
965 970 2.774234 CAGATCCATAGTTCCACACCCT 59.226 50.000 0.00 0.00 0.00 4.34
966 971 3.041946 AGATCCATAGTTCCACACCCTC 58.958 50.000 0.00 0.00 0.00 4.30
967 972 2.642171 TCCATAGTTCCACACCCTCT 57.358 50.000 0.00 0.00 0.00 3.69
968 973 2.187958 TCCATAGTTCCACACCCTCTG 58.812 52.381 0.00 0.00 0.00 3.35
969 974 2.187958 CCATAGTTCCACACCCTCTGA 58.812 52.381 0.00 0.00 0.00 3.27
970 975 2.571653 CCATAGTTCCACACCCTCTGAA 59.428 50.000 0.00 0.00 0.00 3.02
971 976 3.600388 CATAGTTCCACACCCTCTGAAC 58.400 50.000 0.00 0.00 37.86 3.18
972 977 1.807814 AGTTCCACACCCTCTGAACT 58.192 50.000 0.00 0.00 41.81 3.01
973 978 1.694696 AGTTCCACACCCTCTGAACTC 59.305 52.381 0.00 0.00 42.72 3.01
974 979 1.056660 TTCCACACCCTCTGAACTCC 58.943 55.000 0.00 0.00 0.00 3.85
975 980 0.836400 TCCACACCCTCTGAACTCCC 60.836 60.000 0.00 0.00 0.00 4.30
976 981 0.838122 CCACACCCTCTGAACTCCCT 60.838 60.000 0.00 0.00 0.00 4.20
977 982 1.552486 CCACACCCTCTGAACTCCCTA 60.552 57.143 0.00 0.00 0.00 3.53
978 983 1.550976 CACACCCTCTGAACTCCCTAC 59.449 57.143 0.00 0.00 0.00 3.18
979 984 1.149288 ACACCCTCTGAACTCCCTACA 59.851 52.381 0.00 0.00 0.00 2.74
980 985 1.827969 CACCCTCTGAACTCCCTACAG 59.172 57.143 0.00 0.00 0.00 2.74
981 986 1.433592 ACCCTCTGAACTCCCTACAGT 59.566 52.381 0.00 0.00 33.93 3.55
982 987 2.158143 ACCCTCTGAACTCCCTACAGTT 60.158 50.000 0.00 0.00 39.43 3.16
983 988 2.907042 CCCTCTGAACTCCCTACAGTTT 59.093 50.000 0.00 0.00 36.71 2.66
984 989 3.328050 CCCTCTGAACTCCCTACAGTTTT 59.672 47.826 0.00 0.00 36.71 2.43
985 990 4.202472 CCCTCTGAACTCCCTACAGTTTTT 60.202 45.833 0.00 0.00 36.71 1.94
986 991 4.757149 CCTCTGAACTCCCTACAGTTTTTG 59.243 45.833 0.00 0.00 36.71 2.44
987 992 4.134563 TCTGAACTCCCTACAGTTTTTGC 58.865 43.478 0.00 0.00 36.71 3.68
988 993 3.882888 CTGAACTCCCTACAGTTTTTGCA 59.117 43.478 0.00 0.00 36.71 4.08
989 994 4.274147 TGAACTCCCTACAGTTTTTGCAA 58.726 39.130 0.00 0.00 36.71 4.08
990 995 4.892934 TGAACTCCCTACAGTTTTTGCAAT 59.107 37.500 0.00 0.00 36.71 3.56
997 1002 2.209273 ACAGTTTTTGCAATTTCCGCC 58.791 42.857 0.00 0.00 0.00 6.13
1035 1040 5.189928 TCAACTTCTTCAGTTAACAAGCCA 58.810 37.500 8.61 0.00 44.60 4.75
1155 1162 0.109873 AGTTCGTTACCTCGAGCACG 60.110 55.000 18.67 18.67 41.94 5.34
1243 1250 1.523938 GCCTACATGTCGGCCTTCC 60.524 63.158 26.87 2.93 40.43 3.46
1434 1459 0.821517 TATCCCGCAATGACGACTGT 59.178 50.000 0.00 0.00 34.06 3.55
1472 1497 6.038825 TGTGTTTTGACCGTCATAAAAGACAT 59.961 34.615 18.02 0.00 40.39 3.06
1503 1528 0.911769 ATGCAAGCACAGCCCTAGTA 59.088 50.000 0.00 0.00 0.00 1.82
1514 1539 1.335882 GCCCTAGTACCACTCCCACC 61.336 65.000 0.00 0.00 0.00 4.61
1515 1540 0.042131 CCCTAGTACCACTCCCACCA 59.958 60.000 0.00 0.00 0.00 4.17
1560 1585 4.549458 CAAACATGTTGAAGGATGGACAC 58.451 43.478 12.82 0.00 0.00 3.67
1650 1675 4.511527 GATCATCTGTCTTCAAGGCTGAA 58.488 43.478 2.35 0.00 39.30 3.02
2201 2253 6.220201 TCTCTTCATGAACGTGTGATTTGTA 58.780 36.000 3.38 0.00 0.00 2.41
2284 2858 9.751542 TCTTTTGTGTTGTTTTGTTTTTCTCTA 57.248 25.926 0.00 0.00 0.00 2.43
2297 3216 7.633193 TGTTTTTCTCTAACTTTTGGCAGTA 57.367 32.000 0.00 0.00 0.00 2.74
2307 3226 8.380099 TCTAACTTTTGGCAGTAAAATCTCCTA 58.620 33.333 0.00 0.00 0.00 2.94
2353 3272 6.040391 ACTGAAGCTCTGTACCTGATCTTATC 59.960 42.308 0.00 0.00 0.00 1.75
2358 3277 5.475220 GCTCTGTACCTGATCTTATCTGCTA 59.525 44.000 0.00 0.00 0.00 3.49
2411 3334 5.280011 CCCCAGTTAACTCTGTACTTGTGAT 60.280 44.000 4.77 0.00 34.02 3.06
2423 3346 5.737860 TGTACTTGTGATCAGATGAATGCT 58.262 37.500 12.08 0.00 0.00 3.79
2456 3379 4.783621 ATGCAGGCCGCGTGATGT 62.784 61.111 17.05 0.00 46.97 3.06
2470 3393 1.134818 GTGATGTGCCGGTGTCTGATA 60.135 52.381 1.90 0.00 0.00 2.15
2476 3399 0.391130 GCCGGTGTCTGATAGCACAA 60.391 55.000 1.90 0.00 37.35 3.33
2496 3419 1.574134 CAGGCCACAGCTTGTTTTTG 58.426 50.000 5.01 0.00 41.02 2.44
2502 3425 3.493176 GCCACAGCTTGTTTTTGATTCCT 60.493 43.478 0.00 0.00 35.50 3.36
2507 3430 5.069516 ACAGCTTGTTTTTGATTCCTCATGT 59.930 36.000 0.00 0.00 0.00 3.21
2573 3496 1.071605 CCAGCTCAGCACGAAGTAAC 58.928 55.000 0.00 0.00 41.61 2.50
2585 3508 2.764572 ACGAAGTAACCTATGTCAGGGG 59.235 50.000 0.00 0.00 45.78 4.79
2601 3524 5.662208 TGTCAGGGGATTGATTTGCAAATAT 59.338 36.000 24.15 15.14 40.48 1.28
2634 3557 9.836864 ATGTGTACAATCATAGACATGTGTAAT 57.163 29.630 1.15 0.00 37.58 1.89
2680 3603 6.094048 ACCAATTTTGACATAGGTTGAGATCG 59.906 38.462 0.00 0.00 0.00 3.69
2700 3623 1.149986 TGTTATTGGTGGTGGGGTGA 58.850 50.000 0.00 0.00 0.00 4.02
2701 3624 1.713647 TGTTATTGGTGGTGGGGTGAT 59.286 47.619 0.00 0.00 0.00 3.06
2711 3634 1.609210 TGGGGTGATCGACTGCTCA 60.609 57.895 0.00 0.00 0.00 4.26
2755 3681 1.302511 GCCGAAAGCCTCCTTGTCA 60.303 57.895 0.00 0.00 34.35 3.58
2760 3686 3.077359 CGAAAGCCTCCTTGTCATCTTT 58.923 45.455 0.00 0.00 0.00 2.52
2761 3687 3.120060 CGAAAGCCTCCTTGTCATCTTTG 60.120 47.826 0.00 0.00 0.00 2.77
2785 3711 1.464734 TCGAGCTCGAGGAATTGTCT 58.535 50.000 33.84 0.00 44.22 3.41
2798 3724 1.901591 ATTGTCTGACACAGCCTTGG 58.098 50.000 10.56 0.00 35.97 3.61
2799 3725 0.546122 TTGTCTGACACAGCCTTGGT 59.454 50.000 10.56 0.00 35.97 3.67
2804 3730 1.374758 GACACAGCCTTGGTCGGAG 60.375 63.158 0.00 0.00 0.00 4.63
2806 3732 2.203788 ACAGCCTTGGTCGGAGGA 60.204 61.111 0.00 0.00 36.33 3.71
2818 3744 0.324738 TCGGAGGAGCTGGAATGAGT 60.325 55.000 0.00 0.00 0.00 3.41
2829 3755 3.686726 GCTGGAATGAGTAGGTGAAACAG 59.313 47.826 0.00 0.00 39.98 3.16
2836 3762 2.633481 GAGTAGGTGAAACAGTGGGTCT 59.367 50.000 0.00 0.00 39.98 3.85
2841 3767 1.604278 GTGAAACAGTGGGTCTGAAGC 59.396 52.381 0.00 0.00 46.27 3.86
2880 3814 2.645192 GGGCCCGATTTTGGTGTGG 61.645 63.158 5.69 0.00 0.00 4.17
2882 3816 1.584495 GCCCGATTTTGGTGTGGTC 59.416 57.895 0.00 0.00 0.00 4.02
2885 3819 1.544537 CCCGATTTTGGTGTGGTCTGA 60.545 52.381 0.00 0.00 0.00 3.27
2899 3833 2.627699 TGGTCTGAGAAAAATGGTTGGC 59.372 45.455 0.00 0.00 0.00 4.52
2903 3837 0.732538 GAGAAAAATGGTTGGCGGCG 60.733 55.000 0.51 0.51 0.00 6.46
2933 3867 0.184692 TGTGTTTGTGGAGGATGCCA 59.815 50.000 0.00 0.00 35.02 4.92
2958 3892 2.162681 GAATTTATCATGGCGGGGAGG 58.837 52.381 0.00 0.00 0.00 4.30
2960 3894 0.182537 TTTATCATGGCGGGGAGGTG 59.817 55.000 0.00 0.00 0.00 4.00
2966 3900 3.467226 GGCGGGGAGGTGAATCGA 61.467 66.667 0.00 0.00 0.00 3.59
2971 3905 0.249489 GGGGAGGTGAATCGACATCG 60.249 60.000 0.00 0.00 41.45 3.84
3032 3966 3.855689 AGCGGTGATCAAAGGAATTTG 57.144 42.857 0.00 0.00 0.00 2.32
3033 3967 2.493278 AGCGGTGATCAAAGGAATTTGG 59.507 45.455 0.00 0.00 32.99 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.750637 GTCTCTGAGGGGCGACGA 60.751 66.667 4.59 0.00 0.00 4.20
86 87 2.338984 GAACCGTCCGTCACTGCT 59.661 61.111 0.00 0.00 0.00 4.24
396 397 2.960688 GCCTCTTCTTCTGGGCGGT 61.961 63.158 0.00 0.00 35.08 5.68
514 518 1.292223 GGTGACTACGAGCTTGGCA 59.708 57.895 5.79 0.00 0.00 4.92
551 556 1.609320 GCCTCCCTCGGATATTCTTGC 60.609 57.143 0.00 0.00 0.00 4.01
638 643 4.497291 TGTTTGAACACTCCTTACCTGT 57.503 40.909 0.00 0.00 33.17 4.00
652 657 3.390967 TGGAGTCATCTGAGGTGTTTGAA 59.609 43.478 0.00 0.00 0.00 2.69
667 672 2.203640 AGTGAGCGGGTGGAGTCA 60.204 61.111 0.00 0.00 0.00 3.41
852 857 5.295045 CCCTAAACGTACAAACAGTTCAACT 59.705 40.000 0.00 0.00 0.00 3.16
853 858 5.504392 CCCTAAACGTACAAACAGTTCAAC 58.496 41.667 0.00 0.00 0.00 3.18
854 859 4.035441 GCCCTAAACGTACAAACAGTTCAA 59.965 41.667 0.00 0.00 0.00 2.69
855 860 3.560896 GCCCTAAACGTACAAACAGTTCA 59.439 43.478 0.00 0.00 0.00 3.18
856 861 3.811497 AGCCCTAAACGTACAAACAGTTC 59.189 43.478 0.00 0.00 0.00 3.01
857 862 3.812262 AGCCCTAAACGTACAAACAGTT 58.188 40.909 0.00 0.00 0.00 3.16
858 863 3.480505 AGCCCTAAACGTACAAACAGT 57.519 42.857 0.00 0.00 0.00 3.55
859 864 4.823790 AAAGCCCTAAACGTACAAACAG 57.176 40.909 0.00 0.00 0.00 3.16
860 865 5.579564 AAAAAGCCCTAAACGTACAAACA 57.420 34.783 0.00 0.00 0.00 2.83
896 901 5.724328 TCGCATCATATAATCAAGGGAGAC 58.276 41.667 0.00 0.00 0.00 3.36
897 902 6.358974 TTCGCATCATATAATCAAGGGAGA 57.641 37.500 0.00 0.00 0.00 3.71
898 903 6.259608 GGATTCGCATCATATAATCAAGGGAG 59.740 42.308 0.00 0.00 31.38 4.30
899 904 6.115446 GGATTCGCATCATATAATCAAGGGA 58.885 40.000 0.00 0.00 31.38 4.20
900 905 5.297776 GGGATTCGCATCATATAATCAAGGG 59.702 44.000 0.00 0.00 31.38 3.95
901 906 6.118170 AGGGATTCGCATCATATAATCAAGG 58.882 40.000 3.36 0.00 31.38 3.61
902 907 7.335171 TCAAGGGATTCGCATCATATAATCAAG 59.665 37.037 3.36 0.00 31.38 3.02
903 908 7.167535 TCAAGGGATTCGCATCATATAATCAA 58.832 34.615 3.36 0.00 31.38 2.57
904 909 6.710278 TCAAGGGATTCGCATCATATAATCA 58.290 36.000 3.36 0.00 31.38 2.57
905 910 7.798596 ATCAAGGGATTCGCATCATATAATC 57.201 36.000 3.36 0.00 0.00 1.75
906 911 9.857656 ATAATCAAGGGATTCGCATCATATAAT 57.142 29.630 3.36 0.00 42.66 1.28
907 912 9.112725 CATAATCAAGGGATTCGCATCATATAA 57.887 33.333 3.36 0.00 42.66 0.98
908 913 8.267183 ACATAATCAAGGGATTCGCATCATATA 58.733 33.333 3.36 0.00 42.66 0.86
909 914 7.066645 CACATAATCAAGGGATTCGCATCATAT 59.933 37.037 3.36 0.00 42.66 1.78
910 915 6.372381 CACATAATCAAGGGATTCGCATCATA 59.628 38.462 3.36 0.00 42.66 2.15
911 916 5.182570 CACATAATCAAGGGATTCGCATCAT 59.817 40.000 3.36 0.00 42.66 2.45
912 917 4.516321 CACATAATCAAGGGATTCGCATCA 59.484 41.667 3.36 0.00 42.66 3.07
913 918 4.756642 TCACATAATCAAGGGATTCGCATC 59.243 41.667 3.36 0.00 42.66 3.91
914 919 4.717877 TCACATAATCAAGGGATTCGCAT 58.282 39.130 3.36 0.00 42.66 4.73
915 920 4.149511 TCACATAATCAAGGGATTCGCA 57.850 40.909 3.36 0.00 42.66 5.10
916 921 4.614535 GCATCACATAATCAAGGGATTCGC 60.615 45.833 0.00 0.00 42.66 4.70
917 922 4.516321 TGCATCACATAATCAAGGGATTCG 59.484 41.667 0.00 0.00 42.66 3.34
918 923 5.766670 TCTGCATCACATAATCAAGGGATTC 59.233 40.000 0.00 0.00 42.66 2.52
919 924 5.698104 TCTGCATCACATAATCAAGGGATT 58.302 37.500 0.00 0.00 45.50 3.01
920 925 5.314718 TCTGCATCACATAATCAAGGGAT 57.685 39.130 0.00 0.00 34.43 3.85
921 926 4.776435 TCTGCATCACATAATCAAGGGA 57.224 40.909 0.00 0.00 0.00 4.20
922 927 5.067954 TGATCTGCATCACATAATCAAGGG 58.932 41.667 0.00 0.00 33.80 3.95
923 928 5.995897 TCTGATCTGCATCACATAATCAAGG 59.004 40.000 0.00 0.00 33.80 3.61
924 929 7.148390 GGATCTGATCTGCATCACATAATCAAG 60.148 40.741 16.61 0.00 33.80 3.02
925 930 6.653740 GGATCTGATCTGCATCACATAATCAA 59.346 38.462 16.61 0.00 33.80 2.57
926 931 6.171213 GGATCTGATCTGCATCACATAATCA 58.829 40.000 16.61 0.00 33.80 2.57
927 932 6.171213 TGGATCTGATCTGCATCACATAATC 58.829 40.000 16.61 0.00 33.80 1.75
928 933 6.123045 TGGATCTGATCTGCATCACATAAT 57.877 37.500 16.61 0.00 33.80 1.28
929 934 5.556006 TGGATCTGATCTGCATCACATAA 57.444 39.130 16.61 0.00 33.80 1.90
930 935 5.757099 ATGGATCTGATCTGCATCACATA 57.243 39.130 16.61 0.00 33.80 2.29
931 936 4.642466 ATGGATCTGATCTGCATCACAT 57.358 40.909 16.61 7.39 33.80 3.21
932 937 4.591924 ACTATGGATCTGATCTGCATCACA 59.408 41.667 16.61 5.46 33.80 3.58
933 938 5.149973 ACTATGGATCTGATCTGCATCAC 57.850 43.478 16.61 0.00 33.80 3.06
934 939 5.279859 GGAACTATGGATCTGATCTGCATCA 60.280 44.000 16.61 6.78 36.62 3.07
935 940 5.177326 GGAACTATGGATCTGATCTGCATC 58.823 45.833 16.61 8.33 0.00 3.91
936 941 4.596212 TGGAACTATGGATCTGATCTGCAT 59.404 41.667 16.61 14.06 0.00 3.96
937 942 3.969312 TGGAACTATGGATCTGATCTGCA 59.031 43.478 16.61 8.13 0.00 4.41
938 943 4.202295 TGTGGAACTATGGATCTGATCTGC 60.202 45.833 16.61 2.65 38.04 4.26
939 944 5.295950 GTGTGGAACTATGGATCTGATCTG 58.704 45.833 16.61 7.91 38.04 2.90
940 945 4.346418 GGTGTGGAACTATGGATCTGATCT 59.654 45.833 16.61 1.43 38.04 2.75
941 946 4.503991 GGGTGTGGAACTATGGATCTGATC 60.504 50.000 9.18 9.18 38.04 2.92
942 947 3.392616 GGGTGTGGAACTATGGATCTGAT 59.607 47.826 0.00 0.00 38.04 2.90
943 948 2.771943 GGGTGTGGAACTATGGATCTGA 59.228 50.000 0.00 0.00 38.04 3.27
944 949 2.774234 AGGGTGTGGAACTATGGATCTG 59.226 50.000 0.00 0.00 38.04 2.90
945 950 3.041946 GAGGGTGTGGAACTATGGATCT 58.958 50.000 0.00 0.00 38.04 2.75
946 951 3.041946 AGAGGGTGTGGAACTATGGATC 58.958 50.000 0.00 0.00 38.04 3.36
947 952 2.774234 CAGAGGGTGTGGAACTATGGAT 59.226 50.000 0.00 0.00 38.04 3.41
948 953 2.187958 CAGAGGGTGTGGAACTATGGA 58.812 52.381 0.00 0.00 38.04 3.41
949 954 2.187958 TCAGAGGGTGTGGAACTATGG 58.812 52.381 0.00 0.00 38.04 2.74
950 955 3.261897 AGTTCAGAGGGTGTGGAACTATG 59.738 47.826 4.23 0.00 45.81 2.23
951 956 3.521727 AGTTCAGAGGGTGTGGAACTAT 58.478 45.455 4.23 0.00 45.81 2.12
952 957 2.972348 AGTTCAGAGGGTGTGGAACTA 58.028 47.619 4.23 0.00 45.81 2.24
953 958 1.807814 AGTTCAGAGGGTGTGGAACT 58.192 50.000 0.00 0.00 43.64 3.01
954 959 1.270893 GGAGTTCAGAGGGTGTGGAAC 60.271 57.143 0.00 0.00 39.83 3.62
955 960 1.056660 GGAGTTCAGAGGGTGTGGAA 58.943 55.000 0.00 0.00 0.00 3.53
956 961 0.836400 GGGAGTTCAGAGGGTGTGGA 60.836 60.000 0.00 0.00 0.00 4.02
957 962 0.838122 AGGGAGTTCAGAGGGTGTGG 60.838 60.000 0.00 0.00 0.00 4.17
958 963 1.550976 GTAGGGAGTTCAGAGGGTGTG 59.449 57.143 0.00 0.00 0.00 3.82
959 964 1.149288 TGTAGGGAGTTCAGAGGGTGT 59.851 52.381 0.00 0.00 0.00 4.16
960 965 1.827969 CTGTAGGGAGTTCAGAGGGTG 59.172 57.143 0.00 0.00 0.00 4.61
961 966 1.433592 ACTGTAGGGAGTTCAGAGGGT 59.566 52.381 0.00 0.00 33.93 4.34
962 967 2.239681 ACTGTAGGGAGTTCAGAGGG 57.760 55.000 0.00 0.00 33.93 4.30
963 968 4.625607 AAAACTGTAGGGAGTTCAGAGG 57.374 45.455 0.00 0.00 35.01 3.69
964 969 4.214332 GCAAAAACTGTAGGGAGTTCAGAG 59.786 45.833 0.00 0.00 35.01 3.35
965 970 4.134563 GCAAAAACTGTAGGGAGTTCAGA 58.865 43.478 0.00 0.00 35.01 3.27
966 971 3.882888 TGCAAAAACTGTAGGGAGTTCAG 59.117 43.478 0.00 0.00 35.01 3.02
967 972 3.892284 TGCAAAAACTGTAGGGAGTTCA 58.108 40.909 0.00 0.00 35.01 3.18
968 973 4.911514 TTGCAAAAACTGTAGGGAGTTC 57.088 40.909 0.00 0.00 35.01 3.01
969 974 5.869649 AATTGCAAAAACTGTAGGGAGTT 57.130 34.783 1.71 0.00 37.81 3.01
970 975 5.221441 GGAAATTGCAAAAACTGTAGGGAGT 60.221 40.000 1.71 0.00 0.00 3.85
971 976 5.230182 GGAAATTGCAAAAACTGTAGGGAG 58.770 41.667 1.71 0.00 0.00 4.30
972 977 4.261825 CGGAAATTGCAAAAACTGTAGGGA 60.262 41.667 1.71 0.00 0.00 4.20
973 978 3.987220 CGGAAATTGCAAAAACTGTAGGG 59.013 43.478 1.71 0.00 0.00 3.53
974 979 3.428534 GCGGAAATTGCAAAAACTGTAGG 59.571 43.478 1.71 0.00 0.00 3.18
975 980 3.428534 GGCGGAAATTGCAAAAACTGTAG 59.571 43.478 1.71 0.00 0.00 2.74
976 981 3.385577 GGCGGAAATTGCAAAAACTGTA 58.614 40.909 1.71 0.00 0.00 2.74
977 982 2.209273 GGCGGAAATTGCAAAAACTGT 58.791 42.857 1.71 0.00 0.00 3.55
978 983 1.530720 GGGCGGAAATTGCAAAAACTG 59.469 47.619 1.71 3.96 0.00 3.16
979 984 1.542328 GGGGCGGAAATTGCAAAAACT 60.542 47.619 1.71 0.00 0.00 2.66
980 985 0.871722 GGGGCGGAAATTGCAAAAAC 59.128 50.000 1.71 0.00 0.00 2.43
981 986 0.469917 TGGGGCGGAAATTGCAAAAA 59.530 45.000 1.71 0.00 0.00 1.94
982 987 0.689623 ATGGGGCGGAAATTGCAAAA 59.310 45.000 1.71 0.00 0.00 2.44
983 988 0.036577 CATGGGGCGGAAATTGCAAA 60.037 50.000 1.71 0.00 0.00 3.68
984 989 1.595882 CATGGGGCGGAAATTGCAA 59.404 52.632 0.00 0.00 0.00 4.08
985 990 2.357575 CCATGGGGCGGAAATTGCA 61.358 57.895 2.85 0.00 0.00 4.08
986 991 2.500646 CCATGGGGCGGAAATTGC 59.499 61.111 2.85 0.00 0.00 3.56
997 1002 0.318120 GTTGAGTTGTTGGCCATGGG 59.682 55.000 15.13 0.00 0.00 4.00
1155 1162 2.092882 GTAGCCACCGACGCTGAAC 61.093 63.158 0.00 0.00 37.12 3.18
1472 1497 1.911293 GCTTGCATCTTCCGTGCGAA 61.911 55.000 0.00 0.00 45.37 4.70
1503 1528 2.121832 TCCGATGGTGGGAGTGGT 59.878 61.111 0.00 0.00 0.00 4.16
1514 1539 1.301637 TGTGTGTGCAGGTCCGATG 60.302 57.895 0.00 0.00 0.00 3.84
1515 1540 1.301716 GTGTGTGTGCAGGTCCGAT 60.302 57.895 0.00 0.00 0.00 4.18
1560 1585 1.332686 CTGAATGTCACATCCATGCCG 59.667 52.381 0.00 0.00 0.00 5.69
1620 1645 4.241555 ACAGATGATCGGGCGGCC 62.242 66.667 20.04 20.04 0.00 6.13
1650 1675 5.066593 GTCTCCTTCATCTGACCAAAAAGT 58.933 41.667 0.00 0.00 0.00 2.66
1677 1702 6.127952 TGTCATCAATCTCGATGCATTTCAAA 60.128 34.615 0.00 0.00 42.15 2.69
1937 1970 4.319177 AGAAAGGTATGTGAGACAAGCAC 58.681 43.478 0.00 0.00 36.81 4.40
2159 2201 5.331876 AGAGAAGTTCGGTCTTAGAATGG 57.668 43.478 0.00 0.00 0.00 3.16
2168 2220 3.365220 CGTTCATGAAGAGAAGTTCGGTC 59.635 47.826 8.80 0.00 0.00 4.79
2171 2223 3.736252 ACACGTTCATGAAGAGAAGTTCG 59.264 43.478 8.80 8.73 0.00 3.95
2201 2253 9.860898 GAATTTTTAGTGCCAATAATTCAGAGT 57.139 29.630 0.00 0.00 36.58 3.24
2278 2852 8.691661 AGATTTTACTGCCAAAAGTTAGAGAA 57.308 30.769 0.00 0.00 31.29 2.87
2284 2858 9.178758 CTATAGGAGATTTTACTGCCAAAAGTT 57.821 33.333 0.00 0.00 31.29 2.66
2286 3205 8.964476 TCTATAGGAGATTTTACTGCCAAAAG 57.036 34.615 0.00 0.00 31.29 2.27
2297 3216 5.589050 GCCGTTTGGTTCTATAGGAGATTTT 59.411 40.000 0.00 0.00 37.67 1.82
2307 3226 2.159382 CCTTGTGCCGTTTGGTTCTAT 58.841 47.619 0.00 0.00 37.67 1.98
2358 3277 3.639094 AGTAGTTGAAGAGACTGCAGTGT 59.361 43.478 27.27 22.38 32.94 3.55
2411 3334 5.220912 CGAAGCCATTTAAGCATTCATCTGA 60.221 40.000 0.00 0.00 0.00 3.27
2456 3379 1.218047 GTGCTATCAGACACCGGCA 59.782 57.895 0.00 0.00 0.00 5.69
2470 3393 2.908940 GCTGTGGCCTGTTGTGCT 60.909 61.111 3.32 0.00 0.00 4.40
2476 3399 1.134729 CAAAAACAAGCTGTGGCCTGT 60.135 47.619 3.32 0.00 44.03 4.00
2496 3419 4.576463 AGCGGTAATGAAACATGAGGAATC 59.424 41.667 0.00 0.00 0.00 2.52
2502 3425 2.026729 TCCCAGCGGTAATGAAACATGA 60.027 45.455 0.00 0.00 0.00 3.07
2507 3430 1.562008 TCCATCCCAGCGGTAATGAAA 59.438 47.619 5.63 0.00 0.00 2.69
2573 3496 3.571401 GCAAATCAATCCCCTGACATAGG 59.429 47.826 0.00 0.00 46.88 2.57
2655 3578 6.094048 CGATCTCAACCTATGTCAAAATTGGT 59.906 38.462 0.00 0.00 37.28 3.67
2680 3603 1.202952 TCACCCCACCACCAATAACAC 60.203 52.381 0.00 0.00 0.00 3.32
2700 3623 1.028905 GTAGAGGCTGAGCAGTCGAT 58.971 55.000 6.82 0.00 38.27 3.59
2701 3624 1.032657 GGTAGAGGCTGAGCAGTCGA 61.033 60.000 6.82 0.00 38.27 4.20
2711 3634 0.926720 TGGAGGAGGAGGTAGAGGCT 60.927 60.000 0.00 0.00 0.00 4.58
2737 3663 0.678048 ATGACAAGGAGGCTTTCGGC 60.678 55.000 0.00 0.00 40.90 5.54
2750 3676 3.876914 AGCTCGAACAACAAAGATGACAA 59.123 39.130 0.00 0.00 0.00 3.18
2755 3681 3.026630 TCGAGCTCGAACAACAAAGAT 57.973 42.857 35.16 0.00 46.30 2.40
2785 3711 2.099652 CTCCGACCAAGGCTGTGTCA 62.100 60.000 14.67 0.00 0.00 3.58
2798 3724 0.103937 CTCATTCCAGCTCCTCCGAC 59.896 60.000 0.00 0.00 0.00 4.79
2799 3725 0.324738 ACTCATTCCAGCTCCTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
2804 3730 2.111384 TCACCTACTCATTCCAGCTCC 58.889 52.381 0.00 0.00 0.00 4.70
2806 3732 3.327757 TGTTTCACCTACTCATTCCAGCT 59.672 43.478 0.00 0.00 0.00 4.24
2818 3744 2.684943 TCAGACCCACTGTTTCACCTA 58.315 47.619 0.00 0.00 45.86 3.08
2829 3755 1.376553 GAGGCTGCTTCAGACCCAC 60.377 63.158 6.91 0.00 41.11 4.61
2836 3762 2.951269 CCATTGTGAGGCTGCTTCA 58.049 52.632 10.66 10.66 0.00 3.02
2867 3801 2.766313 TCTCAGACCACACCAAAATCG 58.234 47.619 0.00 0.00 0.00 3.34
2880 3814 2.351738 CCGCCAACCATTTTTCTCAGAC 60.352 50.000 0.00 0.00 0.00 3.51
2882 3816 1.669795 GCCGCCAACCATTTTTCTCAG 60.670 52.381 0.00 0.00 0.00 3.35
2885 3819 1.288752 CGCCGCCAACCATTTTTCT 59.711 52.632 0.00 0.00 0.00 2.52
2899 3833 3.357079 ACAAGCTCTTTGCCGCCG 61.357 61.111 0.00 0.00 44.23 6.46
2903 3837 2.195922 CACAAACACAAGCTCTTTGCC 58.804 47.619 0.00 0.00 44.23 4.52
2914 3848 0.184692 TGGCATCCTCCACAAACACA 59.815 50.000 0.00 0.00 0.00 3.72
2933 3867 2.586425 CCGCCATGATAAATTCCCACT 58.414 47.619 0.00 0.00 0.00 4.00
2958 3892 1.631072 CGGTGCGATGTCGATTCAC 59.369 57.895 6.60 5.01 43.02 3.18
2960 3894 2.621000 GCGGTGCGATGTCGATTC 59.379 61.111 6.60 0.00 43.02 2.52
2966 3900 3.842925 AAACTGGGCGGTGCGATGT 62.843 57.895 0.00 0.00 0.00 3.06
3032 3966 2.882324 CTTCAGACTTAGAGGCGTTCC 58.118 52.381 0.00 0.00 0.00 3.62
3033 3967 2.263945 GCTTCAGACTTAGAGGCGTTC 58.736 52.381 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.