Multiple sequence alignment - TraesCS4A01G462200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G462200 chr4A 100.000 2533 0 0 1593 4125 726442746 726445278 0.000000e+00 4678.0
1 TraesCS4A01G462200 chr4A 100.000 1276 0 0 1 1276 726441154 726442429 0.000000e+00 2357.0
2 TraesCS4A01G462200 chr7A 87.143 2559 226 52 1629 4125 10906900 10904383 0.000000e+00 2808.0
3 TraesCS4A01G462200 chr7A 88.314 599 39 15 686 1276 10907494 10906919 0.000000e+00 689.0
4 TraesCS4A01G462200 chr7A 84.091 176 15 7 284 452 10907841 10907672 1.540000e-34 158.0
5 TraesCS4A01G462200 chr7A 78.205 156 11 5 449 590 10907643 10907497 1.230000e-10 78.7
6 TraesCS4A01G462200 chr7A 100.000 29 0 0 2 30 10907997 10907969 2.000000e-03 54.7
7 TraesCS4A01G462200 chr7D 92.933 1415 95 3 1629 3042 11430059 11428649 0.000000e+00 2054.0
8 TraesCS4A01G462200 chr7D 89.765 596 51 7 688 1276 11430670 11430078 0.000000e+00 754.0
9 TraesCS4A01G462200 chr7D 78.814 472 39 29 3694 4112 11427907 11427444 1.140000e-65 261.0
10 TraesCS4A01G462200 chr7D 92.632 95 3 1 590 684 406323129 406323219 2.590000e-27 134.0
11 TraesCS4A01G462200 chr7D 83.333 78 3 1 3346 3423 11428308 11428241 3.440000e-06 63.9
12 TraesCS4A01G462200 chr5A 89.438 587 58 4 2416 3001 292253977 292254560 0.000000e+00 737.0
13 TraesCS4A01G462200 chr5A 89.267 587 59 4 2416 3001 472472882 472472299 0.000000e+00 732.0
14 TraesCS4A01G462200 chr7B 93.750 96 4 2 589 684 743378577 743378670 4.300000e-30 143.0
15 TraesCS4A01G462200 chr7B 93.750 96 4 2 589 684 743380255 743380348 4.300000e-30 143.0
16 TraesCS4A01G462200 chr7B 92.708 96 5 2 589 684 743374786 743374879 2.000000e-28 137.0
17 TraesCS4A01G462200 chr7B 92.708 96 5 2 589 684 743376050 743376143 2.000000e-28 137.0
18 TraesCS4A01G462200 chr2B 92.784 97 7 0 590 686 146666542 146666638 1.550000e-29 141.0
19 TraesCS4A01G462200 chr6A 92.857 98 4 2 590 684 598572874 598572777 5.560000e-29 139.0
20 TraesCS4A01G462200 chr6A 89.286 112 7 4 578 685 598572765 598572875 7.190000e-28 135.0
21 TraesCS4A01G462200 chr6B 91.919 99 4 1 588 686 555212661 555212755 7.190000e-28 135.0
22 TraesCS4A01G462200 chr3A 100.000 54 0 0 223 276 638007491 638007544 2.620000e-17 100.0
23 TraesCS4A01G462200 chr1B 74.457 184 43 4 1889 2070 597554568 597554387 4.420000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G462200 chr4A 726441154 726445278 4124 False 3517.500 4678 100.00000 1 4125 2 chr4A.!!$F1 4124
1 TraesCS4A01G462200 chr7A 10904383 10907997 3614 True 757.680 2808 87.55060 2 4125 5 chr7A.!!$R1 4123
2 TraesCS4A01G462200 chr7D 11427444 11430670 3226 True 783.225 2054 86.21125 688 4112 4 chr7D.!!$R1 3424
3 TraesCS4A01G462200 chr5A 292253977 292254560 583 False 737.000 737 89.43800 2416 3001 1 chr5A.!!$F1 585
4 TraesCS4A01G462200 chr5A 472472299 472472882 583 True 732.000 732 89.26700 2416 3001 1 chr5A.!!$R1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 232 0.106967 GTTCAGAGGAATGGGGGAGC 60.107 60.0 0.0 0.0 35.05 4.70 F
285 290 0.111253 AAAACAGAGCTGGGGAGTGG 59.889 55.0 0.0 0.0 34.19 4.00 F
717 775 0.884704 TGCAAACTGAACGAGCCCTC 60.885 55.0 0.0 0.0 0.00 4.30 F
2360 2432 0.762461 GCAGAGGTGGGAGAGGCTAT 60.762 60.0 0.0 0.0 0.00 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 1939 1.397692 GAGTTGTAGGAGACGAGGTCG 59.602 57.143 0.00 0.0 46.33 4.79 R
2248 2320 1.179814 AGGTCTTCTCGTTCGGCACT 61.180 55.000 0.00 0.0 0.00 4.40 R
2386 2458 0.034756 TGGCGTACATTGTCAGCAGT 59.965 50.000 15.29 0.0 0.00 4.40 R
3736 4023 0.255890 GGGGCTTGCAGGATGACTTA 59.744 55.000 0.00 0.0 39.69 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.515602 ACATCTTGCTTGGAAACCTCT 57.484 42.857 0.00 0.00 0.00 3.69
31 32 4.640771 ACATCTTGCTTGGAAACCTCTA 57.359 40.909 0.00 0.00 0.00 2.43
32 33 4.583871 ACATCTTGCTTGGAAACCTCTAG 58.416 43.478 0.00 0.00 0.00 2.43
33 34 4.287067 ACATCTTGCTTGGAAACCTCTAGA 59.713 41.667 0.00 0.00 0.00 2.43
34 35 4.974645 TCTTGCTTGGAAACCTCTAGAA 57.025 40.909 0.00 0.00 0.00 2.10
35 36 5.505181 TCTTGCTTGGAAACCTCTAGAAT 57.495 39.130 0.00 0.00 0.00 2.40
36 37 5.880901 TCTTGCTTGGAAACCTCTAGAATT 58.119 37.500 0.00 0.00 0.00 2.17
37 38 6.306987 TCTTGCTTGGAAACCTCTAGAATTT 58.693 36.000 0.00 0.00 0.00 1.82
38 39 6.777580 TCTTGCTTGGAAACCTCTAGAATTTT 59.222 34.615 0.00 0.00 0.00 1.82
39 40 6.976934 TGCTTGGAAACCTCTAGAATTTTT 57.023 33.333 0.00 0.00 0.00 1.94
91 92 5.768333 GCAAATACATCTTGCTTGGAAAC 57.232 39.130 0.41 0.00 44.66 2.78
92 93 4.627035 GCAAATACATCTTGCTTGGAAACC 59.373 41.667 0.41 0.00 44.66 3.27
93 94 5.567423 GCAAATACATCTTGCTTGGAAACCT 60.567 40.000 0.41 0.00 44.66 3.50
94 95 5.904362 AATACATCTTGCTTGGAAACCTC 57.096 39.130 0.00 0.00 0.00 3.85
111 112 4.996788 ACCTCCAGATTTTGCATGAATC 57.003 40.909 12.88 12.88 34.48 2.52
118 119 3.436704 AGATTTTGCATGAATCGACGTGT 59.563 39.130 14.19 0.00 38.29 4.49
126 127 4.143200 GCATGAATCGACGTGTCTGTTAAA 60.143 41.667 0.00 0.00 0.00 1.52
127 128 5.613795 GCATGAATCGACGTGTCTGTTAAAA 60.614 40.000 0.00 0.00 0.00 1.52
129 130 4.446385 TGAATCGACGTGTCTGTTAAAAGG 59.554 41.667 0.00 0.00 0.00 3.11
130 131 2.129607 TCGACGTGTCTGTTAAAAGGC 58.870 47.619 0.00 0.00 0.00 4.35
131 132 2.132762 CGACGTGTCTGTTAAAAGGCT 58.867 47.619 0.00 0.00 0.00 4.58
132 133 3.004629 TCGACGTGTCTGTTAAAAGGCTA 59.995 43.478 0.00 0.00 0.00 3.93
133 134 3.120782 CGACGTGTCTGTTAAAAGGCTAC 59.879 47.826 0.00 0.00 0.00 3.58
149 150 4.273318 AGGCTACTTTGGTTGGAATGATC 58.727 43.478 0.00 0.00 0.00 2.92
158 159 2.239654 GGTTGGAATGATCAGTGGAGGA 59.760 50.000 0.00 0.00 0.00 3.71
162 163 4.335416 TGGAATGATCAGTGGAGGAAAAC 58.665 43.478 0.00 0.00 0.00 2.43
177 178 8.260114 GTGGAGGAAAACCATTGAATATGAAAT 58.740 33.333 0.00 0.00 39.69 2.17
215 220 4.946157 ACTATTCATGCCTTTGGTTCAGAG 59.054 41.667 0.00 0.00 0.00 3.35
224 229 0.704076 TTGGTTCAGAGGAATGGGGG 59.296 55.000 0.00 0.00 35.05 5.40
225 230 0.178846 TGGTTCAGAGGAATGGGGGA 60.179 55.000 0.00 0.00 35.05 4.81
226 231 0.548510 GGTTCAGAGGAATGGGGGAG 59.451 60.000 0.00 0.00 35.05 4.30
227 232 0.106967 GTTCAGAGGAATGGGGGAGC 60.107 60.000 0.00 0.00 35.05 4.70
228 233 1.626356 TTCAGAGGAATGGGGGAGCG 61.626 60.000 0.00 0.00 0.00 5.03
229 234 2.066393 CAGAGGAATGGGGGAGCGA 61.066 63.158 0.00 0.00 0.00 4.93
230 235 2.066999 AGAGGAATGGGGGAGCGAC 61.067 63.158 0.00 0.00 0.00 5.19
231 236 2.041265 AGGAATGGGGGAGCGACT 59.959 61.111 0.00 0.00 0.00 4.18
232 237 0.759436 GAGGAATGGGGGAGCGACTA 60.759 60.000 0.00 0.00 0.00 2.59
233 238 0.760945 AGGAATGGGGGAGCGACTAG 60.761 60.000 0.00 0.00 0.00 2.57
234 239 1.049289 GGAATGGGGGAGCGACTAGT 61.049 60.000 0.00 0.00 0.00 2.57
235 240 1.700955 GAATGGGGGAGCGACTAGTA 58.299 55.000 0.00 0.00 0.00 1.82
236 241 2.249139 GAATGGGGGAGCGACTAGTAT 58.751 52.381 0.00 0.00 0.00 2.12
237 242 3.428532 GAATGGGGGAGCGACTAGTATA 58.571 50.000 0.00 0.00 0.00 1.47
238 243 3.537795 ATGGGGGAGCGACTAGTATAA 57.462 47.619 0.00 0.00 0.00 0.98
239 244 3.317455 TGGGGGAGCGACTAGTATAAA 57.683 47.619 0.00 0.00 0.00 1.40
240 245 3.645434 TGGGGGAGCGACTAGTATAAAA 58.355 45.455 0.00 0.00 0.00 1.52
241 246 4.228824 TGGGGGAGCGACTAGTATAAAAT 58.771 43.478 0.00 0.00 0.00 1.82
242 247 4.282703 TGGGGGAGCGACTAGTATAAAATC 59.717 45.833 0.00 0.00 0.00 2.17
243 248 4.527427 GGGGGAGCGACTAGTATAAAATCT 59.473 45.833 0.00 0.00 0.00 2.40
244 249 5.471257 GGGGAGCGACTAGTATAAAATCTG 58.529 45.833 0.00 0.00 0.00 2.90
245 250 5.243283 GGGGAGCGACTAGTATAAAATCTGA 59.757 44.000 0.00 0.00 0.00 3.27
246 251 6.383415 GGGAGCGACTAGTATAAAATCTGAG 58.617 44.000 0.00 0.00 0.00 3.35
247 252 6.016108 GGGAGCGACTAGTATAAAATCTGAGT 60.016 42.308 0.00 0.00 0.00 3.41
248 253 6.858993 GGAGCGACTAGTATAAAATCTGAGTG 59.141 42.308 0.00 0.00 0.00 3.51
249 254 7.336161 AGCGACTAGTATAAAATCTGAGTGT 57.664 36.000 0.00 0.00 0.00 3.55
250 255 8.447924 AGCGACTAGTATAAAATCTGAGTGTA 57.552 34.615 0.00 0.00 0.00 2.90
251 256 8.561212 AGCGACTAGTATAAAATCTGAGTGTAG 58.439 37.037 0.00 0.00 0.00 2.74
252 257 8.344098 GCGACTAGTATAAAATCTGAGTGTAGT 58.656 37.037 0.00 0.00 0.00 2.73
253 258 9.653067 CGACTAGTATAAAATCTGAGTGTAGTG 57.347 37.037 0.00 0.00 0.00 2.74
256 261 9.239002 CTAGTATAAAATCTGAGTGTAGTGTGC 57.761 37.037 0.00 0.00 0.00 4.57
257 262 7.611770 AGTATAAAATCTGAGTGTAGTGTGCA 58.388 34.615 0.00 0.00 0.00 4.57
258 263 8.094548 AGTATAAAATCTGAGTGTAGTGTGCAA 58.905 33.333 0.00 0.00 0.00 4.08
259 264 7.744087 ATAAAATCTGAGTGTAGTGTGCAAA 57.256 32.000 0.00 0.00 0.00 3.68
260 265 6.449635 AAAATCTGAGTGTAGTGTGCAAAA 57.550 33.333 0.00 0.00 0.00 2.44
261 266 6.449635 AAATCTGAGTGTAGTGTGCAAAAA 57.550 33.333 0.00 0.00 0.00 1.94
262 267 6.639632 AATCTGAGTGTAGTGTGCAAAAAT 57.360 33.333 0.00 0.00 0.00 1.82
263 268 7.744087 AATCTGAGTGTAGTGTGCAAAAATA 57.256 32.000 0.00 0.00 0.00 1.40
264 269 6.785488 TCTGAGTGTAGTGTGCAAAAATAG 57.215 37.500 0.00 0.00 0.00 1.73
265 270 6.521162 TCTGAGTGTAGTGTGCAAAAATAGA 58.479 36.000 0.00 0.00 0.00 1.98
266 271 6.989759 TCTGAGTGTAGTGTGCAAAAATAGAA 59.010 34.615 0.00 0.00 0.00 2.10
267 272 7.497579 TCTGAGTGTAGTGTGCAAAAATAGAAA 59.502 33.333 0.00 0.00 0.00 2.52
268 273 7.990917 TGAGTGTAGTGTGCAAAAATAGAAAA 58.009 30.769 0.00 0.00 0.00 2.29
269 274 8.462811 TGAGTGTAGTGTGCAAAAATAGAAAAA 58.537 29.630 0.00 0.00 0.00 1.94
270 275 8.628882 AGTGTAGTGTGCAAAAATAGAAAAAC 57.371 30.769 0.00 0.00 0.00 2.43
271 276 8.247562 AGTGTAGTGTGCAAAAATAGAAAAACA 58.752 29.630 0.00 0.00 0.00 2.83
272 277 8.531530 GTGTAGTGTGCAAAAATAGAAAAACAG 58.468 33.333 0.00 0.00 0.00 3.16
273 278 8.462811 TGTAGTGTGCAAAAATAGAAAAACAGA 58.537 29.630 0.00 0.00 0.00 3.41
274 279 7.992180 AGTGTGCAAAAATAGAAAAACAGAG 57.008 32.000 0.00 0.00 0.00 3.35
275 280 6.476706 AGTGTGCAAAAATAGAAAAACAGAGC 59.523 34.615 0.00 0.00 0.00 4.09
276 281 6.476706 GTGTGCAAAAATAGAAAAACAGAGCT 59.523 34.615 0.00 0.00 0.00 4.09
277 282 6.476380 TGTGCAAAAATAGAAAAACAGAGCTG 59.524 34.615 0.00 0.00 0.00 4.24
278 283 5.984926 TGCAAAAATAGAAAAACAGAGCTGG 59.015 36.000 0.00 0.00 34.19 4.85
279 284 5.406477 GCAAAAATAGAAAAACAGAGCTGGG 59.594 40.000 0.00 0.00 34.19 4.45
280 285 5.728637 AAAATAGAAAAACAGAGCTGGGG 57.271 39.130 0.00 0.00 34.19 4.96
281 286 4.657814 AATAGAAAAACAGAGCTGGGGA 57.342 40.909 0.00 0.00 34.19 4.81
282 287 2.575805 AGAAAAACAGAGCTGGGGAG 57.424 50.000 0.00 0.00 34.19 4.30
283 288 1.777272 AGAAAAACAGAGCTGGGGAGT 59.223 47.619 0.00 0.00 34.19 3.85
284 289 1.882623 GAAAAACAGAGCTGGGGAGTG 59.117 52.381 0.00 0.00 34.19 3.51
285 290 0.111253 AAAACAGAGCTGGGGAGTGG 59.889 55.000 0.00 0.00 34.19 4.00
286 291 1.783250 AAACAGAGCTGGGGAGTGGG 61.783 60.000 0.00 0.00 34.19 4.61
287 292 3.406200 CAGAGCTGGGGAGTGGGG 61.406 72.222 0.00 0.00 0.00 4.96
321 326 2.417339 GGAGTTTTCGCCTTTGGTTC 57.583 50.000 0.00 0.00 36.82 3.62
322 327 1.679153 GGAGTTTTCGCCTTTGGTTCA 59.321 47.619 0.00 0.00 36.82 3.18
337 342 1.419381 GTTCAAAGGAAGGGGGCAAA 58.581 50.000 0.00 0.00 32.62 3.68
374 379 6.959366 AGGAGTTTCCATTTGATCCCATTTTA 59.041 34.615 0.00 0.00 39.61 1.52
375 380 7.124750 AGGAGTTTCCATTTGATCCCATTTTAG 59.875 37.037 0.00 0.00 39.61 1.85
378 383 8.534496 AGTTTCCATTTGATCCCATTTTAGAAG 58.466 33.333 0.00 0.00 0.00 2.85
382 387 7.677745 TCCATTTGATCCCATTTTAGAAGGAAA 59.322 33.333 0.00 0.00 30.71 3.13
384 389 9.723601 CATTTGATCCCATTTTAGAAGGAAAAA 57.276 29.630 0.00 0.00 32.29 1.94
385 390 9.725019 ATTTGATCCCATTTTAGAAGGAAAAAC 57.275 29.630 0.00 0.00 32.29 2.43
386 391 7.239763 TGATCCCATTTTAGAAGGAAAAACC 57.760 36.000 0.00 0.00 32.29 3.27
387 392 6.212589 TGATCCCATTTTAGAAGGAAAAACCC 59.787 38.462 0.00 0.00 40.05 4.11
388 393 4.525100 TCCCATTTTAGAAGGAAAAACCCG 59.475 41.667 0.00 0.00 40.05 5.28
389 394 4.322424 CCCATTTTAGAAGGAAAAACCCGG 60.322 45.833 0.00 0.00 40.05 5.73
390 395 4.282449 CCATTTTAGAAGGAAAAACCCGGT 59.718 41.667 0.00 0.00 40.05 5.28
402 407 6.722590 AGGAAAAACCCGGTAATTCTAACATT 59.277 34.615 0.00 0.00 40.05 2.71
418 423 9.696917 ATTCTAACATTCACTTGGACATTTTTC 57.303 29.630 0.00 0.00 0.00 2.29
419 424 8.463930 TCTAACATTCACTTGGACATTTTTCT 57.536 30.769 0.00 0.00 0.00 2.52
423 428 9.883142 AACATTCACTTGGACATTTTTCTTAAA 57.117 25.926 0.00 0.00 0.00 1.52
424 429 9.313118 ACATTCACTTGGACATTTTTCTTAAAC 57.687 29.630 0.00 0.00 0.00 2.01
425 430 9.311916 CATTCACTTGGACATTTTTCTTAAACA 57.688 29.630 0.00 0.00 0.00 2.83
533 591 2.624838 ACCAAAGCATCCAAGTTGACAG 59.375 45.455 3.87 0.00 0.00 3.51
537 595 5.159209 CAAAGCATCCAAGTTGACAGAATC 58.841 41.667 3.87 0.00 0.00 2.52
538 596 4.025040 AGCATCCAAGTTGACAGAATCA 57.975 40.909 3.87 0.00 34.65 2.57
540 598 3.503363 GCATCCAAGTTGACAGAATCACA 59.497 43.478 3.87 0.00 36.92 3.58
541 599 4.157289 GCATCCAAGTTGACAGAATCACAT 59.843 41.667 3.87 0.00 36.92 3.21
542 600 5.355071 GCATCCAAGTTGACAGAATCACATA 59.645 40.000 3.87 0.00 36.92 2.29
543 601 6.127925 GCATCCAAGTTGACAGAATCACATAA 60.128 38.462 3.87 0.00 36.92 1.90
544 602 7.415989 GCATCCAAGTTGACAGAATCACATAAT 60.416 37.037 3.87 0.00 36.92 1.28
545 603 8.464404 CATCCAAGTTGACAGAATCACATAATT 58.536 33.333 3.87 0.00 36.92 1.40
546 604 8.408043 TCCAAGTTGACAGAATCACATAATTT 57.592 30.769 3.87 0.00 36.92 1.82
547 605 8.514594 TCCAAGTTGACAGAATCACATAATTTC 58.485 33.333 3.87 0.00 36.92 2.17
548 606 8.517878 CCAAGTTGACAGAATCACATAATTTCT 58.482 33.333 3.87 0.00 36.92 2.52
596 654 8.212259 ACATGCATCTATTATTTCTACTCCCT 57.788 34.615 0.00 0.00 0.00 4.20
597 655 8.317679 ACATGCATCTATTATTTCTACTCCCTC 58.682 37.037 0.00 0.00 0.00 4.30
598 656 8.538701 CATGCATCTATTATTTCTACTCCCTCT 58.461 37.037 0.00 0.00 0.00 3.69
599 657 7.901029 TGCATCTATTATTTCTACTCCCTCTG 58.099 38.462 0.00 0.00 0.00 3.35
600 658 7.510685 TGCATCTATTATTTCTACTCCCTCTGT 59.489 37.037 0.00 0.00 0.00 3.41
601 659 8.371699 GCATCTATTATTTCTACTCCCTCTGTT 58.628 37.037 0.00 0.00 0.00 3.16
602 660 9.921637 CATCTATTATTTCTACTCCCTCTGTTC 57.078 37.037 0.00 0.00 0.00 3.18
603 661 8.480133 TCTATTATTTCTACTCCCTCTGTTCC 57.520 38.462 0.00 0.00 0.00 3.62
604 662 5.593679 TTATTTCTACTCCCTCTGTTCCG 57.406 43.478 0.00 0.00 0.00 4.30
605 663 2.893215 TTCTACTCCCTCTGTTCCGA 57.107 50.000 0.00 0.00 0.00 4.55
606 664 3.383698 TTCTACTCCCTCTGTTCCGAT 57.616 47.619 0.00 0.00 0.00 4.18
607 665 3.383698 TCTACTCCCTCTGTTCCGATT 57.616 47.619 0.00 0.00 0.00 3.34
608 666 3.709587 TCTACTCCCTCTGTTCCGATTT 58.290 45.455 0.00 0.00 0.00 2.17
609 667 4.863548 TCTACTCCCTCTGTTCCGATTTA 58.136 43.478 0.00 0.00 0.00 1.40
610 668 3.889520 ACTCCCTCTGTTCCGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
611 669 3.442076 ACTCCCTCTGTTCCGATTTACT 58.558 45.455 0.00 0.00 0.00 2.24
612 670 3.447944 ACTCCCTCTGTTCCGATTTACTC 59.552 47.826 0.00 0.00 0.00 2.59
614 672 2.165845 CCCTCTGTTCCGATTTACTCGT 59.834 50.000 0.00 0.00 46.18 4.18
615 673 3.436496 CCTCTGTTCCGATTTACTCGTC 58.564 50.000 0.00 0.00 46.18 4.20
616 674 3.099362 CTCTGTTCCGATTTACTCGTCG 58.901 50.000 0.00 0.00 46.18 5.12
617 675 2.485426 TCTGTTCCGATTTACTCGTCGT 59.515 45.455 0.00 0.00 46.18 4.34
618 676 2.587956 TGTTCCGATTTACTCGTCGTG 58.412 47.619 0.00 0.00 46.18 4.35
619 677 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
620 678 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
621 679 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
622 680 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
623 681 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
624 682 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
625 683 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
626 684 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
627 685 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
628 686 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
629 687 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
630 688 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
631 689 4.374399 ACTCGTCGTGGTTTTAGTTCAAT 58.626 39.130 0.00 0.00 0.00 2.57
632 690 4.812626 ACTCGTCGTGGTTTTAGTTCAATT 59.187 37.500 0.00 0.00 0.00 2.32
633 691 5.984926 ACTCGTCGTGGTTTTAGTTCAATTA 59.015 36.000 0.00 0.00 0.00 1.40
634 692 6.145048 ACTCGTCGTGGTTTTAGTTCAATTAG 59.855 38.462 0.00 0.00 0.00 1.73
635 693 5.984926 TCGTCGTGGTTTTAGTTCAATTAGT 59.015 36.000 0.00 0.00 0.00 2.24
636 694 6.479660 TCGTCGTGGTTTTAGTTCAATTAGTT 59.520 34.615 0.00 0.00 0.00 2.24
637 695 6.788930 CGTCGTGGTTTTAGTTCAATTAGTTC 59.211 38.462 0.00 0.00 0.00 3.01
638 696 7.517101 CGTCGTGGTTTTAGTTCAATTAGTTCA 60.517 37.037 0.00 0.00 0.00 3.18
639 697 8.124199 GTCGTGGTTTTAGTTCAATTAGTTCAA 58.876 33.333 0.00 0.00 0.00 2.69
640 698 8.675504 TCGTGGTTTTAGTTCAATTAGTTCAAA 58.324 29.630 0.00 0.00 0.00 2.69
641 699 9.458374 CGTGGTTTTAGTTCAATTAGTTCAAAT 57.542 29.630 0.00 0.00 0.00 2.32
659 717 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
660 718 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
661 719 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
662 720 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
663 721 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
664 722 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
665 723 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
666 724 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
667 725 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
668 726 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
669 727 5.531634 ACTAAAACCACGACGAGTAAATCA 58.468 37.500 0.00 0.00 0.00 2.57
670 728 4.985044 AAAACCACGACGAGTAAATCAG 57.015 40.909 0.00 0.00 0.00 2.90
671 729 3.928727 AACCACGACGAGTAAATCAGA 57.071 42.857 0.00 0.00 0.00 3.27
672 730 3.928727 ACCACGACGAGTAAATCAGAA 57.071 42.857 0.00 0.00 0.00 3.02
673 731 3.572584 ACCACGACGAGTAAATCAGAAC 58.427 45.455 0.00 0.00 0.00 3.01
674 732 2.592897 CCACGACGAGTAAATCAGAACG 59.407 50.000 0.00 0.00 0.00 3.95
675 733 2.592897 CACGACGAGTAAATCAGAACGG 59.407 50.000 0.00 0.00 0.00 4.44
676 734 2.485426 ACGACGAGTAAATCAGAACGGA 59.515 45.455 0.00 0.00 0.00 4.69
677 735 3.099362 CGACGAGTAAATCAGAACGGAG 58.901 50.000 0.00 0.00 0.00 4.63
678 736 3.436496 GACGAGTAAATCAGAACGGAGG 58.564 50.000 0.00 0.00 0.00 4.30
679 737 2.165845 ACGAGTAAATCAGAACGGAGGG 59.834 50.000 0.00 0.00 0.00 4.30
680 738 2.426024 CGAGTAAATCAGAACGGAGGGA 59.574 50.000 0.00 0.00 0.00 4.20
681 739 3.489398 CGAGTAAATCAGAACGGAGGGAG 60.489 52.174 0.00 0.00 0.00 4.30
682 740 3.442076 AGTAAATCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
683 741 4.607239 AGTAAATCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
684 742 5.209659 AGTAAATCAGAACGGAGGGAGTAT 58.790 41.667 0.00 0.00 0.00 2.12
709 767 9.860898 ATATTTTTAGAATCCTGCAAACTGAAC 57.139 29.630 0.00 0.00 0.00 3.18
717 775 0.884704 TGCAAACTGAACGAGCCCTC 60.885 55.000 0.00 0.00 0.00 4.30
796 859 6.380995 TGTTCAAATTCTGACATGAATTCGG 58.619 36.000 0.00 0.00 43.40 4.30
832 895 3.240134 GACGTGGCTGGCCTTCTCA 62.240 63.158 13.05 0.00 36.94 3.27
838 901 1.134007 TGGCTGGCCTTCTCATGTATG 60.134 52.381 13.05 0.00 36.94 2.39
846 909 3.209410 CCTTCTCATGTATGCCTCCAAC 58.791 50.000 0.00 0.00 0.00 3.77
853 916 5.853936 TCATGTATGCCTCCAACTATACAC 58.146 41.667 0.00 0.00 38.42 2.90
857 920 6.346096 TGTATGCCTCCAACTATACACTTTC 58.654 40.000 0.00 0.00 32.71 2.62
861 924 4.683832 CCTCCAACTATACACTTTCTCCG 58.316 47.826 0.00 0.00 0.00 4.63
862 925 4.159879 CCTCCAACTATACACTTTCTCCGT 59.840 45.833 0.00 0.00 0.00 4.69
863 926 5.320549 TCCAACTATACACTTTCTCCGTC 57.679 43.478 0.00 0.00 0.00 4.79
866 929 6.604396 TCCAACTATACACTTTCTCCGTCATA 59.396 38.462 0.00 0.00 0.00 2.15
875 938 7.486647 ACACTTTCTCCGTCATATTTACGTAT 58.513 34.615 0.00 0.00 38.67 3.06
879 942 9.845305 CTTTCTCCGTCATATTTACGTATTTTC 57.155 33.333 0.00 0.00 38.67 2.29
881 944 8.570096 TCTCCGTCATATTTACGTATTTTCTG 57.430 34.615 0.00 0.00 38.67 3.02
882 945 7.650504 TCTCCGTCATATTTACGTATTTTCTGG 59.349 37.037 0.00 0.00 38.67 3.86
891 962 7.903995 TTTACGTATTTTCTGGTAAATCCGT 57.096 32.000 0.00 7.92 41.11 4.69
897 968 3.947910 TTCTGGTAAATCCGTCTTCGT 57.052 42.857 0.00 0.00 39.52 3.85
900 971 3.119602 TCTGGTAAATCCGTCTTCGTCTG 60.120 47.826 0.00 0.00 39.52 3.51
913 984 1.153706 CGTCTGCCGTTCCCGTAAT 60.154 57.895 0.00 0.00 0.00 1.89
919 990 1.758280 TGCCGTTCCCGTAATGTAGAT 59.242 47.619 0.00 0.00 0.00 1.98
921 992 3.575256 TGCCGTTCCCGTAATGTAGATAT 59.425 43.478 0.00 0.00 0.00 1.63
933 1005 4.966965 ATGTAGATATTACGCCTCCTCG 57.033 45.455 0.00 0.00 0.00 4.63
935 1007 2.289592 AGATATTACGCCTCCTCGGT 57.710 50.000 0.00 0.00 34.25 4.69
953 1025 1.754621 TGTCAAACTGCCCGCCAAA 60.755 52.632 0.00 0.00 0.00 3.28
1257 1329 2.261671 CCCTTCGACCACCTCACG 59.738 66.667 0.00 0.00 0.00 4.35
1267 1339 1.680651 CACCTCACGCTCCTCCTCT 60.681 63.158 0.00 0.00 0.00 3.69
1867 1939 4.133796 GACCAAATGCCCCAGCGC 62.134 66.667 0.00 0.00 44.31 5.92
1895 1967 1.833630 TCTCCTACAACTCCATGCTGG 59.166 52.381 0.00 0.00 39.43 4.85
1900 1972 3.650950 AACTCCATGCTGGCCGGT 61.651 61.111 14.55 0.00 37.47 5.28
1989 2061 1.817099 CCTGGAACTCGATGCTGGC 60.817 63.158 0.00 0.00 0.00 4.85
1999 2071 3.323758 GATGCTGGCCGGGTACACA 62.324 63.158 15.02 1.97 0.00 3.72
2225 2297 4.481195 GCCTGAGGCTGTTTGACA 57.519 55.556 17.96 0.00 46.69 3.58
2279 2351 1.068741 AGAAGACCTTCGTGAGCGTTT 59.931 47.619 4.32 0.00 43.97 3.60
2359 2431 1.381872 GCAGAGGTGGGAGAGGCTA 60.382 63.158 0.00 0.00 0.00 3.93
2360 2432 0.762461 GCAGAGGTGGGAGAGGCTAT 60.762 60.000 0.00 0.00 0.00 2.97
2395 2467 2.029518 CTCACGGCACTGCTGACA 59.970 61.111 17.08 1.44 38.46 3.58
2455 2527 1.586564 CTTCGACTCGATGGGCGAC 60.587 63.158 1.55 0.00 45.59 5.19
2599 2671 1.123077 TGTGTGTCTTGAGCTCCTGT 58.877 50.000 12.15 0.00 0.00 4.00
2655 2727 1.191489 TTCGACAGGATGGTCAGGCA 61.191 55.000 0.00 0.00 43.62 4.75
2656 2728 1.153489 CGACAGGATGGTCAGGCAG 60.153 63.158 0.00 0.00 43.62 4.85
2669 2741 2.052690 AGGCAGTACGGCATCGAGT 61.053 57.895 19.70 0.00 44.47 4.18
2758 2830 4.822026 AGAACCTCGTCCAGAATTTACAG 58.178 43.478 0.00 0.00 0.00 2.74
2847 2922 2.185310 CTCGGGGAGTTTGTGGGGAG 62.185 65.000 0.00 0.00 0.00 4.30
2857 2932 0.329261 TTGTGGGGAGGAAGCTGATG 59.671 55.000 0.00 0.00 0.00 3.07
2864 2939 1.072015 GGAGGAAGCTGATGGAGATGG 59.928 57.143 0.00 0.00 0.00 3.51
3002 3077 4.106925 GGCTGAGCCTGGTGGGAG 62.107 72.222 17.96 0.00 46.69 4.30
3003 3078 4.106925 GCTGAGCCTGGTGGGAGG 62.107 72.222 0.00 0.00 37.23 4.30
3055 3130 2.434359 GGCGTCTCGGTTGGAAGG 60.434 66.667 0.00 0.00 0.00 3.46
3068 3143 2.974698 GAAGGCGGGATGATGGCG 60.975 66.667 0.00 0.00 35.52 5.69
3069 3144 3.757248 GAAGGCGGGATGATGGCGT 62.757 63.158 0.00 0.00 35.52 5.68
3127 3210 1.600916 GAAGGCTGCCGTTTGAGGT 60.601 57.895 13.96 0.00 0.00 3.85
3129 3212 3.365265 GGCTGCCGTTTGAGGTGG 61.365 66.667 1.35 0.00 0.00 4.61
3138 3221 2.766925 TTTGAGGTGGCCCAGTGCT 61.767 57.895 0.00 0.00 40.92 4.40
3190 3364 2.664851 TGTGCTCCTTTGGCGTCG 60.665 61.111 0.00 0.00 0.00 5.12
3261 3443 0.743701 GACTGACTGCTGGCTGATGG 60.744 60.000 10.35 0.00 0.00 3.51
3292 3474 3.500680 TGGAATAAGCCAGAAAACACGTC 59.499 43.478 0.00 0.00 33.10 4.34
3324 3506 1.302033 GTGGCAGTGGTCTGAGGTG 60.302 63.158 0.00 0.00 43.76 4.00
3330 3512 1.344438 CAGTGGTCTGAGGTGCTTGTA 59.656 52.381 0.00 0.00 43.76 2.41
3334 3516 1.896465 GGTCTGAGGTGCTTGTACTCT 59.104 52.381 0.00 0.00 32.58 3.24
3335 3517 2.300437 GGTCTGAGGTGCTTGTACTCTT 59.700 50.000 0.00 0.00 32.58 2.85
3336 3518 3.580731 GTCTGAGGTGCTTGTACTCTTC 58.419 50.000 0.00 0.00 32.58 2.87
3349 3531 0.324285 ACTCTTCCAGCTCTTGCCAG 59.676 55.000 0.00 0.00 40.80 4.85
3425 3638 1.889105 GCCGGCGATGTGATGTGAT 60.889 57.895 12.58 0.00 0.00 3.06
3432 3653 3.492383 GGCGATGTGATGTGATAAGTGAG 59.508 47.826 0.00 0.00 0.00 3.51
3472 3712 1.255667 TGTCGGCAAGGTAGGGAGAC 61.256 60.000 0.00 0.00 0.00 3.36
3476 3717 1.516423 GCAAGGTAGGGAGACGGAC 59.484 63.158 0.00 0.00 0.00 4.79
3477 3718 1.807886 CAAGGTAGGGAGACGGACG 59.192 63.158 0.00 0.00 0.00 4.79
3479 3720 1.856539 AAGGTAGGGAGACGGACGGA 61.857 60.000 0.00 0.00 0.00 4.69
3480 3721 2.117779 GGTAGGGAGACGGACGGAC 61.118 68.421 0.00 0.00 0.00 4.79
3481 3722 2.124983 TAGGGAGACGGACGGACG 60.125 66.667 0.00 0.00 40.31 4.79
3482 3723 3.687321 TAGGGAGACGGACGGACGG 62.687 68.421 6.00 0.00 38.39 4.79
3535 3776 4.388499 CCCTGGAACGTGGACGGG 62.388 72.222 3.93 0.00 44.95 5.28
3572 3816 2.571653 TCGGATCTGTGGAAGGACAAAT 59.428 45.455 0.42 0.00 0.00 2.32
3589 3833 5.221621 GGACAAATGGGAAAAGGAACATGAA 60.222 40.000 0.00 0.00 0.00 2.57
3595 3845 4.965532 TGGGAAAAGGAACATGAAAAGGAA 59.034 37.500 0.00 0.00 0.00 3.36
3602 3852 9.492973 AAAAGGAACATGAAAAGGAACATATTG 57.507 29.630 0.00 0.00 0.00 1.90
3679 3929 6.627395 TCTTTTCCAGCAAGAAAAATCGTA 57.373 33.333 13.02 0.00 43.27 3.43
3701 3952 4.597404 TCATGGCTAACATTTGTTGCAA 57.403 36.364 6.21 0.00 37.84 4.08
3702 3953 4.305769 TCATGGCTAACATTTGTTGCAAC 58.694 39.130 22.83 22.83 37.84 4.17
3714 4001 7.994194 ACATTTGTTGCAACCACATTATTTTT 58.006 26.923 26.14 0.00 0.00 1.94
3745 4032 9.066892 TCTTTTGCCATTATATGTAAGTCATCC 57.933 33.333 0.00 0.00 37.91 3.51
3746 4033 8.995027 TTTTGCCATTATATGTAAGTCATCCT 57.005 30.769 0.00 0.00 37.91 3.24
3748 4035 5.939883 TGCCATTATATGTAAGTCATCCTGC 59.060 40.000 0.00 0.00 37.91 4.85
3749 4036 5.939883 GCCATTATATGTAAGTCATCCTGCA 59.060 40.000 0.00 0.00 37.91 4.41
3750 4037 6.430925 GCCATTATATGTAAGTCATCCTGCAA 59.569 38.462 0.00 0.00 37.91 4.08
3772 4059 4.680237 CACCTGGCGGCGAGACAA 62.680 66.667 12.98 0.00 37.47 3.18
3850 4174 1.325476 GCAGCCCAAGAAATCAGGGG 61.325 60.000 11.47 8.53 43.04 4.79
3928 4256 2.283173 CCTTGCCCAGGTTCCCAC 60.283 66.667 0.00 0.00 37.99 4.61
3930 4258 1.152567 CTTGCCCAGGTTCCCACAA 60.153 57.895 0.00 0.00 0.00 3.33
3936 4264 0.995024 CCAGGTTCCCACAATCCTCT 59.005 55.000 0.00 0.00 0.00 3.69
3940 4268 1.636003 GGTTCCCACAATCCTCTTCCT 59.364 52.381 0.00 0.00 0.00 3.36
3941 4269 2.356227 GGTTCCCACAATCCTCTTCCTC 60.356 54.545 0.00 0.00 0.00 3.71
3943 4271 1.203428 TCCCACAATCCTCTTCCTCCA 60.203 52.381 0.00 0.00 0.00 3.86
4064 4430 2.334838 GGCTTTGTCAGGTACGTACTG 58.665 52.381 24.07 18.89 37.30 2.74
4069 4435 1.965643 TGTCAGGTACGTACTGGCTTT 59.034 47.619 24.07 2.29 41.04 3.51
4109 4475 2.170607 CCCGATCTCCTTTTCCTGCTTA 59.829 50.000 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 6.029346 AGGTTTCCAAGCAAGATGTATTTG 57.971 37.500 0.00 0.00 0.00 2.32
71 72 5.185828 GGAGGTTTCCAAGCAAGATGTATTT 59.814 40.000 0.00 0.00 43.45 1.40
72 73 4.706962 GGAGGTTTCCAAGCAAGATGTATT 59.293 41.667 0.00 0.00 43.45 1.89
73 74 4.273318 GGAGGTTTCCAAGCAAGATGTAT 58.727 43.478 0.00 0.00 43.45 2.29
74 75 3.686016 GGAGGTTTCCAAGCAAGATGTA 58.314 45.455 0.00 0.00 43.45 2.29
75 76 2.519013 GGAGGTTTCCAAGCAAGATGT 58.481 47.619 0.00 0.00 43.45 3.06
86 87 3.511146 TCATGCAAAATCTGGAGGTTTCC 59.489 43.478 0.00 0.00 44.31 3.13
87 88 4.789012 TCATGCAAAATCTGGAGGTTTC 57.211 40.909 0.00 0.00 0.00 2.78
88 89 5.622914 CGATTCATGCAAAATCTGGAGGTTT 60.623 40.000 17.93 0.00 32.15 3.27
89 90 4.142315 CGATTCATGCAAAATCTGGAGGTT 60.142 41.667 17.93 0.00 32.15 3.50
90 91 3.379372 CGATTCATGCAAAATCTGGAGGT 59.621 43.478 17.93 0.00 32.15 3.85
91 92 3.628942 TCGATTCATGCAAAATCTGGAGG 59.371 43.478 17.93 6.97 32.15 4.30
92 93 4.595116 GTCGATTCATGCAAAATCTGGAG 58.405 43.478 17.93 7.24 32.15 3.86
93 94 3.063861 CGTCGATTCATGCAAAATCTGGA 59.936 43.478 17.93 9.64 32.15 3.86
94 95 3.181507 ACGTCGATTCATGCAAAATCTGG 60.182 43.478 17.93 11.54 32.15 3.86
97 98 3.747193 ACACGTCGATTCATGCAAAATC 58.253 40.909 12.79 12.79 0.00 2.17
103 104 1.350193 ACAGACACGTCGATTCATGC 58.650 50.000 0.00 0.00 34.09 4.06
111 112 2.132762 AGCCTTTTAACAGACACGTCG 58.867 47.619 0.00 0.00 34.09 5.12
118 119 5.300792 CCAACCAAAGTAGCCTTTTAACAGA 59.699 40.000 0.00 0.00 38.87 3.41
126 127 4.112634 TCATTCCAACCAAAGTAGCCTT 57.887 40.909 0.00 0.00 0.00 4.35
127 128 3.806949 TCATTCCAACCAAAGTAGCCT 57.193 42.857 0.00 0.00 0.00 4.58
129 130 4.702131 ACTGATCATTCCAACCAAAGTAGC 59.298 41.667 0.00 0.00 0.00 3.58
130 131 5.124457 CCACTGATCATTCCAACCAAAGTAG 59.876 44.000 0.00 0.00 0.00 2.57
131 132 5.009631 CCACTGATCATTCCAACCAAAGTA 58.990 41.667 0.00 0.00 0.00 2.24
132 133 3.828451 CCACTGATCATTCCAACCAAAGT 59.172 43.478 0.00 0.00 0.00 2.66
133 134 4.081406 TCCACTGATCATTCCAACCAAAG 58.919 43.478 0.00 0.00 0.00 2.77
149 150 6.377996 TCATATTCAATGGTTTTCCTCCACTG 59.622 38.462 0.00 0.00 41.38 3.66
181 182 9.276590 CAAAGGCATGAATAGTATCATTACAGA 57.723 33.333 0.00 0.00 37.96 3.41
184 185 8.396272 ACCAAAGGCATGAATAGTATCATTAC 57.604 34.615 0.00 0.00 37.96 1.89
215 220 1.049289 ACTAGTCGCTCCCCCATTCC 61.049 60.000 0.00 0.00 0.00 3.01
224 229 7.419204 ACACTCAGATTTTATACTAGTCGCTC 58.581 38.462 0.00 0.00 0.00 5.03
225 230 7.336161 ACACTCAGATTTTATACTAGTCGCT 57.664 36.000 0.00 0.00 0.00 4.93
226 231 8.344098 ACTACACTCAGATTTTATACTAGTCGC 58.656 37.037 0.00 0.00 0.00 5.19
227 232 9.653067 CACTACACTCAGATTTTATACTAGTCG 57.347 37.037 0.00 0.00 0.00 4.18
230 235 9.239002 GCACACTACACTCAGATTTTATACTAG 57.761 37.037 0.00 0.00 0.00 2.57
231 236 8.745590 TGCACACTACACTCAGATTTTATACTA 58.254 33.333 0.00 0.00 0.00 1.82
232 237 7.611770 TGCACACTACACTCAGATTTTATACT 58.388 34.615 0.00 0.00 0.00 2.12
233 238 7.827819 TGCACACTACACTCAGATTTTATAC 57.172 36.000 0.00 0.00 0.00 1.47
234 239 8.840833 TTTGCACACTACACTCAGATTTTATA 57.159 30.769 0.00 0.00 0.00 0.98
235 240 7.744087 TTTGCACACTACACTCAGATTTTAT 57.256 32.000 0.00 0.00 0.00 1.40
236 241 7.561021 TTTTGCACACTACACTCAGATTTTA 57.439 32.000 0.00 0.00 0.00 1.52
237 242 6.449635 TTTTGCACACTACACTCAGATTTT 57.550 33.333 0.00 0.00 0.00 1.82
238 243 6.449635 TTTTTGCACACTACACTCAGATTT 57.550 33.333 0.00 0.00 0.00 2.17
239 244 6.639632 ATTTTTGCACACTACACTCAGATT 57.360 33.333 0.00 0.00 0.00 2.40
240 245 7.161404 TCTATTTTTGCACACTACACTCAGAT 58.839 34.615 0.00 0.00 0.00 2.90
241 246 6.521162 TCTATTTTTGCACACTACACTCAGA 58.479 36.000 0.00 0.00 0.00 3.27
242 247 6.785488 TCTATTTTTGCACACTACACTCAG 57.215 37.500 0.00 0.00 0.00 3.35
243 248 7.561021 TTTCTATTTTTGCACACTACACTCA 57.439 32.000 0.00 0.00 0.00 3.41
244 249 8.743099 GTTTTTCTATTTTTGCACACTACACTC 58.257 33.333 0.00 0.00 0.00 3.51
245 250 8.247562 TGTTTTTCTATTTTTGCACACTACACT 58.752 29.630 0.00 0.00 0.00 3.55
246 251 8.401046 TGTTTTTCTATTTTTGCACACTACAC 57.599 30.769 0.00 0.00 0.00 2.90
247 252 8.462811 TCTGTTTTTCTATTTTTGCACACTACA 58.537 29.630 0.00 0.00 0.00 2.74
248 253 8.850454 TCTGTTTTTCTATTTTTGCACACTAC 57.150 30.769 0.00 0.00 0.00 2.73
249 254 7.647715 GCTCTGTTTTTCTATTTTTGCACACTA 59.352 33.333 0.00 0.00 0.00 2.74
250 255 6.476706 GCTCTGTTTTTCTATTTTTGCACACT 59.523 34.615 0.00 0.00 0.00 3.55
251 256 6.476706 AGCTCTGTTTTTCTATTTTTGCACAC 59.523 34.615 0.00 0.00 0.00 3.82
252 257 6.476380 CAGCTCTGTTTTTCTATTTTTGCACA 59.524 34.615 0.00 0.00 0.00 4.57
253 258 6.074142 CCAGCTCTGTTTTTCTATTTTTGCAC 60.074 38.462 0.00 0.00 0.00 4.57
254 259 5.984926 CCAGCTCTGTTTTTCTATTTTTGCA 59.015 36.000 0.00 0.00 0.00 4.08
255 260 5.406477 CCCAGCTCTGTTTTTCTATTTTTGC 59.594 40.000 0.00 0.00 0.00 3.68
256 261 5.928264 CCCCAGCTCTGTTTTTCTATTTTTG 59.072 40.000 0.00 0.00 0.00 2.44
257 262 5.838521 TCCCCAGCTCTGTTTTTCTATTTTT 59.161 36.000 0.00 0.00 0.00 1.94
258 263 5.393866 TCCCCAGCTCTGTTTTTCTATTTT 58.606 37.500 0.00 0.00 0.00 1.82
259 264 4.998051 TCCCCAGCTCTGTTTTTCTATTT 58.002 39.130 0.00 0.00 0.00 1.40
260 265 4.043435 ACTCCCCAGCTCTGTTTTTCTATT 59.957 41.667 0.00 0.00 0.00 1.73
261 266 3.589288 ACTCCCCAGCTCTGTTTTTCTAT 59.411 43.478 0.00 0.00 0.00 1.98
262 267 2.979678 ACTCCCCAGCTCTGTTTTTCTA 59.020 45.455 0.00 0.00 0.00 2.10
263 268 1.777272 ACTCCCCAGCTCTGTTTTTCT 59.223 47.619 0.00 0.00 0.00 2.52
264 269 1.882623 CACTCCCCAGCTCTGTTTTTC 59.117 52.381 0.00 0.00 0.00 2.29
265 270 1.479389 CCACTCCCCAGCTCTGTTTTT 60.479 52.381 0.00 0.00 0.00 1.94
266 271 0.111253 CCACTCCCCAGCTCTGTTTT 59.889 55.000 0.00 0.00 0.00 2.43
267 272 1.763770 CCACTCCCCAGCTCTGTTT 59.236 57.895 0.00 0.00 0.00 2.83
268 273 2.227036 CCCACTCCCCAGCTCTGTT 61.227 63.158 0.00 0.00 0.00 3.16
269 274 2.608988 CCCACTCCCCAGCTCTGT 60.609 66.667 0.00 0.00 0.00 3.41
270 275 3.406200 CCCCACTCCCCAGCTCTG 61.406 72.222 0.00 0.00 0.00 3.35
274 279 3.826265 TTTTGCCCCACTCCCCAGC 62.826 63.158 0.00 0.00 0.00 4.85
275 280 1.607467 CTTTTGCCCCACTCCCCAG 60.607 63.158 0.00 0.00 0.00 4.45
276 281 1.660019 TTCTTTTGCCCCACTCCCCA 61.660 55.000 0.00 0.00 0.00 4.96
277 282 0.471022 TTTCTTTTGCCCCACTCCCC 60.471 55.000 0.00 0.00 0.00 4.81
278 283 1.419381 TTTTCTTTTGCCCCACTCCC 58.581 50.000 0.00 0.00 0.00 4.30
279 284 3.070878 TCATTTTTCTTTTGCCCCACTCC 59.929 43.478 0.00 0.00 0.00 3.85
280 285 4.309933 CTCATTTTTCTTTTGCCCCACTC 58.690 43.478 0.00 0.00 0.00 3.51
281 286 3.071457 CCTCATTTTTCTTTTGCCCCACT 59.929 43.478 0.00 0.00 0.00 4.00
282 287 3.070878 TCCTCATTTTTCTTTTGCCCCAC 59.929 43.478 0.00 0.00 0.00 4.61
283 288 3.312890 TCCTCATTTTTCTTTTGCCCCA 58.687 40.909 0.00 0.00 0.00 4.96
284 289 3.324846 ACTCCTCATTTTTCTTTTGCCCC 59.675 43.478 0.00 0.00 0.00 5.80
285 290 4.607293 ACTCCTCATTTTTCTTTTGCCC 57.393 40.909 0.00 0.00 0.00 5.36
286 291 6.292328 CGAAAACTCCTCATTTTTCTTTTGCC 60.292 38.462 5.53 0.00 38.86 4.52
287 292 6.640137 CGAAAACTCCTCATTTTTCTTTTGC 58.360 36.000 5.53 0.00 38.86 3.68
316 321 1.155155 GCCCCCTTCCTTTGAACCA 59.845 57.895 0.00 0.00 0.00 3.67
321 326 0.178935 TCCTTTGCCCCCTTCCTTTG 60.179 55.000 0.00 0.00 0.00 2.77
322 327 0.565674 TTCCTTTGCCCCCTTCCTTT 59.434 50.000 0.00 0.00 0.00 3.11
345 350 4.958581 GGGATCAAATGGAAACTCCTTCAT 59.041 41.667 0.00 0.00 37.46 2.57
351 356 8.066612 TCTAAAATGGGATCAAATGGAAACTC 57.933 34.615 0.00 0.00 0.00 3.01
357 362 7.422465 TTCCTTCTAAAATGGGATCAAATGG 57.578 36.000 0.00 0.00 0.00 3.16
363 368 6.627287 CGGGTTTTTCCTTCTAAAATGGGATC 60.627 42.308 0.00 0.00 36.25 3.36
374 379 4.994282 AGAATTACCGGGTTTTTCCTTCT 58.006 39.130 4.31 2.75 36.25 2.85
375 380 6.207221 TGTTAGAATTACCGGGTTTTTCCTTC 59.793 38.462 4.31 0.44 36.25 3.46
378 383 5.963176 TGTTAGAATTACCGGGTTTTTCC 57.037 39.130 4.31 0.00 0.00 3.13
382 387 6.243148 AGTGAATGTTAGAATTACCGGGTTT 58.757 36.000 4.31 0.00 0.00 3.27
384 389 5.431179 AGTGAATGTTAGAATTACCGGGT 57.569 39.130 6.32 4.46 0.00 5.28
385 390 5.065988 CCAAGTGAATGTTAGAATTACCGGG 59.934 44.000 6.32 0.00 0.00 5.73
386 391 5.878116 TCCAAGTGAATGTTAGAATTACCGG 59.122 40.000 0.00 0.00 0.00 5.28
387 392 6.370442 TGTCCAAGTGAATGTTAGAATTACCG 59.630 38.462 0.00 0.00 0.00 4.02
388 393 7.681939 TGTCCAAGTGAATGTTAGAATTACC 57.318 36.000 0.00 0.00 0.00 2.85
402 407 9.883142 ATTTGTTTAAGAAAAATGTCCAAGTGA 57.117 25.926 0.00 0.00 0.00 3.41
418 423 8.788813 GTTCATCGTGCATAGAATTTGTTTAAG 58.211 33.333 0.00 0.00 0.00 1.85
419 424 8.293157 TGTTCATCGTGCATAGAATTTGTTTAA 58.707 29.630 0.00 0.00 0.00 1.52
421 426 6.676950 TGTTCATCGTGCATAGAATTTGTTT 58.323 32.000 0.00 0.00 0.00 2.83
422 427 6.252967 TGTTCATCGTGCATAGAATTTGTT 57.747 33.333 0.00 0.00 0.00 2.83
423 428 5.878332 TGTTCATCGTGCATAGAATTTGT 57.122 34.783 0.00 0.00 0.00 2.83
424 429 6.467047 GTCTTGTTCATCGTGCATAGAATTTG 59.533 38.462 0.00 0.00 0.00 2.32
425 430 6.372659 AGTCTTGTTCATCGTGCATAGAATTT 59.627 34.615 0.00 0.00 0.00 1.82
496 540 3.495434 TTGGTTCACGGTAATTGGAGT 57.505 42.857 0.00 0.00 0.00 3.85
497 541 3.365969 GCTTTGGTTCACGGTAATTGGAG 60.366 47.826 0.00 0.00 0.00 3.86
570 628 9.326489 AGGGAGTAGAAATAATAGATGCATGTA 57.674 33.333 2.46 4.50 0.00 2.29
573 631 8.538701 CAGAGGGAGTAGAAATAATAGATGCAT 58.461 37.037 0.00 0.00 0.00 3.96
575 633 7.902087 ACAGAGGGAGTAGAAATAATAGATGC 58.098 38.462 0.00 0.00 0.00 3.91
577 635 9.095700 GGAACAGAGGGAGTAGAAATAATAGAT 57.904 37.037 0.00 0.00 0.00 1.98
579 637 7.230913 TCGGAACAGAGGGAGTAGAAATAATAG 59.769 40.741 0.00 0.00 0.00 1.73
590 648 3.442076 AGTAAATCGGAACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
604 662 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
605 663 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
606 664 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
607 665 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
608 666 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
609 667 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
610 668 4.985044 ATTGAACTAAAACCACGACGAG 57.015 40.909 0.00 0.00 0.00 4.18
611 669 5.984926 ACTAATTGAACTAAAACCACGACGA 59.015 36.000 0.00 0.00 0.00 4.20
612 670 6.219302 ACTAATTGAACTAAAACCACGACG 57.781 37.500 0.00 0.00 0.00 5.12
613 671 7.632721 TGAACTAATTGAACTAAAACCACGAC 58.367 34.615 0.00 0.00 0.00 4.34
614 672 7.789273 TGAACTAATTGAACTAAAACCACGA 57.211 32.000 0.00 0.00 0.00 4.35
615 673 8.844441 TTTGAACTAATTGAACTAAAACCACG 57.156 30.769 0.00 0.00 0.00 4.94
635 693 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
636 694 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
637 695 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
638 696 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
639 697 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
640 698 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
641 699 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
642 700 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
643 701 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
644 702 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
645 703 5.984926 TGATTTACTCGTCGTGGTTTTAGTT 59.015 36.000 0.00 0.00 0.00 2.24
646 704 5.531634 TGATTTACTCGTCGTGGTTTTAGT 58.468 37.500 0.00 0.00 0.00 2.24
647 705 5.860182 TCTGATTTACTCGTCGTGGTTTTAG 59.140 40.000 0.00 0.00 0.00 1.85
648 706 5.771469 TCTGATTTACTCGTCGTGGTTTTA 58.229 37.500 0.00 0.00 0.00 1.52
649 707 4.624015 TCTGATTTACTCGTCGTGGTTTT 58.376 39.130 0.00 0.00 0.00 2.43
650 708 4.247267 TCTGATTTACTCGTCGTGGTTT 57.753 40.909 0.00 0.00 0.00 3.27
651 709 3.928727 TCTGATTTACTCGTCGTGGTT 57.071 42.857 0.00 0.00 0.00 3.67
652 710 3.572584 GTTCTGATTTACTCGTCGTGGT 58.427 45.455 0.00 0.00 0.00 4.16
653 711 2.592897 CGTTCTGATTTACTCGTCGTGG 59.407 50.000 0.00 0.00 0.00 4.94
654 712 2.592897 CCGTTCTGATTTACTCGTCGTG 59.407 50.000 0.00 0.00 0.00 4.35
655 713 2.485426 TCCGTTCTGATTTACTCGTCGT 59.515 45.455 0.00 0.00 0.00 4.34
656 714 3.099362 CTCCGTTCTGATTTACTCGTCG 58.901 50.000 0.00 0.00 0.00 5.12
657 715 3.436496 CCTCCGTTCTGATTTACTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
658 716 2.165845 CCCTCCGTTCTGATTTACTCGT 59.834 50.000 0.00 0.00 0.00 4.18
659 717 2.426024 TCCCTCCGTTCTGATTTACTCG 59.574 50.000 0.00 0.00 0.00 4.18
660 718 3.447944 ACTCCCTCCGTTCTGATTTACTC 59.552 47.826 0.00 0.00 0.00 2.59
661 719 3.442076 ACTCCCTCCGTTCTGATTTACT 58.558 45.455 0.00 0.00 0.00 2.24
662 720 3.889520 ACTCCCTCCGTTCTGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
663 721 7.850935 AATATACTCCCTCCGTTCTGATTTA 57.149 36.000 0.00 0.00 0.00 1.40
664 722 6.749036 AATATACTCCCTCCGTTCTGATTT 57.251 37.500 0.00 0.00 0.00 2.17
665 723 6.749036 AAATATACTCCCTCCGTTCTGATT 57.251 37.500 0.00 0.00 0.00 2.57
666 724 6.749036 AAAATATACTCCCTCCGTTCTGAT 57.251 37.500 0.00 0.00 0.00 2.90
667 725 6.555463 AAAAATATACTCCCTCCGTTCTGA 57.445 37.500 0.00 0.00 0.00 3.27
668 726 7.723324 TCTAAAAATATACTCCCTCCGTTCTG 58.277 38.462 0.00 0.00 0.00 3.02
669 727 7.909485 TCTAAAAATATACTCCCTCCGTTCT 57.091 36.000 0.00 0.00 0.00 3.01
670 728 9.205719 GATTCTAAAAATATACTCCCTCCGTTC 57.794 37.037 0.00 0.00 0.00 3.95
671 729 8.155510 GGATTCTAAAAATATACTCCCTCCGTT 58.844 37.037 0.00 0.00 0.00 4.44
672 730 7.513091 AGGATTCTAAAAATATACTCCCTCCGT 59.487 37.037 0.00 0.00 0.00 4.69
673 731 7.819900 CAGGATTCTAAAAATATACTCCCTCCG 59.180 40.741 0.00 0.00 0.00 4.63
674 732 7.608376 GCAGGATTCTAAAAATATACTCCCTCC 59.392 40.741 0.00 0.00 0.00 4.30
675 733 8.157476 TGCAGGATTCTAAAAATATACTCCCTC 58.843 37.037 0.00 0.00 0.00 4.30
676 734 8.045720 TGCAGGATTCTAAAAATATACTCCCT 57.954 34.615 0.00 0.00 0.00 4.20
677 735 8.691661 TTGCAGGATTCTAAAAATATACTCCC 57.308 34.615 0.00 0.00 0.00 4.30
678 736 9.952188 GTTTGCAGGATTCTAAAAATATACTCC 57.048 33.333 0.00 0.00 0.00 3.85
683 741 9.860898 GTTCAGTTTGCAGGATTCTAAAAATAT 57.139 29.630 0.00 0.00 0.00 1.28
684 742 8.020819 CGTTCAGTTTGCAGGATTCTAAAAATA 58.979 33.333 0.00 0.00 0.00 1.40
705 763 2.038426 TCAGAATTTGAGGGCTCGTTCA 59.962 45.455 0.00 0.00 0.00 3.18
746 809 6.513720 GCCACATGTTGAATTCAAGCAAAAAT 60.514 34.615 21.05 5.98 36.39 1.82
747 810 5.220815 GCCACATGTTGAATTCAAGCAAAAA 60.221 36.000 21.05 3.99 36.39 1.94
748 811 4.272991 GCCACATGTTGAATTCAAGCAAAA 59.727 37.500 21.05 5.65 36.39 2.44
749 812 3.808726 GCCACATGTTGAATTCAAGCAAA 59.191 39.130 21.05 8.01 36.39 3.68
750 813 3.069872 AGCCACATGTTGAATTCAAGCAA 59.930 39.130 21.05 10.40 36.39 3.91
751 814 2.629137 AGCCACATGTTGAATTCAAGCA 59.371 40.909 21.05 19.82 36.39 3.91
768 831 4.143543 TCATGTCAGAATTTGAACAGCCA 58.856 39.130 0.00 0.00 37.61 4.75
816 879 2.110967 CATGAGAAGGCCAGCCACG 61.111 63.158 12.03 0.00 38.92 4.94
832 895 6.500589 AAGTGTATAGTTGGAGGCATACAT 57.499 37.500 0.00 0.00 36.54 2.29
838 901 4.443621 GGAGAAAGTGTATAGTTGGAGGC 58.556 47.826 0.00 0.00 0.00 4.70
846 909 9.114965 CGTAAATATGACGGAGAAAGTGTATAG 57.885 37.037 3.11 0.00 36.66 1.31
853 916 9.845305 GAAAATACGTAAATATGACGGAGAAAG 57.155 33.333 13.30 0.00 44.58 2.62
857 920 7.437267 ACCAGAAAATACGTAAATATGACGGAG 59.563 37.037 13.30 0.00 44.58 4.63
875 938 4.634199 ACGAAGACGGATTTACCAGAAAA 58.366 39.130 0.00 0.00 44.46 2.29
879 942 3.179830 CAGACGAAGACGGATTTACCAG 58.820 50.000 0.00 0.00 44.46 4.00
881 944 1.925185 GCAGACGAAGACGGATTTACC 59.075 52.381 0.00 0.00 44.46 2.85
882 945 1.925185 GGCAGACGAAGACGGATTTAC 59.075 52.381 0.00 0.00 44.46 2.01
913 984 3.079578 CCGAGGAGGCGTAATATCTACA 58.920 50.000 0.00 0.00 0.00 2.74
919 990 1.027357 GACACCGAGGAGGCGTAATA 58.973 55.000 0.00 0.00 46.52 0.98
921 992 1.180456 TTGACACCGAGGAGGCGTAA 61.180 55.000 0.00 0.00 46.52 3.18
933 1005 3.670377 GGCGGGCAGTTTGACACC 61.670 66.667 0.00 0.00 0.00 4.16
935 1007 1.733402 CTTTGGCGGGCAGTTTGACA 61.733 55.000 3.91 0.00 0.00 3.58
939 1011 0.468400 TTACCTTTGGCGGGCAGTTT 60.468 50.000 3.91 0.00 0.00 2.66
953 1025 3.446570 CCGCCCGTCTCGTTACCT 61.447 66.667 0.00 0.00 0.00 3.08
1257 1329 2.820845 GGAGGAGAAGAGGAGGAGC 58.179 63.158 0.00 0.00 0.00 4.70
1837 1909 2.933878 TTTGGTCGAACAGCTGGCGT 62.934 55.000 24.17 8.57 0.00 5.68
1867 1939 1.397692 GAGTTGTAGGAGACGAGGTCG 59.602 57.143 0.00 0.00 46.33 4.79
1999 2071 3.362399 CTCCATGTCTCCGCAGCGT 62.362 63.158 15.05 0.00 0.00 5.07
2003 2075 1.900351 CTTCCTCCATGTCTCCGCA 59.100 57.895 0.00 0.00 0.00 5.69
2004 2076 1.522580 GCTTCCTCCATGTCTCCGC 60.523 63.158 0.00 0.00 0.00 5.54
2098 2170 2.668632 GCCATCTTGACGTCCCCA 59.331 61.111 14.12 0.00 0.00 4.96
2225 2297 2.591753 CCCCACTGCCATCATCGT 59.408 61.111 0.00 0.00 0.00 3.73
2248 2320 1.179814 AGGTCTTCTCGTTCGGCACT 61.180 55.000 0.00 0.00 0.00 4.40
2311 2383 1.592400 CGTGCACCGACTTCCCTCTA 61.592 60.000 12.15 0.00 39.56 2.43
2314 2386 4.003788 CCGTGCACCGACTTCCCT 62.004 66.667 12.15 0.00 39.56 4.20
2341 2413 0.762461 ATAGCCTCTCCCACCTCTGC 60.762 60.000 0.00 0.00 0.00 4.26
2386 2458 0.034756 TGGCGTACATTGTCAGCAGT 59.965 50.000 15.29 0.00 0.00 4.40
2581 2653 1.506493 CACAGGAGCTCAAGACACAC 58.494 55.000 17.19 0.00 0.00 3.82
2584 2656 1.372683 GGCACAGGAGCTCAAGACA 59.627 57.895 17.19 0.00 34.17 3.41
2623 2695 3.241530 TCGAAGCACCACCAGCCT 61.242 61.111 0.00 0.00 0.00 4.58
2655 2727 0.456221 CTTGGACTCGATGCCGTACT 59.544 55.000 0.00 0.00 37.05 2.73
2656 2728 0.527817 CCTTGGACTCGATGCCGTAC 60.528 60.000 0.00 0.00 37.05 3.67
2669 2741 1.004560 CGAAGTGCTCTGCCTTGGA 60.005 57.895 0.00 0.00 0.00 3.53
2734 2806 4.527038 TGTAAATTCTGGACGAGGTTCTCT 59.473 41.667 0.00 0.00 0.00 3.10
2847 2922 1.542987 GCTCCATCTCCATCAGCTTCC 60.543 57.143 0.00 0.00 0.00 3.46
2884 2959 0.109735 TGTTCGAGAGCAGCACGTAG 60.110 55.000 0.00 0.00 32.22 3.51
3046 3121 1.103398 CATCATCCCGCCTTCCAACC 61.103 60.000 0.00 0.00 0.00 3.77
3055 3130 4.856801 ACCACGCCATCATCCCGC 62.857 66.667 0.00 0.00 0.00 6.13
3068 3143 3.022287 CAACGACAGCACCACCAC 58.978 61.111 0.00 0.00 0.00 4.16
3069 3144 2.899838 GCAACGACAGCACCACCA 60.900 61.111 0.00 0.00 0.00 4.17
3083 3158 4.802051 GCCCATCTCGCCCAGCAA 62.802 66.667 0.00 0.00 0.00 3.91
3143 3226 4.803426 GCTCCTCACGCCCTCACG 62.803 72.222 0.00 0.00 39.50 4.35
3145 3228 3.385384 CAGCTCCTCACGCCCTCA 61.385 66.667 0.00 0.00 0.00 3.86
3169 3343 2.639286 GCCAAAGGAGCACACACG 59.361 61.111 0.00 0.00 0.00 4.49
3170 3344 2.117941 GACGCCAAAGGAGCACACAC 62.118 60.000 0.00 0.00 0.00 3.82
3171 3345 1.891919 GACGCCAAAGGAGCACACA 60.892 57.895 0.00 0.00 0.00 3.72
3172 3346 2.946762 GACGCCAAAGGAGCACAC 59.053 61.111 0.00 0.00 0.00 3.82
3173 3347 2.664851 CGACGCCAAAGGAGCACA 60.665 61.111 0.00 0.00 0.00 4.57
3174 3348 2.665185 ACGACGCCAAAGGAGCAC 60.665 61.111 0.00 0.00 0.00 4.40
3177 3351 3.423154 GCCACGACGCCAAAGGAG 61.423 66.667 0.00 0.00 0.00 3.69
3261 3443 2.481471 GCTTATTCCACCGCCTGCC 61.481 63.158 0.00 0.00 0.00 4.85
3269 3451 3.252458 ACGTGTTTTCTGGCTTATTCCAC 59.748 43.478 0.00 0.00 31.74 4.02
3292 3474 3.706373 CCACCGGTCCACCTCCAG 61.706 72.222 2.59 0.00 0.00 3.86
3302 3484 3.941188 CAGACCACTGCCACCGGT 61.941 66.667 0.00 0.00 37.33 5.28
3303 3485 3.596066 CTCAGACCACTGCCACCGG 62.596 68.421 0.00 0.00 43.17 5.28
3324 3506 2.999355 CAAGAGCTGGAAGAGTACAAGC 59.001 50.000 0.00 0.00 34.07 4.01
3330 3512 0.324285 CTGGCAAGAGCTGGAAGAGT 59.676 55.000 0.00 0.00 41.70 3.24
3334 3516 1.073722 CCACTGGCAAGAGCTGGAA 59.926 57.895 0.00 0.00 41.70 3.53
3335 3517 1.203441 ATCCACTGGCAAGAGCTGGA 61.203 55.000 1.56 1.56 41.70 3.86
3336 3518 1.030488 CATCCACTGGCAAGAGCTGG 61.030 60.000 0.00 0.00 41.70 4.85
3349 3531 1.202580 CCTTCTCCATCGTCCATCCAC 60.203 57.143 0.00 0.00 0.00 4.02
3425 3638 1.471287 CATCGTCACCGTCCTCACTTA 59.529 52.381 0.00 0.00 35.01 2.24
3448 3669 1.736645 CTACCTTGCCGACACCACG 60.737 63.158 0.00 0.00 0.00 4.94
3449 3670 1.375523 CCTACCTTGCCGACACCAC 60.376 63.158 0.00 0.00 0.00 4.16
3535 3776 1.729131 CGAATGCAAACACCGCCAC 60.729 57.895 0.00 0.00 0.00 5.01
3539 3780 1.086696 AGATCCGAATGCAAACACCG 58.913 50.000 0.00 0.00 0.00 4.94
3572 3816 4.551671 TCCTTTTCATGTTCCTTTTCCCA 58.448 39.130 0.00 0.00 0.00 4.37
3589 3833 5.595952 GCAAGGAGATCCAATATGTTCCTTT 59.404 40.000 6.01 0.00 41.72 3.11
3595 3845 3.749954 GCCAGCAAGGAGATCCAATATGT 60.750 47.826 0.92 0.00 41.22 2.29
3602 3852 0.813821 GTTTGCCAGCAAGGAGATCC 59.186 55.000 5.08 0.00 41.22 3.36
3652 3902 7.495606 ACGATTTTTCTTGCTGGAAAAGATTTT 59.504 29.630 13.77 0.00 43.22 1.82
3679 3929 4.804868 TGCAACAAATGTTAGCCATGAT 57.195 36.364 13.97 0.00 36.32 2.45
3733 4020 2.648059 GGCTTGCAGGATGACTTACAT 58.352 47.619 0.00 0.00 39.69 2.29
3735 4022 1.383523 GGGCTTGCAGGATGACTTAC 58.616 55.000 0.00 0.00 39.69 2.34
3736 4023 0.255890 GGGGCTTGCAGGATGACTTA 59.744 55.000 0.00 0.00 39.69 2.24
3737 4024 1.000396 GGGGCTTGCAGGATGACTT 60.000 57.895 0.00 0.00 39.69 3.01
3739 4026 2.048603 GTGGGGCTTGCAGGATGAC 61.049 63.158 0.00 0.00 39.69 3.06
3928 4256 1.407989 GCAGGTGGAGGAAGAGGATTG 60.408 57.143 0.00 0.00 0.00 2.67
3930 4258 0.985490 GGCAGGTGGAGGAAGAGGAT 60.985 60.000 0.00 0.00 0.00 3.24
3936 4264 2.592993 CGGAAGGCAGGTGGAGGAA 61.593 63.158 0.00 0.00 0.00 3.36
3943 4271 3.764466 CTCTCGCGGAAGGCAGGT 61.764 66.667 6.13 0.00 43.84 4.00
3972 4312 2.548057 GCTTGTTCTCGATGGTTGTTGA 59.452 45.455 0.00 0.00 0.00 3.18
4064 4430 1.603739 GGTGGTGGTGGAGAAAGCC 60.604 63.158 0.00 0.00 0.00 4.35
4069 4435 2.039298 TTGGGGTGGTGGTGGAGA 60.039 61.111 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.