Multiple sequence alignment - TraesCS4A01G459200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G459200 chr4A 100.000 3358 0 0 1 3358 724781636 724784993 0.000000e+00 6202.0
1 TraesCS4A01G459200 chr4A 86.210 1182 96 20 998 2157 724580124 724578988 0.000000e+00 1218.0
2 TraesCS4A01G459200 chr4A 81.783 1548 155 52 1385 2900 724399909 724398457 0.000000e+00 1179.0
3 TraesCS4A01G459200 chr4A 95.273 275 13 0 998 1272 724400263 724399989 1.430000e-118 436.0
4 TraesCS4A01G459200 chr4A 80.616 552 70 23 2507 3040 724578761 724578229 3.140000e-105 392.0
5 TraesCS4A01G459200 chr4A 82.161 398 37 22 594 970 724400648 724400264 9.050000e-81 311.0
6 TraesCS4A01G459200 chr4A 85.577 208 22 4 2240 2441 724578964 724578759 9.440000e-51 211.0
7 TraesCS4A01G459200 chr4A 93.182 88 4 1 3273 3358 724398398 724398311 9.780000e-26 128.0
8 TraesCS4A01G459200 chr7D 91.791 3021 130 45 422 3358 13030117 13027131 0.000000e+00 4096.0
9 TraesCS4A01G459200 chr7D 84.535 2302 216 72 700 2943 13098457 13096238 0.000000e+00 2150.0
10 TraesCS4A01G459200 chr7D 86.052 1355 122 31 1328 2659 13066906 13065596 0.000000e+00 1393.0
11 TraesCS4A01G459200 chr7D 89.871 622 23 12 733 1326 13067804 13067195 0.000000e+00 763.0
12 TraesCS4A01G459200 chr7D 84.335 632 42 21 163 779 13068412 13067823 1.750000e-157 566.0
13 TraesCS4A01G459200 chr7D 92.949 156 10 1 2703 2858 13065584 13065430 3.370000e-55 226.0
14 TraesCS4A01G459200 chr7A 89.811 3278 159 73 163 3358 12430456 12427272 0.000000e+00 4041.0
15 TraesCS4A01G459200 chr7A 85.398 2397 193 79 647 2968 12455705 12453391 0.000000e+00 2342.0
16 TraesCS4A01G459200 chr7A 84.904 1762 165 45 700 2429 12653025 12651333 0.000000e+00 1687.0
17 TraesCS4A01G459200 chr7A 88.710 124 5 4 519 639 12457565 12457448 3.490000e-30 143.0
18 TraesCS4A01G459200 chr7A 94.444 54 3 0 1356 1409 653589919 653589972 2.150000e-12 84.2
19 TraesCS4A01G459200 chr4D 91.163 2546 126 39 700 3177 506607452 506604938 0.000000e+00 3363.0
20 TraesCS4A01G459200 chr4D 96.067 178 5 1 3181 3358 506604854 506604679 4.240000e-74 289.0
21 TraesCS4A01G459200 chr2A 90.789 76 5 2 1333 1407 607841872 607841798 2.130000e-17 100.0
22 TraesCS4A01G459200 chr3A 88.158 76 9 0 1332 1407 633922470 633922545 1.280000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G459200 chr4A 724781636 724784993 3357 False 6202.0 6202 100.000000 1 3358 1 chr4A.!!$F1 3357
1 TraesCS4A01G459200 chr4A 724578229 724580124 1895 True 607.0 1218 84.134333 998 3040 3 chr4A.!!$R2 2042
2 TraesCS4A01G459200 chr4A 724398311 724400648 2337 True 513.5 1179 88.099750 594 3358 4 chr4A.!!$R1 2764
3 TraesCS4A01G459200 chr7D 13027131 13030117 2986 True 4096.0 4096 91.791000 422 3358 1 chr7D.!!$R1 2936
4 TraesCS4A01G459200 chr7D 13096238 13098457 2219 True 2150.0 2150 84.535000 700 2943 1 chr7D.!!$R2 2243
5 TraesCS4A01G459200 chr7D 13065430 13068412 2982 True 737.0 1393 88.301750 163 2858 4 chr7D.!!$R3 2695
6 TraesCS4A01G459200 chr7A 12427272 12430456 3184 True 4041.0 4041 89.811000 163 3358 1 chr7A.!!$R1 3195
7 TraesCS4A01G459200 chr7A 12651333 12653025 1692 True 1687.0 1687 84.904000 700 2429 1 chr7A.!!$R2 1729
8 TraesCS4A01G459200 chr7A 12453391 12457565 4174 True 1242.5 2342 87.054000 519 2968 2 chr7A.!!$R3 2449
9 TraesCS4A01G459200 chr4D 506604679 506607452 2773 True 1826.0 3363 93.615000 700 3358 2 chr4D.!!$R1 2658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.034896 ACGCTTCCTGTACTTGTGGG 59.965 55.0 0.00 0.0 0.0 4.61 F
27 28 0.036875 GCTTCCTGTACTTGTGGGCT 59.963 55.0 0.00 0.0 0.0 5.19 F
558 569 0.037697 ACACACACGTACGCCATCAT 60.038 50.0 16.72 0.0 0.0 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1326 3250 0.179067 GACGACCACCTGAACCAACA 60.179 55.000 0.0 0.0 0.0 3.33 R
1945 4181 0.319813 GCCATTGTTGTTGCAGTCCC 60.320 55.000 0.0 0.0 0.0 4.46 R
2425 4711 1.402968 CCGAAGTGCATCCAATCCAAG 59.597 52.381 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.354155 GCACACACGCTTCCTGTA 57.646 55.556 0.00 0.00 0.00 2.74
18 19 1.860078 GCACACACGCTTCCTGTAC 59.140 57.895 0.00 0.00 0.00 2.90
19 20 0.600255 GCACACACGCTTCCTGTACT 60.600 55.000 0.00 0.00 0.00 2.73
20 21 1.865865 CACACACGCTTCCTGTACTT 58.134 50.000 0.00 0.00 0.00 2.24
21 22 1.526887 CACACACGCTTCCTGTACTTG 59.473 52.381 0.00 0.00 0.00 3.16
22 23 1.138266 ACACACGCTTCCTGTACTTGT 59.862 47.619 0.00 0.00 0.00 3.16
23 24 1.526887 CACACGCTTCCTGTACTTGTG 59.473 52.381 0.00 0.00 0.00 3.33
24 25 1.148310 CACGCTTCCTGTACTTGTGG 58.852 55.000 0.00 0.00 0.00 4.17
25 26 0.034896 ACGCTTCCTGTACTTGTGGG 59.965 55.000 0.00 0.00 0.00 4.61
26 27 1.298859 CGCTTCCTGTACTTGTGGGC 61.299 60.000 0.00 0.00 0.00 5.36
27 28 0.036875 GCTTCCTGTACTTGTGGGCT 59.963 55.000 0.00 0.00 0.00 5.19
28 29 1.946283 GCTTCCTGTACTTGTGGGCTC 60.946 57.143 0.00 0.00 0.00 4.70
29 30 1.625818 CTTCCTGTACTTGTGGGCTCT 59.374 52.381 0.00 0.00 0.00 4.09
30 31 2.615986 TCCTGTACTTGTGGGCTCTA 57.384 50.000 0.00 0.00 0.00 2.43
31 32 3.116096 TCCTGTACTTGTGGGCTCTAT 57.884 47.619 0.00 0.00 0.00 1.98
32 33 4.259933 TCCTGTACTTGTGGGCTCTATA 57.740 45.455 0.00 0.00 0.00 1.31
33 34 4.215908 TCCTGTACTTGTGGGCTCTATAG 58.784 47.826 0.00 0.00 0.00 1.31
34 35 4.079385 TCCTGTACTTGTGGGCTCTATAGA 60.079 45.833 1.69 1.69 0.00 1.98
35 36 4.835615 CCTGTACTTGTGGGCTCTATAGAT 59.164 45.833 2.11 0.00 0.00 1.98
36 37 5.047660 CCTGTACTTGTGGGCTCTATAGATC 60.048 48.000 2.11 0.00 0.00 2.75
37 38 4.833380 TGTACTTGTGGGCTCTATAGATCC 59.167 45.833 13.35 13.35 0.00 3.36
38 39 2.894126 ACTTGTGGGCTCTATAGATCCG 59.106 50.000 14.91 5.08 31.34 4.18
39 40 1.257743 TGTGGGCTCTATAGATCCGC 58.742 55.000 20.36 20.36 31.34 5.54
40 41 0.171455 GTGGGCTCTATAGATCCGCG 59.829 60.000 14.91 0.00 31.34 6.46
41 42 0.037734 TGGGCTCTATAGATCCGCGA 59.962 55.000 8.23 0.00 31.34 5.87
42 43 1.174783 GGGCTCTATAGATCCGCGAA 58.825 55.000 8.23 0.00 31.34 4.70
43 44 1.751924 GGGCTCTATAGATCCGCGAAT 59.248 52.381 8.23 0.00 31.34 3.34
44 45 2.480416 GGGCTCTATAGATCCGCGAATG 60.480 54.545 8.23 0.00 31.34 2.67
45 46 2.189342 GCTCTATAGATCCGCGAATGC 58.811 52.381 8.23 0.00 37.91 3.56
46 47 2.803451 CTCTATAGATCCGCGAATGCC 58.197 52.381 8.23 0.00 38.08 4.40
47 48 1.132453 TCTATAGATCCGCGAATGCCG 59.868 52.381 8.23 0.00 38.08 5.69
64 65 2.488355 GCTATATCGCGCCGGCTA 59.512 61.111 26.68 10.59 36.88 3.93
65 66 1.586564 GCTATATCGCGCCGGCTAG 60.587 63.158 26.68 18.59 36.88 3.42
66 67 1.586564 CTATATCGCGCCGGCTAGC 60.587 63.158 26.68 20.63 36.88 3.42
67 68 1.994507 CTATATCGCGCCGGCTAGCT 61.995 60.000 26.68 12.12 36.88 3.32
68 69 2.266376 TATATCGCGCCGGCTAGCTG 62.266 60.000 26.68 17.14 36.88 4.24
74 75 4.767255 GCCGGCTAGCTGCACTGT 62.767 66.667 22.15 0.00 45.15 3.55
75 76 2.816958 CCGGCTAGCTGCACTGTG 60.817 66.667 18.67 2.76 45.15 3.66
76 77 2.816958 CGGCTAGCTGCACTGTGG 60.817 66.667 15.72 0.00 45.15 4.17
77 78 2.437359 GGCTAGCTGCACTGTGGG 60.437 66.667 15.72 0.00 45.15 4.61
78 79 3.130160 GCTAGCTGCACTGTGGGC 61.130 66.667 7.70 0.00 42.31 5.36
79 80 2.437359 CTAGCTGCACTGTGGGCC 60.437 66.667 10.21 0.00 0.00 5.80
80 81 2.930019 TAGCTGCACTGTGGGCCT 60.930 61.111 10.21 0.00 0.00 5.19
81 82 1.612146 TAGCTGCACTGTGGGCCTA 60.612 57.895 10.21 0.00 0.00 3.93
82 83 1.617018 TAGCTGCACTGTGGGCCTAG 61.617 60.000 10.21 5.92 0.00 3.02
83 84 2.270205 CTGCACTGTGGGCCTAGG 59.730 66.667 10.21 3.67 0.00 3.02
84 85 3.329889 TGCACTGTGGGCCTAGGG 61.330 66.667 11.72 5.60 0.00 3.53
95 96 1.294780 GCCTAGGGCCAGATCATCG 59.705 63.158 11.72 0.00 44.06 3.84
96 97 1.476007 GCCTAGGGCCAGATCATCGT 61.476 60.000 11.72 0.00 44.06 3.73
97 98 0.605589 CCTAGGGCCAGATCATCGTC 59.394 60.000 6.18 0.00 0.00 4.20
98 99 0.242286 CTAGGGCCAGATCATCGTCG 59.758 60.000 6.18 0.00 0.00 5.12
99 100 0.179001 TAGGGCCAGATCATCGTCGA 60.179 55.000 6.18 0.00 0.00 4.20
100 101 0.829602 AGGGCCAGATCATCGTCGAT 60.830 55.000 6.18 0.75 0.00 3.59
101 102 0.389166 GGGCCAGATCATCGTCGATC 60.389 60.000 4.39 8.26 41.85 3.69
102 103 0.730834 GGCCAGATCATCGTCGATCG 60.731 60.000 9.36 9.36 45.39 3.69
103 104 0.039978 GCCAGATCATCGTCGATCGT 60.040 55.000 15.94 0.00 45.39 3.73
104 105 1.957089 CCAGATCATCGTCGATCGTC 58.043 55.000 15.94 8.82 45.39 4.20
105 106 1.533299 CCAGATCATCGTCGATCGTCT 59.467 52.381 15.94 8.72 45.39 4.18
106 107 2.031595 CCAGATCATCGTCGATCGTCTT 60.032 50.000 15.94 0.00 45.39 3.01
107 108 3.222361 CAGATCATCGTCGATCGTCTTC 58.778 50.000 15.94 3.91 45.39 2.87
108 109 2.224549 AGATCATCGTCGATCGTCTTCC 59.775 50.000 15.94 0.00 45.39 3.46
109 110 1.664873 TCATCGTCGATCGTCTTCCT 58.335 50.000 15.94 0.00 40.80 3.36
110 111 1.598132 TCATCGTCGATCGTCTTCCTC 59.402 52.381 15.94 0.00 40.80 3.71
111 112 0.945813 ATCGTCGATCGTCTTCCTCC 59.054 55.000 15.94 0.00 40.80 4.30
112 113 0.392060 TCGTCGATCGTCTTCCTCCA 60.392 55.000 15.94 0.00 40.80 3.86
113 114 0.248134 CGTCGATCGTCTTCCTCCAC 60.248 60.000 15.94 1.24 34.52 4.02
114 115 0.809385 GTCGATCGTCTTCCTCCACA 59.191 55.000 15.94 0.00 0.00 4.17
115 116 1.405821 GTCGATCGTCTTCCTCCACAT 59.594 52.381 15.94 0.00 0.00 3.21
116 117 2.617308 GTCGATCGTCTTCCTCCACATA 59.383 50.000 15.94 0.00 0.00 2.29
117 118 2.617308 TCGATCGTCTTCCTCCACATAC 59.383 50.000 15.94 0.00 0.00 2.39
118 119 2.287668 CGATCGTCTTCCTCCACATACC 60.288 54.545 7.03 0.00 0.00 2.73
119 120 1.481871 TCGTCTTCCTCCACATACCC 58.518 55.000 0.00 0.00 0.00 3.69
120 121 0.102481 CGTCTTCCTCCACATACCCG 59.898 60.000 0.00 0.00 0.00 5.28
121 122 0.179081 GTCTTCCTCCACATACCCGC 60.179 60.000 0.00 0.00 0.00 6.13
122 123 1.146263 CTTCCTCCACATACCCGCC 59.854 63.158 0.00 0.00 0.00 6.13
123 124 2.325393 CTTCCTCCACATACCCGCCC 62.325 65.000 0.00 0.00 0.00 6.13
124 125 3.873812 CCTCCACATACCCGCCCC 61.874 72.222 0.00 0.00 0.00 5.80
125 126 3.087253 CTCCACATACCCGCCCCA 61.087 66.667 0.00 0.00 0.00 4.96
126 127 2.367648 TCCACATACCCGCCCCAT 60.368 61.111 0.00 0.00 0.00 4.00
127 128 1.994885 CTCCACATACCCGCCCCATT 61.995 60.000 0.00 0.00 0.00 3.16
128 129 1.827789 CCACATACCCGCCCCATTG 60.828 63.158 0.00 0.00 0.00 2.82
129 130 1.077068 CACATACCCGCCCCATTGT 60.077 57.895 0.00 0.00 0.00 2.71
130 131 0.682855 CACATACCCGCCCCATTGTT 60.683 55.000 0.00 0.00 0.00 2.83
131 132 0.682855 ACATACCCGCCCCATTGTTG 60.683 55.000 0.00 0.00 0.00 3.33
132 133 0.682855 CATACCCGCCCCATTGTTGT 60.683 55.000 0.00 0.00 0.00 3.32
133 134 0.395173 ATACCCGCCCCATTGTTGTC 60.395 55.000 0.00 0.00 0.00 3.18
134 135 2.806503 TACCCGCCCCATTGTTGTCG 62.807 60.000 0.00 0.00 0.00 4.35
135 136 4.114997 CCGCCCCATTGTTGTCGC 62.115 66.667 0.00 0.00 0.00 5.19
136 137 4.114997 CGCCCCATTGTTGTCGCC 62.115 66.667 0.00 0.00 0.00 5.54
137 138 2.988684 GCCCCATTGTTGTCGCCA 60.989 61.111 0.00 0.00 0.00 5.69
138 139 2.569354 GCCCCATTGTTGTCGCCAA 61.569 57.895 0.00 0.00 0.00 4.52
139 140 1.887344 GCCCCATTGTTGTCGCCAAT 61.887 55.000 0.00 0.00 32.11 3.16
140 141 0.108709 CCCCATTGTTGTCGCCAATG 60.109 55.000 6.22 6.22 45.56 2.82
141 142 0.737019 CCCATTGTTGTCGCCAATGC 60.737 55.000 7.44 0.00 44.95 3.56
142 143 0.737019 CCATTGTTGTCGCCAATGCC 60.737 55.000 7.44 0.00 44.95 4.40
143 144 0.038435 CATTGTTGTCGCCAATGCCA 60.038 50.000 0.00 0.00 41.74 4.92
144 145 0.896923 ATTGTTGTCGCCAATGCCAT 59.103 45.000 0.00 0.00 31.52 4.40
145 146 0.678395 TTGTTGTCGCCAATGCCATT 59.322 45.000 0.00 0.00 32.11 3.16
146 147 0.678395 TGTTGTCGCCAATGCCATTT 59.322 45.000 0.00 0.00 32.11 2.32
147 148 1.069823 TGTTGTCGCCAATGCCATTTT 59.930 42.857 0.00 0.00 32.11 1.82
148 149 1.460359 GTTGTCGCCAATGCCATTTTG 59.540 47.619 0.00 0.00 32.11 2.44
149 150 0.669932 TGTCGCCAATGCCATTTTGC 60.670 50.000 0.00 0.00 0.00 3.68
150 151 1.079266 TCGCCAATGCCATTTTGCC 60.079 52.632 3.77 0.00 0.00 4.52
151 152 1.078988 CGCCAATGCCATTTTGCCT 60.079 52.632 3.77 0.00 0.00 4.75
152 153 1.085501 CGCCAATGCCATTTTGCCTC 61.086 55.000 3.77 0.00 0.00 4.70
153 154 0.745486 GCCAATGCCATTTTGCCTCC 60.745 55.000 0.00 0.00 0.00 4.30
154 155 0.614294 CCAATGCCATTTTGCCTCCA 59.386 50.000 0.00 0.00 0.00 3.86
155 156 1.676615 CCAATGCCATTTTGCCTCCAC 60.677 52.381 0.00 0.00 0.00 4.02
156 157 0.247185 AATGCCATTTTGCCTCCACG 59.753 50.000 0.00 0.00 0.00 4.94
157 158 2.125952 GCCATTTTGCCTCCACGC 60.126 61.111 0.00 0.00 0.00 5.34
158 159 2.639327 GCCATTTTGCCTCCACGCT 61.639 57.895 0.00 0.00 0.00 5.07
159 160 1.966762 CCATTTTGCCTCCACGCTT 59.033 52.632 0.00 0.00 0.00 4.68
160 161 0.318120 CCATTTTGCCTCCACGCTTT 59.682 50.000 0.00 0.00 0.00 3.51
161 162 1.421382 CATTTTGCCTCCACGCTTTG 58.579 50.000 0.00 0.00 0.00 2.77
168 169 1.596934 CTCCACGCTTTGCCTCCTA 59.403 57.895 0.00 0.00 0.00 2.94
169 170 0.179000 CTCCACGCTTTGCCTCCTAT 59.821 55.000 0.00 0.00 0.00 2.57
179 180 4.540715 CTTTGCCTCCTATTTCCTCCATT 58.459 43.478 0.00 0.00 0.00 3.16
183 184 4.956075 TGCCTCCTATTTCCTCCATTTTTC 59.044 41.667 0.00 0.00 0.00 2.29
372 373 3.558931 ATGTGATTCTCATAACGGCCA 57.441 42.857 2.24 0.00 0.00 5.36
383 384 5.123186 TCTCATAACGGCCAATAAACAACTG 59.877 40.000 2.24 0.00 0.00 3.16
399 400 7.865706 AAACAACTGATTCTAGTTCACTTGT 57.134 32.000 12.77 12.77 38.78 3.16
484 488 4.602340 ACGTATACTTGATCCATCCACC 57.398 45.455 0.56 0.00 0.00 4.61
485 489 3.964688 ACGTATACTTGATCCATCCACCA 59.035 43.478 0.56 0.00 0.00 4.17
486 490 4.202223 ACGTATACTTGATCCATCCACCAC 60.202 45.833 0.56 0.00 0.00 4.16
539 550 3.088532 ACAACAAGAGGCAACAAGACAA 58.911 40.909 0.00 0.00 41.41 3.18
557 568 0.249531 AACACACACGTACGCCATCA 60.250 50.000 16.72 0.00 0.00 3.07
558 569 0.037697 ACACACACGTACGCCATCAT 60.038 50.000 16.72 0.00 0.00 2.45
559 570 1.202817 ACACACACGTACGCCATCATA 59.797 47.619 16.72 0.00 0.00 2.15
560 571 2.159156 ACACACACGTACGCCATCATAT 60.159 45.455 16.72 0.00 0.00 1.78
641 655 2.107950 AGTCAGAGAGAGACAGACGG 57.892 55.000 0.00 0.00 38.46 4.79
642 656 1.626321 AGTCAGAGAGAGACAGACGGA 59.374 52.381 0.00 0.00 38.46 4.69
645 659 2.093711 TCAGAGAGAGACAGACGGAGAG 60.094 54.545 0.00 0.00 0.00 3.20
647 661 2.168521 AGAGAGAGACAGACGGAGAGAG 59.831 54.545 0.00 0.00 0.00 3.20
648 662 2.167693 GAGAGAGACAGACGGAGAGAGA 59.832 54.545 0.00 0.00 0.00 3.10
649 663 2.168521 AGAGAGACAGACGGAGAGAGAG 59.831 54.545 0.00 0.00 0.00 3.20
650 664 2.167693 GAGAGACAGACGGAGAGAGAGA 59.832 54.545 0.00 0.00 0.00 3.10
651 665 2.168521 AGAGACAGACGGAGAGAGAGAG 59.831 54.545 0.00 0.00 0.00 3.20
652 666 2.167693 GAGACAGACGGAGAGAGAGAGA 59.832 54.545 0.00 0.00 0.00 3.10
653 667 2.168521 AGACAGACGGAGAGAGAGAGAG 59.831 54.545 0.00 0.00 0.00 3.20
654 668 2.167693 GACAGACGGAGAGAGAGAGAGA 59.832 54.545 0.00 0.00 0.00 3.10
663 2412 4.837860 GGAGAGAGAGAGAGAGAGAGAGAT 59.162 50.000 0.00 0.00 0.00 2.75
664 2415 5.306678 GGAGAGAGAGAGAGAGAGAGAGATT 59.693 48.000 0.00 0.00 0.00 2.40
665 2416 6.183361 GGAGAGAGAGAGAGAGAGAGAGATTT 60.183 46.154 0.00 0.00 0.00 2.17
695 2446 3.838565 AGAGAGAGAAACACAGAGGTCA 58.161 45.455 0.00 0.00 0.00 4.02
708 2515 4.635765 CACAGAGGTCACTAGAGAGAGAAG 59.364 50.000 0.00 0.00 0.00 2.85
710 2517 2.612212 GAGGTCACTAGAGAGAGAAGCG 59.388 54.545 0.00 0.00 0.00 4.68
735 2542 4.134563 GAGGTCGCTAGAGAGAGAAAGAT 58.865 47.826 0.00 0.00 32.85 2.40
843 2702 3.036577 CCATGCACGCATCATCCC 58.963 61.111 0.44 0.00 33.90 3.85
844 2703 1.824760 CCATGCACGCATCATCCCA 60.825 57.895 0.44 0.00 33.90 4.37
846 2705 1.825191 ATGCACGCATCATCCCACC 60.825 57.895 0.00 0.00 29.42 4.61
848 2707 2.896854 CACGCATCATCCCACCCG 60.897 66.667 0.00 0.00 0.00 5.28
849 2708 4.175337 ACGCATCATCCCACCCGG 62.175 66.667 0.00 0.00 0.00 5.73
940 2821 1.956170 CCGGCCATTGCTAGCTACG 60.956 63.158 17.23 8.03 37.74 3.51
992 2879 6.482973 AGACAAAGAAAGAGAAGAAGCTCAAG 59.517 38.462 0.00 0.00 37.37 3.02
1273 3184 1.001633 TCCTCGGCAACAAGTAAGTCC 59.998 52.381 0.00 0.00 0.00 3.85
1326 3250 4.760047 GCGCCGGTGACTGATGGT 62.760 66.667 21.76 0.00 0.00 3.55
1945 4181 2.671619 AATGGTGGCCAACGACCG 60.672 61.111 17.89 0.00 36.95 4.79
2170 4438 8.224025 ACTTTTCCATCCACCCAAATAATTTTT 58.776 29.630 0.00 0.00 0.00 1.94
2222 4497 9.487442 TGTGCCTTTTCCTTAATCCTAATTTAT 57.513 29.630 0.00 0.00 0.00 1.40
2425 4711 7.504238 TCAGGAGGAGACTGAGACTATTAATTC 59.496 40.741 0.00 0.00 44.43 2.17
2443 4729 4.996788 ATTCTTGGATTGGATGCACTTC 57.003 40.909 0.00 0.00 0.00 3.01
2444 4730 2.358957 TCTTGGATTGGATGCACTTCG 58.641 47.619 0.00 0.00 0.00 3.79
2671 4974 6.154445 AGCTTGTGACATAAATTGAAAGCAG 58.846 36.000 6.81 0.00 40.88 4.24
2706 5009 3.561310 AGACAGCAAAGTATGTGTGTGTG 59.439 43.478 0.00 0.00 31.06 3.82
2810 5119 2.058798 TGCGTGAAGAAGCTAAACTCG 58.941 47.619 0.00 0.00 0.00 4.18
2831 5140 3.242739 CGGGTCGTCATTTGATTGGATTC 60.243 47.826 0.00 0.00 0.00 2.52
2865 5176 1.052617 TCCCACGATGTTGGTCTTGA 58.947 50.000 0.00 0.00 34.44 3.02
2900 5211 5.999205 AGTCTTCACTGTGATCAATCTCT 57.001 39.130 11.86 1.65 0.00 3.10
3018 5344 5.124617 CAGAGAAGACATAGTCTGCACTGTA 59.875 44.000 18.71 0.00 45.47 2.74
3022 5348 2.428890 GACATAGTCTGCACTGTAGGCT 59.571 50.000 6.49 6.49 33.62 4.58
3031 5357 3.230134 TGCACTGTAGGCTTTCCATTTT 58.770 40.909 0.00 0.00 33.74 1.82
3033 5359 3.255642 GCACTGTAGGCTTTCCATTTTGA 59.744 43.478 0.00 0.00 33.74 2.69
3044 5370 7.402941 AGGCTTTCCATTTTGAATTAGGGTATT 59.597 33.333 0.00 0.00 33.74 1.89
3200 5613 6.893583 AGCTAGCTTTGATTAATTCCTCTGA 58.106 36.000 12.68 0.00 0.00 3.27
3245 5658 3.262420 CGAGGTTACTTGTTGGATGAGG 58.738 50.000 0.00 0.00 0.00 3.86
3338 5754 5.666969 TGATAGCATGCAAACGGTATAAC 57.333 39.130 21.98 0.09 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.600255 AGTACAGGAAGCGTGTGTGC 60.600 55.000 0.00 0.00 34.30 4.57
1 2 1.526887 CAAGTACAGGAAGCGTGTGTG 59.473 52.381 0.00 0.00 34.30 3.82
2 3 1.138266 ACAAGTACAGGAAGCGTGTGT 59.862 47.619 0.00 0.00 34.30 3.72
3 4 1.526887 CACAAGTACAGGAAGCGTGTG 59.473 52.381 0.00 0.00 36.61 3.82
5 6 1.148310 CCACAAGTACAGGAAGCGTG 58.852 55.000 0.00 0.00 0.00 5.34
6 7 0.034896 CCCACAAGTACAGGAAGCGT 59.965 55.000 0.00 0.00 0.00 5.07
7 8 1.298859 GCCCACAAGTACAGGAAGCG 61.299 60.000 0.00 0.00 0.00 4.68
8 9 0.036875 AGCCCACAAGTACAGGAAGC 59.963 55.000 0.00 0.00 0.00 3.86
9 10 1.625818 AGAGCCCACAAGTACAGGAAG 59.374 52.381 0.00 0.00 0.00 3.46
10 11 1.729586 AGAGCCCACAAGTACAGGAA 58.270 50.000 0.00 0.00 0.00 3.36
11 12 2.615986 TAGAGCCCACAAGTACAGGA 57.384 50.000 0.00 0.00 0.00 3.86
12 13 4.215908 TCTATAGAGCCCACAAGTACAGG 58.784 47.826 0.00 0.00 0.00 4.00
13 14 5.047660 GGATCTATAGAGCCCACAAGTACAG 60.048 48.000 24.02 0.00 44.46 2.74
14 15 4.833380 GGATCTATAGAGCCCACAAGTACA 59.167 45.833 24.02 0.00 44.46 2.90
15 16 5.394224 GGATCTATAGAGCCCACAAGTAC 57.606 47.826 24.02 0.00 44.46 2.73
24 25 2.803451 CATTCGCGGATCTATAGAGCC 58.197 52.381 24.49 24.49 46.58 4.70
25 26 2.189342 GCATTCGCGGATCTATAGAGC 58.811 52.381 9.58 9.58 0.00 4.09
26 27 2.792890 CGGCATTCGCGGATCTATAGAG 60.793 54.545 6.13 0.00 40.76 2.43
27 28 1.132453 CGGCATTCGCGGATCTATAGA 59.868 52.381 6.13 4.57 40.76 1.98
28 29 1.550065 CGGCATTCGCGGATCTATAG 58.450 55.000 6.13 0.00 40.76 1.31
29 30 3.713936 CGGCATTCGCGGATCTATA 57.286 52.632 6.13 0.00 40.76 1.31
30 31 4.578913 CGGCATTCGCGGATCTAT 57.421 55.556 6.13 0.00 40.76 1.98
47 48 1.586564 CTAGCCGGCGCGATATAGC 60.587 63.158 23.20 4.37 41.18 2.97
48 49 1.586564 GCTAGCCGGCGCGATATAG 60.587 63.158 23.20 16.93 41.18 1.31
49 50 2.044555 AGCTAGCCGGCGCGATATA 61.045 57.895 23.20 5.64 41.18 0.86
50 51 3.374402 AGCTAGCCGGCGCGATAT 61.374 61.111 23.20 4.49 41.18 1.63
51 52 4.342987 CAGCTAGCCGGCGCGATA 62.343 66.667 23.20 6.90 41.18 2.92
57 58 4.767255 ACAGTGCAGCTAGCCGGC 62.767 66.667 21.89 21.89 44.83 6.13
58 59 2.816958 CACAGTGCAGCTAGCCGG 60.817 66.667 12.13 5.25 44.83 6.13
59 60 2.816958 CCACAGTGCAGCTAGCCG 60.817 66.667 12.13 1.20 44.83 5.52
60 61 2.437359 CCCACAGTGCAGCTAGCC 60.437 66.667 12.13 0.00 44.83 3.93
61 62 3.130160 GCCCACAGTGCAGCTAGC 61.130 66.667 6.62 6.62 45.96 3.42
62 63 1.617018 TAGGCCCACAGTGCAGCTAG 61.617 60.000 0.00 0.00 0.00 3.42
63 64 1.612146 TAGGCCCACAGTGCAGCTA 60.612 57.895 0.00 2.78 0.00 3.32
64 65 2.930019 TAGGCCCACAGTGCAGCT 60.930 61.111 0.00 0.00 0.00 4.24
65 66 2.437359 CTAGGCCCACAGTGCAGC 60.437 66.667 0.00 5.43 0.00 5.25
66 67 2.270205 CCTAGGCCCACAGTGCAG 59.730 66.667 0.00 0.00 0.00 4.41
67 68 3.329889 CCCTAGGCCCACAGTGCA 61.330 66.667 2.05 0.00 0.00 4.57
68 69 4.803908 GCCCTAGGCCCACAGTGC 62.804 72.222 2.05 0.00 44.06 4.40
78 79 0.605589 GACGATGATCTGGCCCTAGG 59.394 60.000 0.06 0.06 0.00 3.02
79 80 0.242286 CGACGATGATCTGGCCCTAG 59.758 60.000 0.00 0.00 0.00 3.02
80 81 0.179001 TCGACGATGATCTGGCCCTA 60.179 55.000 0.00 0.00 0.00 3.53
81 82 0.829602 ATCGACGATGATCTGGCCCT 60.830 55.000 10.09 0.00 0.00 5.19
82 83 0.389166 GATCGACGATGATCTGGCCC 60.389 60.000 16.49 0.00 41.26 5.80
83 84 0.730834 CGATCGACGATGATCTGGCC 60.731 60.000 16.49 0.00 45.77 5.36
84 85 0.039978 ACGATCGACGATGATCTGGC 60.040 55.000 24.34 0.00 45.77 4.85
85 86 1.533299 AGACGATCGACGATGATCTGG 59.467 52.381 24.34 0.00 45.77 3.86
86 87 2.959548 AGACGATCGACGATGATCTG 57.040 50.000 24.34 2.36 45.77 2.90
87 88 2.224549 GGAAGACGATCGACGATGATCT 59.775 50.000 24.34 14.08 45.77 2.75
88 89 2.224549 AGGAAGACGATCGACGATGATC 59.775 50.000 24.34 12.00 45.77 2.92
89 90 2.222886 AGGAAGACGATCGACGATGAT 58.777 47.619 24.34 2.27 45.77 2.45
90 91 1.598132 GAGGAAGACGATCGACGATGA 59.402 52.381 24.34 0.00 45.77 2.92
91 92 1.334239 GGAGGAAGACGATCGACGATG 60.334 57.143 24.34 10.09 45.77 3.84
92 93 0.945813 GGAGGAAGACGATCGACGAT 59.054 55.000 24.34 10.78 45.77 3.73
93 94 0.392060 TGGAGGAAGACGATCGACGA 60.392 55.000 24.34 0.00 45.77 4.20
95 96 0.809385 TGTGGAGGAAGACGATCGAC 59.191 55.000 24.34 16.66 0.00 4.20
96 97 1.763968 ATGTGGAGGAAGACGATCGA 58.236 50.000 24.34 0.00 0.00 3.59
97 98 2.287668 GGTATGTGGAGGAAGACGATCG 60.288 54.545 14.88 14.88 0.00 3.69
98 99 2.036089 GGGTATGTGGAGGAAGACGATC 59.964 54.545 0.00 0.00 0.00 3.69
99 100 2.040178 GGGTATGTGGAGGAAGACGAT 58.960 52.381 0.00 0.00 0.00 3.73
100 101 1.481871 GGGTATGTGGAGGAAGACGA 58.518 55.000 0.00 0.00 0.00 4.20
101 102 0.102481 CGGGTATGTGGAGGAAGACG 59.898 60.000 0.00 0.00 0.00 4.18
102 103 0.179081 GCGGGTATGTGGAGGAAGAC 60.179 60.000 0.00 0.00 0.00 3.01
103 104 1.335132 GGCGGGTATGTGGAGGAAGA 61.335 60.000 0.00 0.00 0.00 2.87
104 105 1.146263 GGCGGGTATGTGGAGGAAG 59.854 63.158 0.00 0.00 0.00 3.46
105 106 2.372074 GGGCGGGTATGTGGAGGAA 61.372 63.158 0.00 0.00 0.00 3.36
106 107 2.766651 GGGCGGGTATGTGGAGGA 60.767 66.667 0.00 0.00 0.00 3.71
107 108 3.873812 GGGGCGGGTATGTGGAGG 61.874 72.222 0.00 0.00 0.00 4.30
108 109 1.994885 AATGGGGCGGGTATGTGGAG 61.995 60.000 0.00 0.00 0.00 3.86
109 110 2.004120 AATGGGGCGGGTATGTGGA 61.004 57.895 0.00 0.00 0.00 4.02
110 111 1.827789 CAATGGGGCGGGTATGTGG 60.828 63.158 0.00 0.00 0.00 4.17
111 112 0.682855 AACAATGGGGCGGGTATGTG 60.683 55.000 0.00 0.00 0.00 3.21
112 113 0.682855 CAACAATGGGGCGGGTATGT 60.683 55.000 0.00 0.00 0.00 2.29
113 114 0.682855 ACAACAATGGGGCGGGTATG 60.683 55.000 0.00 0.00 0.00 2.39
114 115 0.395173 GACAACAATGGGGCGGGTAT 60.395 55.000 0.00 0.00 0.00 2.73
115 116 1.001887 GACAACAATGGGGCGGGTA 60.002 57.895 0.00 0.00 0.00 3.69
116 117 2.282887 GACAACAATGGGGCGGGT 60.283 61.111 0.00 0.00 0.00 5.28
117 118 3.439540 CGACAACAATGGGGCGGG 61.440 66.667 0.00 0.00 0.00 6.13
118 119 4.114997 GCGACAACAATGGGGCGG 62.115 66.667 4.71 0.00 0.00 6.13
119 120 4.114997 GGCGACAACAATGGGGCG 62.115 66.667 0.00 0.00 31.81 6.13
120 121 2.988684 TGGCGACAACAATGGGGC 60.989 61.111 0.00 0.00 37.44 5.80
130 131 0.669932 GCAAAATGGCATTGGCGACA 60.670 50.000 14.47 0.00 42.47 4.35
131 132 1.360931 GGCAAAATGGCATTGGCGAC 61.361 55.000 22.80 11.10 42.36 5.19
132 133 1.079266 GGCAAAATGGCATTGGCGA 60.079 52.632 22.80 0.00 42.36 5.54
133 134 3.488573 GGCAAAATGGCATTGGCG 58.511 55.556 22.80 12.92 42.36 5.69
135 136 0.614294 TGGAGGCAAAATGGCATTGG 59.386 50.000 14.47 10.42 46.46 3.16
136 137 1.729284 GTGGAGGCAAAATGGCATTG 58.271 50.000 14.47 4.86 46.46 2.82
137 138 0.247185 CGTGGAGGCAAAATGGCATT 59.753 50.000 6.96 6.96 46.46 3.56
138 139 1.892338 CGTGGAGGCAAAATGGCAT 59.108 52.632 6.68 0.00 46.46 4.40
139 140 2.929903 GCGTGGAGGCAAAATGGCA 61.930 57.895 6.68 0.00 46.46 4.92
140 141 2.125952 GCGTGGAGGCAAAATGGC 60.126 61.111 0.00 0.00 44.10 4.40
141 142 0.318120 AAAGCGTGGAGGCAAAATGG 59.682 50.000 0.00 0.00 34.64 3.16
142 143 1.421382 CAAAGCGTGGAGGCAAAATG 58.579 50.000 0.00 0.00 34.64 2.32
143 144 0.319813 GCAAAGCGTGGAGGCAAAAT 60.320 50.000 0.00 0.00 34.64 1.82
144 145 1.067250 GCAAAGCGTGGAGGCAAAA 59.933 52.632 0.00 0.00 34.64 2.44
145 146 2.727544 GCAAAGCGTGGAGGCAAA 59.272 55.556 0.00 0.00 34.64 3.68
146 147 3.294493 GGCAAAGCGTGGAGGCAA 61.294 61.111 0.00 0.00 34.64 4.52
147 148 4.269523 AGGCAAAGCGTGGAGGCA 62.270 61.111 0.00 0.00 34.64 4.75
148 149 3.435186 GAGGCAAAGCGTGGAGGC 61.435 66.667 0.00 0.00 0.00 4.70
149 150 1.899437 TAGGAGGCAAAGCGTGGAGG 61.899 60.000 0.00 0.00 0.00 4.30
150 151 0.179000 ATAGGAGGCAAAGCGTGGAG 59.821 55.000 0.00 0.00 0.00 3.86
151 152 0.618458 AATAGGAGGCAAAGCGTGGA 59.382 50.000 0.00 0.00 0.00 4.02
152 153 1.401905 GAAATAGGAGGCAAAGCGTGG 59.598 52.381 0.00 0.00 0.00 4.94
153 154 1.401905 GGAAATAGGAGGCAAAGCGTG 59.598 52.381 0.00 0.00 0.00 5.34
154 155 1.282157 AGGAAATAGGAGGCAAAGCGT 59.718 47.619 0.00 0.00 0.00 5.07
155 156 1.943340 GAGGAAATAGGAGGCAAAGCG 59.057 52.381 0.00 0.00 0.00 4.68
156 157 2.302260 GGAGGAAATAGGAGGCAAAGC 58.698 52.381 0.00 0.00 0.00 3.51
157 158 3.652057 TGGAGGAAATAGGAGGCAAAG 57.348 47.619 0.00 0.00 0.00 2.77
158 159 4.608170 AATGGAGGAAATAGGAGGCAAA 57.392 40.909 0.00 0.00 0.00 3.68
159 160 4.608170 AAATGGAGGAAATAGGAGGCAA 57.392 40.909 0.00 0.00 0.00 4.52
160 161 4.608170 AAAATGGAGGAAATAGGAGGCA 57.392 40.909 0.00 0.00 0.00 4.75
161 162 5.204292 AGAAAAATGGAGGAAATAGGAGGC 58.796 41.667 0.00 0.00 0.00 4.70
168 169 9.997172 AGTATAAGGAAGAAAAATGGAGGAAAT 57.003 29.630 0.00 0.00 0.00 2.17
169 170 9.822727 AAGTATAAGGAAGAAAAATGGAGGAAA 57.177 29.630 0.00 0.00 0.00 3.13
179 180 7.333672 GCGAGGAAGAAAGTATAAGGAAGAAAA 59.666 37.037 0.00 0.00 0.00 2.29
183 184 5.908341 AGCGAGGAAGAAAGTATAAGGAAG 58.092 41.667 0.00 0.00 0.00 3.46
295 296 7.303182 TCTTGATGTCGAATACTCCCATATT 57.697 36.000 0.00 0.00 0.00 1.28
300 301 7.378966 TGAATATCTTGATGTCGAATACTCCC 58.621 38.462 0.00 0.00 0.00 4.30
366 367 4.079253 AGAATCAGTTGTTTATTGGCCGT 58.921 39.130 0.00 0.00 0.00 5.68
368 369 6.759497 ACTAGAATCAGTTGTTTATTGGCC 57.241 37.500 0.00 0.00 0.00 5.36
383 384 6.486253 TGCATGAACAAGTGAACTAGAATC 57.514 37.500 0.00 0.00 0.00 2.52
438 439 3.183754 GCGTATATGCATGCATACCGTA 58.816 45.455 36.46 26.84 41.09 4.02
442 443 5.190342 CGTATTGCGTATATGCATGCATAC 58.810 41.667 36.22 27.49 45.78 2.39
539 550 0.037697 ATGATGGCGTACGTGTGTGT 60.038 50.000 17.90 0.00 0.00 3.72
573 584 5.347012 GCTTAAGCAGGTACGTTGTTTAA 57.653 39.130 22.59 13.45 41.59 1.52
641 655 6.418057 AATCTCTCTCTCTCTCTCTCTCTC 57.582 45.833 0.00 0.00 0.00 3.20
642 656 6.821616 AAATCTCTCTCTCTCTCTCTCTCT 57.178 41.667 0.00 0.00 0.00 3.10
645 659 7.957002 TCTCTAAATCTCTCTCTCTCTCTCTC 58.043 42.308 0.00 0.00 0.00 3.20
647 661 9.566432 AAATCTCTAAATCTCTCTCTCTCTCTC 57.434 37.037 0.00 0.00 0.00 3.20
664 2415 9.521841 TCTGTGTTTCTCTCTCTAAATCTCTAA 57.478 33.333 0.00 0.00 0.00 2.10
665 2416 9.173021 CTCTGTGTTTCTCTCTCTAAATCTCTA 57.827 37.037 0.00 0.00 0.00 2.43
687 2438 3.627577 GCTTCTCTCTCTAGTGACCTCTG 59.372 52.174 0.00 0.00 0.00 3.35
695 2446 2.158813 CCTCTCCGCTTCTCTCTCTAGT 60.159 54.545 0.00 0.00 0.00 2.57
710 2517 1.414919 TCTCTCTCTAGCGACCTCTCC 59.585 57.143 0.00 0.00 0.00 3.71
735 2542 4.390129 ACCCTCTCTGTTTCTCACTCTA 57.610 45.455 0.00 0.00 0.00 2.43
843 2702 2.271173 GTTTAGAGGGGCCGGGTG 59.729 66.667 2.18 0.00 0.00 4.61
844 2703 3.013327 GGTTTAGAGGGGCCGGGT 61.013 66.667 2.18 0.00 0.00 5.28
846 2705 2.266816 GAAGGGTTTAGAGGGGCCGG 62.267 65.000 0.00 0.00 0.00 6.13
848 2707 1.613610 GGAAGGGTTTAGAGGGGCC 59.386 63.158 0.00 0.00 0.00 5.80
849 2708 0.919780 AGGGAAGGGTTTAGAGGGGC 60.920 60.000 0.00 0.00 0.00 5.80
1218 3129 2.136298 TGATGAGCTTCTCCTCGTCT 57.864 50.000 11.37 0.00 44.48 4.18
1273 3184 4.750098 AGAAGACACAAACAATAGACACGG 59.250 41.667 0.00 0.00 0.00 4.94
1326 3250 0.179067 GACGACCACCTGAACCAACA 60.179 55.000 0.00 0.00 0.00 3.33
1544 3759 2.031919 AGCGCGTTCATGTCCCAA 59.968 55.556 8.43 0.00 0.00 4.12
1685 3906 4.745751 CCGTTCTGCCCGCCGTTA 62.746 66.667 0.00 0.00 0.00 3.18
1733 3969 4.648626 TCCCACTGGCACTGCTGC 62.649 66.667 0.00 0.00 43.41 5.25
1945 4181 0.319813 GCCATTGTTGTTGCAGTCCC 60.320 55.000 0.00 0.00 0.00 4.46
1949 4185 2.023223 GCCGCCATTGTTGTTGCAG 61.023 57.895 0.00 0.00 0.00 4.41
2144 4409 6.950860 AATTATTTGGGTGGATGGAAAAGT 57.049 33.333 0.00 0.00 0.00 2.66
2229 4504 5.539048 TGACCTAGCTAGTTCAACTTCAAC 58.461 41.667 17.76 0.00 0.00 3.18
2230 4505 5.801531 TGACCTAGCTAGTTCAACTTCAA 57.198 39.130 17.76 0.00 0.00 2.69
2231 4506 6.360370 AATGACCTAGCTAGTTCAACTTCA 57.640 37.500 22.91 11.52 28.42 3.02
2232 4507 7.674471 AAAATGACCTAGCTAGTTCAACTTC 57.326 36.000 22.91 6.93 28.42 3.01
2233 4508 7.606839 GGTAAAATGACCTAGCTAGTTCAACTT 59.393 37.037 22.91 19.41 36.47 2.66
2238 4513 6.049790 CCTGGTAAAATGACCTAGCTAGTTC 58.950 44.000 19.31 15.28 40.46 3.01
2324 4604 2.821378 TGAGTTCAGCCATGACATTTGG 59.179 45.455 0.00 0.00 34.35 3.28
2425 4711 1.402968 CCGAAGTGCATCCAATCCAAG 59.597 52.381 0.00 0.00 0.00 3.61
2444 4730 3.736252 CACATCTTCGGTATTGATCGACC 59.264 47.826 0.00 1.96 34.99 4.79
2706 5009 9.900710 AAAGACGATGATTATATAGTCACACTC 57.099 33.333 9.86 4.20 35.81 3.51
2736 5045 3.731867 GCGTCATTATGCAAGACCAAAGG 60.732 47.826 0.00 0.00 37.58 3.11
2740 5049 2.009051 CTGCGTCATTATGCAAGACCA 58.991 47.619 0.00 0.00 46.75 4.02
2741 5050 1.331756 CCTGCGTCATTATGCAAGACC 59.668 52.381 0.00 0.00 46.75 3.85
2810 5119 3.947834 AGAATCCAATCAAATGACGACCC 59.052 43.478 0.00 0.00 0.00 4.46
2865 5176 5.305644 ACAGTGAAGACTAATGTTGGACTCT 59.694 40.000 0.00 0.00 0.00 3.24
2900 5211 8.035165 ACAATTATTGTCGCAAAGTACATACA 57.965 30.769 4.56 0.00 40.56 2.29
2994 5320 4.082300 ACAGTGCAGACTATGTCTTCTCTG 60.082 45.833 19.53 19.53 45.43 3.35
3011 5337 3.255642 TCAAAATGGAAAGCCTACAGTGC 59.744 43.478 0.00 0.00 34.31 4.40
3018 5344 5.093677 ACCCTAATTCAAAATGGAAAGCCT 58.906 37.500 0.00 0.00 34.31 4.58
3111 5437 9.826574 ATTATGCATGCAATTGTCTTTCTTAAT 57.173 25.926 26.68 15.49 0.00 1.40
3200 5613 1.484444 GGCTGAGAAGACCCCACACT 61.484 60.000 0.00 0.00 0.00 3.55
3245 5658 3.653344 TGTGTGTGTCTGCTAGTCAATC 58.347 45.455 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.