Multiple sequence alignment - TraesCS4A01G458800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G458800 chr4A 100.000 2270 0 0 1 2270 724401260 724398991 0.000000e+00 4193.0
1 TraesCS4A01G458800 chr4A 93.030 703 44 1 1352 2054 724579719 724579022 0.000000e+00 1022.0
2 TraesCS4A01G458800 chr4A 90.415 626 26 11 717 1342 724580371 724579780 0.000000e+00 793.0
3 TraesCS4A01G458800 chr4A 82.480 976 96 29 1352 2270 724783020 724783977 0.000000e+00 785.0
4 TraesCS4A01G458800 chr4A 95.273 275 13 0 998 1272 724782633 724782907 9.630000e-119 436.0
5 TraesCS4A01G458800 chr4A 82.161 398 37 22 613 997 724782229 724782605 6.090000e-81 311.0
6 TraesCS4A01G458800 chr4A 90.265 113 7 1 2162 2270 724578971 724578859 6.530000e-31 145.0
7 TraesCS4A01G458800 chr7D 88.335 943 72 15 1352 2270 13097760 13096832 0.000000e+00 1098.0
8 TraesCS4A01G458800 chr7D 87.012 947 78 18 1352 2270 13066849 13065920 0.000000e+00 1026.0
9 TraesCS4A01G458800 chr7D 82.067 987 93 33 1352 2270 13029118 13028148 0.000000e+00 765.0
10 TraesCS4A01G458800 chr7D 87.632 663 38 23 717 1350 13098457 13097810 0.000000e+00 730.0
11 TraesCS4A01G458800 chr7D 84.921 630 46 25 678 1271 13067866 13067250 1.940000e-165 592.0
12 TraesCS4A01G458800 chr7D 95.620 274 12 0 998 1271 13029514 13029241 7.440000e-120 440.0
13 TraesCS4A01G458800 chr7D 85.354 198 7 8 613 793 13068015 13067823 3.850000e-43 185.0
14 TraesCS4A01G458800 chr7D 84.483 116 5 3 514 616 13068160 13068045 3.990000e-18 102.0
15 TraesCS4A01G458800 chr7D 93.333 45 3 0 572 616 13030019 13029975 1.460000e-07 67.6
16 TraesCS4A01G458800 chr7A 88.047 937 76 6 1352 2270 12652337 12651419 0.000000e+00 1077.0
17 TraesCS4A01G458800 chr7A 86.015 951 83 22 1352 2270 12454942 12454010 0.000000e+00 974.0
18 TraesCS4A01G458800 chr7A 82.503 983 95 29 1352 2270 12429253 12428284 0.000000e+00 791.0
19 TraesCS4A01G458800 chr7A 86.364 660 43 23 717 1350 12653025 12652387 0.000000e+00 676.0
20 TraesCS4A01G458800 chr7A 95.307 277 13 0 996 1272 12429651 12429375 7.440000e-120 440.0
21 TraesCS4A01G458800 chr7A 92.857 280 20 0 996 1275 12455348 12455069 7.550000e-110 407.0
22 TraesCS4A01G458800 chr7A 88.889 297 12 11 650 940 12455705 12455424 1.670000e-91 346.0
23 TraesCS4A01G458800 chr7A 83.929 112 5 2 518 616 12430214 12430103 6.680000e-16 95.3
24 TraesCS4A01G458800 chr7A 97.500 40 1 0 577 616 12457565 12457526 4.050000e-08 69.4
25 TraesCS4A01G458800 chr7A 97.059 34 1 0 330 363 5854914 5854881 8.760000e-05 58.4
26 TraesCS4A01G458800 chr4D 82.712 966 107 30 1352 2270 506606714 506605762 0.000000e+00 804.0
27 TraesCS4A01G458800 chr4D 94.182 275 16 0 997 1271 506607111 506606837 9.700000e-114 420.0
28 TraesCS4A01G458800 chr4D 82.274 299 25 16 717 993 506607452 506607160 1.360000e-57 233.0
29 TraesCS4A01G458800 chr1A 94.345 336 17 2 1 336 541433597 541433264 4.320000e-142 514.0
30 TraesCS4A01G458800 chr2A 91.667 48 4 0 329 376 15364230 15364183 1.460000e-07 67.6
31 TraesCS4A01G458800 chr2D 97.059 34 1 0 330 363 89613208 89613175 8.760000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G458800 chr4A 724398991 724401260 2269 True 4193.000000 4193 100.000000 1 2270 1 chr4A.!!$R1 2269
1 TraesCS4A01G458800 chr4A 724578859 724580371 1512 True 653.333333 1022 91.236667 717 2270 3 chr4A.!!$R2 1553
2 TraesCS4A01G458800 chr4A 724782229 724783977 1748 False 510.666667 785 86.638000 613 2270 3 chr4A.!!$F1 1657
3 TraesCS4A01G458800 chr7D 13096832 13098457 1625 True 914.000000 1098 87.983500 717 2270 2 chr7D.!!$R3 1553
4 TraesCS4A01G458800 chr7D 13065920 13068160 2240 True 476.250000 1026 85.442500 514 2270 4 chr7D.!!$R2 1756
5 TraesCS4A01G458800 chr7D 13028148 13030019 1871 True 424.200000 765 90.340000 572 2270 3 chr7D.!!$R1 1698
6 TraesCS4A01G458800 chr7A 12651419 12653025 1606 True 876.500000 1077 87.205500 717 2270 2 chr7A.!!$R4 1553
7 TraesCS4A01G458800 chr7A 12454010 12457565 3555 True 449.100000 974 91.315250 577 2270 4 chr7A.!!$R3 1693
8 TraesCS4A01G458800 chr7A 12428284 12430214 1930 True 442.100000 791 87.246333 518 2270 3 chr7A.!!$R2 1752
9 TraesCS4A01G458800 chr4D 506605762 506607452 1690 True 485.666667 804 86.389333 717 2270 3 chr4D.!!$R1 1553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.106268 TGAGAAAGCCCAGCCAAACA 60.106 50.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 4077 0.108585 ATGTCGTTCCACTGGCACTT 59.891 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.141409 TGGGAGGAAAGGGTTTTGC 57.859 52.632 0.00 0.00 35.12 3.68
19 20 0.471022 TGGGAGGAAAGGGTTTTGCC 60.471 55.000 0.00 0.00 35.44 4.52
20 21 0.178932 GGGAGGAAAGGGTTTTGCCT 60.179 55.000 0.00 0.00 35.44 4.75
21 22 1.717032 GGAGGAAAGGGTTTTGCCTT 58.283 50.000 0.00 0.00 35.44 4.35
22 23 1.344438 GGAGGAAAGGGTTTTGCCTTG 59.656 52.381 0.00 0.00 35.44 3.61
23 24 1.344438 GAGGAAAGGGTTTTGCCTTGG 59.656 52.381 0.00 0.00 35.44 3.61
24 25 0.396435 GGAAAGGGTTTTGCCTTGGG 59.604 55.000 0.00 0.00 37.43 4.12
25 26 0.396435 GAAAGGGTTTTGCCTTGGGG 59.604 55.000 0.00 0.00 37.43 4.96
26 27 0.327095 AAAGGGTTTTGCCTTGGGGT 60.327 50.000 0.00 0.00 37.43 4.95
27 28 0.327095 AAGGGTTTTGCCTTGGGGTT 60.327 50.000 0.00 0.00 37.43 4.11
28 29 0.762842 AGGGTTTTGCCTTGGGGTTC 60.763 55.000 0.00 0.00 37.43 3.62
29 30 0.762842 GGGTTTTGCCTTGGGGTTCT 60.763 55.000 0.00 0.00 37.43 3.01
30 31 1.481615 GGGTTTTGCCTTGGGGTTCTA 60.482 52.381 0.00 0.00 37.43 2.10
31 32 1.893137 GGTTTTGCCTTGGGGTTCTAG 59.107 52.381 0.00 0.00 34.45 2.43
32 33 2.594131 GTTTTGCCTTGGGGTTCTAGT 58.406 47.619 0.00 0.00 34.45 2.57
33 34 2.557056 GTTTTGCCTTGGGGTTCTAGTC 59.443 50.000 0.00 0.00 34.45 2.59
34 35 1.440618 TTGCCTTGGGGTTCTAGTCA 58.559 50.000 0.00 0.00 34.45 3.41
35 36 1.440618 TGCCTTGGGGTTCTAGTCAA 58.559 50.000 0.00 0.00 34.45 3.18
36 37 1.777878 TGCCTTGGGGTTCTAGTCAAA 59.222 47.619 0.00 0.00 34.45 2.69
37 38 2.378547 TGCCTTGGGGTTCTAGTCAAAT 59.621 45.455 0.00 0.00 34.45 2.32
38 39 3.589735 TGCCTTGGGGTTCTAGTCAAATA 59.410 43.478 0.00 0.00 34.45 1.40
39 40 4.043561 TGCCTTGGGGTTCTAGTCAAATAA 59.956 41.667 0.00 0.00 34.45 1.40
40 41 5.014202 GCCTTGGGGTTCTAGTCAAATAAA 58.986 41.667 0.00 0.00 34.45 1.40
41 42 5.125578 GCCTTGGGGTTCTAGTCAAATAAAG 59.874 44.000 0.00 0.00 34.45 1.85
42 43 6.246163 CCTTGGGGTTCTAGTCAAATAAAGT 58.754 40.000 0.00 0.00 0.00 2.66
43 44 7.399634 CCTTGGGGTTCTAGTCAAATAAAGTA 58.600 38.462 0.00 0.00 0.00 2.24
44 45 7.553044 CCTTGGGGTTCTAGTCAAATAAAGTAG 59.447 40.741 0.00 0.00 0.00 2.57
45 46 7.801893 TGGGGTTCTAGTCAAATAAAGTAGA 57.198 36.000 0.00 0.00 0.00 2.59
46 47 7.618137 TGGGGTTCTAGTCAAATAAAGTAGAC 58.382 38.462 0.00 0.00 30.29 2.59
47 48 7.236019 TGGGGTTCTAGTCAAATAAAGTAGACA 59.764 37.037 0.00 0.00 33.56 3.41
48 49 8.265764 GGGGTTCTAGTCAAATAAAGTAGACAT 58.734 37.037 0.00 0.00 33.56 3.06
73 74 6.830873 AAAAAGAAGCAGAGAAGCATACAT 57.169 33.333 0.00 0.00 36.85 2.29
74 75 6.830873 AAAAGAAGCAGAGAAGCATACATT 57.169 33.333 0.00 0.00 36.85 2.71
75 76 6.830873 AAAGAAGCAGAGAAGCATACATTT 57.169 33.333 0.00 0.00 36.85 2.32
76 77 6.830873 AAGAAGCAGAGAAGCATACATTTT 57.169 33.333 0.00 0.00 36.85 1.82
77 78 6.434018 AGAAGCAGAGAAGCATACATTTTC 57.566 37.500 0.00 0.00 36.85 2.29
78 79 6.179040 AGAAGCAGAGAAGCATACATTTTCT 58.821 36.000 0.00 0.00 36.85 2.52
79 80 6.658391 AGAAGCAGAGAAGCATACATTTTCTT 59.342 34.615 0.00 0.00 36.85 2.52
80 81 6.192234 AGCAGAGAAGCATACATTTTCTTG 57.808 37.500 0.00 0.00 36.85 3.02
81 82 5.709164 AGCAGAGAAGCATACATTTTCTTGT 59.291 36.000 0.00 0.00 36.85 3.16
82 83 6.026513 GCAGAGAAGCATACATTTTCTTGTC 58.973 40.000 0.00 0.00 31.67 3.18
83 84 6.128063 GCAGAGAAGCATACATTTTCTTGTCT 60.128 38.462 0.00 0.00 38.98 3.41
84 85 7.462731 CAGAGAAGCATACATTTTCTTGTCTC 58.537 38.462 0.00 0.00 37.16 3.36
85 86 7.333921 CAGAGAAGCATACATTTTCTTGTCTCT 59.666 37.037 0.00 0.00 37.16 3.10
86 87 8.535335 AGAGAAGCATACATTTTCTTGTCTCTA 58.465 33.333 0.00 0.00 35.20 2.43
87 88 9.155975 GAGAAGCATACATTTTCTTGTCTCTAA 57.844 33.333 0.00 0.00 31.67 2.10
88 89 8.940952 AGAAGCATACATTTTCTTGTCTCTAAC 58.059 33.333 0.00 0.00 0.00 2.34
89 90 8.854614 AAGCATACATTTTCTTGTCTCTAACT 57.145 30.769 0.00 0.00 0.00 2.24
90 91 8.261492 AGCATACATTTTCTTGTCTCTAACTG 57.739 34.615 0.00 0.00 0.00 3.16
91 92 6.963805 GCATACATTTTCTTGTCTCTAACTGC 59.036 38.462 0.00 0.00 0.00 4.40
92 93 7.148340 GCATACATTTTCTTGTCTCTAACTGCT 60.148 37.037 0.00 0.00 0.00 4.24
93 94 9.371136 CATACATTTTCTTGTCTCTAACTGCTA 57.629 33.333 0.00 0.00 0.00 3.49
94 95 7.897575 ACATTTTCTTGTCTCTAACTGCTAG 57.102 36.000 0.00 0.00 0.00 3.42
95 96 6.876257 ACATTTTCTTGTCTCTAACTGCTAGG 59.124 38.462 0.00 0.00 0.00 3.02
96 97 4.457834 TTCTTGTCTCTAACTGCTAGGC 57.542 45.455 0.00 0.00 0.00 3.93
97 98 3.702792 TCTTGTCTCTAACTGCTAGGCT 58.297 45.455 0.00 0.00 0.00 4.58
98 99 4.090090 TCTTGTCTCTAACTGCTAGGCTT 58.910 43.478 0.00 0.00 0.00 4.35
99 100 4.528596 TCTTGTCTCTAACTGCTAGGCTTT 59.471 41.667 0.00 0.00 0.00 3.51
100 101 4.891992 TGTCTCTAACTGCTAGGCTTTT 57.108 40.909 0.00 0.00 0.00 2.27
101 102 5.228945 TGTCTCTAACTGCTAGGCTTTTT 57.771 39.130 0.00 0.00 0.00 1.94
138 139 8.830201 TTTGTTCAATAGCTTTTTGCATATGT 57.170 26.923 4.29 0.00 45.94 2.29
139 140 7.815398 TGTTCAATAGCTTTTTGCATATGTG 57.185 32.000 4.29 0.00 45.94 3.21
140 141 7.377398 TGTTCAATAGCTTTTTGCATATGTGT 58.623 30.769 4.29 0.00 45.94 3.72
141 142 7.871973 TGTTCAATAGCTTTTTGCATATGTGTT 59.128 29.630 4.29 0.00 45.94 3.32
142 143 7.815398 TCAATAGCTTTTTGCATATGTGTTG 57.185 32.000 4.29 0.00 45.94 3.33
143 144 6.812656 TCAATAGCTTTTTGCATATGTGTTGG 59.187 34.615 4.29 0.00 45.94 3.77
144 145 4.605640 AGCTTTTTGCATATGTGTTGGT 57.394 36.364 4.29 0.00 45.94 3.67
145 146 5.720371 AGCTTTTTGCATATGTGTTGGTA 57.280 34.783 4.29 0.00 45.94 3.25
146 147 6.095432 AGCTTTTTGCATATGTGTTGGTAA 57.905 33.333 4.29 0.00 45.94 2.85
147 148 6.520272 AGCTTTTTGCATATGTGTTGGTAAA 58.480 32.000 4.29 0.00 45.94 2.01
148 149 7.160726 AGCTTTTTGCATATGTGTTGGTAAAT 58.839 30.769 4.29 0.00 45.94 1.40
149 150 8.310382 AGCTTTTTGCATATGTGTTGGTAAATA 58.690 29.630 4.29 0.00 45.94 1.40
150 151 9.097257 GCTTTTTGCATATGTGTTGGTAAATAT 57.903 29.630 4.29 0.00 42.31 1.28
163 164 9.908152 GTGTTGGTAAATATATTTTCATAGGCC 57.092 33.333 15.64 0.00 0.00 5.19
164 165 9.647918 TGTTGGTAAATATATTTTCATAGGCCA 57.352 29.630 15.64 9.92 0.00 5.36
166 167 8.348285 TGGTAAATATATTTTCATAGGCCAGC 57.652 34.615 15.64 5.30 0.00 4.85
167 168 7.947332 TGGTAAATATATTTTCATAGGCCAGCA 59.053 33.333 15.64 7.60 0.00 4.41
168 169 8.244113 GGTAAATATATTTTCATAGGCCAGCAC 58.756 37.037 15.64 3.71 0.00 4.40
169 170 6.840780 AATATATTTTCATAGGCCAGCACC 57.159 37.500 5.01 0.00 0.00 5.01
170 171 2.530460 ATTTTCATAGGCCAGCACCA 57.470 45.000 5.01 0.00 0.00 4.17
171 172 1.838112 TTTTCATAGGCCAGCACCAG 58.162 50.000 5.01 0.00 0.00 4.00
172 173 0.680921 TTTCATAGGCCAGCACCAGC 60.681 55.000 5.01 0.00 42.56 4.85
183 184 4.394712 CACCAGCCCGACCCAGTC 62.395 72.222 0.00 0.00 0.00 3.51
184 185 4.954118 ACCAGCCCGACCCAGTCA 62.954 66.667 0.00 0.00 32.09 3.41
185 186 4.087892 CCAGCCCGACCCAGTCAG 62.088 72.222 0.00 0.00 32.09 3.51
186 187 2.997315 CAGCCCGACCCAGTCAGA 60.997 66.667 0.00 0.00 32.09 3.27
187 188 2.203788 AGCCCGACCCAGTCAGAA 60.204 61.111 0.00 0.00 32.09 3.02
188 189 2.047179 GCCCGACCCAGTCAGAAC 60.047 66.667 0.00 0.00 32.09 3.01
189 190 2.879233 GCCCGACCCAGTCAGAACA 61.879 63.158 0.00 0.00 32.09 3.18
190 191 1.752198 CCCGACCCAGTCAGAACAA 59.248 57.895 0.00 0.00 32.09 2.83
191 192 0.107831 CCCGACCCAGTCAGAACAAA 59.892 55.000 0.00 0.00 32.09 2.83
192 193 1.226746 CCGACCCAGTCAGAACAAAC 58.773 55.000 0.00 0.00 32.09 2.93
193 194 1.474320 CCGACCCAGTCAGAACAAACA 60.474 52.381 0.00 0.00 32.09 2.83
194 195 2.285083 CGACCCAGTCAGAACAAACAA 58.715 47.619 0.00 0.00 32.09 2.83
195 196 2.680841 CGACCCAGTCAGAACAAACAAA 59.319 45.455 0.00 0.00 32.09 2.83
196 197 3.315191 CGACCCAGTCAGAACAAACAAAT 59.685 43.478 0.00 0.00 32.09 2.32
197 198 4.202010 CGACCCAGTCAGAACAAACAAATT 60.202 41.667 0.00 0.00 32.09 1.82
198 199 5.009854 ACCCAGTCAGAACAAACAAATTG 57.990 39.130 0.00 0.00 44.95 2.32
199 200 4.709397 ACCCAGTCAGAACAAACAAATTGA 59.291 37.500 0.00 0.00 41.85 2.57
200 201 5.163519 ACCCAGTCAGAACAAACAAATTGAG 60.164 40.000 0.00 0.00 41.85 3.02
201 202 5.067674 CCCAGTCAGAACAAACAAATTGAGA 59.932 40.000 0.00 0.00 41.85 3.27
202 203 6.405731 CCCAGTCAGAACAAACAAATTGAGAA 60.406 38.462 0.00 0.00 41.85 2.87
203 204 7.035004 CCAGTCAGAACAAACAAATTGAGAAA 58.965 34.615 0.00 0.00 41.85 2.52
204 205 7.221452 CCAGTCAGAACAAACAAATTGAGAAAG 59.779 37.037 0.00 0.00 41.85 2.62
205 206 6.753744 AGTCAGAACAAACAAATTGAGAAAGC 59.246 34.615 0.00 0.00 41.85 3.51
206 207 6.019559 GTCAGAACAAACAAATTGAGAAAGCC 60.020 38.462 0.00 0.00 41.85 4.35
207 208 5.234972 CAGAACAAACAAATTGAGAAAGCCC 59.765 40.000 0.00 0.00 41.85 5.19
208 209 4.751767 ACAAACAAATTGAGAAAGCCCA 57.248 36.364 0.00 0.00 41.85 5.36
209 210 4.696455 ACAAACAAATTGAGAAAGCCCAG 58.304 39.130 0.00 0.00 41.85 4.45
210 211 3.391506 AACAAATTGAGAAAGCCCAGC 57.608 42.857 0.00 0.00 0.00 4.85
211 212 1.620323 ACAAATTGAGAAAGCCCAGCC 59.380 47.619 0.00 0.00 0.00 4.85
212 213 1.619827 CAAATTGAGAAAGCCCAGCCA 59.380 47.619 0.00 0.00 0.00 4.75
213 214 2.014010 AATTGAGAAAGCCCAGCCAA 57.986 45.000 0.00 0.00 0.00 4.52
214 215 2.014010 ATTGAGAAAGCCCAGCCAAA 57.986 45.000 0.00 0.00 0.00 3.28
215 216 1.039856 TTGAGAAAGCCCAGCCAAAC 58.960 50.000 0.00 0.00 0.00 2.93
216 217 0.106268 TGAGAAAGCCCAGCCAAACA 60.106 50.000 0.00 0.00 0.00 2.83
217 218 1.260544 GAGAAAGCCCAGCCAAACAT 58.739 50.000 0.00 0.00 0.00 2.71
218 219 2.224992 TGAGAAAGCCCAGCCAAACATA 60.225 45.455 0.00 0.00 0.00 2.29
219 220 2.825532 GAGAAAGCCCAGCCAAACATAA 59.174 45.455 0.00 0.00 0.00 1.90
220 221 2.562738 AGAAAGCCCAGCCAAACATAAC 59.437 45.455 0.00 0.00 0.00 1.89
221 222 2.008242 AAGCCCAGCCAAACATAACA 57.992 45.000 0.00 0.00 0.00 2.41
222 223 2.008242 AGCCCAGCCAAACATAACAA 57.992 45.000 0.00 0.00 0.00 2.83
223 224 2.324541 AGCCCAGCCAAACATAACAAA 58.675 42.857 0.00 0.00 0.00 2.83
224 225 2.037121 AGCCCAGCCAAACATAACAAAC 59.963 45.455 0.00 0.00 0.00 2.93
225 226 2.224161 GCCCAGCCAAACATAACAAACA 60.224 45.455 0.00 0.00 0.00 2.83
226 227 3.742640 GCCCAGCCAAACATAACAAACAA 60.743 43.478 0.00 0.00 0.00 2.83
227 228 4.057432 CCCAGCCAAACATAACAAACAAG 58.943 43.478 0.00 0.00 0.00 3.16
228 229 3.494251 CCAGCCAAACATAACAAACAAGC 59.506 43.478 0.00 0.00 0.00 4.01
229 230 4.118410 CAGCCAAACATAACAAACAAGCA 58.882 39.130 0.00 0.00 0.00 3.91
230 231 4.569966 CAGCCAAACATAACAAACAAGCAA 59.430 37.500 0.00 0.00 0.00 3.91
231 232 5.064452 CAGCCAAACATAACAAACAAGCAAA 59.936 36.000 0.00 0.00 0.00 3.68
232 233 5.064579 AGCCAAACATAACAAACAAGCAAAC 59.935 36.000 0.00 0.00 0.00 2.93
233 234 5.163814 GCCAAACATAACAAACAAGCAAACA 60.164 36.000 0.00 0.00 0.00 2.83
234 235 6.476896 CCAAACATAACAAACAAGCAAACAG 58.523 36.000 0.00 0.00 0.00 3.16
235 236 6.456718 CCAAACATAACAAACAAGCAAACAGG 60.457 38.462 0.00 0.00 0.00 4.00
236 237 5.590530 ACATAACAAACAAGCAAACAGGA 57.409 34.783 0.00 0.00 0.00 3.86
237 238 5.971763 ACATAACAAACAAGCAAACAGGAA 58.028 33.333 0.00 0.00 0.00 3.36
238 239 6.402222 ACATAACAAACAAGCAAACAGGAAA 58.598 32.000 0.00 0.00 0.00 3.13
239 240 6.876257 ACATAACAAACAAGCAAACAGGAAAA 59.124 30.769 0.00 0.00 0.00 2.29
240 241 7.552330 ACATAACAAACAAGCAAACAGGAAAAT 59.448 29.630 0.00 0.00 0.00 1.82
241 242 9.039870 CATAACAAACAAGCAAACAGGAAAATA 57.960 29.630 0.00 0.00 0.00 1.40
242 243 7.913674 AACAAACAAGCAAACAGGAAAATAA 57.086 28.000 0.00 0.00 0.00 1.40
243 244 7.913674 ACAAACAAGCAAACAGGAAAATAAA 57.086 28.000 0.00 0.00 0.00 1.40
244 245 8.329203 ACAAACAAGCAAACAGGAAAATAAAA 57.671 26.923 0.00 0.00 0.00 1.52
245 246 8.787852 ACAAACAAGCAAACAGGAAAATAAAAA 58.212 25.926 0.00 0.00 0.00 1.94
262 263 3.147826 AAAAAGGCCCAGAACCCAG 57.852 52.632 0.00 0.00 0.00 4.45
263 264 0.471780 AAAAAGGCCCAGAACCCAGG 60.472 55.000 0.00 0.00 0.00 4.45
264 265 1.664956 AAAAGGCCCAGAACCCAGGT 61.665 55.000 0.00 0.00 0.00 4.00
265 266 2.081585 AAAGGCCCAGAACCCAGGTC 62.082 60.000 0.00 0.00 0.00 3.85
266 267 4.410400 GGCCCAGAACCCAGGTCG 62.410 72.222 0.00 0.00 0.00 4.79
267 268 4.410400 GCCCAGAACCCAGGTCGG 62.410 72.222 0.00 0.00 0.00 4.79
268 269 2.606519 CCCAGAACCCAGGTCGGA 60.607 66.667 0.00 0.00 36.56 4.55
269 270 1.995626 CCCAGAACCCAGGTCGGAT 60.996 63.158 0.00 0.00 36.56 4.18
270 271 0.689745 CCCAGAACCCAGGTCGGATA 60.690 60.000 0.00 0.00 36.56 2.59
271 272 0.464452 CCAGAACCCAGGTCGGATAC 59.536 60.000 0.00 0.00 36.56 2.24
272 273 1.191535 CAGAACCCAGGTCGGATACA 58.808 55.000 0.00 0.00 36.56 2.29
273 274 1.553248 CAGAACCCAGGTCGGATACAA 59.447 52.381 0.00 0.00 36.56 2.41
274 275 2.170607 CAGAACCCAGGTCGGATACAAT 59.829 50.000 0.00 0.00 36.56 2.71
275 276 2.434702 AGAACCCAGGTCGGATACAATC 59.565 50.000 0.00 0.00 36.56 2.67
276 277 1.129058 ACCCAGGTCGGATACAATCC 58.871 55.000 0.00 0.00 46.22 3.01
288 289 3.850752 GATACAATCCAGGAGAGGGAGA 58.149 50.000 0.00 0.00 37.96 3.71
289 290 2.173126 ACAATCCAGGAGAGGGAGAG 57.827 55.000 0.00 0.00 37.96 3.20
290 291 0.758123 CAATCCAGGAGAGGGAGAGC 59.242 60.000 0.00 0.00 37.96 4.09
291 292 0.641601 AATCCAGGAGAGGGAGAGCT 59.358 55.000 0.00 0.00 37.96 4.09
292 293 1.540115 ATCCAGGAGAGGGAGAGCTA 58.460 55.000 0.00 0.00 37.96 3.32
293 294 0.850100 TCCAGGAGAGGGAGAGCTAG 59.150 60.000 0.00 0.00 0.00 3.42
294 295 0.555769 CCAGGAGAGGGAGAGCTAGT 59.444 60.000 0.00 0.00 0.00 2.57
295 296 1.063266 CCAGGAGAGGGAGAGCTAGTT 60.063 57.143 0.00 0.00 0.00 2.24
296 297 2.175931 CCAGGAGAGGGAGAGCTAGTTA 59.824 54.545 0.00 0.00 0.00 2.24
297 298 3.373220 CCAGGAGAGGGAGAGCTAGTTAA 60.373 52.174 0.00 0.00 0.00 2.01
298 299 3.634910 CAGGAGAGGGAGAGCTAGTTAAC 59.365 52.174 0.00 0.00 0.00 2.01
299 300 3.269906 AGGAGAGGGAGAGCTAGTTAACA 59.730 47.826 8.61 0.00 0.00 2.41
300 301 3.634910 GGAGAGGGAGAGCTAGTTAACAG 59.365 52.174 8.61 4.68 0.00 3.16
301 302 3.634910 GAGAGGGAGAGCTAGTTAACAGG 59.365 52.174 8.61 0.97 0.00 4.00
302 303 2.101750 GAGGGAGAGCTAGTTAACAGGC 59.898 54.545 8.61 11.11 0.00 4.85
303 304 1.139256 GGGAGAGCTAGTTAACAGGCC 59.861 57.143 8.61 0.00 0.00 5.19
304 305 2.112190 GGAGAGCTAGTTAACAGGCCT 58.888 52.381 0.00 0.00 0.00 5.19
305 306 3.297736 GGAGAGCTAGTTAACAGGCCTA 58.702 50.000 3.98 0.00 0.00 3.93
306 307 3.705072 GGAGAGCTAGTTAACAGGCCTAA 59.295 47.826 3.98 0.00 0.00 2.69
307 308 4.345547 GGAGAGCTAGTTAACAGGCCTAAT 59.654 45.833 3.98 0.00 0.00 1.73
308 309 5.163290 GGAGAGCTAGTTAACAGGCCTAATT 60.163 44.000 3.98 5.70 0.00 1.40
309 310 6.314899 AGAGCTAGTTAACAGGCCTAATTT 57.685 37.500 3.98 1.16 0.00 1.82
310 311 7.418712 GGAGAGCTAGTTAACAGGCCTAATTTA 60.419 40.741 3.98 0.02 0.00 1.40
311 312 7.273712 AGAGCTAGTTAACAGGCCTAATTTAC 58.726 38.462 3.98 7.47 0.00 2.01
312 313 6.954232 AGCTAGTTAACAGGCCTAATTTACA 58.046 36.000 3.98 0.00 0.00 2.41
313 314 7.574607 AGCTAGTTAACAGGCCTAATTTACAT 58.425 34.615 3.98 0.91 0.00 2.29
314 315 8.711170 AGCTAGTTAACAGGCCTAATTTACATA 58.289 33.333 3.98 1.96 0.00 2.29
315 316 8.989980 GCTAGTTAACAGGCCTAATTTACATAG 58.010 37.037 3.98 11.09 0.00 2.23
316 317 9.490379 CTAGTTAACAGGCCTAATTTACATAGG 57.510 37.037 3.98 0.00 42.41 2.57
317 318 8.097791 AGTTAACAGGCCTAATTTACATAGGA 57.902 34.615 3.98 0.00 42.16 2.94
318 319 8.724310 AGTTAACAGGCCTAATTTACATAGGAT 58.276 33.333 3.98 0.00 42.16 3.24
319 320 8.784043 GTTAACAGGCCTAATTTACATAGGATG 58.216 37.037 3.98 4.28 42.16 3.51
320 321 6.763715 ACAGGCCTAATTTACATAGGATGA 57.236 37.500 3.98 0.00 42.16 2.92
321 322 7.335127 ACAGGCCTAATTTACATAGGATGAT 57.665 36.000 3.98 0.00 42.16 2.45
322 323 7.170965 ACAGGCCTAATTTACATAGGATGATG 58.829 38.462 3.98 0.00 42.16 3.07
323 324 7.170965 CAGGCCTAATTTACATAGGATGATGT 58.829 38.462 3.98 0.00 42.16 3.06
324 325 7.335422 CAGGCCTAATTTACATAGGATGATGTC 59.665 40.741 3.98 0.00 42.16 3.06
325 326 7.017551 AGGCCTAATTTACATAGGATGATGTCA 59.982 37.037 1.29 0.00 42.16 3.58
326 327 7.335422 GGCCTAATTTACATAGGATGATGTCAG 59.665 40.741 0.00 0.00 42.16 3.51
327 328 7.148340 GCCTAATTTACATAGGATGATGTCAGC 60.148 40.741 3.83 0.00 42.16 4.26
328 329 8.099537 CCTAATTTACATAGGATGATGTCAGCT 58.900 37.037 0.00 0.00 42.16 4.24
329 330 7.741027 AATTTACATAGGATGATGTCAGCTG 57.259 36.000 7.63 7.63 40.54 4.24
330 331 6.484364 TTTACATAGGATGATGTCAGCTGA 57.516 37.500 13.74 13.74 40.54 4.26
331 332 4.333913 ACATAGGATGATGTCAGCTGAC 57.666 45.455 35.04 35.04 44.97 3.51
332 333 3.966006 ACATAGGATGATGTCAGCTGACT 59.034 43.478 38.81 27.27 44.99 3.41
333 334 5.143369 ACATAGGATGATGTCAGCTGACTA 58.857 41.667 38.81 27.86 44.99 2.59
334 335 5.600069 ACATAGGATGATGTCAGCTGACTAA 59.400 40.000 38.81 26.94 44.99 2.24
335 336 4.669206 AGGATGATGTCAGCTGACTAAG 57.331 45.455 38.81 4.16 44.99 2.18
336 337 4.285020 AGGATGATGTCAGCTGACTAAGA 58.715 43.478 38.81 24.27 44.99 2.10
337 338 4.099266 AGGATGATGTCAGCTGACTAAGAC 59.901 45.833 38.81 27.37 44.99 3.01
338 339 4.099266 GGATGATGTCAGCTGACTAAGACT 59.901 45.833 38.81 22.44 44.99 3.24
339 340 5.395103 GGATGATGTCAGCTGACTAAGACTT 60.395 44.000 38.81 23.98 44.99 3.01
340 341 5.065704 TGATGTCAGCTGACTAAGACTTC 57.934 43.478 38.81 24.63 44.99 3.01
341 342 3.560902 TGTCAGCTGACTAAGACTTCG 57.439 47.619 38.81 0.23 44.99 3.79
342 343 2.255316 GTCAGCTGACTAAGACTTCGC 58.745 52.381 34.54 8.12 41.65 4.70
343 344 1.135660 TCAGCTGACTAAGACTTCGCG 60.136 52.381 13.74 0.00 0.00 5.87
344 345 1.135660 CAGCTGACTAAGACTTCGCGA 60.136 52.381 8.42 3.71 0.00 5.87
345 346 1.540267 AGCTGACTAAGACTTCGCGAA 59.460 47.619 22.01 22.01 0.00 4.70
346 347 1.914700 GCTGACTAAGACTTCGCGAAG 59.085 52.381 39.55 39.55 43.79 3.79
356 357 2.051879 CTTCGCGAAGTCTCAGTTGA 57.948 50.000 34.97 4.60 33.87 3.18
357 358 1.716581 CTTCGCGAAGTCTCAGTTGAC 59.283 52.381 34.97 0.00 37.23 3.18
359 360 1.056103 CGCGAAGTCTCAGTTGACTG 58.944 55.000 0.00 4.77 45.49 3.51
360 361 6.837591 CTTCGCGAAGTCTCAGTTGACTGA 62.838 50.000 34.97 12.83 45.49 3.41
371 372 3.816091 CAGTTGACTGAGACGTAGACTG 58.184 50.000 5.19 0.00 46.59 3.51
372 373 3.498777 CAGTTGACTGAGACGTAGACTGA 59.501 47.826 5.19 0.00 46.59 3.41
373 374 3.499157 AGTTGACTGAGACGTAGACTGAC 59.501 47.826 0.00 0.00 29.49 3.51
374 375 2.424557 TGACTGAGACGTAGACTGACC 58.575 52.381 0.00 0.00 29.49 4.02
375 376 1.738908 GACTGAGACGTAGACTGACCC 59.261 57.143 0.00 0.00 29.49 4.46
376 377 1.073444 ACTGAGACGTAGACTGACCCA 59.927 52.381 0.00 0.00 29.49 4.51
377 378 2.160205 CTGAGACGTAGACTGACCCAA 58.840 52.381 0.00 0.00 29.49 4.12
378 379 2.557056 CTGAGACGTAGACTGACCCAAA 59.443 50.000 0.00 0.00 29.49 3.28
379 380 2.295349 TGAGACGTAGACTGACCCAAAC 59.705 50.000 0.00 0.00 29.49 2.93
380 381 2.295349 GAGACGTAGACTGACCCAAACA 59.705 50.000 0.00 0.00 29.49 2.83
381 382 2.035576 AGACGTAGACTGACCCAAACAC 59.964 50.000 0.00 0.00 0.00 3.32
382 383 1.758280 ACGTAGACTGACCCAAACACA 59.242 47.619 0.00 0.00 0.00 3.72
383 384 2.168936 ACGTAGACTGACCCAAACACAA 59.831 45.455 0.00 0.00 0.00 3.33
384 385 3.199677 CGTAGACTGACCCAAACACAAA 58.800 45.455 0.00 0.00 0.00 2.83
385 386 3.623960 CGTAGACTGACCCAAACACAAAA 59.376 43.478 0.00 0.00 0.00 2.44
386 387 4.274950 CGTAGACTGACCCAAACACAAAAT 59.725 41.667 0.00 0.00 0.00 1.82
387 388 5.467399 CGTAGACTGACCCAAACACAAAATA 59.533 40.000 0.00 0.00 0.00 1.40
388 389 6.148811 CGTAGACTGACCCAAACACAAAATAT 59.851 38.462 0.00 0.00 0.00 1.28
389 390 6.575162 AGACTGACCCAAACACAAAATATC 57.425 37.500 0.00 0.00 0.00 1.63
390 391 6.068010 AGACTGACCCAAACACAAAATATCA 58.932 36.000 0.00 0.00 0.00 2.15
391 392 6.207417 AGACTGACCCAAACACAAAATATCAG 59.793 38.462 0.00 0.00 37.62 2.90
392 393 6.068010 ACTGACCCAAACACAAAATATCAGA 58.932 36.000 4.54 0.00 35.95 3.27
393 394 6.016276 ACTGACCCAAACACAAAATATCAGAC 60.016 38.462 4.54 0.00 35.95 3.51
394 395 5.830457 TGACCCAAACACAAAATATCAGACA 59.170 36.000 0.00 0.00 0.00 3.41
395 396 6.084326 ACCCAAACACAAAATATCAGACAC 57.916 37.500 0.00 0.00 0.00 3.67
396 397 5.596361 ACCCAAACACAAAATATCAGACACA 59.404 36.000 0.00 0.00 0.00 3.72
397 398 6.151691 CCCAAACACAAAATATCAGACACAG 58.848 40.000 0.00 0.00 0.00 3.66
398 399 6.151691 CCAAACACAAAATATCAGACACAGG 58.848 40.000 0.00 0.00 0.00 4.00
399 400 5.964958 AACACAAAATATCAGACACAGGG 57.035 39.130 0.00 0.00 0.00 4.45
400 401 4.985538 ACACAAAATATCAGACACAGGGT 58.014 39.130 0.00 0.00 0.00 4.34
423 424 1.902938 TTTTGATCGGACACATGGCA 58.097 45.000 0.00 0.00 0.00 4.92
424 425 1.902938 TTTGATCGGACACATGGCAA 58.097 45.000 0.00 0.00 0.00 4.52
425 426 1.902938 TTGATCGGACACATGGCAAA 58.097 45.000 0.00 0.00 0.00 3.68
426 427 1.902938 TGATCGGACACATGGCAAAA 58.097 45.000 0.00 0.00 0.00 2.44
427 428 2.234143 TGATCGGACACATGGCAAAAA 58.766 42.857 0.00 0.00 0.00 1.94
428 429 2.030363 TGATCGGACACATGGCAAAAAC 60.030 45.455 0.00 0.00 0.00 2.43
429 430 0.671251 TCGGACACATGGCAAAAACC 59.329 50.000 0.00 0.00 0.00 3.27
430 431 0.319469 CGGACACATGGCAAAAACCC 60.319 55.000 0.00 0.00 0.00 4.11
431 432 0.755686 GGACACATGGCAAAAACCCA 59.244 50.000 0.00 0.00 36.66 4.51
432 433 1.139853 GGACACATGGCAAAAACCCAA 59.860 47.619 0.00 0.00 35.67 4.12
433 434 2.420687 GGACACATGGCAAAAACCCAAA 60.421 45.455 0.00 0.00 35.67 3.28
434 435 3.274288 GACACATGGCAAAAACCCAAAA 58.726 40.909 0.00 0.00 35.67 2.44
435 436 3.882288 GACACATGGCAAAAACCCAAAAT 59.118 39.130 0.00 0.00 35.67 1.82
436 437 5.041191 ACACATGGCAAAAACCCAAAATA 57.959 34.783 0.00 0.00 35.67 1.40
437 438 4.819088 ACACATGGCAAAAACCCAAAATAC 59.181 37.500 0.00 0.00 35.67 1.89
438 439 4.215185 CACATGGCAAAAACCCAAAATACC 59.785 41.667 0.00 0.00 35.67 2.73
439 440 4.103943 ACATGGCAAAAACCCAAAATACCT 59.896 37.500 0.00 0.00 35.67 3.08
440 441 5.308237 ACATGGCAAAAACCCAAAATACCTA 59.692 36.000 0.00 0.00 35.67 3.08
441 442 6.012945 ACATGGCAAAAACCCAAAATACCTAT 60.013 34.615 0.00 0.00 35.67 2.57
442 443 6.441088 TGGCAAAAACCCAAAATACCTATT 57.559 33.333 0.00 0.00 0.00 1.73
443 444 6.842676 TGGCAAAAACCCAAAATACCTATTT 58.157 32.000 0.00 0.00 37.49 1.40
444 445 6.937465 TGGCAAAAACCCAAAATACCTATTTC 59.063 34.615 0.00 0.00 35.00 2.17
445 446 6.937465 GGCAAAAACCCAAAATACCTATTTCA 59.063 34.615 0.00 0.00 35.00 2.69
446 447 7.445707 GGCAAAAACCCAAAATACCTATTTCAA 59.554 33.333 0.00 0.00 35.00 2.69
447 448 8.841300 GCAAAAACCCAAAATACCTATTTCAAA 58.159 29.630 0.00 0.00 35.00 2.69
450 451 9.772973 AAAACCCAAAATACCTATTTCAAAGTC 57.227 29.630 0.00 0.00 35.00 3.01
451 452 7.153217 ACCCAAAATACCTATTTCAAAGTCG 57.847 36.000 0.00 0.00 35.00 4.18
452 453 6.943718 ACCCAAAATACCTATTTCAAAGTCGA 59.056 34.615 0.00 0.00 35.00 4.20
453 454 7.120726 ACCCAAAATACCTATTTCAAAGTCGAG 59.879 37.037 0.00 0.00 35.00 4.04
454 455 7.120726 CCCAAAATACCTATTTCAAAGTCGAGT 59.879 37.037 0.00 0.00 35.00 4.18
455 456 7.962918 CCAAAATACCTATTTCAAAGTCGAGTG 59.037 37.037 0.00 0.00 35.00 3.51
456 457 8.717821 CAAAATACCTATTTCAAAGTCGAGTGA 58.282 33.333 0.00 0.00 35.00 3.41
457 458 8.480643 AAATACCTATTTCAAAGTCGAGTGAG 57.519 34.615 0.00 0.00 30.50 3.51
458 459 4.246458 ACCTATTTCAAAGTCGAGTGAGC 58.754 43.478 0.00 0.00 0.00 4.26
459 460 4.021016 ACCTATTTCAAAGTCGAGTGAGCT 60.021 41.667 0.00 0.00 0.00 4.09
460 461 4.564769 CCTATTTCAAAGTCGAGTGAGCTC 59.435 45.833 6.82 6.82 38.35 4.09
461 462 3.735237 TTTCAAAGTCGAGTGAGCTCT 57.265 42.857 16.19 0.00 39.53 4.09
462 463 2.999507 TCAAAGTCGAGTGAGCTCTC 57.000 50.000 16.19 11.84 39.53 3.20
463 464 2.230660 TCAAAGTCGAGTGAGCTCTCA 58.769 47.619 16.19 0.00 39.53 3.27
509 510 7.223058 CACGTATAGTGTCTCTTGAATTTCC 57.777 40.000 0.00 0.00 45.51 3.13
510 511 6.811665 CACGTATAGTGTCTCTTGAATTTCCA 59.188 38.462 0.00 0.00 45.51 3.53
511 512 6.812160 ACGTATAGTGTCTCTTGAATTTCCAC 59.188 38.462 0.00 0.00 0.00 4.02
512 513 6.020599 CGTATAGTGTCTCTTGAATTTCCACG 60.021 42.308 0.00 0.00 0.00 4.94
516 517 2.548057 GTCTCTTGAATTTCCACGCACA 59.452 45.455 0.00 0.00 0.00 4.57
554 556 4.435917 ATGCATGCATATACGCAATACGTG 60.436 41.667 31.35 0.00 46.87 4.49
672 2496 2.093658 AGACAGACGGAGAGAGAGAGAC 60.094 54.545 0.00 0.00 0.00 3.36
691 2517 7.122650 AGAGAGACATTTAGAGAGAGAAACAGG 59.877 40.741 0.00 0.00 0.00 4.00
751 2677 2.011222 AGGTCGCTAGAGAGAGAAACG 58.989 52.381 0.00 0.00 32.85 3.60
769 2695 1.889829 ACGGAGAGTGAGAAACAGAGG 59.110 52.381 0.00 0.00 0.00 3.69
771 2697 2.252714 GGAGAGTGAGAAACAGAGGGT 58.747 52.381 0.00 0.00 0.00 4.34
832 2782 6.152379 CACAAAGACTTCCTTTTAGCATTCC 58.848 40.000 0.00 0.00 42.13 3.01
833 2783 5.833131 ACAAAGACTTCCTTTTAGCATTCCA 59.167 36.000 0.00 0.00 42.13 3.53
834 2784 6.323739 ACAAAGACTTCCTTTTAGCATTCCAA 59.676 34.615 0.00 0.00 42.13 3.53
888 2849 1.292546 CTCCCTCCCTCCCTCTAAACT 59.707 57.143 0.00 0.00 0.00 2.66
940 2904 6.038492 CCAACGAAACCTCAAAAACCTAACTA 59.962 38.462 0.00 0.00 0.00 2.24
949 2913 8.442374 ACCTCAAAAACCTAACTAATACCTTCA 58.558 33.333 0.00 0.00 0.00 3.02
969 2933 0.250513 GGCAGTGCTAGCTACACCTT 59.749 55.000 17.23 3.78 38.87 3.50
971 2935 2.427506 GCAGTGCTAGCTACACCTTTT 58.572 47.619 17.23 2.98 38.87 2.27
974 2938 4.319177 CAGTGCTAGCTACACCTTTTTCT 58.681 43.478 17.23 1.65 38.87 2.52
975 2939 4.390297 CAGTGCTAGCTACACCTTTTTCTC 59.610 45.833 17.23 0.00 38.87 2.87
982 2946 3.304726 GCTACACCTTTTTCTCCAGCAAC 60.305 47.826 0.00 0.00 0.00 4.17
1304 3323 0.902531 TGCTTCCTGGCTACACTACC 59.097 55.000 0.00 0.00 0.00 3.18
1311 3330 3.197766 TCCTGGCTACACTACCAATCTTG 59.802 47.826 0.00 0.00 34.96 3.02
1350 3654 0.788391 GCTGACGAGTTGGTTAACCG 59.212 55.000 19.65 9.64 37.52 4.44
1361 3713 5.861727 AGTTGGTTAACCGTCAAGAACTAT 58.138 37.500 19.65 0.51 37.52 2.12
1448 3800 3.768922 GACCTCAGCCTGCTCGCT 61.769 66.667 0.00 0.00 40.65 4.93
1698 4077 0.035725 CCAGAACATGCTGCTCCAGA 60.036 55.000 0.00 0.00 34.56 3.86
1775 4172 2.677003 CGGCATGTTCGACGGCTTT 61.677 57.895 4.93 0.00 32.24 3.51
1889 4304 1.080569 GGCGTGCAAGAACAATGGG 60.081 57.895 2.99 0.00 0.00 4.00
1897 4312 2.759560 GAACAATGGGGGCGGCAT 60.760 61.111 12.47 0.00 0.00 4.40
1899 4314 4.839706 ACAATGGGGGCGGCATCC 62.840 66.667 12.47 12.54 0.00 3.51
2019 4434 0.324830 AGAGTGAGTACCTGCTCCCC 60.325 60.000 0.00 0.00 34.74 4.81
2020 4435 0.324830 GAGTGAGTACCTGCTCCCCT 60.325 60.000 0.00 0.00 34.74 4.79
2021 4436 0.324830 AGTGAGTACCTGCTCCCCTC 60.325 60.000 0.00 0.00 34.74 4.30
2022 4437 1.001760 TGAGTACCTGCTCCCCTCC 59.998 63.158 0.00 0.00 34.74 4.30
2023 4438 1.762858 GAGTACCTGCTCCCCTCCC 60.763 68.421 0.00 0.00 0.00 4.30
2073 4491 7.803189 AGAAAAGTAGAAATAAACACACATGCG 59.197 33.333 0.00 0.00 0.00 4.73
2094 4512 2.673368 GTGCCTACATGTCTCTTTTCCG 59.327 50.000 0.00 0.00 0.00 4.30
2107 4528 3.414269 TCTTTTCCGTCCACCCAAATAC 58.586 45.455 0.00 0.00 0.00 1.89
2214 4657 7.814107 TCTGGAAATTAATTCACACAATGCTTC 59.186 33.333 0.10 0.00 39.98 3.86
2215 4658 7.440198 TGGAAATTAATTCACACAATGCTTCA 58.560 30.769 0.10 0.00 39.98 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.471022 GGCAAAACCCTTTCCTCCCA 60.471 55.000 0.00 0.00 0.00 4.37
1 2 0.178932 AGGCAAAACCCTTTCCTCCC 60.179 55.000 0.00 0.00 40.58 4.30
2 3 1.344438 CAAGGCAAAACCCTTTCCTCC 59.656 52.381 0.00 0.00 42.48 4.30
3 4 1.344438 CCAAGGCAAAACCCTTTCCTC 59.656 52.381 0.00 0.00 42.48 3.71
4 5 1.423584 CCAAGGCAAAACCCTTTCCT 58.576 50.000 0.00 0.00 42.48 3.36
5 6 0.396435 CCCAAGGCAAAACCCTTTCC 59.604 55.000 0.00 0.00 42.48 3.13
6 7 0.396435 CCCCAAGGCAAAACCCTTTC 59.604 55.000 0.00 0.00 42.48 2.62
7 8 0.327095 ACCCCAAGGCAAAACCCTTT 60.327 50.000 0.00 0.00 42.48 3.11
8 9 0.327095 AACCCCAAGGCAAAACCCTT 60.327 50.000 0.00 0.00 45.94 3.95
9 10 0.762842 GAACCCCAAGGCAAAACCCT 60.763 55.000 0.00 0.00 40.58 4.34
10 11 0.762842 AGAACCCCAAGGCAAAACCC 60.763 55.000 0.00 0.00 40.58 4.11
11 12 1.893137 CTAGAACCCCAAGGCAAAACC 59.107 52.381 0.00 0.00 36.11 3.27
12 13 2.557056 GACTAGAACCCCAAGGCAAAAC 59.443 50.000 0.00 0.00 36.11 2.43
13 14 2.175931 TGACTAGAACCCCAAGGCAAAA 59.824 45.455 0.00 0.00 36.11 2.44
14 15 1.777878 TGACTAGAACCCCAAGGCAAA 59.222 47.619 0.00 0.00 36.11 3.68
15 16 1.440618 TGACTAGAACCCCAAGGCAA 58.559 50.000 0.00 0.00 36.11 4.52
16 17 1.440618 TTGACTAGAACCCCAAGGCA 58.559 50.000 0.00 0.00 36.11 4.75
17 18 2.579410 TTTGACTAGAACCCCAAGGC 57.421 50.000 0.00 0.00 36.11 4.35
18 19 6.246163 ACTTTATTTGACTAGAACCCCAAGG 58.754 40.000 0.00 0.00 40.04 3.61
19 20 8.319146 TCTACTTTATTTGACTAGAACCCCAAG 58.681 37.037 0.00 0.00 0.00 3.61
20 21 8.098912 GTCTACTTTATTTGACTAGAACCCCAA 58.901 37.037 0.00 0.00 0.00 4.12
21 22 7.236019 TGTCTACTTTATTTGACTAGAACCCCA 59.764 37.037 0.00 0.00 0.00 4.96
22 23 7.618137 TGTCTACTTTATTTGACTAGAACCCC 58.382 38.462 0.00 0.00 0.00 4.95
50 51 6.830873 ATGTATGCTTCTCTGCTTCTTTTT 57.169 33.333 0.00 0.00 0.00 1.94
51 52 6.830873 AATGTATGCTTCTCTGCTTCTTTT 57.169 33.333 0.00 0.00 0.00 2.27
52 53 6.830873 AAATGTATGCTTCTCTGCTTCTTT 57.169 33.333 0.00 0.00 0.00 2.52
53 54 6.658391 AGAAAATGTATGCTTCTCTGCTTCTT 59.342 34.615 0.00 0.00 0.00 2.52
54 55 6.179040 AGAAAATGTATGCTTCTCTGCTTCT 58.821 36.000 0.00 0.00 0.00 2.85
55 56 6.434018 AGAAAATGTATGCTTCTCTGCTTC 57.566 37.500 0.00 0.00 0.00 3.86
56 57 6.208204 ACAAGAAAATGTATGCTTCTCTGCTT 59.792 34.615 0.00 0.00 0.00 3.91
57 58 5.709164 ACAAGAAAATGTATGCTTCTCTGCT 59.291 36.000 0.00 0.00 0.00 4.24
58 59 5.947443 ACAAGAAAATGTATGCTTCTCTGC 58.053 37.500 0.00 0.00 0.00 4.26
59 60 7.333921 AGAGACAAGAAAATGTATGCTTCTCTG 59.666 37.037 0.00 0.00 30.41 3.35
60 61 7.393216 AGAGACAAGAAAATGTATGCTTCTCT 58.607 34.615 0.00 0.00 32.57 3.10
61 62 7.608308 AGAGACAAGAAAATGTATGCTTCTC 57.392 36.000 0.00 0.00 32.57 2.87
62 63 8.940952 GTTAGAGACAAGAAAATGTATGCTTCT 58.059 33.333 0.00 0.00 32.57 2.85
63 64 8.940952 AGTTAGAGACAAGAAAATGTATGCTTC 58.059 33.333 0.00 0.00 32.57 3.86
64 65 8.725148 CAGTTAGAGACAAGAAAATGTATGCTT 58.275 33.333 0.00 0.00 32.57 3.91
65 66 7.148340 GCAGTTAGAGACAAGAAAATGTATGCT 60.148 37.037 0.00 0.00 32.57 3.79
66 67 6.963805 GCAGTTAGAGACAAGAAAATGTATGC 59.036 38.462 0.00 0.00 32.57 3.14
67 68 8.261492 AGCAGTTAGAGACAAGAAAATGTATG 57.739 34.615 0.00 0.00 32.57 2.39
68 69 9.593134 CTAGCAGTTAGAGACAAGAAAATGTAT 57.407 33.333 0.00 0.00 32.57 2.29
69 70 8.035394 CCTAGCAGTTAGAGACAAGAAAATGTA 58.965 37.037 0.00 0.00 32.57 2.29
70 71 6.876257 CCTAGCAGTTAGAGACAAGAAAATGT 59.124 38.462 0.00 0.00 35.90 2.71
71 72 6.183360 GCCTAGCAGTTAGAGACAAGAAAATG 60.183 42.308 0.00 0.00 0.00 2.32
72 73 5.877564 GCCTAGCAGTTAGAGACAAGAAAAT 59.122 40.000 0.00 0.00 0.00 1.82
73 74 5.012148 AGCCTAGCAGTTAGAGACAAGAAAA 59.988 40.000 0.00 0.00 0.00 2.29
74 75 4.528596 AGCCTAGCAGTTAGAGACAAGAAA 59.471 41.667 0.00 0.00 0.00 2.52
75 76 4.090090 AGCCTAGCAGTTAGAGACAAGAA 58.910 43.478 0.00 0.00 0.00 2.52
76 77 3.702792 AGCCTAGCAGTTAGAGACAAGA 58.297 45.455 0.00 0.00 0.00 3.02
77 78 4.464069 AAGCCTAGCAGTTAGAGACAAG 57.536 45.455 0.00 0.00 0.00 3.16
78 79 4.891992 AAAGCCTAGCAGTTAGAGACAA 57.108 40.909 0.00 0.00 0.00 3.18
79 80 4.891992 AAAAGCCTAGCAGTTAGAGACA 57.108 40.909 0.00 0.00 0.00 3.41
112 113 9.270640 ACATATGCAAAAAGCTATTGAACAAAA 57.729 25.926 14.52 0.86 45.94 2.44
113 114 8.710551 CACATATGCAAAAAGCTATTGAACAAA 58.289 29.630 14.52 0.00 45.94 2.83
114 115 7.871973 ACACATATGCAAAAAGCTATTGAACAA 59.128 29.630 14.52 0.00 45.94 2.83
115 116 7.377398 ACACATATGCAAAAAGCTATTGAACA 58.623 30.769 14.52 5.87 45.94 3.18
116 117 7.816945 ACACATATGCAAAAAGCTATTGAAC 57.183 32.000 14.52 1.03 45.94 3.18
117 118 7.331440 CCAACACATATGCAAAAAGCTATTGAA 59.669 33.333 14.52 5.92 45.94 2.69
118 119 6.812656 CCAACACATATGCAAAAAGCTATTGA 59.187 34.615 14.52 2.76 45.94 2.57
119 120 6.591062 ACCAACACATATGCAAAAAGCTATTG 59.409 34.615 1.58 7.61 45.94 1.90
120 121 6.700352 ACCAACACATATGCAAAAAGCTATT 58.300 32.000 1.58 0.00 45.94 1.73
121 122 6.284891 ACCAACACATATGCAAAAAGCTAT 57.715 33.333 1.58 0.00 45.94 2.97
122 123 5.720371 ACCAACACATATGCAAAAAGCTA 57.280 34.783 1.58 0.00 45.94 3.32
123 124 4.605640 ACCAACACATATGCAAAAAGCT 57.394 36.364 1.58 0.00 45.94 3.74
124 125 6.777526 TTTACCAACACATATGCAAAAAGC 57.222 33.333 1.58 0.00 45.96 3.51
137 138 9.908152 GGCCTATGAAAATATATTTACCAACAC 57.092 33.333 11.07 0.74 0.00 3.32
138 139 9.647918 TGGCCTATGAAAATATATTTACCAACA 57.352 29.630 11.07 7.49 0.00 3.33
140 141 8.802267 GCTGGCCTATGAAAATATATTTACCAA 58.198 33.333 11.07 0.00 0.00 3.67
141 142 7.947332 TGCTGGCCTATGAAAATATATTTACCA 59.053 33.333 11.07 12.02 0.00 3.25
142 143 8.244113 GTGCTGGCCTATGAAAATATATTTACC 58.756 37.037 11.07 7.22 0.00 2.85
143 144 8.244113 GGTGCTGGCCTATGAAAATATATTTAC 58.756 37.037 11.07 1.57 0.00 2.01
144 145 7.947332 TGGTGCTGGCCTATGAAAATATATTTA 59.053 33.333 11.07 0.00 0.00 1.40
145 146 6.782000 TGGTGCTGGCCTATGAAAATATATTT 59.218 34.615 3.32 4.81 0.00 1.40
146 147 6.314120 TGGTGCTGGCCTATGAAAATATATT 58.686 36.000 3.32 0.00 0.00 1.28
147 148 5.891198 TGGTGCTGGCCTATGAAAATATAT 58.109 37.500 3.32 0.00 0.00 0.86
148 149 5.316167 CTGGTGCTGGCCTATGAAAATATA 58.684 41.667 3.32 0.00 0.00 0.86
149 150 4.147321 CTGGTGCTGGCCTATGAAAATAT 58.853 43.478 3.32 0.00 0.00 1.28
150 151 3.554934 CTGGTGCTGGCCTATGAAAATA 58.445 45.455 3.32 0.00 0.00 1.40
151 152 2.381911 CTGGTGCTGGCCTATGAAAAT 58.618 47.619 3.32 0.00 0.00 1.82
152 153 1.838112 CTGGTGCTGGCCTATGAAAA 58.162 50.000 3.32 0.00 0.00 2.29
153 154 0.680921 GCTGGTGCTGGCCTATGAAA 60.681 55.000 3.32 0.00 36.03 2.69
154 155 1.077501 GCTGGTGCTGGCCTATGAA 60.078 57.895 3.32 0.00 36.03 2.57
155 156 2.591753 GCTGGTGCTGGCCTATGA 59.408 61.111 3.32 0.00 36.03 2.15
156 157 2.517875 GGCTGGTGCTGGCCTATG 60.518 66.667 3.32 0.00 44.48 2.23
157 158 3.813724 GGGCTGGTGCTGGCCTAT 61.814 66.667 3.32 0.00 46.80 2.57
166 167 4.394712 GACTGGGTCGGGCTGGTG 62.395 72.222 0.00 0.00 0.00 4.17
167 168 4.954118 TGACTGGGTCGGGCTGGT 62.954 66.667 0.00 0.00 34.95 4.00
168 169 4.087892 CTGACTGGGTCGGGCTGG 62.088 72.222 0.00 0.00 35.49 4.85
169 170 2.583441 TTCTGACTGGGTCGGGCTG 61.583 63.158 6.66 0.00 39.23 4.85
170 171 2.203788 TTCTGACTGGGTCGGGCT 60.204 61.111 6.66 0.00 39.23 5.19
171 172 2.047179 GTTCTGACTGGGTCGGGC 60.047 66.667 6.66 0.00 39.23 6.13
172 173 0.107831 TTTGTTCTGACTGGGTCGGG 59.892 55.000 6.66 0.00 39.23 5.14
173 174 1.226746 GTTTGTTCTGACTGGGTCGG 58.773 55.000 0.49 0.49 40.02 4.79
174 175 1.948104 TGTTTGTTCTGACTGGGTCG 58.052 50.000 0.00 0.00 34.95 4.79
175 176 4.918810 ATTTGTTTGTTCTGACTGGGTC 57.081 40.909 0.00 0.00 0.00 4.46
176 177 4.709397 TCAATTTGTTTGTTCTGACTGGGT 59.291 37.500 0.00 0.00 36.65 4.51
177 178 5.067674 TCTCAATTTGTTTGTTCTGACTGGG 59.932 40.000 0.00 0.00 36.65 4.45
178 179 6.135290 TCTCAATTTGTTTGTTCTGACTGG 57.865 37.500 0.00 0.00 36.65 4.00
179 180 7.253883 GCTTTCTCAATTTGTTTGTTCTGACTG 60.254 37.037 0.00 0.00 36.65 3.51
180 181 6.753744 GCTTTCTCAATTTGTTTGTTCTGACT 59.246 34.615 0.00 0.00 36.65 3.41
181 182 6.019559 GGCTTTCTCAATTTGTTTGTTCTGAC 60.020 38.462 0.00 0.00 36.65 3.51
182 183 6.042143 GGCTTTCTCAATTTGTTTGTTCTGA 58.958 36.000 0.00 0.00 36.65 3.27
183 184 5.234972 GGGCTTTCTCAATTTGTTTGTTCTG 59.765 40.000 0.00 0.00 36.65 3.02
184 185 5.104982 TGGGCTTTCTCAATTTGTTTGTTCT 60.105 36.000 0.00 0.00 36.65 3.01
185 186 5.115480 TGGGCTTTCTCAATTTGTTTGTTC 58.885 37.500 0.00 0.00 36.65 3.18
186 187 5.096443 TGGGCTTTCTCAATTTGTTTGTT 57.904 34.783 0.00 0.00 36.65 2.83
187 188 4.696455 CTGGGCTTTCTCAATTTGTTTGT 58.304 39.130 0.00 0.00 36.65 2.83
188 189 3.495753 GCTGGGCTTTCTCAATTTGTTTG 59.504 43.478 0.00 0.00 36.61 2.93
189 190 3.494924 GGCTGGGCTTTCTCAATTTGTTT 60.495 43.478 0.00 0.00 0.00 2.83
190 191 2.037641 GGCTGGGCTTTCTCAATTTGTT 59.962 45.455 0.00 0.00 0.00 2.83
191 192 1.620323 GGCTGGGCTTTCTCAATTTGT 59.380 47.619 0.00 0.00 0.00 2.83
192 193 1.619827 TGGCTGGGCTTTCTCAATTTG 59.380 47.619 0.00 0.00 0.00 2.32
193 194 2.014010 TGGCTGGGCTTTCTCAATTT 57.986 45.000 0.00 0.00 0.00 1.82
194 195 2.014010 TTGGCTGGGCTTTCTCAATT 57.986 45.000 0.00 0.00 0.00 2.32
195 196 1.620323 GTTTGGCTGGGCTTTCTCAAT 59.380 47.619 0.00 0.00 0.00 2.57
196 197 1.039856 GTTTGGCTGGGCTTTCTCAA 58.960 50.000 0.00 0.00 0.00 3.02
197 198 0.106268 TGTTTGGCTGGGCTTTCTCA 60.106 50.000 0.00 0.00 0.00 3.27
198 199 1.260544 ATGTTTGGCTGGGCTTTCTC 58.739 50.000 0.00 0.00 0.00 2.87
199 200 2.562738 GTTATGTTTGGCTGGGCTTTCT 59.437 45.455 0.00 0.00 0.00 2.52
200 201 2.298729 TGTTATGTTTGGCTGGGCTTTC 59.701 45.455 0.00 0.00 0.00 2.62
201 202 2.324541 TGTTATGTTTGGCTGGGCTTT 58.675 42.857 0.00 0.00 0.00 3.51
202 203 2.008242 TGTTATGTTTGGCTGGGCTT 57.992 45.000 0.00 0.00 0.00 4.35
203 204 2.008242 TTGTTATGTTTGGCTGGGCT 57.992 45.000 0.00 0.00 0.00 5.19
204 205 2.224161 TGTTTGTTATGTTTGGCTGGGC 60.224 45.455 0.00 0.00 0.00 5.36
205 206 3.742433 TGTTTGTTATGTTTGGCTGGG 57.258 42.857 0.00 0.00 0.00 4.45
206 207 3.494251 GCTTGTTTGTTATGTTTGGCTGG 59.506 43.478 0.00 0.00 0.00 4.85
207 208 4.118410 TGCTTGTTTGTTATGTTTGGCTG 58.882 39.130 0.00 0.00 0.00 4.85
208 209 4.399004 TGCTTGTTTGTTATGTTTGGCT 57.601 36.364 0.00 0.00 0.00 4.75
209 210 5.163814 TGTTTGCTTGTTTGTTATGTTTGGC 60.164 36.000 0.00 0.00 0.00 4.52
210 211 6.414408 TGTTTGCTTGTTTGTTATGTTTGG 57.586 33.333 0.00 0.00 0.00 3.28
211 212 6.312426 TCCTGTTTGCTTGTTTGTTATGTTTG 59.688 34.615 0.00 0.00 0.00 2.93
212 213 6.402222 TCCTGTTTGCTTGTTTGTTATGTTT 58.598 32.000 0.00 0.00 0.00 2.83
213 214 5.971763 TCCTGTTTGCTTGTTTGTTATGTT 58.028 33.333 0.00 0.00 0.00 2.71
214 215 5.590530 TCCTGTTTGCTTGTTTGTTATGT 57.409 34.783 0.00 0.00 0.00 2.29
215 216 6.900568 TTTCCTGTTTGCTTGTTTGTTATG 57.099 33.333 0.00 0.00 0.00 1.90
216 217 9.606631 TTATTTTCCTGTTTGCTTGTTTGTTAT 57.393 25.926 0.00 0.00 0.00 1.89
217 218 9.436957 TTTATTTTCCTGTTTGCTTGTTTGTTA 57.563 25.926 0.00 0.00 0.00 2.41
218 219 7.913674 TTATTTTCCTGTTTGCTTGTTTGTT 57.086 28.000 0.00 0.00 0.00 2.83
219 220 7.913674 TTTATTTTCCTGTTTGCTTGTTTGT 57.086 28.000 0.00 0.00 0.00 2.83
244 245 0.471780 CCTGGGTTCTGGGCCTTTTT 60.472 55.000 4.53 0.00 0.00 1.94
245 246 1.156095 CCTGGGTTCTGGGCCTTTT 59.844 57.895 4.53 0.00 0.00 2.27
246 247 2.081585 GACCTGGGTTCTGGGCCTTT 62.082 60.000 4.53 0.00 34.27 3.11
247 248 2.452491 ACCTGGGTTCTGGGCCTT 60.452 61.111 4.53 0.00 36.44 4.35
248 249 2.936032 GACCTGGGTTCTGGGCCT 60.936 66.667 4.53 0.00 34.27 5.19
249 250 4.410400 CGACCTGGGTTCTGGGCC 62.410 72.222 0.00 0.00 36.74 5.80
250 251 4.410400 CCGACCTGGGTTCTGGGC 62.410 72.222 0.00 0.00 36.73 5.36
251 252 0.689745 TATCCGACCTGGGTTCTGGG 60.690 60.000 0.00 0.00 38.76 4.45
252 253 0.464452 GTATCCGACCTGGGTTCTGG 59.536 60.000 0.00 0.00 38.76 3.86
253 254 1.191535 TGTATCCGACCTGGGTTCTG 58.808 55.000 0.00 0.00 38.76 3.02
254 255 1.946984 TTGTATCCGACCTGGGTTCT 58.053 50.000 0.00 0.00 38.76 3.01
255 256 2.484947 GGATTGTATCCGACCTGGGTTC 60.485 54.545 0.00 0.00 40.13 3.62
256 257 1.489230 GGATTGTATCCGACCTGGGTT 59.511 52.381 0.00 0.00 40.13 4.11
257 258 1.129058 GGATTGTATCCGACCTGGGT 58.871 55.000 0.00 0.00 40.13 4.51
267 268 3.831911 CTCTCCCTCTCCTGGATTGTATC 59.168 52.174 0.00 0.00 0.00 2.24
268 269 3.855668 CTCTCCCTCTCCTGGATTGTAT 58.144 50.000 0.00 0.00 0.00 2.29
269 270 2.691241 GCTCTCCCTCTCCTGGATTGTA 60.691 54.545 0.00 0.00 0.00 2.41
270 271 1.969240 GCTCTCCCTCTCCTGGATTGT 60.969 57.143 0.00 0.00 0.00 2.71
271 272 0.758123 GCTCTCCCTCTCCTGGATTG 59.242 60.000 0.00 0.00 0.00 2.67
272 273 0.641601 AGCTCTCCCTCTCCTGGATT 59.358 55.000 0.00 0.00 0.00 3.01
273 274 1.428912 CTAGCTCTCCCTCTCCTGGAT 59.571 57.143 0.00 0.00 0.00 3.41
274 275 0.850100 CTAGCTCTCCCTCTCCTGGA 59.150 60.000 0.00 0.00 0.00 3.86
275 276 0.555769 ACTAGCTCTCCCTCTCCTGG 59.444 60.000 0.00 0.00 0.00 4.45
276 277 2.452600 AACTAGCTCTCCCTCTCCTG 57.547 55.000 0.00 0.00 0.00 3.86
277 278 3.269906 TGTTAACTAGCTCTCCCTCTCCT 59.730 47.826 7.22 0.00 0.00 3.69
278 279 3.633418 TGTTAACTAGCTCTCCCTCTCC 58.367 50.000 7.22 0.00 0.00 3.71
279 280 3.634910 CCTGTTAACTAGCTCTCCCTCTC 59.365 52.174 7.22 0.00 0.00 3.20
280 281 3.637769 CCTGTTAACTAGCTCTCCCTCT 58.362 50.000 7.22 0.00 0.00 3.69
281 282 2.101750 GCCTGTTAACTAGCTCTCCCTC 59.898 54.545 7.22 0.00 0.00 4.30
282 283 2.112190 GCCTGTTAACTAGCTCTCCCT 58.888 52.381 7.22 0.00 0.00 4.20
283 284 1.139256 GGCCTGTTAACTAGCTCTCCC 59.861 57.143 16.53 0.98 0.00 4.30
284 285 2.112190 AGGCCTGTTAACTAGCTCTCC 58.888 52.381 3.11 5.39 0.00 3.71
285 286 5.538849 ATTAGGCCTGTTAACTAGCTCTC 57.461 43.478 17.99 4.50 0.00 3.20
286 287 5.959583 AATTAGGCCTGTTAACTAGCTCT 57.040 39.130 17.99 14.20 0.00 4.09
287 288 7.046033 TGTAAATTAGGCCTGTTAACTAGCTC 58.954 38.462 17.99 9.33 0.00 4.09
288 289 6.954232 TGTAAATTAGGCCTGTTAACTAGCT 58.046 36.000 17.99 0.00 0.00 3.32
289 290 7.803279 ATGTAAATTAGGCCTGTTAACTAGC 57.197 36.000 17.99 9.30 0.00 3.42
290 291 9.490379 CCTATGTAAATTAGGCCTGTTAACTAG 57.510 37.037 17.99 13.26 30.39 2.57
291 292 9.216148 TCCTATGTAAATTAGGCCTGTTAACTA 57.784 33.333 17.99 5.64 36.87 2.24
292 293 8.097791 TCCTATGTAAATTAGGCCTGTTAACT 57.902 34.615 17.99 4.82 36.87 2.24
293 294 8.784043 CATCCTATGTAAATTAGGCCTGTTAAC 58.216 37.037 17.99 7.81 36.87 2.01
294 295 8.719596 TCATCCTATGTAAATTAGGCCTGTTAA 58.280 33.333 17.99 1.10 36.87 2.01
295 296 8.270137 TCATCCTATGTAAATTAGGCCTGTTA 57.730 34.615 17.99 8.41 36.87 2.41
296 297 7.149202 TCATCCTATGTAAATTAGGCCTGTT 57.851 36.000 17.99 7.54 36.87 3.16
297 298 6.763715 TCATCCTATGTAAATTAGGCCTGT 57.236 37.500 17.99 0.00 36.87 4.00
298 299 7.170965 ACATCATCCTATGTAAATTAGGCCTG 58.829 38.462 17.99 0.00 38.31 4.85
299 300 7.017551 TGACATCATCCTATGTAAATTAGGCCT 59.982 37.037 11.78 11.78 40.17 5.19
300 301 7.168219 TGACATCATCCTATGTAAATTAGGCC 58.832 38.462 0.00 0.00 40.17 5.19
301 302 7.148340 GCTGACATCATCCTATGTAAATTAGGC 60.148 40.741 0.00 0.00 40.17 3.93
302 303 8.099537 AGCTGACATCATCCTATGTAAATTAGG 58.900 37.037 0.00 0.00 40.17 2.69
303 304 8.933807 CAGCTGACATCATCCTATGTAAATTAG 58.066 37.037 8.42 0.00 40.17 1.73
304 305 8.650490 TCAGCTGACATCATCCTATGTAAATTA 58.350 33.333 13.74 0.00 40.17 1.40
305 306 7.443575 GTCAGCTGACATCATCCTATGTAAATT 59.556 37.037 36.23 0.00 44.18 1.82
306 307 6.933521 GTCAGCTGACATCATCCTATGTAAAT 59.066 38.462 36.23 0.00 44.18 1.40
307 308 6.283694 GTCAGCTGACATCATCCTATGTAAA 58.716 40.000 36.23 0.00 44.18 2.01
308 309 5.847304 GTCAGCTGACATCATCCTATGTAA 58.153 41.667 36.23 0.00 44.18 2.41
309 310 5.459536 GTCAGCTGACATCATCCTATGTA 57.540 43.478 36.23 0.00 44.18 2.29
310 311 4.333913 GTCAGCTGACATCATCCTATGT 57.666 45.455 36.23 0.00 44.18 2.29
322 323 2.255316 GCGAAGTCTTAGTCAGCTGAC 58.745 52.381 34.82 34.82 45.08 3.51
323 324 1.135660 CGCGAAGTCTTAGTCAGCTGA 60.136 52.381 13.74 13.74 0.00 4.26
324 325 1.135660 TCGCGAAGTCTTAGTCAGCTG 60.136 52.381 6.20 7.63 0.00 4.24
325 326 1.166129 TCGCGAAGTCTTAGTCAGCT 58.834 50.000 6.20 0.00 0.00 4.24
326 327 1.914700 CTTCGCGAAGTCTTAGTCAGC 59.085 52.381 34.97 0.00 33.87 4.26
337 338 1.716581 GTCAACTGAGACTTCGCGAAG 59.283 52.381 39.55 39.55 43.79 3.79
338 339 1.337071 AGTCAACTGAGACTTCGCGAA 59.663 47.619 22.01 22.01 46.26 4.70
339 340 0.952280 AGTCAACTGAGACTTCGCGA 59.048 50.000 3.71 3.71 46.26 5.87
340 341 1.056103 CAGTCAACTGAGACTTCGCG 58.944 55.000 0.00 0.00 46.26 5.87
341 342 2.423926 TCAGTCAACTGAGACTTCGC 57.576 50.000 8.75 0.00 46.26 4.70
350 351 3.498777 TCAGTCTACGTCTCAGTCAACTG 59.501 47.826 3.69 3.69 45.08 3.16
351 352 3.499157 GTCAGTCTACGTCTCAGTCAACT 59.501 47.826 0.00 0.00 0.00 3.16
352 353 3.365164 GGTCAGTCTACGTCTCAGTCAAC 60.365 52.174 0.00 0.00 0.00 3.18
353 354 2.812591 GGTCAGTCTACGTCTCAGTCAA 59.187 50.000 0.00 0.00 0.00 3.18
354 355 2.424557 GGTCAGTCTACGTCTCAGTCA 58.575 52.381 0.00 0.00 0.00 3.41
355 356 1.738908 GGGTCAGTCTACGTCTCAGTC 59.261 57.143 0.00 0.00 0.00 3.51
356 357 1.073444 TGGGTCAGTCTACGTCTCAGT 59.927 52.381 0.00 0.00 0.00 3.41
357 358 1.822506 TGGGTCAGTCTACGTCTCAG 58.177 55.000 0.00 0.00 0.00 3.35
358 359 2.281539 TTGGGTCAGTCTACGTCTCA 57.718 50.000 0.00 0.00 0.00 3.27
359 360 2.295349 TGTTTGGGTCAGTCTACGTCTC 59.705 50.000 0.00 0.00 0.00 3.36
360 361 2.035576 GTGTTTGGGTCAGTCTACGTCT 59.964 50.000 0.00 0.00 0.00 4.18
361 362 2.223876 TGTGTTTGGGTCAGTCTACGTC 60.224 50.000 0.00 0.00 0.00 4.34
362 363 1.758280 TGTGTTTGGGTCAGTCTACGT 59.242 47.619 0.00 0.00 0.00 3.57
363 364 2.519377 TGTGTTTGGGTCAGTCTACG 57.481 50.000 0.00 0.00 0.00 3.51
364 365 5.767816 ATTTTGTGTTTGGGTCAGTCTAC 57.232 39.130 0.00 0.00 0.00 2.59
365 366 7.227873 TGATATTTTGTGTTTGGGTCAGTCTA 58.772 34.615 0.00 0.00 0.00 2.59
366 367 6.068010 TGATATTTTGTGTTTGGGTCAGTCT 58.932 36.000 0.00 0.00 0.00 3.24
367 368 6.206634 TCTGATATTTTGTGTTTGGGTCAGTC 59.793 38.462 0.00 0.00 33.96 3.51
368 369 6.016276 GTCTGATATTTTGTGTTTGGGTCAGT 60.016 38.462 0.00 0.00 33.96 3.41
369 370 6.016360 TGTCTGATATTTTGTGTTTGGGTCAG 60.016 38.462 0.00 0.00 33.65 3.51
370 371 5.830457 TGTCTGATATTTTGTGTTTGGGTCA 59.170 36.000 0.00 0.00 0.00 4.02
371 372 6.149633 GTGTCTGATATTTTGTGTTTGGGTC 58.850 40.000 0.00 0.00 0.00 4.46
372 373 5.596361 TGTGTCTGATATTTTGTGTTTGGGT 59.404 36.000 0.00 0.00 0.00 4.51
373 374 6.083098 TGTGTCTGATATTTTGTGTTTGGG 57.917 37.500 0.00 0.00 0.00 4.12
374 375 6.151691 CCTGTGTCTGATATTTTGTGTTTGG 58.848 40.000 0.00 0.00 0.00 3.28
375 376 6.151691 CCCTGTGTCTGATATTTTGTGTTTG 58.848 40.000 0.00 0.00 0.00 2.93
376 377 5.833131 ACCCTGTGTCTGATATTTTGTGTTT 59.167 36.000 0.00 0.00 0.00 2.83
377 378 5.385198 ACCCTGTGTCTGATATTTTGTGTT 58.615 37.500 0.00 0.00 0.00 3.32
378 379 4.985538 ACCCTGTGTCTGATATTTTGTGT 58.014 39.130 0.00 0.00 0.00 3.72
379 380 5.551760 GACCCTGTGTCTGATATTTTGTG 57.448 43.478 0.00 0.00 41.03 3.33
403 404 2.234143 TGCCATGTGTCCGATCAAAAA 58.766 42.857 0.00 0.00 0.00 1.94
404 405 1.902938 TGCCATGTGTCCGATCAAAA 58.097 45.000 0.00 0.00 0.00 2.44
405 406 1.902938 TTGCCATGTGTCCGATCAAA 58.097 45.000 0.00 0.00 0.00 2.69
406 407 1.902938 TTTGCCATGTGTCCGATCAA 58.097 45.000 0.00 0.00 0.00 2.57
407 408 1.902938 TTTTGCCATGTGTCCGATCA 58.097 45.000 0.00 0.00 0.00 2.92
408 409 2.595386 GTTTTTGCCATGTGTCCGATC 58.405 47.619 0.00 0.00 0.00 3.69
409 410 1.272212 GGTTTTTGCCATGTGTCCGAT 59.728 47.619 0.00 0.00 0.00 4.18
410 411 0.671251 GGTTTTTGCCATGTGTCCGA 59.329 50.000 0.00 0.00 0.00 4.55
411 412 0.319469 GGGTTTTTGCCATGTGTCCG 60.319 55.000 0.00 0.00 0.00 4.79
412 413 0.755686 TGGGTTTTTGCCATGTGTCC 59.244 50.000 0.00 0.00 0.00 4.02
413 414 2.611225 TTGGGTTTTTGCCATGTGTC 57.389 45.000 0.00 0.00 0.00 3.67
414 415 3.356529 TTTTGGGTTTTTGCCATGTGT 57.643 38.095 0.00 0.00 0.00 3.72
415 416 4.215185 GGTATTTTGGGTTTTTGCCATGTG 59.785 41.667 0.00 0.00 0.00 3.21
416 417 4.103943 AGGTATTTTGGGTTTTTGCCATGT 59.896 37.500 0.00 0.00 0.00 3.21
417 418 4.650734 AGGTATTTTGGGTTTTTGCCATG 58.349 39.130 0.00 0.00 0.00 3.66
418 419 4.991789 AGGTATTTTGGGTTTTTGCCAT 57.008 36.364 0.00 0.00 0.00 4.40
419 420 6.441088 AATAGGTATTTTGGGTTTTTGCCA 57.559 33.333 0.00 0.00 0.00 4.92
420 421 6.937465 TGAAATAGGTATTTTGGGTTTTTGCC 59.063 34.615 0.00 0.00 36.13 4.52
421 422 7.971183 TGAAATAGGTATTTTGGGTTTTTGC 57.029 32.000 0.00 0.00 36.13 3.68
424 425 9.772973 GACTTTGAAATAGGTATTTTGGGTTTT 57.227 29.630 0.00 0.00 36.13 2.43
425 426 8.085909 CGACTTTGAAATAGGTATTTTGGGTTT 58.914 33.333 0.00 0.00 36.13 3.27
426 427 7.449086 TCGACTTTGAAATAGGTATTTTGGGTT 59.551 33.333 0.00 0.00 36.13 4.11
427 428 6.943718 TCGACTTTGAAATAGGTATTTTGGGT 59.056 34.615 0.00 0.00 36.13 4.51
428 429 7.120726 ACTCGACTTTGAAATAGGTATTTTGGG 59.879 37.037 0.00 0.00 36.13 4.12
429 430 7.962918 CACTCGACTTTGAAATAGGTATTTTGG 59.037 37.037 0.00 0.00 36.13 3.28
430 431 8.717821 TCACTCGACTTTGAAATAGGTATTTTG 58.282 33.333 0.00 0.00 36.13 2.44
431 432 8.842358 TCACTCGACTTTGAAATAGGTATTTT 57.158 30.769 0.00 0.00 36.13 1.82
432 433 7.064728 GCTCACTCGACTTTGAAATAGGTATTT 59.935 37.037 0.00 0.00 38.51 1.40
433 434 6.535508 GCTCACTCGACTTTGAAATAGGTATT 59.464 38.462 0.00 0.00 0.00 1.89
434 435 6.043411 GCTCACTCGACTTTGAAATAGGTAT 58.957 40.000 0.00 0.00 0.00 2.73
435 436 5.185249 AGCTCACTCGACTTTGAAATAGGTA 59.815 40.000 0.00 0.00 0.00 3.08
436 437 4.021016 AGCTCACTCGACTTTGAAATAGGT 60.021 41.667 0.00 0.00 0.00 3.08
437 438 4.499183 AGCTCACTCGACTTTGAAATAGG 58.501 43.478 0.00 0.00 0.00 2.57
438 439 5.694674 GAGCTCACTCGACTTTGAAATAG 57.305 43.478 9.40 0.00 32.04 1.73
453 454 9.100554 ACGTATATATACATAGTGAGAGCTCAC 57.899 37.037 20.11 20.11 44.68 3.51
486 487 6.812160 GTGGAAATTCAAGAGACACTATACGT 59.188 38.462 0.00 0.00 0.00 3.57
487 488 6.020599 CGTGGAAATTCAAGAGACACTATACG 60.021 42.308 0.00 0.00 0.00 3.06
488 489 6.237861 GCGTGGAAATTCAAGAGACACTATAC 60.238 42.308 0.00 0.00 0.00 1.47
489 490 5.810587 GCGTGGAAATTCAAGAGACACTATA 59.189 40.000 0.00 0.00 0.00 1.31
490 491 4.631813 GCGTGGAAATTCAAGAGACACTAT 59.368 41.667 0.00 0.00 0.00 2.12
491 492 3.994392 GCGTGGAAATTCAAGAGACACTA 59.006 43.478 0.00 0.00 0.00 2.74
492 493 2.808543 GCGTGGAAATTCAAGAGACACT 59.191 45.455 0.00 0.00 0.00 3.55
493 494 2.548057 TGCGTGGAAATTCAAGAGACAC 59.452 45.455 0.00 0.00 0.00 3.67
494 495 2.548057 GTGCGTGGAAATTCAAGAGACA 59.452 45.455 0.00 0.00 0.00 3.41
495 496 2.548057 TGTGCGTGGAAATTCAAGAGAC 59.452 45.455 0.00 0.00 0.00 3.36
496 497 2.548057 GTGTGCGTGGAAATTCAAGAGA 59.452 45.455 0.00 0.00 0.00 3.10
497 498 2.290367 TGTGTGCGTGGAAATTCAAGAG 59.710 45.455 0.00 0.00 0.00 2.85
498 499 2.293170 TGTGTGCGTGGAAATTCAAGA 58.707 42.857 0.00 0.00 0.00 3.02
499 500 2.772568 TGTGTGCGTGGAAATTCAAG 57.227 45.000 0.00 0.00 0.00 3.02
500 501 2.861750 GCATGTGTGCGTGGAAATTCAA 60.862 45.455 0.00 0.00 42.28 2.69
501 502 1.335780 GCATGTGTGCGTGGAAATTCA 60.336 47.619 0.00 0.00 42.28 2.57
502 503 1.339711 GCATGTGTGCGTGGAAATTC 58.660 50.000 0.00 0.00 42.28 2.17
503 504 3.495124 GCATGTGTGCGTGGAAATT 57.505 47.368 0.00 0.00 42.28 1.82
554 556 3.536956 TTCCGTGGATGGATCAAGTAC 57.463 47.619 0.00 0.00 38.00 2.73
557 559 3.081061 TGTTTTCCGTGGATGGATCAAG 58.919 45.455 0.00 0.00 38.00 3.02
672 2496 5.188751 ACCTCCCTGTTTCTCTCTCTAAATG 59.811 44.000 0.00 0.00 0.00 2.32
691 2517 2.335316 TTCTCTCTCTAGCGACCTCC 57.665 55.000 0.00 0.00 0.00 4.30
751 2677 2.028567 CACCCTCTGTTTCTCACTCTCC 60.029 54.545 0.00 0.00 0.00 3.71
769 2695 2.643551 CTCTCTCTCACCTCTCTCACC 58.356 57.143 0.00 0.00 0.00 4.02
771 2697 2.505407 CTCCTCTCTCTCACCTCTCTCA 59.495 54.545 0.00 0.00 0.00 3.27
804 2751 3.801114 AAAAGGAAGTCTTTGTGTGCC 57.199 42.857 0.00 0.00 44.30 5.01
832 2782 2.507547 GTGCATGGCGGCATGTTG 60.508 61.111 41.00 26.07 46.92 3.33
833 2783 4.118995 CGTGCATGGCGGCATGTT 62.119 61.111 41.00 15.54 46.92 2.71
888 2849 6.557633 GTGGATAGGAGGGGTTTTTATAGAGA 59.442 42.308 0.00 0.00 0.00 3.10
940 2904 2.420687 GCTAGCACTGCCTGAAGGTATT 60.421 50.000 10.63 0.00 37.57 1.89
949 2913 0.616111 AGGTGTAGCTAGCACTGCCT 60.616 55.000 18.83 18.45 37.07 4.75
969 2933 3.508845 AGCTTAGGTTGCTGGAGAAAA 57.491 42.857 0.00 0.00 39.56 2.29
971 2935 2.612972 CGAAGCTTAGGTTGCTGGAGAA 60.613 50.000 0.00 0.00 41.03 2.87
974 2938 0.685097 ACGAAGCTTAGGTTGCTGGA 59.315 50.000 11.46 0.00 41.03 3.86
975 2939 2.094182 TCTACGAAGCTTAGGTTGCTGG 60.094 50.000 11.46 0.00 41.03 4.85
1304 3323 2.159599 GCGCCTGAGAAGAACAAGATTG 60.160 50.000 0.00 0.00 0.00 2.67
1311 3330 2.815647 CCGGCGCCTGAGAAGAAC 60.816 66.667 26.68 0.00 0.00 3.01
1350 3654 5.277828 GGTGTGTGTTCCAATAGTTCTTGAC 60.278 44.000 0.00 0.00 0.00 3.18
1361 3713 2.477176 GCGCAGGTGTGTGTTCCAA 61.477 57.895 0.30 0.00 36.48 3.53
1637 3995 3.393970 TTGCTGAGGGCGAGGAGG 61.394 66.667 0.00 0.00 45.43 4.30
1698 4077 0.108585 ATGTCGTTCCACTGGCACTT 59.891 50.000 0.00 0.00 0.00 3.16
1840 4237 1.852942 CACCATTGGATCGACGGTAG 58.147 55.000 10.37 0.00 0.00 3.18
1864 4279 4.680237 TCTTGCACGCCTGGTCGG 62.680 66.667 13.50 5.47 0.00 4.79
1873 4288 1.586028 CCCCCATTGTTCTTGCACG 59.414 57.895 0.00 0.00 0.00 5.34
1897 4312 2.983592 TCTGCTCGCACGACAGGA 60.984 61.111 16.77 0.00 32.19 3.86
1899 4314 3.168604 CGTCTGCTCGCACGACAG 61.169 66.667 16.11 13.08 38.32 3.51
2019 4434 6.359804 TGATAGAAAGTTGATGGAATGGGAG 58.640 40.000 0.00 0.00 0.00 4.30
2020 4435 6.325993 TGATAGAAAGTTGATGGAATGGGA 57.674 37.500 0.00 0.00 0.00 4.37
2021 4436 7.408756 TTTGATAGAAAGTTGATGGAATGGG 57.591 36.000 0.00 0.00 0.00 4.00
2022 4437 9.362539 CTTTTTGATAGAAAGTTGATGGAATGG 57.637 33.333 0.00 0.00 31.17 3.16
2073 4491 2.673368 CGGAAAAGAGACATGTAGGCAC 59.327 50.000 0.00 0.00 0.00 5.01
2079 4497 2.550208 GGTGGACGGAAAAGAGACATGT 60.550 50.000 0.00 0.00 0.00 3.21
2094 4512 3.365969 CGAGCAAAAGTATTTGGGTGGAC 60.366 47.826 3.75 0.00 40.37 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.