AutoCloner

Multiple sequence alignment - TraesCS4A01G460600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G460600	chr4A	100.000	1908	0	0	1	1908	725837700	725839607	0.000000e+00	3524.0
1	TraesCS4A01G460600	chr4A	100.000	446	0	0	2398	2843	725840097	725840542	0.000000e+00	824.0
2	TraesCS4A01G460600	chr4A	75.117	213	39	9	2404	2611	390876555	390876352	1.400000e-13	87.9
3	TraesCS4A01G460600	chr7A	94.762	840	40	3	1011	1850	11789279	11788444	0.000000e+00	1304.0
4	TraesCS4A01G460600	chr7A	94.762	840	40	3	1011	1850	11792167	11791332	0.000000e+00	1304.0
5	TraesCS4A01G460600	chr7A	94.286	840	44	3	1011	1850	11877426	11876591	0.000000e+00	1282.0
6	TraesCS4A01G460600	chr7A	94.286	840	44	3	1011	1850	11923431	11922596	0.000000e+00	1282.0
7	TraesCS4A01G460600	chr7A	95.445	483	22	0	1426	1908	11982363	11981881	0.000000e+00	771.0
8	TraesCS4A01G460600	chr7A	93.567	342	15	3	3	337	11803189	11802848	1.180000e-138	503.0
9	TraesCS4A01G460600	chr7A	93.567	342	15	3	3	337	11829703	11829362	1.180000e-138	503.0
10	TraesCS4A01G460600	chr7A	92.982	342	17	3	3	337	11883194	11882853	2.540000e-135	492.0
11	TraesCS4A01G460600	chr7A	92.398	342	19	3	3	337	11930174	11929833	5.510000e-132	481.0
12	TraesCS4A01G460600	chr7A	88.594	377	21	11	657	1020	11828948	11828581	3.360000e-119	438.0
13	TraesCS4A01G460600	chr7A	94.035	285	16	1	337	620	11802812	11802528	5.630000e-117	431.0
14	TraesCS4A01G460600	chr7A	94.035	285	16	1	337	620	11829326	11829042	5.630000e-117	431.0
15	TraesCS4A01G460600	chr7A	88.556	367	18	12	667	1020	11802434	11802079	9.420000e-115	424.0
16	TraesCS4A01G460600	chr7A	92.982	285	18	2	337	620	11882817	11882534	5.670000e-112	414.0
17	TraesCS4A01G460600	chr7A	92.982	285	18	2	337	620	11929797	11929514	5.670000e-112	414.0
18	TraesCS4A01G460600	chr7A	88.623	334	22	9	690	1020	11929407	11929087	2.660000e-105	392.0
19	TraesCS4A01G460600	chr7A	87.395	357	23	13	667	1020	11882440	11882103	9.550000e-105	390.0
20	TraesCS4A01G460600	chr7A	90.726	248	21	1	2404	2651	11873554	11873309	2.110000e-86	329.0
21	TraesCS4A01G460600	chr7A	90.566	212	18	1	2440	2651	11919424	11919215	2.160000e-71	279.0
22	TraesCS4A01G460600	chr7A	85.124	242	28	4	2602	2843	11981673	11981440	1.020000e-59	241.0
23	TraesCS4A01G460600	chr7A	88.235	170	17	3	2675	2843	11981278	11981111	1.730000e-47	200.0
24	TraesCS4A01G460600	chr7A	78.161	174	30	6	2404	2575	686005469	686005302	1.390000e-18	104.0
25	TraesCS4A01G460600	chr7A	94.643	56	3	0	584	639	729297439	729297384	1.400000e-13	87.9
26	TraesCS4A01G460600	chrUn	93.567	342	15	3	3	337	341053088	341053429	1.180000e-138	503.0
27	TraesCS4A01G460600	chrUn	88.594	377	21	11	657	1020	341053843	341054210	3.360000e-119	438.0
28	TraesCS4A01G460600	chrUn	94.035	285	16	1	337	620	341053465	341053749	5.630000e-117	431.0
29	TraesCS4A01G460600	chr7D	83.607	183	26	4	584	766	636826553	636826731	4.870000e-38	169.0
30	TraesCS4A01G460600	chr5A	80.347	173	25	8	2404	2573	168240401	168240235	3.850000e-24	122.0
31	TraesCS4A01G460600	chr2D	76.364	220	40	10	2404	2619	16903812	16903601	1.080000e-19	108.0
32	TraesCS4A01G460600	chr7B	75.229	218	44	8	2398	2612	615662838	615663048	8.380000e-16	95.3
33	TraesCS4A01G460600	chr2A	84.615	91	12	2	2404	2493	756138425	756138336	3.900000e-14	89.8
34	TraesCS4A01G460600	chr3A	83.871	93	13	2	2404	2495	12149302	12149393	1.400000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G460600	chr4A	725837700	725840542	2842	False	2174.000000	3524	100.000000	1	2843	2	chr4A.!!$F1	2842
1	TraesCS4A01G460600	chr7A	11788444	11792167	3723	True	1304.000000	1304	94.762000	1011	1850	2	chr7A.!!$R3	839
2	TraesCS4A01G460600	chr7A	11873309	11877426	4117	True	805.500000	1282	92.506000	1011	2651	2	chr7A.!!$R6	1640
3	TraesCS4A01G460600	chr7A	11919215	11923431	4216	True	780.500000	1282	92.426000	1011	2651	2	chr7A.!!$R8	1640
4	TraesCS4A01G460600	chr7A	11828581	11829703	1122	True	457.333333	503	92.065333	3	1020	3	chr7A.!!$R5	1017
5	TraesCS4A01G460600	chr7A	11802079	11803189	1110	True	452.666667	503	92.052667	3	1020	3	chr7A.!!$R4	1017
6	TraesCS4A01G460600	chr7A	11882103	11883194	1091	True	432.000000	492	91.119667	3	1020	3	chr7A.!!$R7	1017
7	TraesCS4A01G460600	chr7A	11929087	11930174	1087	True	429.000000	481	91.334333	3	1020	3	chr7A.!!$R9	1017
8	TraesCS4A01G460600	chr7A	11981111	11982363	1252	True	404.000000	771	89.601333	1426	2843	3	chr7A.!!$R10	1417
9	TraesCS4A01G460600	chrUn	341053088	341054210	1122	False	457.333333	503	92.065333	3	1020	3	chrUn.!!$F1	1017

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
560	605	0.250989	TTAGGAAGGGGCGTTGGTTG	60.251	55.0	0.0	0.0	0.0	3.77	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2398	5485	0.248498	TATGAGTCTTTCTCGCGCGG	60.248	55.0	31.69	20.6	45.46	6.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	32	7.547722	AGCGTTGATACACAAAAGTCATATGTA	59.452	33.333	1.90	0.00	40.36	2.29
32	33	8.172484	GCGTTGATACACAAAAGTCATATGTAA	58.828	33.333	1.90	0.00	40.36	2.41
51	52	1.680338	AAGCGCACCTTGAAGAAGTT	58.320	45.000	11.47	0.00	30.99	2.66
80	81	2.629137	ACATTCTTGCATGCTTCCAACA	59.371	40.909	20.33	0.00	0.00	3.33
86	87	1.478916	TGCATGCTTCCAACATGATGG	59.521	47.619	20.33	15.64	46.33	3.51
91	92	2.029623	GCTTCCAACATGATGGCTGAT	58.970	47.619	16.87	0.00	40.46	2.90
119	120	1.151668	CTTGGTGTCGGAAGCTTGAG	58.848	55.000	2.10	0.00	0.00	3.02
159	160	5.705397	AGGAGAATGATGACAATTCCAGA	57.295	39.130	0.00	0.00	0.00	3.86
195	196	2.425539	GGTTTGCACCATTTCCATTGG	58.574	47.619	0.00	0.00	43.61	3.16
258	259	5.857471	TGATGAATGGATCAAATGGAACC	57.143	39.130	0.00	0.00	42.54	3.62
296	297	2.835764	TGGGTTGAGGTGGAGTACATAC	59.164	50.000	0.00	0.00	0.00	2.39
309	310	7.180408	GGTGGAGTACATACCTATGATTATGGT	59.820	40.741	0.00	0.00	37.15	3.55
369	413	5.533482	ACTCTTTGCACATATACCTCGATC	58.467	41.667	0.00	0.00	0.00	3.69
378	422	6.382608	CACATATACCTCGATCGAGAATTGT	58.617	40.000	39.64	30.23	44.53	2.71
440	485	4.946157	AGTGTCTCCTAGATGCCATTTTTG	59.054	41.667	0.00	0.00	0.00	2.44
449	494	6.980397	CCTAGATGCCATTTTTGATGTAAACC	59.020	38.462	0.00	0.00	0.00	3.27
500	545	9.649167	ATGCATGTGTATCATATATATCCATCG	57.351	33.333	0.00	0.00	34.67	3.84
503	548	9.971922	CATGTGTATCATATATATCCATCGTGT	57.028	33.333	0.00	0.00	34.67	4.49
526	571	7.387948	GTGTAAGCATATCCTAAATGGGTGTAG	59.612	40.741	0.00	0.00	36.20	2.74
534	579	6.080969	TCCTAAATGGGTGTAGGCAATTAA	57.919	37.500	0.00	0.00	37.41	1.40
544	589	8.908903	TGGGTGTAGGCAATTAAATGTATTTAG	58.091	33.333	0.00	0.00	34.13	1.85
555	600	3.945640	ATGTATTTAGGAAGGGGCGTT	57.054	42.857	0.00	0.00	0.00	4.84
560	605	0.250989	TTAGGAAGGGGCGTTGGTTG	60.251	55.000	0.00	0.00	0.00	3.77
572	617	4.364415	GCGTTGGTTGCCAATTATCTTA	57.636	40.909	3.77	0.00	45.80	2.10
620	665	9.628500	AATTTTTAGGGAGTGCCTAATTAGTAG	57.372	33.333	22.34	0.00	31.08	2.57
621	666	7.983166	TTTTAGGGAGTGCCTAATTAGTAGA	57.017	36.000	22.34	4.46	31.08	2.59
622	667	7.983166	TTTAGGGAGTGCCTAATTAGTAGAA	57.017	36.000	22.34	3.75	31.08	2.10
623	668	7.598759	TTAGGGAGTGCCTAATTAGTAGAAG	57.401	40.000	18.47	0.00	30.50	2.85
624	669	5.530243	AGGGAGTGCCTAATTAGTAGAAGT	58.470	41.667	0.00	0.00	30.50	3.01
625	670	6.680540	AGGGAGTGCCTAATTAGTAGAAGTA	58.319	40.000	0.00	0.00	30.50	2.24
896	1040	5.140177	GCGCATAATCTTCCTTTAATGTCG	58.860	41.667	0.30	0.00	0.00	4.35
909	1053	6.589523	TCCTTTAATGTCGCAAATCCATTTTG	59.410	34.615	0.00	0.00	46.22	2.44
926	1070	8.615360	TCCATTTTGTGATATGGGGAAATAAA	57.385	30.769	0.00	0.00	41.35	1.40
974	1118	3.325293	ACTAGAACACACTCATGCCAG	57.675	47.619	0.00	0.00	0.00	4.85
980	1124	1.550524	ACACACTCATGCCAGACGTAT	59.449	47.619	0.00	0.00	0.00	3.06
1032	1177	8.056407	TCTACATATCTGTGCATATAGTGTCC	57.944	38.462	0.00	0.00	36.79	4.02
1034	1179	3.667497	ATCTGTGCATATAGTGTCCGG	57.333	47.619	0.00	0.00	0.00	5.14
1167	1312	8.230472	ACAAAATCTGACTATCAATTCATCCC	57.770	34.615	0.00	0.00	0.00	3.85
1231	1376	1.735198	CTTGCAGCAATGGCAACCG	60.735	57.895	8.67	0.00	45.57	4.44
1255	1400	3.764466	CGACCGCTGCCTTCTCCT	61.764	66.667	0.00	0.00	0.00	3.69
1256	1401	2.185608	GACCGCTGCCTTCTCCTC	59.814	66.667	0.00	0.00	0.00	3.71
1257	1402	3.708220	GACCGCTGCCTTCTCCTCG	62.708	68.421	0.00	0.00	0.00	4.63
1259	1404	3.764466	CGCTGCCTTCTCCTCGGT	61.764	66.667	0.00	0.00	0.00	4.69
1260	1405	2.665603	GCTGCCTTCTCCTCGGTT	59.334	61.111	0.00	0.00	0.00	4.44
1261	1406	1.743252	GCTGCCTTCTCCTCGGTTG	60.743	63.158	0.00	0.00	0.00	3.77
1262	1407	1.743252	CTGCCTTCTCCTCGGTTGC	60.743	63.158	0.00	0.00	0.00	4.17
1263	1408	2.436824	GCCTTCTCCTCGGTTGCC	60.437	66.667	0.00	0.00	0.00	4.52
1285	1430	1.001487	TCATGCTCCTTTTTGTGTGCG	60.001	47.619	0.00	0.00	0.00	5.34
1329	1474	1.507141	GCGACAAGGTCAAGGTGGTG	61.507	60.000	0.00	0.00	32.09	4.17
1441	1586	0.034896	GTCGGACAAAAGGAGCTCCA	59.965	55.000	33.90	7.59	38.89	3.86
1557	1702	2.180432	AAGCCAAGAAAGGTACGGAC	57.820	50.000	0.00	0.00	0.00	4.79
1563	1708	0.896940	AGAAAGGTACGGACGAGGCA	60.897	55.000	0.00	0.00	0.00	4.75
1770	1915	5.894298	TGGATAGCCAGACACTTATCAAT	57.106	39.130	0.00	0.00	39.92	2.57
1879	4966	6.009115	ACCGGAAACAATCTTCATGTAAAC	57.991	37.500	9.46	0.00	0.00	2.01
2429	5655	2.607187	AGACTCATACCGTGCGAAAAG	58.393	47.619	0.00	0.00	0.00	2.27
2447	5673	9.474920	TGCGAAAAGTCTCAAATATTTTGAAAT	57.525	25.926	0.00	0.00	0.00	2.17
2484	5710	4.680110	CGCTCACCTGATAGTTAAATACGG	59.320	45.833	0.00	0.00	0.00	4.02
2504	6187	3.682718	CGGGGCATCTCTTACTGAACATT	60.683	47.826	0.00	0.00	0.00	2.71
2511	6194	7.280876	GGCATCTCTTACTGAACATTATGACAA	59.719	37.037	0.00	0.00	0.00	3.18
2561	6244	2.357881	CCGCAGCAGCAAGTCTCA	60.358	61.111	0.82	0.00	42.27	3.27
2598	6281	7.826744	TGGTTGCCTTCATTTTTACTTCTTTTT	59.173	29.630	0.00	0.00	0.00	1.94
2653	6724	0.102300	GTTTGACCAAGCGGCAGTTT	59.898	50.000	1.45	0.00	34.57	2.66
2654	6725	0.820871	TTTGACCAAGCGGCAGTTTT	59.179	45.000	1.45	0.00	34.57	2.43
2681	6752	3.423154	CGGCAGCGAAGGGTGAAC	61.423	66.667	0.00	0.00	44.37	3.18
2702	6788	0.179018	GCCAATACAGTAGGGCAGGG	60.179	60.000	17.35	0.94	45.70	4.45
2714	6800	0.111639	GGGCAGGGTTTGTGGTTCTA	59.888	55.000	0.00	0.00	0.00	2.10
2766	6852	9.555727	TGTGTTCTTTAAGAGTAACTAGCAAAT	57.444	29.630	0.00	0.00	0.00	2.32
2799	6885	1.028905	TCAACGGGGCAGAAAAAGTG	58.971	50.000	0.00	0.00	0.00	3.16
2809	7699	2.229784	GCAGAAAAAGTGACCCCTCATG	59.770	50.000	0.00	0.00	0.00	3.07
2823	7713	2.344950	CCTCATGCACACTCTCAAGAC	58.655	52.381	0.00	0.00	0.00	3.01
2831	7721	3.923461	GCACACTCTCAAGACATCAGTAC	59.077	47.826	0.00	0.00	0.00	2.73
2836	7726	5.126869	CACTCTCAAGACATCAGTACATCCT	59.873	44.000	0.00	0.00	0.00	3.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	4.518970	ACTTTTGTGTATCAACGCTCCAAT	59.481	37.500	0.00	0.00	37.03	3.16
1	2	3.880490	ACTTTTGTGTATCAACGCTCCAA	59.120	39.130	0.00	0.00	37.03	3.53
31	32	1.680338	ACTTCTTCAAGGTGCGCTTT	58.320	45.000	9.73	0.00	33.37	3.51
32	33	1.680338	AACTTCTTCAAGGTGCGCTT	58.320	45.000	9.73	0.00	33.37	4.68
51	52	3.118992	AGCATGCAAGAATGTCTCGAGTA	60.119	43.478	21.98	3.34	0.00	2.59
80	81	1.822062	GCCCATGTCATCAGCCATCAT	60.822	52.381	0.00	0.00	0.00	2.45
86	87	0.682209	ACCAAGCCCATGTCATCAGC	60.682	55.000	0.00	0.00	0.00	4.26
91	92	1.302431	CGACACCAAGCCCATGTCA	60.302	57.895	4.65	0.00	42.37	3.58
119	120	2.008268	CTTTCCATGGCCATCACCGC	62.008	60.000	17.61	0.00	0.00	5.68
159	160	3.690460	CAAACCACCTCCTTAGCATTCT	58.310	45.455	0.00	0.00	0.00	2.40
195	196	1.247567	TTTTCTAGCAAGCCTGGCAC	58.752	50.000	22.65	9.89	0.00	5.01
227	228	4.500452	TGATCCATTCATCATCTCCCTCT	58.500	43.478	0.00	0.00	0.00	3.69
236	237	4.338964	CGGTTCCATTTGATCCATTCATCA	59.661	41.667	0.00	0.00	33.10	3.07
258	259	1.158484	CCATCCATCTCTGCACTGCG	61.158	60.000	0.00	0.00	0.00	5.18
309	310	6.379133	CCCCTACTCGGTGCACTATATATAAA	59.621	42.308	17.98	0.00	0.00	1.40
325	333	5.243207	AGTTAAACATTGAACCCCTACTCG	58.757	41.667	0.00	0.00	0.00	4.18
378	422	8.448008	ACTGCCCATGATTAAATAGGAGAAATA	58.552	33.333	0.00	0.00	0.00	1.40
416	461	4.414337	AAATGGCATCTAGGAGACACTC	57.586	45.455	0.00	0.00	0.00	3.51
427	472	6.610075	AGGTTTACATCAAAAATGGCATCT	57.390	33.333	0.00	0.00	0.00	2.90
449	494	6.824704	TCATTATTAACCCGGAACACCTTTAG	59.175	38.462	0.73	0.00	0.00	1.85
500	545	6.062095	ACACCCATTTAGGATATGCTTACAC	58.938	40.000	0.65	0.00	41.22	2.90
503	548	6.521770	GCCTACACCCATTTAGGATATGCTTA	60.522	42.308	0.65	0.00	41.22	3.09
526	571	7.441836	CCCCTTCCTAAATACATTTAATTGCC	58.558	38.462	0.00	0.00	32.39	4.52
534	579	3.945640	ACGCCCCTTCCTAAATACATT	57.054	42.857	0.00	0.00	0.00	2.71
544	589	3.680786	GCAACCAACGCCCCTTCC	61.681	66.667	0.00	0.00	0.00	3.46
555	600	9.660180	GGTAAAATTTAAGATAATTGGCAACCA	57.340	29.630	0.00	0.00	0.00	3.67
851	995	6.129273	GCGCATTTTGCACTTGATAATCTATG	60.129	38.462	0.30	0.00	45.36	2.23
909	1053	8.697507	AATCTCACTTTATTTCCCCATATCAC	57.302	34.615	0.00	0.00	0.00	3.06
956	1100	2.352715	CGTCTGGCATGAGTGTGTTCTA	60.353	50.000	0.00	0.00	0.00	2.10
974	1118	6.275335	TGGGTGTGCTAGTATTAAATACGTC	58.725	40.000	0.00	0.00	40.64	4.34
980	1124	6.151985	CCACATTTGGGTGTGCTAGTATTAAA	59.848	38.462	1.65	0.00	46.27	1.52
1032	1177	9.595823	ACGGATATCCAAATAATTAGTATTCCG	57.404	33.333	21.70	4.96	36.44	4.30
1166	1311	1.341482	TGTAGCTGAGAGAGAGGTGGG	60.341	57.143	0.00	0.00	0.00	4.61
1167	1312	2.136298	TGTAGCTGAGAGAGAGGTGG	57.864	55.000	0.00	0.00	0.00	4.61
1204	1349	2.294979	CATTGCTGCAAGGATAGCTGA	58.705	47.619	21.25	0.00	40.52	4.26
1253	1398	1.442526	GAGCATGATGGCAACCGAGG	61.443	60.000	0.00	0.00	35.83	4.63
1254	1399	1.442526	GGAGCATGATGGCAACCGAG	61.443	60.000	0.00	0.00	35.83	4.63
1255	1400	1.451927	GGAGCATGATGGCAACCGA	60.452	57.895	0.00	0.00	35.83	4.69
1256	1401	1.033746	AAGGAGCATGATGGCAACCG	61.034	55.000	0.00	0.00	37.50	4.44
1257	1402	1.188863	AAAGGAGCATGATGGCAACC	58.811	50.000	0.00	0.00	35.83	3.77
1259	1404	2.633967	ACAAAAAGGAGCATGATGGCAA	59.366	40.909	0.00	0.00	35.83	4.52
1260	1405	2.028839	CACAAAAAGGAGCATGATGGCA	60.029	45.455	0.00	0.00	35.83	4.92
1261	1406	2.028748	ACACAAAAAGGAGCATGATGGC	60.029	45.455	0.00	0.00	0.00	4.40
1262	1407	3.581755	CACACAAAAAGGAGCATGATGG	58.418	45.455	0.00	0.00	0.00	3.51
1263	1408	2.991190	GCACACAAAAAGGAGCATGATG	59.009	45.455	0.00	0.00	0.00	3.07
1309	1454	1.966451	CCACCTTGACCTTGTCGCC	60.966	63.158	0.00	0.00	34.95	5.54
1441	1586	2.529389	ACGGAGGTCCTTGGCCTT	60.529	61.111	3.32	0.00	38.01	4.35
1563	1708	1.522569	GCAATACCTGAGGCCGAGT	59.477	57.895	0.00	0.00	0.00	4.18
1770	1915	3.329386	CTTGATCAGCTCCTCGTTTTCA	58.671	45.455	0.00	0.00	0.00	2.69
1856	4943	5.048294	GGTTTACATGAAGATTGTTTCCGGT	60.048	40.000	0.00	0.00	0.00	5.28
1859	4946	6.339587	TGGGTTTACATGAAGATTGTTTCC	57.660	37.500	0.00	0.00	0.00	3.13
1868	4955	7.312899	GGAAGTAATGTTGGGTTTACATGAAG	58.687	38.462	0.00	0.00	36.41	3.02
2397	5484	2.881352	GAGTCTTTCTCGCGCGGG	60.881	66.667	31.69	29.48	33.25	6.13
2398	5485	0.248498	TATGAGTCTTTCTCGCGCGG	60.248	55.000	31.69	20.60	45.46	6.46
2399	5486	0.840729	GTATGAGTCTTTCTCGCGCG	59.159	55.000	26.76	26.76	45.46	6.86
2400	5487	1.201343	GGTATGAGTCTTTCTCGCGC	58.799	55.000	0.00	0.00	45.46	6.86
2401	5488	1.202154	ACGGTATGAGTCTTTCTCGCG	60.202	52.381	0.00	0.00	45.46	5.87
2402	5489	2.186076	CACGGTATGAGTCTTTCTCGC	58.814	52.381	0.00	0.00	45.46	5.03
2447	5673	4.803088	CAGGTGAGCGTTTGAATTCAAAAA	59.197	37.500	30.07	11.41	46.08	1.94
2484	5710	6.203723	GTCATAATGTTCAGTAAGAGATGCCC	59.796	42.308	0.00	0.00	0.00	5.36
2504	6187	5.012046	CACCTATAGGCCATGACTTGTCATA	59.988	44.000	19.25	1.43	39.32	2.15
2511	6194	1.059913	GCCACCTATAGGCCATGACT	58.940	55.000	19.25	0.00	46.50	3.41
2561	6244	0.846693	AGGCAACCAGACTCAAACCT	59.153	50.000	0.00	0.00	37.17	3.50
2573	6256	7.786178	AAAAGAAGTAAAAATGAAGGCAACC	57.214	32.000	0.00	0.00	37.17	3.77
2576	6259	7.710475	CCTCAAAAAGAAGTAAAAATGAAGGCA	59.290	33.333	0.00	0.00	0.00	4.75
2658	6729	3.049674	CCTTCGCTGCCGCTCAAA	61.050	61.111	0.00	0.00	0.00	2.69
2665	6736	2.281484	TGTTCACCCTTCGCTGCC	60.281	61.111	0.00	0.00	0.00	4.85
2668	6739	2.032681	GGCTGTTCACCCTTCGCT	59.967	61.111	0.00	0.00	0.00	4.93
2671	6742	2.749621	CTGTATTGGCTGTTCACCCTTC	59.250	50.000	0.00	0.00	0.00	3.46
2681	6752	1.475751	CCTGCCCTACTGTATTGGCTG	60.476	57.143	21.76	20.61	44.32	4.85
2690	6776	0.609131	CCACAAACCCTGCCCTACTG	60.609	60.000	0.00	0.00	0.00	2.74
2691	6777	1.065997	ACCACAAACCCTGCCCTACT	61.066	55.000	0.00	0.00	0.00	2.57
2721	6807	0.820871	AAAGCGTGCCCTTGTTCAAA	59.179	45.000	0.00	0.00	0.00	2.69
2722	6808	0.102120	CAAAGCGTGCCCTTGTTCAA	59.898	50.000	0.00	0.00	0.00	2.69
2723	6809	1.034838	ACAAAGCGTGCCCTTGTTCA	61.035	50.000	4.57	0.00	0.00	3.18
2735	6821	6.945072	AGTTACTCTTAAAGAACACAAAGCG	58.055	36.000	0.00	0.00	0.00	4.68
2766	6852	0.449786	CGTTGAAACGCATGGGCATA	59.550	50.000	10.10	0.00	46.06	3.14
2789	6875	2.229784	GCATGAGGGGTCACTTTTTCTG	59.770	50.000	0.00	0.00	0.00	3.02
2799	6885	0.107945	GAGAGTGTGCATGAGGGGTC	60.108	60.000	0.00	0.00	0.00	4.46
2809	7699	3.037431	ACTGATGTCTTGAGAGTGTGC	57.963	47.619	0.00	0.00	0.00	4.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.