Multiple sequence alignment - TraesCS4A01G465400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G465400 chr4A 100.000 2438 0 0 1 2438 728943372 728940935 0.000000e+00 4503.0
1 TraesCS4A01G465400 chr4A 89.939 825 61 9 951 1762 730524173 730524988 0.000000e+00 1044.0
2 TraesCS4A01G465400 chr4A 89.697 825 63 10 951 1762 730577492 730578307 0.000000e+00 1033.0
3 TraesCS4A01G465400 chr4A 89.576 825 64 7 951 1762 730498278 730499093 0.000000e+00 1027.0
4 TraesCS4A01G465400 chr4A 89.576 825 64 7 951 1762 730630060 730630875 0.000000e+00 1027.0
5 TraesCS4A01G465400 chr4A 95.167 600 23 5 1843 2438 730499091 730499688 0.000000e+00 942.0
6 TraesCS4A01G465400 chr4A 95.167 600 23 5 1843 2438 730578305 730578902 0.000000e+00 942.0
7 TraesCS4A01G465400 chr4A 95.167 600 23 5 1843 2438 730630873 730631470 0.000000e+00 942.0
8 TraesCS4A01G465400 chr4A 95.000 600 24 5 1843 2438 730524986 730525583 0.000000e+00 937.0
9 TraesCS4A01G465400 chr4A 92.117 444 31 4 1846 2285 731069884 731069441 7.400000e-175 623.0
10 TraesCS4A01G465400 chr4A 90.465 409 23 6 1356 1762 728974004 728974398 2.150000e-145 525.0
11 TraesCS4A01G465400 chr4A 79.439 642 94 13 1122 1761 729308065 729307460 1.040000e-113 420.0
12 TraesCS4A01G465400 chr4A 92.958 284 15 4 1843 2121 728974396 728974679 2.260000e-110 409.0
13 TraesCS4A01G465400 chr4A 90.244 287 23 4 2001 2286 730548660 730548942 1.060000e-98 370.0
14 TraesCS4A01G465400 chr4A 86.486 259 22 4 1503 1760 729961502 729961256 3.090000e-69 272.0
15 TraesCS4A01G465400 chr4A 85.932 263 22 8 1500 1760 730467164 730467413 1.440000e-67 267.0
16 TraesCS4A01G465400 chr4A 94.872 156 8 0 2283 2438 729008405 729008560 6.730000e-61 244.0
17 TraesCS4A01G465400 chr4A 92.949 156 11 0 2283 2438 728713575 728713420 6.780000e-56 228.0
18 TraesCS4A01G465400 chr4A 92.913 127 9 0 2283 2409 728970406 728970532 4.140000e-43 185.0
19 TraesCS4A01G465400 chr4A 95.652 92 1 2 679 767 728942600 728942509 7.030000e-31 145.0
20 TraesCS4A01G465400 chr4A 95.652 92 1 2 773 864 728942694 728942606 7.030000e-31 145.0
21 TraesCS4A01G465400 chr4A 100.000 31 0 0 471 501 730497784 730497814 9.420000e-05 58.4
22 TraesCS4A01G465400 chr4A 100.000 31 0 0 471 501 730523679 730523709 9.420000e-05 58.4
23 TraesCS4A01G465400 chr4A 100.000 31 0 0 471 501 730576998 730577028 9.420000e-05 58.4
24 TraesCS4A01G465400 chr4A 100.000 31 0 0 471 501 730629566 730629596 9.420000e-05 58.4
25 TraesCS4A01G465400 chrUn 95.000 600 24 5 1843 2438 417989888 417990485 0.000000e+00 937.0
26 TraesCS4A01G465400 chrUn 92.421 475 28 2 1288 1762 417989424 417989890 0.000000e+00 671.0
27 TraesCS4A01G465400 chrUn 92.025 163 9 4 1845 2004 330617696 330617535 2.440000e-55 226.0
28 TraesCS4A01G465400 chrUn 92.800 125 8 1 2315 2438 330616071 330615947 1.930000e-41 180.0
29 TraesCS4A01G465400 chr7D 89.024 574 47 5 950 1512 9166109 9165541 0.000000e+00 697.0
30 TraesCS4A01G465400 chr7D 89.062 448 37 7 1843 2286 9165352 9164913 1.650000e-151 545.0
31 TraesCS4A01G465400 chr7D 82.822 652 65 21 950 1592 9930113 9930726 7.670000e-150 540.0
32 TraesCS4A01G465400 chr7D 86.667 360 41 7 1931 2286 9943139 9943495 2.270000e-105 392.0
33 TraesCS4A01G465400 chr7D 95.833 96 1 3 1752 1844 343752023 343751928 4.200000e-33 152.0
34 TraesCS4A01G465400 chr7D 98.039 51 1 0 323 373 9166798 9166748 3.340000e-14 89.8
35 TraesCS4A01G465400 chr3A 100.000 85 0 0 1760 1844 388801120 388801204 9.020000e-35 158.0
36 TraesCS4A01G465400 chr3A 95.833 96 4 0 1750 1845 726303915 726304010 3.250000e-34 156.0
37 TraesCS4A01G465400 chr3A 89.189 111 7 5 1736 1846 9825575 9825680 1.520000e-27 134.0
38 TraesCS4A01G465400 chr1B 93.204 103 7 0 1744 1846 543485660 543485762 4.200000e-33 152.0
39 TraesCS4A01G465400 chr3B 95.745 94 3 1 1752 1845 146948347 146948439 1.510000e-32 150.0
40 TraesCS4A01G465400 chr3B 91.803 61 4 1 703 762 432332971 432333031 1.550000e-12 84.2
41 TraesCS4A01G465400 chr1D 94.737 95 5 0 1757 1851 481342892 481342986 5.430000e-32 148.0
42 TraesCS4A01G465400 chr1D 95.238 63 2 1 801 862 128532115 128532053 5.550000e-17 99.0
43 TraesCS4A01G465400 chr1D 90.000 70 4 3 705 771 128532115 128532046 1.200000e-13 87.9
44 TraesCS4A01G465400 chr1D 94.737 57 2 1 706 761 318090035 318090091 1.200000e-13 87.9
45 TraesCS4A01G465400 chr2A 95.604 91 4 0 1755 1845 88119760 88119670 1.950000e-31 147.0
46 TraesCS4A01G465400 chr2A 95.082 61 3 0 799 859 554133149 554133089 2.000000e-16 97.1
47 TraesCS4A01G465400 chr7A 92.233 103 7 1 1743 1844 209163949 209163847 7.030000e-31 145.0
48 TraesCS4A01G465400 chr7A 81.977 172 26 4 26 196 509138975 509139142 9.090000e-30 141.0
49 TraesCS4A01G465400 chr7B 84.459 148 20 3 49 195 450279435 450279580 2.530000e-30 143.0
50 TraesCS4A01G465400 chr6B 84.459 148 20 3 49 195 260118405 260118550 2.530000e-30 143.0
51 TraesCS4A01G465400 chr5B 84.459 148 20 3 49 195 604227853 604227708 2.530000e-30 143.0
52 TraesCS4A01G465400 chr5B 95.161 62 3 0 799 860 371270611 371270672 5.550000e-17 99.0
53 TraesCS4A01G465400 chr6A 81.871 171 26 4 26 195 14658054 14658220 3.270000e-29 139.0
54 TraesCS4A01G465400 chr6A 93.333 60 3 1 703 761 595071450 595071509 1.200000e-13 87.9
55 TraesCS4A01G465400 chr3D 81.871 171 26 4 26 195 420484410 420484244 3.270000e-29 139.0
56 TraesCS4A01G465400 chr3D 96.721 61 2 0 799 859 569803741 569803801 4.290000e-18 102.0
57 TraesCS4A01G465400 chr3D 95.000 60 3 0 802 861 12881714 12881655 7.180000e-16 95.3
58 TraesCS4A01G465400 chr3D 90.909 66 5 1 703 767 327839049 327838984 1.200000e-13 87.9
59 TraesCS4A01G465400 chr3D 94.737 57 2 1 706 761 447974872 447974928 1.200000e-13 87.9
60 TraesCS4A01G465400 chr4B 83.784 148 21 3 49 195 455976769 455976624 1.180000e-28 137.0
61 TraesCS4A01G465400 chr5D 80.588 170 30 2 26 195 430533810 430533976 7.080000e-26 128.0
62 TraesCS4A01G465400 chr5D 92.424 66 5 0 799 864 422439797 422439732 7.180000e-16 95.3
63 TraesCS4A01G465400 chr5D 89.552 67 6 1 703 768 422439797 422439731 1.550000e-12 84.2
64 TraesCS4A01G465400 chr2D 80.702 171 28 4 26 195 433684503 433684337 7.080000e-26 128.0
65 TraesCS4A01G465400 chr2D 93.750 64 4 0 799 862 188886111 188886174 2.000000e-16 97.1
66 TraesCS4A01G465400 chr2D 94.737 57 2 1 706 761 44084094 44084038 1.200000e-13 87.9
67 TraesCS4A01G465400 chr5A 93.750 64 4 0 799 862 660190676 660190739 2.000000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G465400 chr4A 728940935 728943372 2437 True 1597.666667 4503 97.101333 1 2438 3 chr4A.!!$R5 2437
1 TraesCS4A01G465400 chr4A 730523679 730525583 1904 False 679.800000 1044 94.979667 471 2438 3 chr4A.!!$F6 1967
2 TraesCS4A01G465400 chr4A 730576998 730578902 1904 False 677.800000 1033 94.954667 471 2438 3 chr4A.!!$F7 1967
3 TraesCS4A01G465400 chr4A 730497784 730499688 1904 False 675.800000 1027 94.914333 471 2438 3 chr4A.!!$F5 1967
4 TraesCS4A01G465400 chr4A 730629566 730631470 1904 False 675.800000 1027 94.914333 471 2438 3 chr4A.!!$F8 1967
5 TraesCS4A01G465400 chr4A 729307460 729308065 605 True 420.000000 420 79.439000 1122 1761 1 chr4A.!!$R2 639
6 TraesCS4A01G465400 chr4A 728970406 728974679 4273 False 373.000000 525 92.112000 1356 2409 3 chr4A.!!$F4 1053
7 TraesCS4A01G465400 chrUn 417989424 417990485 1061 False 804.000000 937 93.710500 1288 2438 2 chrUn.!!$F1 1150
8 TraesCS4A01G465400 chrUn 330615947 330617696 1749 True 203.000000 226 92.412500 1845 2438 2 chrUn.!!$R1 593
9 TraesCS4A01G465400 chr7D 9930113 9930726 613 False 540.000000 540 82.822000 950 1592 1 chr7D.!!$F1 642
10 TraesCS4A01G465400 chr7D 9164913 9166798 1885 True 443.933333 697 92.041667 323 2286 3 chr7D.!!$R2 1963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 528 0.109179 TACACATGTCCACGTACGGC 60.109 55.0 21.06 7.29 0.00 5.68 F
883 1080 0.303796 CGCTGCTATGCACACAGATG 59.696 55.0 14.76 4.34 33.79 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1269 1619 1.669440 GGCACCGTGGAAGTCACTA 59.331 57.895 0.0 0.0 43.94 2.74 R
1832 4085 1.971357 CCTGTTGTGTACTCCCTCTGT 59.029 52.381 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.305709 TGGACAACAGAAGCCGAAG 57.694 52.632 0.00 0.00 0.00 3.79
23 24 1.134220 TGGACAACAGAAGCCGAAGTT 60.134 47.619 0.00 0.00 0.00 2.66
25 26 2.737252 GGACAACAGAAGCCGAAGTTAG 59.263 50.000 0.00 0.00 0.00 2.34
27 28 1.464997 CAACAGAAGCCGAAGTTAGCC 59.535 52.381 0.00 0.00 0.00 3.93
28 29 0.685097 ACAGAAGCCGAAGTTAGCCA 59.315 50.000 0.00 0.00 0.00 4.75
31 32 2.749621 CAGAAGCCGAAGTTAGCCAAAT 59.250 45.455 0.00 0.00 0.00 2.32
33 34 4.394920 CAGAAGCCGAAGTTAGCCAAATAA 59.605 41.667 0.00 0.00 0.00 1.40
34 35 4.636206 AGAAGCCGAAGTTAGCCAAATAAG 59.364 41.667 0.00 0.00 0.00 1.73
35 36 2.683362 AGCCGAAGTTAGCCAAATAAGC 59.317 45.455 0.00 0.00 0.00 3.09
36 37 2.223502 GCCGAAGTTAGCCAAATAAGCC 60.224 50.000 0.00 0.00 0.00 4.35
37 38 2.357952 CCGAAGTTAGCCAAATAAGCCC 59.642 50.000 0.00 0.00 0.00 5.19
38 39 2.031683 CGAAGTTAGCCAAATAAGCCCG 59.968 50.000 0.00 0.00 0.00 6.13
39 40 2.052782 AGTTAGCCAAATAAGCCCGG 57.947 50.000 0.00 0.00 0.00 5.73
40 41 0.384309 GTTAGCCAAATAAGCCCGGC 59.616 55.000 0.00 0.00 45.23 6.13
41 42 0.753848 TTAGCCAAATAAGCCCGGCC 60.754 55.000 5.55 0.00 46.08 6.13
42 43 1.927569 TAGCCAAATAAGCCCGGCCA 61.928 55.000 5.55 0.00 46.08 5.36
43 44 2.355193 GCCAAATAAGCCCGGCCAA 61.355 57.895 5.55 0.00 38.67 4.52
45 46 1.515487 CAAATAAGCCCGGCCAACC 59.485 57.895 5.55 0.00 0.00 3.77
46 47 1.077625 AAATAAGCCCGGCCAACCA 59.922 52.632 5.55 0.00 34.57 3.67
48 49 0.543174 AATAAGCCCGGCCAACCAAA 60.543 50.000 5.55 0.00 34.57 3.28
50 51 4.994756 AGCCCGGCCAACCAAAGG 62.995 66.667 5.55 0.00 34.57 3.11
62 63 2.576832 CCAAAGGCTGGCCCACAAG 61.577 63.158 8.11 0.00 38.76 3.16
64 65 3.754586 AAAGGCTGGCCCACAAGCA 62.755 57.895 14.21 0.00 36.58 3.91
65 66 4.982701 AGGCTGGCCCACAAGCAC 62.983 66.667 14.21 4.54 36.58 4.40
73 74 4.332637 CCACAAGCACGCTGGCAC 62.333 66.667 0.00 0.00 35.83 5.01
114 115 2.281622 CACGGGTTAAACGGGCCA 60.282 61.111 4.39 0.00 35.23 5.36
115 116 1.676303 CACGGGTTAAACGGGCCAT 60.676 57.895 4.39 0.00 35.23 4.40
116 117 1.676303 ACGGGTTAAACGGGCCATG 60.676 57.895 4.39 0.00 35.23 3.66
117 118 2.889617 GGGTTAAACGGGCCATGC 59.110 61.111 4.39 0.00 0.00 4.06
145 146 4.684134 GCACACCCTGGGCCATGT 62.684 66.667 14.08 5.95 41.97 3.21
146 147 2.118076 CACACCCTGGGCCATGTT 59.882 61.111 14.08 0.00 0.00 2.71
148 149 1.533753 ACACCCTGGGCCATGTTTG 60.534 57.895 14.08 6.40 0.00 2.93
149 150 2.120274 ACCCTGGGCCATGTTTGG 59.880 61.111 14.08 3.79 46.66 3.28
150 151 2.684655 CCCTGGGCCATGTTTGGG 60.685 66.667 12.94 12.94 43.84 4.12
159 160 0.532115 CCATGTTTGGGCTGTTAGGC 59.468 55.000 0.00 0.00 39.56 3.93
161 162 1.203052 CATGTTTGGGCTGTTAGGCTG 59.797 52.381 0.00 0.00 41.09 4.85
162 163 0.476338 TGTTTGGGCTGTTAGGCTGA 59.524 50.000 0.00 0.00 41.09 4.26
163 164 1.168714 GTTTGGGCTGTTAGGCTGAG 58.831 55.000 0.00 0.00 41.09 3.35
164 165 0.609131 TTTGGGCTGTTAGGCTGAGC 60.609 55.000 0.00 0.00 41.09 4.26
165 166 1.778017 TTGGGCTGTTAGGCTGAGCA 61.778 55.000 6.82 3.11 41.09 4.26
166 167 1.746991 GGGCTGTTAGGCTGAGCAC 60.747 63.158 6.82 8.87 41.09 4.40
167 168 2.103042 GGCTGTTAGGCTGAGCACG 61.103 63.158 6.82 0.00 37.85 5.34
168 169 2.744768 GCTGTTAGGCTGAGCACGC 61.745 63.158 6.82 0.93 32.70 5.34
169 170 2.432456 TGTTAGGCTGAGCACGCG 60.432 61.111 6.82 3.53 0.00 6.01
171 172 4.451150 TTAGGCTGAGCACGCGGG 62.451 66.667 12.47 7.92 0.00 6.13
176 177 4.880537 CTGAGCACGCGGGCTAGG 62.881 72.222 39.27 27.11 45.99 3.02
186 187 4.208686 GGGCTAGGCTCGACACGG 62.209 72.222 16.80 0.00 0.00 4.94
187 188 4.874977 GGCTAGGCTCGACACGGC 62.875 72.222 9.46 0.00 0.00 5.68
193 194 4.814294 GCTCGACACGGCCCGATT 62.814 66.667 11.71 0.00 34.08 3.34
195 196 1.588139 CTCGACACGGCCCGATTAC 60.588 63.158 11.71 0.00 34.08 1.89
196 197 2.584143 CGACACGGCCCGATTACC 60.584 66.667 11.71 0.00 0.00 2.85
197 198 2.202974 GACACGGCCCGATTACCC 60.203 66.667 11.71 0.00 0.00 3.69
198 199 2.686106 ACACGGCCCGATTACCCT 60.686 61.111 11.71 0.00 0.00 4.34
200 201 3.476419 ACGGCCCGATTACCCTGG 61.476 66.667 11.71 0.00 0.00 4.45
201 202 4.929707 CGGCCCGATTACCCTGGC 62.930 72.222 0.00 0.00 43.26 4.85
202 203 3.489513 GGCCCGATTACCCTGGCT 61.490 66.667 0.00 0.00 43.50 4.75
205 206 0.250338 GCCCGATTACCCTGGCTAAG 60.250 60.000 0.00 0.00 40.77 2.18
206 207 0.250338 CCCGATTACCCTGGCTAAGC 60.250 60.000 0.00 0.00 0.00 3.09
208 209 1.141053 CCGATTACCCTGGCTAAGCTT 59.859 52.381 3.48 3.48 0.00 3.74
209 210 2.367567 CCGATTACCCTGGCTAAGCTTA 59.632 50.000 5.94 5.94 0.00 3.09
212 213 4.021016 CGATTACCCTGGCTAAGCTTATCT 60.021 45.833 6.64 0.00 0.00 1.98
213 214 4.957684 TTACCCTGGCTAAGCTTATCTC 57.042 45.455 6.64 0.62 0.00 2.75
214 215 3.053359 ACCCTGGCTAAGCTTATCTCT 57.947 47.619 6.64 0.00 0.00 3.10
216 217 3.389656 ACCCTGGCTAAGCTTATCTCTTC 59.610 47.826 6.64 0.00 0.00 2.87
217 218 3.553922 CCCTGGCTAAGCTTATCTCTTCG 60.554 52.174 6.64 0.00 0.00 3.79
218 219 3.319405 CCTGGCTAAGCTTATCTCTTCGA 59.681 47.826 6.64 0.00 0.00 3.71
220 221 3.319405 TGGCTAAGCTTATCTCTTCGAGG 59.681 47.826 6.64 0.00 0.00 4.63
221 222 3.313690 GCTAAGCTTATCTCTTCGAGGC 58.686 50.000 6.64 0.00 0.00 4.70
222 223 2.500509 AAGCTTATCTCTTCGAGGCG 57.499 50.000 0.00 0.00 0.00 5.52
224 225 0.669077 GCTTATCTCTTCGAGGCGGA 59.331 55.000 0.00 0.00 0.00 5.54
225 226 1.271102 GCTTATCTCTTCGAGGCGGAT 59.729 52.381 7.65 7.65 0.00 4.18
226 227 2.924454 GCTTATCTCTTCGAGGCGGATG 60.924 54.545 11.11 0.79 0.00 3.51
228 229 0.757188 ATCTCTTCGAGGCGGATGGT 60.757 55.000 0.00 0.00 0.00 3.55
229 230 0.970937 TCTCTTCGAGGCGGATGGTT 60.971 55.000 0.00 0.00 0.00 3.67
230 231 0.528684 CTCTTCGAGGCGGATGGTTC 60.529 60.000 0.00 0.00 0.00 3.62
231 232 1.878522 CTTCGAGGCGGATGGTTCG 60.879 63.158 0.00 0.00 34.56 3.95
238 239 2.185350 CGGATGGTTCGCTCTGCT 59.815 61.111 0.00 0.00 0.00 4.24
239 240 1.880340 CGGATGGTTCGCTCTGCTC 60.880 63.158 0.00 0.00 0.00 4.26
240 241 1.522580 GGATGGTTCGCTCTGCTCC 60.523 63.158 0.00 0.00 0.00 4.70
241 242 1.522580 GATGGTTCGCTCTGCTCCC 60.523 63.158 0.00 0.00 0.00 4.30
242 243 2.932130 GATGGTTCGCTCTGCTCCCC 62.932 65.000 0.00 0.00 0.00 4.81
243 244 4.475135 GGTTCGCTCTGCTCCCCC 62.475 72.222 0.00 0.00 0.00 5.40
245 246 3.393970 TTCGCTCTGCTCCCCCTG 61.394 66.667 0.00 0.00 0.00 4.45
249 250 2.730524 GCTCTGCTCCCCCTGTCTC 61.731 68.421 0.00 0.00 0.00 3.36
250 251 2.363018 TCTGCTCCCCCTGTCTCG 60.363 66.667 0.00 0.00 0.00 4.04
251 252 4.154347 CTGCTCCCCCTGTCTCGC 62.154 72.222 0.00 0.00 0.00 5.03
265 266 3.695816 TGTCTCGCAGATAATGTCTTCG 58.304 45.455 0.00 0.00 43.60 3.79
272 273 6.914259 TCGCAGATAATGTCTTCGATATTCT 58.086 36.000 0.00 0.00 45.39 2.40
273 274 7.024171 TCGCAGATAATGTCTTCGATATTCTC 58.976 38.462 0.00 0.00 45.39 2.87
274 275 6.252441 CGCAGATAATGTCTTCGATATTCTCC 59.748 42.308 0.00 0.00 44.77 3.71
275 276 6.252441 GCAGATAATGTCTTCGATATTCTCCG 59.748 42.308 0.00 0.00 34.00 4.63
276 277 7.309177 CAGATAATGTCTTCGATATTCTCCGT 58.691 38.462 0.00 0.00 34.00 4.69
277 278 7.810282 CAGATAATGTCTTCGATATTCTCCGTT 59.190 37.037 0.00 0.00 34.00 4.44
278 279 8.024285 AGATAATGTCTTCGATATTCTCCGTTC 58.976 37.037 0.00 0.00 31.47 3.95
279 280 5.776173 ATGTCTTCGATATTCTCCGTTCT 57.224 39.130 0.00 0.00 0.00 3.01
281 282 6.879276 TGTCTTCGATATTCTCCGTTCTAT 57.121 37.500 0.00 0.00 0.00 1.98
282 283 6.669278 TGTCTTCGATATTCTCCGTTCTATG 58.331 40.000 0.00 0.00 0.00 2.23
283 284 5.569823 GTCTTCGATATTCTCCGTTCTATGC 59.430 44.000 0.00 0.00 0.00 3.14
284 285 5.240844 TCTTCGATATTCTCCGTTCTATGCA 59.759 40.000 0.00 0.00 0.00 3.96
285 286 5.644977 TCGATATTCTCCGTTCTATGCAT 57.355 39.130 3.79 3.79 0.00 3.96
286 287 5.402398 TCGATATTCTCCGTTCTATGCATG 58.598 41.667 10.16 0.00 0.00 4.06
288 289 2.988010 TTCTCCGTTCTATGCATGCT 57.012 45.000 20.33 7.07 0.00 3.79
289 290 2.515926 TCTCCGTTCTATGCATGCTC 57.484 50.000 20.33 1.84 0.00 4.26
290 291 2.034878 TCTCCGTTCTATGCATGCTCT 58.965 47.619 20.33 8.90 0.00 4.09
291 292 3.222603 TCTCCGTTCTATGCATGCTCTA 58.777 45.455 20.33 9.62 0.00 2.43
292 293 3.004839 TCTCCGTTCTATGCATGCTCTAC 59.995 47.826 20.33 8.80 0.00 2.59
293 294 2.959030 TCCGTTCTATGCATGCTCTACT 59.041 45.455 20.33 1.06 0.00 2.57
294 295 3.004839 TCCGTTCTATGCATGCTCTACTC 59.995 47.826 20.33 4.96 0.00 2.59
298 299 4.844998 TCTATGCATGCTCTACTCACTC 57.155 45.455 20.33 0.00 0.00 3.51
301 302 3.242549 TGCATGCTCTACTCACTCTTG 57.757 47.619 20.33 0.00 0.00 3.02
305 306 4.682859 GCATGCTCTACTCACTCTTGGAAT 60.683 45.833 11.37 0.00 0.00 3.01
306 307 4.462508 TGCTCTACTCACTCTTGGAATG 57.537 45.455 0.00 0.00 0.00 2.67
307 308 3.194062 GCTCTACTCACTCTTGGAATGC 58.806 50.000 0.00 0.00 0.00 3.56
308 309 3.443037 CTCTACTCACTCTTGGAATGCG 58.557 50.000 0.00 0.00 0.00 4.73
309 310 1.929836 CTACTCACTCTTGGAATGCGC 59.070 52.381 0.00 0.00 0.00 6.09
310 311 1.016130 ACTCACTCTTGGAATGCGCG 61.016 55.000 0.00 0.00 0.00 6.86
311 312 2.099062 CACTCTTGGAATGCGCGC 59.901 61.111 27.26 27.26 0.00 6.86
312 313 3.490759 ACTCTTGGAATGCGCGCG 61.491 61.111 28.44 28.44 0.00 6.86
313 314 4.876081 CTCTTGGAATGCGCGCGC 62.876 66.667 45.02 45.02 42.35 6.86
387 467 5.570344 CGCACGTACATATCCTATTCCTAG 58.430 45.833 0.00 0.00 0.00 3.02
390 470 6.675002 GCACGTACATATCCTATTCCTAGTCG 60.675 46.154 0.00 0.00 0.00 4.18
393 473 7.094890 ACGTACATATCCTATTCCTAGTCGTTG 60.095 40.741 0.00 0.00 0.00 4.10
394 474 7.118825 CGTACATATCCTATTCCTAGTCGTTGA 59.881 40.741 0.00 0.00 0.00 3.18
395 475 8.958506 GTACATATCCTATTCCTAGTCGTTGAT 58.041 37.037 0.00 0.00 0.00 2.57
396 476 8.423906 ACATATCCTATTCCTAGTCGTTGATT 57.576 34.615 0.00 0.00 0.00 2.57
397 477 9.529823 ACATATCCTATTCCTAGTCGTTGATTA 57.470 33.333 0.00 0.00 0.00 1.75
399 479 9.756571 ATATCCTATTCCTAGTCGTTGATTAGT 57.243 33.333 0.00 0.00 0.00 2.24
401 481 7.938715 TCCTATTCCTAGTCGTTGATTAGTTC 58.061 38.462 0.00 0.00 0.00 3.01
403 483 8.361139 CCTATTCCTAGTCGTTGATTAGTTCAT 58.639 37.037 0.00 0.00 33.34 2.57
404 484 9.186323 CTATTCCTAGTCGTTGATTAGTTCATG 57.814 37.037 0.00 0.00 33.34 3.07
405 485 6.525578 TCCTAGTCGTTGATTAGTTCATGT 57.474 37.500 0.00 0.00 33.34 3.21
406 486 6.561614 TCCTAGTCGTTGATTAGTTCATGTC 58.438 40.000 0.00 0.00 33.34 3.06
408 488 5.147330 AGTCGTTGATTAGTTCATGTCCA 57.853 39.130 0.00 0.00 33.34 4.02
409 489 5.547465 AGTCGTTGATTAGTTCATGTCCAA 58.453 37.500 0.00 0.00 33.34 3.53
410 490 6.173339 AGTCGTTGATTAGTTCATGTCCAAT 58.827 36.000 0.00 0.00 33.34 3.16
412 492 6.313905 GTCGTTGATTAGTTCATGTCCAATCT 59.686 38.462 0.00 0.00 33.34 2.40
413 493 6.313658 TCGTTGATTAGTTCATGTCCAATCTG 59.686 38.462 0.00 0.00 33.34 2.90
414 494 6.457392 CGTTGATTAGTTCATGTCCAATCTGG 60.457 42.308 0.00 0.00 34.59 3.86
415 495 6.065976 TGATTAGTTCATGTCCAATCTGGT 57.934 37.500 0.00 0.00 39.03 4.00
416 496 6.484288 TGATTAGTTCATGTCCAATCTGGTT 58.516 36.000 0.00 0.00 39.03 3.67
417 497 6.375174 TGATTAGTTCATGTCCAATCTGGTTG 59.625 38.462 0.00 0.00 39.03 3.77
418 498 2.821969 AGTTCATGTCCAATCTGGTTGC 59.178 45.455 0.00 0.00 39.03 4.17
419 499 2.821969 GTTCATGTCCAATCTGGTTGCT 59.178 45.455 0.00 0.00 39.03 3.91
420 500 3.159213 TCATGTCCAATCTGGTTGCTT 57.841 42.857 0.00 0.00 39.03 3.91
422 502 1.909700 TGTCCAATCTGGTTGCTTCC 58.090 50.000 0.00 0.00 39.03 3.46
423 503 1.144708 TGTCCAATCTGGTTGCTTCCA 59.855 47.619 0.00 1.02 39.03 3.53
436 516 1.870402 TGCTTCCAACACGTACACATG 59.130 47.619 0.00 0.00 0.00 3.21
438 518 2.096417 GCTTCCAACACGTACACATGTC 60.096 50.000 0.00 0.00 0.00 3.06
439 519 2.157834 TCCAACACGTACACATGTCC 57.842 50.000 0.00 0.00 0.00 4.02
442 522 1.191425 CAACACGTACACATGTCCACG 59.809 52.381 21.30 21.30 36.43 4.94
443 523 0.386476 ACACGTACACATGTCCACGT 59.614 50.000 22.37 22.37 41.99 4.49
444 524 1.608109 ACACGTACACATGTCCACGTA 59.392 47.619 25.63 10.88 40.09 3.57
445 525 1.980844 CACGTACACATGTCCACGTAC 59.019 52.381 25.63 19.03 40.09 3.67
447 527 1.621107 GTACACATGTCCACGTACGG 58.379 55.000 21.06 8.46 0.00 4.02
448 528 0.109179 TACACATGTCCACGTACGGC 60.109 55.000 21.06 7.29 0.00 5.68
449 529 1.080093 CACATGTCCACGTACGGCT 60.080 57.895 21.06 0.00 0.00 5.52
450 530 0.669318 CACATGTCCACGTACGGCTT 60.669 55.000 21.06 0.00 0.00 4.35
451 531 0.669318 ACATGTCCACGTACGGCTTG 60.669 55.000 21.06 15.39 0.00 4.01
454 534 0.598158 TGTCCACGTACGGCTTGTTC 60.598 55.000 21.06 4.93 0.00 3.18
455 535 0.598158 GTCCACGTACGGCTTGTTCA 60.598 55.000 21.06 0.00 0.00 3.18
456 536 0.319083 TCCACGTACGGCTTGTTCAT 59.681 50.000 21.06 0.00 0.00 2.57
457 537 0.719465 CCACGTACGGCTTGTTCATC 59.281 55.000 21.06 0.00 0.00 2.92
458 538 1.671850 CCACGTACGGCTTGTTCATCT 60.672 52.381 21.06 0.00 0.00 2.90
460 540 2.478894 CACGTACGGCTTGTTCATCTTT 59.521 45.455 21.06 0.00 0.00 2.52
463 543 4.148891 CGTACGGCTTGTTCATCTTTTTC 58.851 43.478 7.57 0.00 0.00 2.29
464 544 3.268013 ACGGCTTGTTCATCTTTTTCG 57.732 42.857 0.00 0.00 0.00 3.46
465 545 2.616842 ACGGCTTGTTCATCTTTTTCGT 59.383 40.909 0.00 0.00 0.00 3.85
467 547 4.148891 CGGCTTGTTCATCTTTTTCGTAC 58.851 43.478 0.00 0.00 0.00 3.67
468 548 4.084013 CGGCTTGTTCATCTTTTTCGTACT 60.084 41.667 0.00 0.00 0.00 2.73
469 549 5.147162 GGCTTGTTCATCTTTTTCGTACTG 58.853 41.667 0.00 0.00 0.00 2.74
501 581 2.139917 GCTTCCAACACGTACACATGA 58.860 47.619 0.00 0.00 0.00 3.07
503 583 3.649073 CTTCCAACACGTACACATGAGA 58.351 45.455 0.00 0.00 0.00 3.27
504 584 3.953712 TCCAACACGTACACATGAGAT 57.046 42.857 0.00 0.00 0.00 2.75
505 585 5.394224 TTCCAACACGTACACATGAGATA 57.606 39.130 0.00 0.00 0.00 1.98
506 586 5.394224 TCCAACACGTACACATGAGATAA 57.606 39.130 0.00 0.00 0.00 1.75
508 588 4.032900 CCAACACGTACACATGAGATAAGC 59.967 45.833 0.00 0.00 0.00 3.09
531 702 4.899239 GGCCGGCCTCAGTCGATG 62.899 72.222 38.76 0.00 46.55 3.84
538 709 1.142748 CCTCAGTCGATGGACAGGC 59.857 63.158 10.69 0.00 45.92 4.85
611 808 1.217882 GCATTAATCTCGACGGTGGG 58.782 55.000 0.00 0.00 0.00 4.61
620 817 2.029380 TCTCGACGGTGGGCATATTATG 60.029 50.000 0.00 0.00 0.00 1.90
675 872 2.992543 ACGTACACTCTCTACGTGTCTC 59.007 50.000 0.00 0.00 46.43 3.36
697 894 2.072298 GTCTGTCGACTGTACGGTACT 58.928 52.381 17.92 0.00 37.19 2.73
698 895 2.093467 GTCTGTCGACTGTACGGTACTC 59.907 54.545 17.92 8.37 37.19 2.59
700 897 2.341257 TGTCGACTGTACGGTACTCTC 58.659 52.381 17.92 11.43 0.00 3.20
702 899 2.348059 GTCGACTGTACGGTACTCTCTG 59.652 54.545 18.32 9.34 0.00 3.35
703 900 1.062294 CGACTGTACGGTACTCTCTGC 59.938 57.143 18.32 0.00 0.00 4.26
704 901 2.082231 GACTGTACGGTACTCTCTGCA 58.918 52.381 18.32 0.00 0.00 4.41
705 902 2.683867 GACTGTACGGTACTCTCTGCAT 59.316 50.000 18.32 0.00 0.00 3.96
706 903 3.090037 ACTGTACGGTACTCTCTGCATT 58.910 45.455 18.32 0.00 0.00 3.56
707 904 3.510360 ACTGTACGGTACTCTCTGCATTT 59.490 43.478 18.32 0.00 0.00 2.32
708 905 4.703575 ACTGTACGGTACTCTCTGCATTTA 59.296 41.667 18.32 0.00 0.00 1.40
709 906 5.163642 ACTGTACGGTACTCTCTGCATTTAG 60.164 44.000 18.32 6.17 0.00 1.85
710 907 4.945543 TGTACGGTACTCTCTGCATTTAGA 59.054 41.667 18.32 0.00 0.00 2.10
711 908 5.593095 TGTACGGTACTCTCTGCATTTAGAT 59.407 40.000 18.32 0.00 0.00 1.98
714 911 4.979197 CGGTACTCTCTGCATTTAGATCAC 59.021 45.833 0.00 0.00 0.00 3.06
716 913 6.017026 CGGTACTCTCTGCATTTAGATCACTA 60.017 42.308 0.00 0.00 0.00 2.74
756 953 9.651913 AACGTTTTTATATTAGTTTACGGAGGA 57.348 29.630 0.00 0.00 32.54 3.71
757 954 9.305925 ACGTTTTTATATTAGTTTACGGAGGAG 57.694 33.333 0.00 0.00 32.54 3.69
764 961 6.786967 ATTAGTTTACGGAGGAGTACATGT 57.213 37.500 2.69 2.69 0.00 3.21
765 962 4.715527 AGTTTACGGAGGAGTACATGTC 57.284 45.455 0.00 0.00 0.00 3.06
766 963 4.342359 AGTTTACGGAGGAGTACATGTCT 58.658 43.478 0.00 0.00 0.00 3.41
767 964 5.503927 AGTTTACGGAGGAGTACATGTCTA 58.496 41.667 0.00 0.00 0.00 2.59
768 965 5.589452 AGTTTACGGAGGAGTACATGTCTAG 59.411 44.000 0.00 0.00 0.00 2.43
769 966 3.928005 ACGGAGGAGTACATGTCTAGA 57.072 47.619 0.00 0.00 0.00 2.43
770 967 3.543665 ACGGAGGAGTACATGTCTAGAC 58.456 50.000 16.32 16.32 0.00 2.59
771 968 3.054582 ACGGAGGAGTACATGTCTAGACA 60.055 47.826 27.07 27.07 46.44 3.41
787 984 2.175530 GACATCTGTCGACTGTACGG 57.824 55.000 17.92 0.00 35.12 4.02
788 985 1.467734 GACATCTGTCGACTGTACGGT 59.532 52.381 17.92 7.16 35.12 4.83
789 986 2.674852 GACATCTGTCGACTGTACGGTA 59.325 50.000 17.92 0.00 35.12 4.02
790 987 2.417933 ACATCTGTCGACTGTACGGTAC 59.582 50.000 17.92 11.33 0.00 3.34
792 989 2.341257 TCTGTCGACTGTACGGTACTC 58.659 52.381 17.92 8.37 0.00 2.59
794 991 2.341257 TGTCGACTGTACGGTACTCTC 58.659 52.381 17.92 11.43 0.00 3.20
796 993 2.602660 GTCGACTGTACGGTACTCTCTC 59.397 54.545 18.32 7.24 0.00 3.20
798 995 2.604011 CGACTGTACGGTACTCTCTCTG 59.396 54.545 18.32 0.00 0.00 3.35
799 996 2.352342 GACTGTACGGTACTCTCTCTGC 59.648 54.545 18.32 0.00 0.00 4.26
802 999 3.353557 TGTACGGTACTCTCTCTGCATT 58.646 45.455 18.32 0.00 0.00 3.56
803 1000 3.762288 TGTACGGTACTCTCTCTGCATTT 59.238 43.478 18.32 0.00 0.00 2.32
804 1001 4.945543 TGTACGGTACTCTCTCTGCATTTA 59.054 41.667 18.32 0.00 0.00 1.40
805 1002 4.640789 ACGGTACTCTCTCTGCATTTAG 57.359 45.455 0.00 0.00 0.00 1.85
806 1003 4.270834 ACGGTACTCTCTCTGCATTTAGA 58.729 43.478 0.00 0.00 0.00 2.10
807 1004 4.890581 ACGGTACTCTCTCTGCATTTAGAT 59.109 41.667 0.00 0.00 0.00 1.98
808 1005 5.009210 ACGGTACTCTCTCTGCATTTAGATC 59.991 44.000 0.00 0.00 0.00 2.75
809 1006 5.009110 CGGTACTCTCTCTGCATTTAGATCA 59.991 44.000 0.00 0.00 0.00 2.92
810 1007 6.212955 GGTACTCTCTCTGCATTTAGATCAC 58.787 44.000 0.00 0.00 0.00 3.06
854 1051 8.758715 CGTTTTTATATTAGTTTACGGAGGGAG 58.241 37.037 0.00 0.00 0.00 4.30
864 1061 1.765230 ACGGAGGGAGTACATGTCTC 58.235 55.000 0.00 9.09 0.00 3.36
871 1068 1.676529 GGAGTACATGTCTCGCTGCTA 59.323 52.381 0.00 0.00 33.26 3.49
880 1077 0.459063 TCTCGCTGCTATGCACACAG 60.459 55.000 7.84 7.84 33.79 3.66
883 1080 0.303796 CGCTGCTATGCACACAGATG 59.696 55.000 14.76 4.34 33.79 2.90
884 1081 1.376543 GCTGCTATGCACACAGATGT 58.623 50.000 14.76 0.00 40.80 3.06
885 1082 1.329906 GCTGCTATGCACACAGATGTC 59.670 52.381 14.76 0.00 36.72 3.06
888 1085 4.049869 CTGCTATGCACACAGATGTCTAG 58.950 47.826 6.61 0.00 36.72 2.43
891 1175 2.375173 TGCACACAGATGTCTAGCTG 57.625 50.000 0.00 0.00 45.62 4.24
893 1177 1.405256 GCACACAGATGTCTAGCTGCT 60.405 52.381 7.57 7.57 44.02 4.24
895 1179 2.928757 CACACAGATGTCTAGCTGCTTC 59.071 50.000 7.79 0.00 44.02 3.86
942 1236 2.653726 TCAATCTTTGTGTGCCACTGT 58.346 42.857 0.00 0.00 35.11 3.55
971 1302 1.678627 TCTCTCTAGCTCGATTGCACC 59.321 52.381 0.00 0.00 34.99 5.01
976 1307 0.459899 TAGCTCGATTGCACCATCGT 59.540 50.000 17.76 4.61 40.76 3.73
1000 1339 2.734591 CTAGCTAATGGGCGGCGA 59.265 61.111 12.98 0.00 37.29 5.54
1029 1368 1.295423 GCTGCCCAACCTCGTCTTA 59.705 57.895 0.00 0.00 0.00 2.10
1089 1431 4.937431 GCCTGCATCGGCTACCCC 62.937 72.222 9.66 0.00 46.63 4.95
1093 1435 2.895372 GCATCGGCTACCCCAACG 60.895 66.667 0.00 0.00 36.96 4.10
1134 1484 4.974721 CACCACCACCACCAGGGC 62.975 72.222 0.00 0.00 42.05 5.19
1269 1619 2.672996 GGATGCGTGGTGTGCCTT 60.673 61.111 0.00 0.00 35.27 4.35
1290 1640 4.980805 GACTTCCACGGTGCCGCA 62.981 66.667 10.87 0.00 44.19 5.69
1625 3872 4.595350 GCCCCTCCTTTGTAGAGATTATCT 59.405 45.833 0.00 0.00 42.47 1.98
1698 3951 7.639113 TGGTTAATTTGGATTTCGCTCTAAT 57.361 32.000 0.00 0.00 0.00 1.73
1699 3952 7.479980 TGGTTAATTTGGATTTCGCTCTAATG 58.520 34.615 0.00 0.00 0.00 1.90
1700 3953 6.918022 GGTTAATTTGGATTTCGCTCTAATGG 59.082 38.462 0.00 0.00 0.00 3.16
1701 3954 7.416326 GGTTAATTTGGATTTCGCTCTAATGGT 60.416 37.037 0.00 0.00 0.00 3.55
1702 3955 5.757850 ATTTGGATTTCGCTCTAATGGTC 57.242 39.130 0.00 0.00 0.00 4.02
1703 3956 4.487714 TTGGATTTCGCTCTAATGGTCT 57.512 40.909 0.00 0.00 0.00 3.85
1704 3957 5.607939 TTGGATTTCGCTCTAATGGTCTA 57.392 39.130 0.00 0.00 0.00 2.59
1705 3958 5.607939 TGGATTTCGCTCTAATGGTCTAA 57.392 39.130 0.00 0.00 0.00 2.10
1769 4022 9.635404 AGAATAAGAAGATATATACTCCCTCCG 57.365 37.037 0.00 0.00 0.00 4.63
1770 4023 9.411189 GAATAAGAAGATATATACTCCCTCCGT 57.589 37.037 0.00 0.00 0.00 4.69
1774 4027 8.578448 AGAAGATATATACTCCCTCCGTAAAC 57.422 38.462 0.00 0.00 0.00 2.01
1775 4028 8.392479 AGAAGATATATACTCCCTCCGTAAACT 58.608 37.037 0.00 0.00 0.00 2.66
1776 4029 9.678260 GAAGATATATACTCCCTCCGTAAACTA 57.322 37.037 0.00 0.00 0.00 2.24
1785 4038 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1786 4039 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1787 4040 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
1788 4041 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
1789 4042 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
1790 4043 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
1839 4092 9.490379 AACGCTCTTATATTAATTTACAGAGGG 57.510 33.333 21.96 21.96 42.53 4.30
1840 4093 8.867097 ACGCTCTTATATTAATTTACAGAGGGA 58.133 33.333 25.54 1.67 40.49 4.20
1841 4094 9.360093 CGCTCTTATATTAATTTACAGAGGGAG 57.640 37.037 20.74 5.24 40.49 4.30
1905 4162 5.877012 CAGGGGTGAATCTGTATATATGCAC 59.123 44.000 0.00 0.00 0.00 4.57
1906 4163 5.045578 AGGGGTGAATCTGTATATATGCACC 60.046 44.000 6.48 6.48 42.78 5.01
1919 4176 4.701956 ATATGCACCGAGAAAGGTTTTG 57.298 40.909 0.00 0.00 43.00 2.44
1920 4177 0.383949 TGCACCGAGAAAGGTTTTGC 59.616 50.000 0.00 0.00 43.00 3.68
2060 5453 4.112634 TCGTGTATTACATGCTCTCTTGC 58.887 43.478 10.60 0.00 35.17 4.01
2240 5634 9.419297 GACAGATGTGTAAAGTAGAATGTAACA 57.581 33.333 0.00 0.00 36.88 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.672356 CGGCTTCTGTTGTCCAGGG 60.672 63.158 0.00 0.00 41.83 4.45
1 2 0.250295 TTCGGCTTCTGTTGTCCAGG 60.250 55.000 0.00 0.00 41.83 4.45
2 3 1.151668 CTTCGGCTTCTGTTGTCCAG 58.848 55.000 0.00 0.00 42.97 3.86
3 4 0.468226 ACTTCGGCTTCTGTTGTCCA 59.532 50.000 0.00 0.00 0.00 4.02
4 5 1.594331 AACTTCGGCTTCTGTTGTCC 58.406 50.000 0.00 0.00 0.00 4.02
5 6 2.157863 GCTAACTTCGGCTTCTGTTGTC 59.842 50.000 0.00 0.00 0.00 3.18
6 7 2.143925 GCTAACTTCGGCTTCTGTTGT 58.856 47.619 0.00 0.00 0.00 3.32
7 8 1.464997 GGCTAACTTCGGCTTCTGTTG 59.535 52.381 0.00 0.00 0.00 3.33
10 11 1.808411 TTGGCTAACTTCGGCTTCTG 58.192 50.000 0.00 0.00 0.00 3.02
11 12 2.561478 TTTGGCTAACTTCGGCTTCT 57.439 45.000 0.00 0.00 0.00 2.85
13 14 3.128764 GCTTATTTGGCTAACTTCGGCTT 59.871 43.478 0.00 0.00 0.00 4.35
14 15 2.683362 GCTTATTTGGCTAACTTCGGCT 59.317 45.455 0.00 0.00 0.00 5.52
16 17 2.357952 GGGCTTATTTGGCTAACTTCGG 59.642 50.000 0.00 0.00 0.00 4.30
21 22 0.384309 GCCGGGCTTATTTGGCTAAC 59.616 55.000 12.87 0.00 44.16 2.34
23 24 1.152839 GGCCGGGCTTATTTGGCTA 60.153 57.895 22.87 0.00 46.72 3.93
25 26 2.355193 TTGGCCGGGCTTATTTGGC 61.355 57.895 29.87 0.00 46.82 4.52
27 28 1.254284 TGGTTGGCCGGGCTTATTTG 61.254 55.000 29.87 0.00 37.67 2.32
28 29 0.543174 TTGGTTGGCCGGGCTTATTT 60.543 50.000 29.87 0.00 37.67 1.40
31 32 1.605165 CTTTGGTTGGCCGGGCTTA 60.605 57.895 29.87 14.47 37.67 3.09
33 34 4.994756 CCTTTGGTTGGCCGGGCT 62.995 66.667 29.87 0.00 37.67 5.19
37 38 3.683937 CCAGCCTTTGGTTGGCCG 61.684 66.667 6.55 0.00 46.38 6.13
45 46 3.053828 CTTGTGGGCCAGCCTTTG 58.946 61.111 6.40 0.00 36.10 2.77
46 47 2.919328 GCTTGTGGGCCAGCCTTT 60.919 61.111 6.40 0.00 36.10 3.11
48 49 4.982701 GTGCTTGTGGGCCAGCCT 62.983 66.667 6.40 0.00 36.10 4.58
56 57 4.332637 GTGCCAGCGTGCTTGTGG 62.333 66.667 0.00 0.00 0.00 4.17
57 58 3.531920 CTGTGCCAGCGTGCTTGTG 62.532 63.158 0.00 0.00 0.00 3.33
90 91 2.979120 TTTAACCCGTGCCGTGCC 60.979 61.111 0.00 0.00 0.00 5.01
91 92 2.253154 GTTTAACCCGTGCCGTGC 59.747 61.111 0.00 0.00 0.00 5.34
92 93 2.552268 CGTTTAACCCGTGCCGTG 59.448 61.111 0.00 0.00 0.00 4.94
93 94 2.665854 CCGTTTAACCCGTGCCGT 60.666 61.111 0.00 0.00 0.00 5.68
94 95 3.424859 CCCGTTTAACCCGTGCCG 61.425 66.667 0.00 0.00 0.00 5.69
95 96 3.740397 GCCCGTTTAACCCGTGCC 61.740 66.667 0.00 0.00 0.00 5.01
96 97 3.740397 GGCCCGTTTAACCCGTGC 61.740 66.667 0.00 0.00 0.00 5.34
97 98 1.676303 ATGGCCCGTTTAACCCGTG 60.676 57.895 0.00 0.00 0.00 4.94
99 100 3.058783 GCATGGCCCGTTTAACCCG 62.059 63.158 0.00 0.00 0.00 5.28
100 101 2.717044 GGCATGGCCCGTTTAACCC 61.717 63.158 8.35 0.00 44.06 4.11
101 102 2.889617 GGCATGGCCCGTTTAACC 59.110 61.111 8.35 0.00 44.06 2.85
128 129 4.684134 ACATGGCCCAGGGTGTGC 62.684 66.667 7.55 0.00 0.00 4.57
134 135 3.393106 GCCCAAACATGGCCCAGG 61.393 66.667 0.00 0.00 43.33 4.45
140 141 0.532115 GCCTAACAGCCCAAACATGG 59.468 55.000 0.00 0.00 0.00 3.66
141 142 1.203052 CAGCCTAACAGCCCAAACATG 59.797 52.381 0.00 0.00 0.00 3.21
142 143 1.075374 TCAGCCTAACAGCCCAAACAT 59.925 47.619 0.00 0.00 0.00 2.71
143 144 0.476338 TCAGCCTAACAGCCCAAACA 59.524 50.000 0.00 0.00 0.00 2.83
145 146 0.609131 GCTCAGCCTAACAGCCCAAA 60.609 55.000 0.00 0.00 0.00 3.28
146 147 1.002134 GCTCAGCCTAACAGCCCAA 60.002 57.895 0.00 0.00 0.00 4.12
148 149 1.746991 GTGCTCAGCCTAACAGCCC 60.747 63.158 0.00 0.00 31.68 5.19
149 150 2.103042 CGTGCTCAGCCTAACAGCC 61.103 63.158 0.00 0.00 31.68 4.85
150 151 2.744768 GCGTGCTCAGCCTAACAGC 61.745 63.158 0.00 0.00 0.00 4.40
152 153 2.432456 CGCGTGCTCAGCCTAACA 60.432 61.111 0.00 0.00 0.00 2.41
153 154 3.188786 CCGCGTGCTCAGCCTAAC 61.189 66.667 4.92 0.00 0.00 2.34
154 155 4.451150 CCCGCGTGCTCAGCCTAA 62.451 66.667 4.92 0.00 0.00 2.69
159 160 4.880537 CCTAGCCCGCGTGCTCAG 62.881 72.222 21.97 15.11 41.68 3.35
167 168 4.874977 GTGTCGAGCCTAGCCCGC 62.875 72.222 0.00 0.00 0.00 6.13
168 169 4.554363 CGTGTCGAGCCTAGCCCG 62.554 72.222 0.00 0.00 0.00 6.13
169 170 4.208686 CCGTGTCGAGCCTAGCCC 62.209 72.222 0.00 0.00 0.00 5.19
171 172 4.874977 GGCCGTGTCGAGCCTAGC 62.875 72.222 6.18 0.00 46.14 3.42
176 177 3.420214 TAATCGGGCCGTGTCGAGC 62.420 63.158 27.32 0.00 38.83 5.03
177 178 1.588139 GTAATCGGGCCGTGTCGAG 60.588 63.158 27.32 0.00 38.83 4.04
180 181 2.202974 GGGTAATCGGGCCGTGTC 60.203 66.667 27.32 14.29 0.00 3.67
181 182 2.686106 AGGGTAATCGGGCCGTGT 60.686 61.111 27.32 17.15 0.00 4.49
182 183 2.203015 CAGGGTAATCGGGCCGTG 60.203 66.667 27.32 11.17 34.88 4.94
183 184 3.476419 CCAGGGTAATCGGGCCGT 61.476 66.667 27.32 10.46 0.00 5.68
184 185 4.929707 GCCAGGGTAATCGGGCCG 62.930 72.222 22.51 22.51 40.55 6.13
186 187 0.250338 CTTAGCCAGGGTAATCGGGC 60.250 60.000 11.64 0.00 46.77 6.13
187 188 0.250338 GCTTAGCCAGGGTAATCGGG 60.250 60.000 11.64 1.61 0.00 5.14
189 190 2.622064 AAGCTTAGCCAGGGTAATCG 57.378 50.000 11.64 2.66 0.00 3.34
190 191 5.247337 AGAGATAAGCTTAGCCAGGGTAATC 59.753 44.000 17.80 7.81 0.00 1.75
192 193 4.557705 AGAGATAAGCTTAGCCAGGGTAA 58.442 43.478 17.80 10.76 0.00 2.85
193 194 4.200447 AGAGATAAGCTTAGCCAGGGTA 57.800 45.455 17.80 0.00 0.00 3.69
195 196 3.553922 CGAAGAGATAAGCTTAGCCAGGG 60.554 52.174 17.80 1.08 0.00 4.45
196 197 3.319405 TCGAAGAGATAAGCTTAGCCAGG 59.681 47.826 17.80 4.17 0.00 4.45
197 198 4.576216 TCGAAGAGATAAGCTTAGCCAG 57.424 45.455 17.80 5.78 0.00 4.85
212 213 1.515954 GAACCATCCGCCTCGAAGA 59.484 57.895 0.00 0.00 0.00 2.87
213 214 1.878522 CGAACCATCCGCCTCGAAG 60.879 63.158 0.00 0.00 33.13 3.79
214 215 2.183300 CGAACCATCCGCCTCGAA 59.817 61.111 0.00 0.00 33.13 3.71
221 222 1.880340 GAGCAGAGCGAACCATCCG 60.880 63.158 0.00 0.00 0.00 4.18
222 223 1.522580 GGAGCAGAGCGAACCATCC 60.523 63.158 0.00 0.00 0.00 3.51
224 225 2.586792 GGGAGCAGAGCGAACCAT 59.413 61.111 0.00 0.00 0.00 3.55
225 226 3.706373 GGGGAGCAGAGCGAACCA 61.706 66.667 0.00 0.00 0.00 3.67
226 227 4.475135 GGGGGAGCAGAGCGAACC 62.475 72.222 0.00 0.00 0.00 3.62
228 229 3.393970 CAGGGGGAGCAGAGCGAA 61.394 66.667 0.00 0.00 0.00 4.70
229 230 4.704103 ACAGGGGGAGCAGAGCGA 62.704 66.667 0.00 0.00 0.00 4.93
230 231 4.154347 GACAGGGGGAGCAGAGCG 62.154 72.222 0.00 0.00 0.00 5.03
231 232 2.686835 AGACAGGGGGAGCAGAGC 60.687 66.667 0.00 0.00 0.00 4.09
232 233 2.422231 CGAGACAGGGGGAGCAGAG 61.422 68.421 0.00 0.00 0.00 3.35
234 235 4.154347 GCGAGACAGGGGGAGCAG 62.154 72.222 0.00 0.00 0.00 4.24
236 237 4.154347 CTGCGAGACAGGGGGAGC 62.154 72.222 0.00 0.00 43.19 4.70
250 251 6.252441 CGGAGAATATCGAAGACATTATCTGC 59.748 42.308 0.00 0.00 42.51 4.26
251 252 7.309177 ACGGAGAATATCGAAGACATTATCTG 58.691 38.462 11.29 11.29 42.51 2.90
252 253 7.455641 ACGGAGAATATCGAAGACATTATCT 57.544 36.000 0.00 0.00 42.51 1.98
254 255 7.887381 AGAACGGAGAATATCGAAGACATTAT 58.113 34.615 0.00 0.00 42.51 1.28
256 257 6.150396 AGAACGGAGAATATCGAAGACATT 57.850 37.500 0.00 0.00 42.51 2.71
258 259 6.669278 CATAGAACGGAGAATATCGAAGACA 58.331 40.000 0.00 0.00 42.51 3.41
260 261 5.240844 TGCATAGAACGGAGAATATCGAAGA 59.759 40.000 0.00 0.00 45.75 2.87
262 263 5.447624 TGCATAGAACGGAGAATATCGAA 57.552 39.130 0.00 0.00 0.00 3.71
263 264 5.402398 CATGCATAGAACGGAGAATATCGA 58.598 41.667 0.00 0.00 0.00 3.59
264 265 4.032217 GCATGCATAGAACGGAGAATATCG 59.968 45.833 14.21 0.00 0.00 2.92
265 266 5.174395 AGCATGCATAGAACGGAGAATATC 58.826 41.667 21.98 0.00 0.00 1.63
266 267 5.046735 AGAGCATGCATAGAACGGAGAATAT 60.047 40.000 21.98 0.00 0.00 1.28
267 268 4.281941 AGAGCATGCATAGAACGGAGAATA 59.718 41.667 21.98 0.00 0.00 1.75
271 272 2.522836 AGAGCATGCATAGAACGGAG 57.477 50.000 21.98 0.00 0.00 4.63
272 273 2.959030 AGTAGAGCATGCATAGAACGGA 59.041 45.455 21.98 0.00 0.00 4.69
273 274 3.243535 TGAGTAGAGCATGCATAGAACGG 60.244 47.826 21.98 0.00 0.00 4.44
274 275 3.733224 GTGAGTAGAGCATGCATAGAACG 59.267 47.826 21.98 0.00 0.00 3.95
275 276 4.942852 AGTGAGTAGAGCATGCATAGAAC 58.057 43.478 21.98 10.23 0.00 3.01
276 277 4.892345 AGAGTGAGTAGAGCATGCATAGAA 59.108 41.667 21.98 0.00 0.00 2.10
277 278 4.468713 AGAGTGAGTAGAGCATGCATAGA 58.531 43.478 21.98 0.00 0.00 1.98
278 279 4.852134 AGAGTGAGTAGAGCATGCATAG 57.148 45.455 21.98 0.00 0.00 2.23
279 280 4.202192 CCAAGAGTGAGTAGAGCATGCATA 60.202 45.833 21.98 9.58 0.00 3.14
281 282 2.093816 CCAAGAGTGAGTAGAGCATGCA 60.094 50.000 21.98 0.00 0.00 3.96
282 283 2.167281 TCCAAGAGTGAGTAGAGCATGC 59.833 50.000 10.51 10.51 0.00 4.06
283 284 4.462508 TTCCAAGAGTGAGTAGAGCATG 57.537 45.455 0.00 0.00 0.00 4.06
284 285 4.682859 GCATTCCAAGAGTGAGTAGAGCAT 60.683 45.833 0.00 0.00 0.00 3.79
285 286 3.368843 GCATTCCAAGAGTGAGTAGAGCA 60.369 47.826 0.00 0.00 0.00 4.26
286 287 3.194062 GCATTCCAAGAGTGAGTAGAGC 58.806 50.000 0.00 0.00 0.00 4.09
288 289 2.417379 GCGCATTCCAAGAGTGAGTAGA 60.417 50.000 0.30 0.00 0.00 2.59
289 290 1.929836 GCGCATTCCAAGAGTGAGTAG 59.070 52.381 0.30 0.00 0.00 2.57
290 291 1.735700 CGCGCATTCCAAGAGTGAGTA 60.736 52.381 8.75 0.00 0.00 2.59
291 292 1.016130 CGCGCATTCCAAGAGTGAGT 61.016 55.000 8.75 0.00 0.00 3.41
292 293 1.712081 CGCGCATTCCAAGAGTGAG 59.288 57.895 8.75 0.00 0.00 3.51
293 294 2.390599 GCGCGCATTCCAAGAGTGA 61.391 57.895 29.10 0.00 0.00 3.41
294 295 2.099062 GCGCGCATTCCAAGAGTG 59.901 61.111 29.10 0.00 0.00 3.51
312 313 3.348967 CTTGGCTTCGTACGTGCGC 62.349 63.158 21.69 15.11 0.00 6.09
313 314 2.769617 CTTGGCTTCGTACGTGCG 59.230 61.111 20.49 20.49 0.00 5.34
314 315 2.227968 CTGCTTGGCTTCGTACGTGC 62.228 60.000 16.05 19.20 0.00 5.34
315 316 1.781555 CTGCTTGGCTTCGTACGTG 59.218 57.895 16.05 10.61 0.00 4.49
317 318 2.740714 GGCTGCTTGGCTTCGTACG 61.741 63.158 9.53 9.53 38.32 3.67
318 319 1.639298 CTGGCTGCTTGGCTTCGTAC 61.639 60.000 0.00 0.00 42.34 3.67
320 321 2.670934 CTGGCTGCTTGGCTTCGT 60.671 61.111 0.00 0.00 42.34 3.85
321 322 4.112341 GCTGGCTGCTTGGCTTCG 62.112 66.667 9.31 0.00 42.34 3.79
368 448 6.981762 ACGACTAGGAATAGGATATGTACG 57.018 41.667 0.00 0.00 0.00 3.67
387 467 5.856126 TTGGACATGAACTAATCAACGAC 57.144 39.130 0.00 0.00 42.54 4.34
390 470 6.375455 ACCAGATTGGACATGAACTAATCAAC 59.625 38.462 22.99 8.44 40.96 3.18
393 473 6.678900 GCAACCAGATTGGACATGAACTAATC 60.679 42.308 17.90 17.90 40.96 1.75
394 474 5.126061 GCAACCAGATTGGACATGAACTAAT 59.874 40.000 0.00 2.84 40.96 1.73
395 475 4.458989 GCAACCAGATTGGACATGAACTAA 59.541 41.667 0.00 0.00 40.96 2.24
396 476 4.009675 GCAACCAGATTGGACATGAACTA 58.990 43.478 0.00 0.00 40.96 2.24
397 477 2.821969 GCAACCAGATTGGACATGAACT 59.178 45.455 0.00 0.00 40.96 3.01
398 478 2.821969 AGCAACCAGATTGGACATGAAC 59.178 45.455 0.00 0.00 40.96 3.18
399 479 3.159213 AGCAACCAGATTGGACATGAA 57.841 42.857 0.00 0.00 40.96 2.57
401 481 2.165030 GGAAGCAACCAGATTGGACATG 59.835 50.000 1.40 0.00 40.96 3.21
403 483 1.144708 TGGAAGCAACCAGATTGGACA 59.855 47.619 1.40 0.00 40.96 4.02
404 484 1.909700 TGGAAGCAACCAGATTGGAC 58.090 50.000 1.40 0.00 40.96 4.02
405 485 2.238521 GTTGGAAGCAACCAGATTGGA 58.761 47.619 1.40 0.00 40.96 3.53
406 486 1.962807 TGTTGGAAGCAACCAGATTGG 59.037 47.619 0.00 0.00 45.02 3.16
408 488 1.608590 CGTGTTGGAAGCAACCAGATT 59.391 47.619 0.00 0.00 41.19 2.40
409 489 1.238439 CGTGTTGGAAGCAACCAGAT 58.762 50.000 0.00 0.00 41.19 2.90
410 490 0.107410 ACGTGTTGGAAGCAACCAGA 60.107 50.000 0.00 0.00 41.19 3.86
412 492 1.301423 GTACGTGTTGGAAGCAACCA 58.699 50.000 0.00 0.00 38.24 3.67
413 493 1.003223 GTGTACGTGTTGGAAGCAACC 60.003 52.381 0.00 0.00 34.37 3.77
414 494 1.666700 TGTGTACGTGTTGGAAGCAAC 59.333 47.619 0.00 0.00 35.75 4.17
415 495 2.025589 TGTGTACGTGTTGGAAGCAA 57.974 45.000 0.00 0.00 0.00 3.91
416 496 1.870402 CATGTGTACGTGTTGGAAGCA 59.130 47.619 0.00 0.00 0.00 3.91
417 497 1.871039 ACATGTGTACGTGTTGGAAGC 59.129 47.619 0.00 0.00 43.01 3.86
418 498 2.478894 GGACATGTGTACGTGTTGGAAG 59.521 50.000 1.15 0.00 45.32 3.46
419 499 2.158943 TGGACATGTGTACGTGTTGGAA 60.159 45.455 1.15 0.00 45.32 3.53
420 500 1.413077 TGGACATGTGTACGTGTTGGA 59.587 47.619 1.15 0.00 45.32 3.53
422 502 1.191425 CGTGGACATGTGTACGTGTTG 59.809 52.381 18.38 0.00 45.32 3.33
423 503 1.202440 ACGTGGACATGTGTACGTGTT 60.202 47.619 26.75 10.36 46.55 3.32
425 505 3.188773 ACGTGGACATGTGTACGTG 57.811 52.632 26.75 8.60 46.55 4.49
428 508 1.621107 CCGTACGTGGACATGTGTAC 58.379 55.000 15.21 8.59 35.11 2.90
429 509 0.109179 GCCGTACGTGGACATGTGTA 60.109 55.000 15.21 0.00 0.00 2.90
430 510 1.373748 GCCGTACGTGGACATGTGT 60.374 57.895 15.21 0.00 0.00 3.72
431 511 0.669318 AAGCCGTACGTGGACATGTG 60.669 55.000 15.21 0.00 0.00 3.21
432 512 0.669318 CAAGCCGTACGTGGACATGT 60.669 55.000 15.21 0.00 0.00 3.21
433 513 0.669318 ACAAGCCGTACGTGGACATG 60.669 55.000 15.21 6.53 31.20 3.21
436 516 0.598158 TGAACAAGCCGTACGTGGAC 60.598 55.000 15.21 5.51 31.20 4.02
438 518 0.719465 GATGAACAAGCCGTACGTGG 59.281 55.000 15.21 0.29 31.20 4.94
439 519 1.710013 AGATGAACAAGCCGTACGTG 58.290 50.000 15.21 8.67 0.00 4.49
442 522 4.148891 CGAAAAAGATGAACAAGCCGTAC 58.851 43.478 0.00 0.00 0.00 3.67
443 523 3.810941 ACGAAAAAGATGAACAAGCCGTA 59.189 39.130 0.00 0.00 0.00 4.02
444 524 2.616842 ACGAAAAAGATGAACAAGCCGT 59.383 40.909 0.00 0.00 0.00 5.68
445 525 3.268013 ACGAAAAAGATGAACAAGCCG 57.732 42.857 0.00 0.00 0.00 5.52
446 526 5.147162 CAGTACGAAAAAGATGAACAAGCC 58.853 41.667 0.00 0.00 0.00 4.35
447 527 4.613031 GCAGTACGAAAAAGATGAACAAGC 59.387 41.667 0.00 0.00 0.00 4.01
448 528 5.147162 GGCAGTACGAAAAAGATGAACAAG 58.853 41.667 0.00 0.00 0.00 3.16
449 529 4.576873 TGGCAGTACGAAAAAGATGAACAA 59.423 37.500 0.00 0.00 0.00 2.83
450 530 4.130857 TGGCAGTACGAAAAAGATGAACA 58.869 39.130 0.00 0.00 0.00 3.18
451 531 4.742438 TGGCAGTACGAAAAAGATGAAC 57.258 40.909 0.00 0.00 0.00 3.18
454 534 3.189287 AGCTTGGCAGTACGAAAAAGATG 59.811 43.478 0.00 0.00 0.00 2.90
455 535 3.189287 CAGCTTGGCAGTACGAAAAAGAT 59.811 43.478 0.00 0.00 0.00 2.40
456 536 2.548057 CAGCTTGGCAGTACGAAAAAGA 59.452 45.455 0.00 0.00 0.00 2.52
457 537 2.350772 CCAGCTTGGCAGTACGAAAAAG 60.351 50.000 0.00 0.00 0.00 2.27
458 538 1.606668 CCAGCTTGGCAGTACGAAAAA 59.393 47.619 0.00 0.00 0.00 1.94
460 540 0.107831 ACCAGCTTGGCAGTACGAAA 59.892 50.000 0.00 0.00 42.67 3.46
463 543 1.868997 CAACCAGCTTGGCAGTACG 59.131 57.895 2.50 0.00 42.67 3.67
464 544 1.581447 GCAACCAGCTTGGCAGTAC 59.419 57.895 2.50 0.00 42.67 2.73
465 545 4.079446 GCAACCAGCTTGGCAGTA 57.921 55.556 2.50 0.00 42.67 2.74
620 817 3.050275 GTTGAGGCGTGACTGGGC 61.050 66.667 0.00 0.00 0.00 5.36
730 927 9.651913 TCCTCCGTAAACTAATATAAAAACGTT 57.348 29.630 0.00 0.00 0.00 3.99
731 928 9.305925 CTCCTCCGTAAACTAATATAAAAACGT 57.694 33.333 0.00 0.00 0.00 3.99
732 929 9.305925 ACTCCTCCGTAAACTAATATAAAAACG 57.694 33.333 0.00 0.00 0.00 3.60
738 935 9.578576 ACATGTACTCCTCCGTAAACTAATATA 57.421 33.333 0.00 0.00 0.00 0.86
739 936 8.474710 ACATGTACTCCTCCGTAAACTAATAT 57.525 34.615 0.00 0.00 0.00 1.28
742 939 5.948162 AGACATGTACTCCTCCGTAAACTAA 59.052 40.000 0.00 0.00 0.00 2.24
745 942 4.715527 AGACATGTACTCCTCCGTAAAC 57.284 45.455 0.00 0.00 0.00 2.01
746 943 5.587844 GTCTAGACATGTACTCCTCCGTAAA 59.412 44.000 18.20 0.00 0.00 2.01
747 944 5.121811 GTCTAGACATGTACTCCTCCGTAA 58.878 45.833 18.20 0.00 0.00 3.18
748 945 4.162888 TGTCTAGACATGTACTCCTCCGTA 59.837 45.833 21.74 0.00 36.21 4.02
749 946 3.054582 TGTCTAGACATGTACTCCTCCGT 60.055 47.826 21.74 0.00 36.21 4.69
750 947 3.542648 TGTCTAGACATGTACTCCTCCG 58.457 50.000 21.74 0.00 36.21 4.63
763 960 4.259890 CGTACAGTCGACAGATGTCTAGAC 60.260 50.000 19.50 16.32 42.66 2.59
764 961 3.864003 CGTACAGTCGACAGATGTCTAGA 59.136 47.826 19.50 0.00 42.66 2.43
765 962 3.001431 CCGTACAGTCGACAGATGTCTAG 59.999 52.174 19.50 8.19 42.66 2.43
766 963 2.934553 CCGTACAGTCGACAGATGTCTA 59.065 50.000 19.50 0.00 42.66 2.59
767 964 1.738350 CCGTACAGTCGACAGATGTCT 59.262 52.381 19.50 0.00 42.66 3.41
768 965 1.467734 ACCGTACAGTCGACAGATGTC 59.532 52.381 19.50 2.78 41.47 3.06
769 966 1.531423 ACCGTACAGTCGACAGATGT 58.469 50.000 19.50 15.66 0.00 3.06
770 967 2.676839 AGTACCGTACAGTCGACAGATG 59.323 50.000 19.50 10.09 0.00 2.90
771 968 2.935201 GAGTACCGTACAGTCGACAGAT 59.065 50.000 19.50 4.85 0.00 2.90
773 970 2.344950 AGAGTACCGTACAGTCGACAG 58.655 52.381 19.50 12.96 0.00 3.51
775 972 2.602660 GAGAGAGTACCGTACAGTCGAC 59.397 54.545 7.70 7.70 0.00 4.20
776 973 2.495270 AGAGAGAGTACCGTACAGTCGA 59.505 50.000 11.26 0.00 0.00 4.20
777 974 2.604011 CAGAGAGAGTACCGTACAGTCG 59.396 54.545 11.26 0.00 0.00 4.18
778 975 2.352342 GCAGAGAGAGTACCGTACAGTC 59.648 54.545 11.26 6.80 0.00 3.51
779 976 2.290134 TGCAGAGAGAGTACCGTACAGT 60.290 50.000 11.26 0.00 0.00 3.55
780 977 2.357075 TGCAGAGAGAGTACCGTACAG 58.643 52.381 11.26 0.00 0.00 2.74
781 978 2.484742 TGCAGAGAGAGTACCGTACA 57.515 50.000 11.26 0.00 0.00 2.90
782 979 4.373348 AAATGCAGAGAGAGTACCGTAC 57.627 45.455 0.00 0.00 0.00 3.67
783 980 5.434408 TCTAAATGCAGAGAGAGTACCGTA 58.566 41.667 0.00 0.00 0.00 4.02
785 982 4.902443 TCTAAATGCAGAGAGAGTACCG 57.098 45.455 0.00 0.00 0.00 4.02
787 984 7.038154 AGTGATCTAAATGCAGAGAGAGTAC 57.962 40.000 0.00 0.00 0.00 2.73
788 985 8.753497 TTAGTGATCTAAATGCAGAGAGAGTA 57.247 34.615 0.00 0.00 33.79 2.59
789 986 7.652524 TTAGTGATCTAAATGCAGAGAGAGT 57.347 36.000 0.00 0.00 33.79 3.24
826 1023 8.882736 CCCTCCGTAAACTAATATAAAAACGTT 58.117 33.333 0.00 0.00 0.00 3.99
829 1026 9.605275 ACTCCCTCCGTAAACTAATATAAAAAC 57.395 33.333 0.00 0.00 0.00 2.43
834 1031 9.017509 CATGTACTCCCTCCGTAAACTAATATA 57.982 37.037 0.00 0.00 0.00 0.86
835 1032 7.508296 ACATGTACTCCCTCCGTAAACTAATAT 59.492 37.037 0.00 0.00 0.00 1.28
836 1033 6.835488 ACATGTACTCCCTCCGTAAACTAATA 59.165 38.462 0.00 0.00 0.00 0.98
838 1035 5.018809 ACATGTACTCCCTCCGTAAACTAA 58.981 41.667 0.00 0.00 0.00 2.24
839 1036 4.603131 ACATGTACTCCCTCCGTAAACTA 58.397 43.478 0.00 0.00 0.00 2.24
840 1037 3.438183 ACATGTACTCCCTCCGTAAACT 58.562 45.455 0.00 0.00 0.00 2.66
842 1039 3.698040 GAGACATGTACTCCCTCCGTAAA 59.302 47.826 0.00 0.00 0.00 2.01
843 1040 3.285484 GAGACATGTACTCCCTCCGTAA 58.715 50.000 0.00 0.00 0.00 3.18
844 1041 2.744166 CGAGACATGTACTCCCTCCGTA 60.744 54.545 15.33 0.00 0.00 4.02
846 1043 0.663688 CGAGACATGTACTCCCTCCG 59.336 60.000 15.33 5.05 0.00 4.63
847 1044 0.386113 GCGAGACATGTACTCCCTCC 59.614 60.000 15.33 3.37 0.00 4.30
848 1045 1.066303 CAGCGAGACATGTACTCCCTC 59.934 57.143 15.33 9.57 0.00 4.30
849 1046 1.107114 CAGCGAGACATGTACTCCCT 58.893 55.000 15.33 11.05 0.00 4.20
850 1047 0.528684 GCAGCGAGACATGTACTCCC 60.529 60.000 15.33 9.47 0.00 4.30
854 1051 1.789464 GCATAGCAGCGAGACATGTAC 59.211 52.381 0.00 0.00 0.00 2.90
856 1053 0.176449 TGCATAGCAGCGAGACATGT 59.824 50.000 0.00 0.00 37.31 3.21
857 1054 0.580578 GTGCATAGCAGCGAGACATG 59.419 55.000 0.00 0.00 40.08 3.21
864 1061 0.303796 CATCTGTGTGCATAGCAGCG 59.696 55.000 9.38 1.95 40.08 5.18
871 1068 2.902523 CAGCTAGACATCTGTGTGCAT 58.097 47.619 0.00 0.00 39.09 3.96
880 1077 2.802774 GCAGAGGAAGCAGCTAGACATC 60.803 54.545 0.00 0.00 0.00 3.06
883 1080 0.823460 AGCAGAGGAAGCAGCTAGAC 59.177 55.000 0.00 0.00 35.19 2.59
884 1081 1.480137 GAAGCAGAGGAAGCAGCTAGA 59.520 52.381 0.00 0.00 36.07 2.43
885 1082 1.481772 AGAAGCAGAGGAAGCAGCTAG 59.518 52.381 0.00 0.00 36.07 3.42
888 1085 0.744057 GGAGAAGCAGAGGAAGCAGC 60.744 60.000 0.00 0.00 0.00 5.25
891 1175 3.836365 ATAAGGAGAAGCAGAGGAAGC 57.164 47.619 0.00 0.00 0.00 3.86
942 1236 2.877786 CGAGCTAGAGAGAGATGCTTGA 59.122 50.000 0.00 0.00 37.34 3.02
971 1302 2.871182 TTAGCTAGCTGGTCACGATG 57.129 50.000 27.68 0.00 0.00 3.84
976 1307 0.469917 GCCCATTAGCTAGCTGGTCA 59.530 55.000 27.68 3.83 0.00 4.02
1075 1417 2.270850 GTTGGGGTAGCCGATGCA 59.729 61.111 4.56 0.00 41.13 3.96
1110 1452 3.814906 TGGTGGTGGTGGTGGTGG 61.815 66.667 0.00 0.00 0.00 4.61
1111 1453 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
1134 1484 1.080974 GTGGTCGTCGTGGTACTGG 60.081 63.158 0.00 0.00 0.00 4.00
1269 1619 1.669440 GGCACCGTGGAAGTCACTA 59.331 57.895 0.00 0.00 43.94 2.74
1311 1661 2.031012 TGGAAGACGTGCTGGCAG 59.969 61.111 10.94 10.94 0.00 4.85
1698 3951 3.849574 TGGAGACCAAATCCATTAGACCA 59.150 43.478 0.00 0.00 41.96 4.02
1699 3952 4.503714 TGGAGACCAAATCCATTAGACC 57.496 45.455 0.00 0.00 41.96 3.85
1728 3981 8.992349 TCTTCTTATTCTTCATGGTCTATGGAA 58.008 33.333 0.00 0.00 37.39 3.53
1759 4012 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1760 4013 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
1761 4014 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
1762 4015 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
1763 4016 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
1764 4017 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
1813 4066 9.490379 CCCTCTGTAAATTAATATAAGAGCGTT 57.510 33.333 9.98 0.00 0.00 4.84
1814 4067 8.867097 TCCCTCTGTAAATTAATATAAGAGCGT 58.133 33.333 9.98 0.00 0.00 5.07
1815 4068 9.360093 CTCCCTCTGTAAATTAATATAAGAGCG 57.640 37.037 9.98 4.77 0.00 5.03
1823 4076 9.880157 GTTGTGTACTCCCTCTGTAAATTAATA 57.120 33.333 0.00 0.00 0.00 0.98
1824 4077 8.380099 TGTTGTGTACTCCCTCTGTAAATTAAT 58.620 33.333 0.00 0.00 0.00 1.40
1825 4078 7.737869 TGTTGTGTACTCCCTCTGTAAATTAA 58.262 34.615 0.00 0.00 0.00 1.40
1826 4079 7.305813 TGTTGTGTACTCCCTCTGTAAATTA 57.694 36.000 0.00 0.00 0.00 1.40
1827 4080 6.182507 TGTTGTGTACTCCCTCTGTAAATT 57.817 37.500 0.00 0.00 0.00 1.82
1828 4081 5.280011 CCTGTTGTGTACTCCCTCTGTAAAT 60.280 44.000 0.00 0.00 0.00 1.40
1829 4082 4.039973 CCTGTTGTGTACTCCCTCTGTAAA 59.960 45.833 0.00 0.00 0.00 2.01
1830 4083 3.576982 CCTGTTGTGTACTCCCTCTGTAA 59.423 47.826 0.00 0.00 0.00 2.41
1831 4084 3.162666 CCTGTTGTGTACTCCCTCTGTA 58.837 50.000 0.00 0.00 0.00 2.74
1832 4085 1.971357 CCTGTTGTGTACTCCCTCTGT 59.029 52.381 0.00 0.00 0.00 3.41
1833 4086 2.248248 TCCTGTTGTGTACTCCCTCTG 58.752 52.381 0.00 0.00 0.00 3.35
1834 4087 2.696526 TCCTGTTGTGTACTCCCTCT 57.303 50.000 0.00 0.00 0.00 3.69
1835 4088 3.764237 TTTCCTGTTGTGTACTCCCTC 57.236 47.619 0.00 0.00 0.00 4.30
1836 4089 4.225267 CCTATTTCCTGTTGTGTACTCCCT 59.775 45.833 0.00 0.00 0.00 4.20
1837 4090 4.019591 ACCTATTTCCTGTTGTGTACTCCC 60.020 45.833 0.00 0.00 0.00 4.30
1838 4091 5.161943 ACCTATTTCCTGTTGTGTACTCC 57.838 43.478 0.00 0.00 0.00 3.85
1839 4092 7.609056 TCTAACCTATTTCCTGTTGTGTACTC 58.391 38.462 0.00 0.00 0.00 2.59
1840 4093 7.549147 TCTAACCTATTTCCTGTTGTGTACT 57.451 36.000 0.00 0.00 0.00 2.73
1841 4094 8.788325 AATCTAACCTATTTCCTGTTGTGTAC 57.212 34.615 0.00 0.00 0.00 2.90
1919 4176 6.183360 ACAAAAGGAAACTAAAAGTGAGAGGC 60.183 38.462 0.00 0.00 42.68 4.70
1920 4177 7.334844 ACAAAAGGAAACTAAAAGTGAGAGG 57.665 36.000 0.00 0.00 42.68 3.69
2039 5432 3.865164 TGCAAGAGAGCATGTAATACACG 59.135 43.478 0.00 0.00 40.11 4.49
2060 5453 5.128205 TCTAGTCCAATCCAAATGCAGATG 58.872 41.667 0.00 0.00 0.00 2.90
2240 5634 7.011950 TGTTTAGTGATGTTTCAATGACGTTCT 59.988 33.333 0.00 0.00 32.48 3.01
2397 5827 3.938963 CACAATGTACCTGGCGTTTCTAT 59.061 43.478 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.