Multiple sequence alignment - TraesCS4A01G458700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G458700 chr4A 100.000 2477 0 0 1 2477 724018955 724016479 0.000000e+00 4575.0
1 TraesCS4A01G458700 chr7A 95.961 619 25 0 732 1350 735088588 735089206 0.000000e+00 1005.0
2 TraesCS4A01G458700 chr7A 93.396 530 34 1 1345 1873 735108392 735108921 0.000000e+00 784.0
3 TraesCS4A01G458700 chr5B 95.499 511 23 0 1158 1668 476909091 476909601 0.000000e+00 817.0
4 TraesCS4A01G458700 chr5B 96.099 487 16 1 1994 2477 598204184 598203698 0.000000e+00 791.0
5 TraesCS4A01G458700 chr5B 90.440 523 39 5 1382 1898 455763656 455763139 0.000000e+00 678.0
6 TraesCS4A01G458700 chr5B 91.932 409 26 2 941 1343 455764060 455763653 1.290000e-157 566.0
7 TraesCS4A01G458700 chr5B 96.337 273 10 0 733 1005 476908826 476909098 1.350000e-122 449.0
8 TraesCS4A01G458700 chr5B 95.985 274 11 0 1659 1932 476913090 476913363 1.750000e-121 446.0
9 TraesCS4A01G458700 chr5B 91.163 215 16 1 733 944 455764308 455764094 3.120000e-74 289.0
10 TraesCS4A01G458700 chr5B 94.737 57 2 1 1931 1986 453674367 453674311 1.220000e-13 87.9
11 TraesCS4A01G458700 chr4B 96.146 493 16 2 1988 2477 36968420 36968912 0.000000e+00 802.0
12 TraesCS4A01G458700 chr3B 96.509 487 14 2 1994 2477 85740202 85740688 0.000000e+00 802.0
13 TraesCS4A01G458700 chr3B 87.480 631 71 4 1309 1931 97549687 97549057 0.000000e+00 721.0
14 TraesCS4A01G458700 chr3B 87.059 425 42 7 1521 1932 508757535 508757111 3.730000e-128 468.0
15 TraesCS4A01G458700 chr3B 83.025 324 44 6 1546 1867 139231261 139230947 1.450000e-72 283.0
16 TraesCS4A01G458700 chr3B 91.275 149 10 2 733 879 508758613 508758466 1.500000e-47 200.0
17 TraesCS4A01G458700 chr2B 96.509 487 14 3 1994 2477 767737601 767738087 0.000000e+00 802.0
18 TraesCS4A01G458700 chr2B 95.556 495 17 4 1988 2477 126723769 126724263 0.000000e+00 787.0
19 TraesCS4A01G458700 chr2B 87.020 547 55 8 941 1484 194858047 194858580 9.800000e-169 603.0
20 TraesCS4A01G458700 chr7B 95.918 490 17 2 1991 2477 98739934 98740423 0.000000e+00 791.0
21 TraesCS4A01G458700 chr7B 96.281 484 13 2 1994 2477 551216106 551216584 0.000000e+00 789.0
22 TraesCS4A01G458700 chr6B 96.099 487 16 2 1994 2477 704633002 704633488 0.000000e+00 791.0
23 TraesCS4A01G458700 chr6B 87.273 660 78 6 80 735 35708343 35707686 0.000000e+00 749.0
24 TraesCS4A01G458700 chr6B 97.368 38 1 0 907 944 528331654 528331617 5.720000e-07 65.8
25 TraesCS4A01G458700 chr1B 96.099 487 16 3 1994 2477 602225784 602225298 0.000000e+00 791.0
26 TraesCS4A01G458700 chr1B 90.769 65 5 1 1931 1994 623736363 623736299 4.390000e-13 86.1
27 TraesCS4A01G458700 chr1B 90.769 65 5 1 1931 1994 638037857 638037793 4.390000e-13 86.1
28 TraesCS4A01G458700 chr2D 88.182 660 72 6 80 735 164271199 164271856 0.000000e+00 782.0
29 TraesCS4A01G458700 chr2D 87.405 659 79 4 80 735 103025198 103024541 0.000000e+00 754.0
30 TraesCS4A01G458700 chr2D 87.253 659 79 5 80 735 462227085 462227741 0.000000e+00 747.0
31 TraesCS4A01G458700 chr2D 87.884 553 45 11 950 1484 136466631 136467179 4.500000e-177 630.0
32 TraesCS4A01G458700 chr2D 92.105 76 3 1 1 73 164271070 164271145 1.210000e-18 104.0
33 TraesCS4A01G458700 chr2D 92.105 76 3 1 1 73 462226957 462227032 1.210000e-18 104.0
34 TraesCS4A01G458700 chr2D 91.139 79 4 1 1 76 632242903 632242825 1.210000e-18 104.0
35 TraesCS4A01G458700 chr2D 90.769 65 5 1 1931 1994 462227726 462227790 4.390000e-13 86.1
36 TraesCS4A01G458700 chr3D 87.879 660 74 6 80 735 363062071 363062728 0.000000e+00 771.0
37 TraesCS4A01G458700 chr3D 87.879 660 74 6 80 735 605571851 605571194 0.000000e+00 771.0
38 TraesCS4A01G458700 chr3D 92.105 76 3 1 1 73 363061943 363062018 1.210000e-18 104.0
39 TraesCS4A01G458700 chr3D 91.139 79 4 1 1 76 605571979 605571901 1.210000e-18 104.0
40 TraesCS4A01G458700 chr7D 87.727 660 75 6 80 735 426455857 426455200 0.000000e+00 765.0
41 TraesCS4A01G458700 chr7D 87.424 660 77 6 80 735 518097551 518096894 0.000000e+00 754.0
42 TraesCS4A01G458700 chr7D 94.737 57 2 1 1931 1986 426455215 426455159 1.220000e-13 87.9
43 TraesCS4A01G458700 chr6D 87.727 660 75 6 80 735 79099389 79098732 0.000000e+00 765.0
44 TraesCS4A01G458700 chr6D 91.139 79 4 1 1 76 79099517 79099439 1.210000e-18 104.0
45 TraesCS4A01G458700 chr2A 89.267 559 44 8 941 1484 165241335 165240778 0.000000e+00 686.0
46 TraesCS4A01G458700 chrUn 84.689 418 34 11 1521 1932 105323111 105323504 8.310000e-105 390.0
47 TraesCS4A01G458700 chrUn 89.767 215 15 3 732 944 105322239 105322448 4.060000e-68 268.0
48 TraesCS4A01G458700 chr4D 79.189 370 52 11 1565 1931 481854549 481854896 1.480000e-57 233.0
49 TraesCS4A01G458700 chr4D 90.805 87 5 1 1 84 22225598 22225684 2.010000e-21 113.0
50 TraesCS4A01G458700 chr4D 90.769 65 5 1 1931 1994 489983831 489983895 4.390000e-13 86.1
51 TraesCS4A01G458700 chr1A 89.655 87 6 1 1 84 13379609 13379695 9.370000e-20 108.0
52 TraesCS4A01G458700 chr1D 92.105 76 3 1 1 73 454152789 454152864 1.210000e-18 104.0
53 TraesCS4A01G458700 chr5A 90.769 65 5 1 1931 1994 479234446 479234382 4.390000e-13 86.1
54 TraesCS4A01G458700 chr3A 90.769 65 5 1 1931 1994 128129816 128129752 4.390000e-13 86.1
55 TraesCS4A01G458700 chr5D 89.231 65 6 1 1931 1994 124357962 124357898 2.040000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G458700 chr4A 724016479 724018955 2476 True 4575.000000 4575 100.000000 1 2477 1 chr4A.!!$R1 2476
1 TraesCS4A01G458700 chr7A 735088588 735089206 618 False 1005.000000 1005 95.961000 732 1350 1 chr7A.!!$F1 618
2 TraesCS4A01G458700 chr7A 735108392 735108921 529 False 784.000000 784 93.396000 1345 1873 1 chr7A.!!$F2 528
3 TraesCS4A01G458700 chr5B 476908826 476913363 4537 False 570.666667 817 95.940333 733 1932 3 chr5B.!!$F1 1199
4 TraesCS4A01G458700 chr5B 455763139 455764308 1169 True 511.000000 678 91.178333 733 1898 3 chr5B.!!$R3 1165
5 TraesCS4A01G458700 chr3B 97549057 97549687 630 True 721.000000 721 87.480000 1309 1931 1 chr3B.!!$R1 622
6 TraesCS4A01G458700 chr3B 508757111 508758613 1502 True 334.000000 468 89.167000 733 1932 2 chr3B.!!$R3 1199
7 TraesCS4A01G458700 chr2B 194858047 194858580 533 False 603.000000 603 87.020000 941 1484 1 chr2B.!!$F2 543
8 TraesCS4A01G458700 chr6B 35707686 35708343 657 True 749.000000 749 87.273000 80 735 1 chr6B.!!$R1 655
9 TraesCS4A01G458700 chr2D 103024541 103025198 657 True 754.000000 754 87.405000 80 735 1 chr2D.!!$R1 655
10 TraesCS4A01G458700 chr2D 136466631 136467179 548 False 630.000000 630 87.884000 950 1484 1 chr2D.!!$F1 534
11 TraesCS4A01G458700 chr2D 164271070 164271856 786 False 443.000000 782 90.143500 1 735 2 chr2D.!!$F2 734
12 TraesCS4A01G458700 chr2D 462226957 462227790 833 False 312.366667 747 90.042333 1 1994 3 chr2D.!!$F3 1993
13 TraesCS4A01G458700 chr3D 363061943 363062728 785 False 437.500000 771 89.992000 1 735 2 chr3D.!!$F1 734
14 TraesCS4A01G458700 chr3D 605571194 605571979 785 True 437.500000 771 89.509000 1 735 2 chr3D.!!$R1 734
15 TraesCS4A01G458700 chr7D 518096894 518097551 657 True 754.000000 754 87.424000 80 735 1 chr7D.!!$R1 655
16 TraesCS4A01G458700 chr7D 426455159 426455857 698 True 426.450000 765 91.232000 80 1986 2 chr7D.!!$R2 1906
17 TraesCS4A01G458700 chr6D 79098732 79099517 785 True 434.500000 765 89.433000 1 735 2 chr6D.!!$R1 734
18 TraesCS4A01G458700 chr2A 165240778 165241335 557 True 686.000000 686 89.267000 941 1484 1 chr2A.!!$R1 543
19 TraesCS4A01G458700 chrUn 105322239 105323504 1265 False 329.000000 390 87.228000 732 1932 2 chrUn.!!$F1 1200

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 532 0.106708 GGACTGGCGATAGATTGGCA 59.893 55.0 5.92 5.92 43.59 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 6598 0.038343 GTGGCACGAACCGGTACTAA 60.038 55.0 8.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.409484 AATTGTGGGTTGGGAGAGGG 59.591 55.000 0.00 0.00 0.00 4.30
73 77 7.033185 GTGAGGAAGATCTCAACTTCTTCTAC 58.967 42.308 16.31 11.08 44.80 2.59
76 80 4.379339 AGATCTCAACTTCTTCTACGCC 57.621 45.455 0.00 0.00 0.00 5.68
77 81 4.020543 AGATCTCAACTTCTTCTACGCCT 58.979 43.478 0.00 0.00 0.00 5.52
83 134 0.895530 CTTCTTCTACGCCTGTCCCA 59.104 55.000 0.00 0.00 0.00 4.37
119 171 2.409870 GCCCAAGGACATTGCTCCG 61.410 63.158 0.00 0.00 37.60 4.63
154 206 1.153353 TCCTCGCGGAAACATTTGAC 58.847 50.000 6.13 0.00 36.03 3.18
172 224 3.155167 GGTACGGGAGGCCCTCAG 61.155 72.222 13.90 8.50 42.67 3.35
188 240 1.535462 CTCAGGAAAAACGCGTGGATT 59.465 47.619 14.98 8.51 0.00 3.01
189 241 2.739913 CTCAGGAAAAACGCGTGGATTA 59.260 45.455 14.98 0.00 0.00 1.75
192 244 3.126171 CAGGAAAAACGCGTGGATTATCA 59.874 43.478 14.98 0.00 0.00 2.15
197 249 5.815964 AAAACGCGTGGATTATCAAAAAC 57.184 34.783 14.98 0.00 0.00 2.43
203 255 3.443681 CGTGGATTATCAAAAACCAGGCT 59.556 43.478 0.00 0.00 31.64 4.58
221 273 1.526575 CTGCCTGCGGTTGTTTCCAT 61.527 55.000 0.00 0.00 0.00 3.41
225 277 0.443869 CTGCGGTTGTTTCCATCGAG 59.556 55.000 0.00 0.00 0.00 4.04
230 282 2.083774 GGTTGTTTCCATCGAGCATGA 58.916 47.619 0.00 0.00 33.80 3.07
231 283 2.684881 GGTTGTTTCCATCGAGCATGAT 59.315 45.455 0.00 0.00 33.80 2.45
233 285 4.024556 GGTTGTTTCCATCGAGCATGATAG 60.025 45.833 0.00 0.00 33.80 2.08
262 314 1.425066 TCACCCTTTGGATGCTTCTGT 59.575 47.619 0.00 0.00 34.81 3.41
267 319 4.079558 ACCCTTTGGATGCTTCTGTATGAT 60.080 41.667 0.00 0.00 34.81 2.45
284 336 1.937899 TGATGTGCATCTTGATGAGCG 59.062 47.619 14.09 0.00 38.60 5.03
288 340 0.674269 TGCATCTTGATGAGCGTGCA 60.674 50.000 14.09 2.88 41.34 4.57
301 353 1.690893 AGCGTGCAGAGGATGACATAT 59.309 47.619 0.00 0.00 0.00 1.78
307 359 5.555017 GTGCAGAGGATGACATATTATGGT 58.445 41.667 8.48 0.00 33.60 3.55
309 361 6.815641 GTGCAGAGGATGACATATTATGGTAG 59.184 42.308 8.48 0.00 33.60 3.18
315 367 6.070538 AGGATGACATATTATGGTAGCACTCC 60.071 42.308 8.48 8.77 33.60 3.85
316 368 6.295859 GGATGACATATTATGGTAGCACTCCA 60.296 42.308 8.48 0.00 39.41 3.86
333 385 1.559682 TCCAACTCTGGGCATTACTCC 59.440 52.381 0.00 0.00 43.71 3.85
380 432 1.774894 TTGGGTTTGGTCCTCTCCCG 61.775 60.000 9.93 0.00 40.86 5.14
442 494 3.815401 GGTCAAGTTCTTTGCTTAGCTCA 59.185 43.478 5.60 0.00 36.70 4.26
447 499 4.061596 AGTTCTTTGCTTAGCTCACACTC 58.938 43.478 5.60 0.00 0.00 3.51
456 508 4.739137 GCTTAGCTCACACTCCAAGATAGG 60.739 50.000 0.00 0.00 0.00 2.57
465 517 4.785376 ACACTCCAAGATAGGATTTGGACT 59.215 41.667 2.00 0.00 45.87 3.85
467 519 4.164988 ACTCCAAGATAGGATTTGGACTGG 59.835 45.833 2.00 0.00 45.87 4.00
475 527 2.975489 AGGATTTGGACTGGCGATAGAT 59.025 45.455 0.00 0.00 39.76 1.98
480 532 0.106708 GGACTGGCGATAGATTGGCA 59.893 55.000 5.92 5.92 43.59 4.92
483 535 2.017049 ACTGGCGATAGATTGGCAAAC 58.983 47.619 3.01 0.42 44.87 2.93
499 552 2.224402 GCAAACCAGGTTGGCCAAATTA 60.224 45.455 22.47 0.00 42.67 1.40
535 588 2.967270 GCAGGGGAGTGCAAGAATT 58.033 52.632 0.00 0.00 43.41 2.17
562 615 2.441001 CCCATCTATTCTTCAGGTGCCT 59.559 50.000 0.00 0.00 0.00 4.75
572 625 1.334160 TCAGGTGCCTCTTCACGTTA 58.666 50.000 0.00 0.00 37.83 3.18
580 633 3.587797 CCTCTTCACGTTAAGGCTACA 57.412 47.619 9.50 0.00 0.00 2.74
587 640 7.357303 TCTTCACGTTAAGGCTACAAAATTTC 58.643 34.615 9.50 0.00 0.00 2.17
638 691 1.329906 GAAACATCTGCATGGAGCTCG 59.670 52.381 9.76 2.70 45.94 5.03
645 698 0.250252 TGCATGGAGCTCGTTTGACA 60.250 50.000 7.83 0.00 45.94 3.58
651 704 1.140816 GAGCTCGTTTGACACAGTCC 58.859 55.000 0.00 0.00 0.00 3.85
652 705 0.597637 AGCTCGTTTGACACAGTCCG 60.598 55.000 0.00 0.00 0.00 4.79
659 712 2.050836 TTGACACAGTCCGGGCATGT 62.051 55.000 15.14 15.14 0.00 3.21
701 754 2.010582 GCACCACCAACCGAAAAGCA 62.011 55.000 0.00 0.00 0.00 3.91
719 772 1.019673 CAAAGGCCTCGATCACCATG 58.980 55.000 5.23 0.00 0.00 3.66
720 773 0.620556 AAAGGCCTCGATCACCATGT 59.379 50.000 5.23 0.00 0.00 3.21
721 774 0.620556 AAGGCCTCGATCACCATGTT 59.379 50.000 5.23 0.00 0.00 2.71
722 775 0.107508 AGGCCTCGATCACCATGTTG 60.108 55.000 0.00 0.00 0.00 3.33
723 776 0.392998 GGCCTCGATCACCATGTTGT 60.393 55.000 0.00 0.00 0.00 3.32
724 777 0.729116 GCCTCGATCACCATGTTGTG 59.271 55.000 0.00 0.00 37.59 3.33
725 778 1.945819 GCCTCGATCACCATGTTGTGT 60.946 52.381 2.58 0.00 37.51 3.72
726 779 2.002586 CCTCGATCACCATGTTGTGTC 58.997 52.381 2.58 0.00 37.51 3.67
727 780 1.655597 CTCGATCACCATGTTGTGTCG 59.344 52.381 12.08 12.08 39.19 4.35
728 781 1.000394 TCGATCACCATGTTGTGTCGT 60.000 47.619 15.72 1.15 39.05 4.34
729 782 1.126662 CGATCACCATGTTGTGTCGTG 59.873 52.381 10.76 2.26 36.23 4.35
730 783 1.464608 GATCACCATGTTGTGTCGTGG 59.535 52.381 3.75 3.75 46.51 4.94
757 810 2.698797 GCTGCAGGTGGGACTATAGTTA 59.301 50.000 17.12 0.00 0.00 2.24
804 859 4.003648 GTCCCAACACAGTTTGATAGAGG 58.996 47.826 0.00 0.00 0.00 3.69
1131 1341 1.194781 ACCTCCACTTCCATGACGCT 61.195 55.000 0.00 0.00 0.00 5.07
1143 1362 4.104417 GACGCTGACGACGAGGCT 62.104 66.667 0.00 0.00 43.93 4.58
1149 1368 0.038159 CTGACGACGAGGCTCCTTTT 60.038 55.000 9.32 0.00 0.00 2.27
1412 2069 4.148825 GAGGTCGATGCCGGCAGT 62.149 66.667 35.36 22.24 43.23 4.40
1423 2083 2.743538 CGGCAGTAGCAGCAGCAA 60.744 61.111 3.17 0.00 45.49 3.91
1475 2264 1.381191 TGAGCGCCATGAGGTCCTA 60.381 57.895 2.29 0.00 37.19 2.94
1511 2466 1.667756 CCGTGAGAATTCAACGGACGA 60.668 52.381 32.87 2.38 44.01 4.20
1519 2479 5.475719 AGAATTCAACGGACGAATCAGTAA 58.524 37.500 8.44 0.00 32.42 2.24
1814 6293 0.404040 TTTGGCTTCCAACGGGATCT 59.596 50.000 0.00 0.00 43.82 2.75
1932 6414 0.323178 CCATCTCCACTTGCAGCCTT 60.323 55.000 0.00 0.00 0.00 4.35
1961 6443 5.420104 GTGGGTCATTTGGAATGAGAGAAAT 59.580 40.000 3.74 0.00 0.00 2.17
1973 6455 6.372659 GGAATGAGAGAAATGCAAGAGTGTTA 59.627 38.462 0.00 0.00 0.00 2.41
1988 6470 2.093973 AGTGTTACAGCATAAGAGCGCT 60.094 45.455 11.27 11.27 39.66 5.92
1994 6476 1.045350 AGCATAAGAGCGCTCCTCCA 61.045 55.000 32.94 16.25 41.74 3.86
1995 6477 0.878086 GCATAAGAGCGCTCCTCCAC 60.878 60.000 32.94 16.83 41.74 4.02
1996 6478 0.749649 CATAAGAGCGCTCCTCCACT 59.250 55.000 32.94 11.52 41.74 4.00
1997 6479 1.957177 CATAAGAGCGCTCCTCCACTA 59.043 52.381 32.94 15.05 41.74 2.74
1998 6480 1.681538 TAAGAGCGCTCCTCCACTAG 58.318 55.000 32.94 0.00 41.74 2.57
1999 6481 0.323908 AAGAGCGCTCCTCCACTAGT 60.324 55.000 32.94 9.10 41.74 2.57
2000 6482 0.547075 AGAGCGCTCCTCCACTAGTA 59.453 55.000 32.94 0.00 41.74 1.82
2001 6483 0.948678 GAGCGCTCCTCCACTAGTAG 59.051 60.000 27.22 0.00 34.35 2.57
2002 6484 0.547075 AGCGCTCCTCCACTAGTAGA 59.453 55.000 2.64 0.00 0.00 2.59
2003 6485 1.064611 AGCGCTCCTCCACTAGTAGAA 60.065 52.381 2.64 0.00 0.00 2.10
2004 6486 1.749634 GCGCTCCTCCACTAGTAGAAA 59.250 52.381 3.59 0.00 0.00 2.52
2005 6487 2.165845 GCGCTCCTCCACTAGTAGAAAA 59.834 50.000 3.59 0.00 0.00 2.29
2006 6488 3.368116 GCGCTCCTCCACTAGTAGAAAAA 60.368 47.826 3.59 0.00 0.00 1.94
2035 6517 1.548719 TGTGAGACACATTAGTCCCGG 59.451 52.381 0.00 0.00 39.62 5.73
2036 6518 1.549170 GTGAGACACATTAGTCCCGGT 59.451 52.381 0.00 0.00 39.34 5.28
2037 6519 2.028385 GTGAGACACATTAGTCCCGGTT 60.028 50.000 0.00 0.00 39.34 4.44
2038 6520 2.232941 TGAGACACATTAGTCCCGGTTC 59.767 50.000 0.00 0.00 39.34 3.62
2039 6521 1.203994 AGACACATTAGTCCCGGTTCG 59.796 52.381 0.00 0.00 39.34 3.95
2040 6522 1.203052 GACACATTAGTCCCGGTTCGA 59.797 52.381 0.00 0.00 32.36 3.71
2041 6523 1.829222 ACACATTAGTCCCGGTTCGAT 59.171 47.619 0.00 0.00 0.00 3.59
2042 6524 2.235402 ACACATTAGTCCCGGTTCGATT 59.765 45.455 0.00 0.00 0.00 3.34
2043 6525 3.267483 CACATTAGTCCCGGTTCGATTT 58.733 45.455 0.00 0.00 0.00 2.17
2044 6526 3.687698 CACATTAGTCCCGGTTCGATTTT 59.312 43.478 0.00 0.00 0.00 1.82
2045 6527 3.687698 ACATTAGTCCCGGTTCGATTTTG 59.312 43.478 0.00 0.00 0.00 2.44
2046 6528 2.389962 TAGTCCCGGTTCGATTTTGG 57.610 50.000 0.00 0.00 0.00 3.28
2047 6529 0.958876 AGTCCCGGTTCGATTTTGGC 60.959 55.000 0.00 0.00 0.00 4.52
2048 6530 1.676303 TCCCGGTTCGATTTTGGCC 60.676 57.895 0.00 0.00 0.00 5.36
2049 6531 2.706834 CCCGGTTCGATTTTGGCCC 61.707 63.158 0.00 0.00 0.00 5.80
2050 6532 2.483288 CGGTTCGATTTTGGCCCG 59.517 61.111 0.00 0.00 0.00 6.13
2051 6533 2.882132 GGTTCGATTTTGGCCCGG 59.118 61.111 0.00 0.00 0.00 5.73
2052 6534 1.974875 GGTTCGATTTTGGCCCGGT 60.975 57.895 0.00 0.00 0.00 5.28
2053 6535 0.677414 GGTTCGATTTTGGCCCGGTA 60.677 55.000 0.00 0.00 0.00 4.02
2054 6536 0.448990 GTTCGATTTTGGCCCGGTAC 59.551 55.000 0.00 0.00 0.00 3.34
2055 6537 0.325602 TTCGATTTTGGCCCGGTACT 59.674 50.000 0.00 0.00 0.00 2.73
2056 6538 1.193323 TCGATTTTGGCCCGGTACTA 58.807 50.000 0.00 0.00 0.00 1.82
2057 6539 1.554160 TCGATTTTGGCCCGGTACTAA 59.446 47.619 0.00 0.00 0.00 2.24
2058 6540 2.171027 TCGATTTTGGCCCGGTACTAAT 59.829 45.455 0.00 0.00 0.00 1.73
2059 6541 2.289547 CGATTTTGGCCCGGTACTAATG 59.710 50.000 0.00 0.00 0.00 1.90
2060 6542 2.131776 TTTTGGCCCGGTACTAATGG 57.868 50.000 0.00 0.00 0.00 3.16
2061 6543 0.993470 TTTGGCCCGGTACTAATGGT 59.007 50.000 0.00 0.00 0.00 3.55
2062 6544 1.876849 TTGGCCCGGTACTAATGGTA 58.123 50.000 0.00 0.00 0.00 3.25
2063 6545 2.106187 TGGCCCGGTACTAATGGTAT 57.894 50.000 0.00 0.00 32.56 2.73
2064 6546 1.972795 TGGCCCGGTACTAATGGTATC 59.027 52.381 0.00 0.00 32.56 2.24
2065 6547 1.972795 GGCCCGGTACTAATGGTATCA 59.027 52.381 0.00 0.00 31.28 2.15
2066 6548 2.570302 GGCCCGGTACTAATGGTATCAT 59.430 50.000 0.00 0.00 31.28 2.45
2067 6549 3.008704 GGCCCGGTACTAATGGTATCATT 59.991 47.826 6.44 6.44 44.87 2.57
2068 6550 4.223477 GGCCCGGTACTAATGGTATCATTA 59.777 45.833 8.15 8.15 42.90 1.90
2079 6561 4.572985 TGGTATCATTAGTACCGGTTCG 57.427 45.455 15.04 0.00 43.65 3.95
2080 6562 4.206375 TGGTATCATTAGTACCGGTTCGA 58.794 43.478 15.04 0.00 43.65 3.71
2081 6563 4.644234 TGGTATCATTAGTACCGGTTCGAA 59.356 41.667 15.04 11.41 43.65 3.71
2082 6564 4.978580 GGTATCATTAGTACCGGTTCGAAC 59.021 45.833 20.14 20.14 32.94 3.95
2083 6565 3.135414 TCATTAGTACCGGTTCGAACG 57.865 47.619 21.34 15.88 0.00 3.95
2089 6571 3.700961 CCGGTTCGAACGGCTATG 58.299 61.111 25.58 11.66 45.34 2.23
2090 6572 2.522638 CCGGTTCGAACGGCTATGC 61.523 63.158 25.58 8.97 45.34 3.14
2091 6573 1.807981 CGGTTCGAACGGCTATGCA 60.808 57.895 21.34 0.00 0.00 3.96
2092 6574 1.151777 CGGTTCGAACGGCTATGCAT 61.152 55.000 21.34 3.79 0.00 3.96
2093 6575 1.014352 GGTTCGAACGGCTATGCATT 58.986 50.000 21.34 0.00 0.00 3.56
2094 6576 2.206750 GGTTCGAACGGCTATGCATTA 58.793 47.619 21.34 0.00 0.00 1.90
2095 6577 2.221055 GGTTCGAACGGCTATGCATTAG 59.779 50.000 21.34 1.51 0.00 1.73
2096 6578 2.864343 GTTCGAACGGCTATGCATTAGT 59.136 45.455 13.36 0.00 0.00 2.24
2097 6579 2.469826 TCGAACGGCTATGCATTAGTG 58.530 47.619 3.54 0.00 0.00 2.74
2106 6588 3.884900 GCATTAGTGCCGGTTCGT 58.115 55.556 1.90 0.00 45.76 3.85
2107 6589 1.423845 GCATTAGTGCCGGTTCGTG 59.576 57.895 1.90 0.00 45.76 4.35
2108 6590 1.296056 GCATTAGTGCCGGTTCGTGT 61.296 55.000 1.90 0.00 45.76 4.49
2109 6591 1.153353 CATTAGTGCCGGTTCGTGTT 58.847 50.000 1.90 0.00 0.00 3.32
2110 6592 1.533731 CATTAGTGCCGGTTCGTGTTT 59.466 47.619 1.90 0.00 0.00 2.83
2111 6593 2.522836 TTAGTGCCGGTTCGTGTTTA 57.477 45.000 1.90 0.00 0.00 2.01
2112 6594 2.522836 TAGTGCCGGTTCGTGTTTAA 57.477 45.000 1.90 0.00 0.00 1.52
2113 6595 0.939419 AGTGCCGGTTCGTGTTTAAC 59.061 50.000 1.90 0.00 0.00 2.01
2114 6596 0.041047 GTGCCGGTTCGTGTTTAACC 60.041 55.000 1.90 0.00 42.52 2.85
2115 6597 0.179051 TGCCGGTTCGTGTTTAACCT 60.179 50.000 1.90 0.00 43.55 3.50
2116 6598 0.946528 GCCGGTTCGTGTTTAACCTT 59.053 50.000 1.90 0.00 43.55 3.50
2117 6599 1.334556 GCCGGTTCGTGTTTAACCTTT 59.665 47.619 1.90 0.00 43.55 3.11
2118 6600 2.547634 GCCGGTTCGTGTTTAACCTTTA 59.452 45.455 1.90 0.00 43.55 1.85
2119 6601 3.364267 GCCGGTTCGTGTTTAACCTTTAG 60.364 47.826 1.90 0.00 43.55 1.85
2120 6602 3.809279 CCGGTTCGTGTTTAACCTTTAGT 59.191 43.478 0.00 0.00 43.55 2.24
2121 6603 4.987912 CCGGTTCGTGTTTAACCTTTAGTA 59.012 41.667 0.00 0.00 43.55 1.82
2122 6604 5.107491 CCGGTTCGTGTTTAACCTTTAGTAC 60.107 44.000 0.00 0.00 43.55 2.73
2123 6605 5.107491 CGGTTCGTGTTTAACCTTTAGTACC 60.107 44.000 0.00 0.00 43.55 3.34
2124 6606 5.107491 GGTTCGTGTTTAACCTTTAGTACCG 60.107 44.000 0.00 0.00 42.63 4.02
2125 6607 4.555262 TCGTGTTTAACCTTTAGTACCGG 58.445 43.478 0.00 0.00 0.00 5.28
2126 6608 4.038642 TCGTGTTTAACCTTTAGTACCGGT 59.961 41.667 13.98 13.98 0.00 5.28
2127 6609 4.749598 CGTGTTTAACCTTTAGTACCGGTT 59.250 41.667 15.04 0.00 43.10 4.44
2128 6610 5.107491 CGTGTTTAACCTTTAGTACCGGTTC 60.107 44.000 15.04 8.12 41.09 3.62
2129 6611 4.987912 TGTTTAACCTTTAGTACCGGTTCG 59.012 41.667 15.04 0.00 41.09 3.95
2130 6612 4.864704 TTAACCTTTAGTACCGGTTCGT 57.135 40.909 15.04 0.00 41.09 3.85
2131 6613 2.730550 ACCTTTAGTACCGGTTCGTG 57.269 50.000 15.04 0.51 0.00 4.35
2132 6614 1.337167 ACCTTTAGTACCGGTTCGTGC 60.337 52.381 15.04 0.00 0.00 5.34
2133 6615 1.353076 CTTTAGTACCGGTTCGTGCC 58.647 55.000 15.04 0.00 0.00 5.01
2134 6616 0.678395 TTTAGTACCGGTTCGTGCCA 59.322 50.000 15.04 0.00 0.00 4.92
2135 6617 0.038343 TTAGTACCGGTTCGTGCCAC 60.038 55.000 15.04 1.99 0.00 5.01
2136 6618 2.198906 TAGTACCGGTTCGTGCCACG 62.199 60.000 15.04 11.80 44.19 4.94
2145 6627 3.107661 CGTGCCACGAACCGGTAC 61.108 66.667 12.85 0.00 46.05 3.34
2146 6628 2.341176 GTGCCACGAACCGGTACT 59.659 61.111 8.00 0.00 36.33 2.73
2147 6629 1.586028 GTGCCACGAACCGGTACTA 59.414 57.895 8.00 0.00 36.33 1.82
2148 6630 0.038343 GTGCCACGAACCGGTACTAA 60.038 55.000 8.00 0.00 36.33 2.24
2149 6631 0.678395 TGCCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
2150 6632 1.337074 TGCCACGAACCGGTACTAAAG 60.337 52.381 8.00 0.00 0.00 1.85
2151 6633 2.000429 CCACGAACCGGTACTAAAGG 58.000 55.000 8.00 1.40 0.00 3.11
2152 6634 1.404583 CCACGAACCGGTACTAAAGGG 60.405 57.143 8.00 0.00 0.00 3.95
2153 6635 1.545582 CACGAACCGGTACTAAAGGGA 59.454 52.381 8.00 0.00 0.00 4.20
2154 6636 2.167075 CACGAACCGGTACTAAAGGGAT 59.833 50.000 8.00 0.00 0.00 3.85
2155 6637 2.167075 ACGAACCGGTACTAAAGGGATG 59.833 50.000 8.00 0.00 0.00 3.51
2156 6638 2.482490 CGAACCGGTACTAAAGGGATGG 60.482 54.545 8.00 0.00 0.00 3.51
2157 6639 2.259014 ACCGGTACTAAAGGGATGGT 57.741 50.000 4.49 0.00 0.00 3.55
2158 6640 1.835531 ACCGGTACTAAAGGGATGGTG 59.164 52.381 4.49 0.00 0.00 4.17
2159 6641 1.140252 CCGGTACTAAAGGGATGGTGG 59.860 57.143 0.00 0.00 0.00 4.61
2160 6642 1.474498 CGGTACTAAAGGGATGGTGGC 60.474 57.143 0.00 0.00 0.00 5.01
2161 6643 1.562475 GGTACTAAAGGGATGGTGGCA 59.438 52.381 0.00 0.00 0.00 4.92
2162 6644 2.421529 GGTACTAAAGGGATGGTGGCAG 60.422 54.545 0.00 0.00 0.00 4.85
2163 6645 0.625849 ACTAAAGGGATGGTGGCAGG 59.374 55.000 0.00 0.00 0.00 4.85
2164 6646 0.753111 CTAAAGGGATGGTGGCAGGC 60.753 60.000 0.00 0.00 0.00 4.85
2165 6647 1.214305 TAAAGGGATGGTGGCAGGCT 61.214 55.000 0.00 0.00 0.00 4.58
2166 6648 2.793317 AAAGGGATGGTGGCAGGCTG 62.793 60.000 10.94 10.94 0.00 4.85
2167 6649 4.828296 GGGATGGTGGCAGGCTGG 62.828 72.222 17.64 0.00 0.00 4.85
2198 6680 2.590092 CCCCACGAGGCCCTTTAG 59.410 66.667 0.00 0.00 0.00 1.85
2199 6681 2.298661 CCCCACGAGGCCCTTTAGT 61.299 63.158 0.00 0.00 0.00 2.24
2200 6682 1.221021 CCCACGAGGCCCTTTAGTC 59.779 63.158 0.00 0.00 0.00 2.59
2201 6683 1.221021 CCACGAGGCCCTTTAGTCC 59.779 63.158 0.00 0.00 0.00 3.85
2202 6684 1.221021 CACGAGGCCCTTTAGTCCC 59.779 63.158 0.00 0.00 0.00 4.46
2203 6685 2.356780 ACGAGGCCCTTTAGTCCCG 61.357 63.158 0.00 0.00 0.00 5.14
2204 6686 2.908796 GAGGCCCTTTAGTCCCGG 59.091 66.667 0.00 0.00 0.00 5.73
2205 6687 1.993948 GAGGCCCTTTAGTCCCGGT 60.994 63.158 0.00 0.00 0.00 5.28
2206 6688 1.540617 AGGCCCTTTAGTCCCGGTT 60.541 57.895 0.00 0.00 0.00 4.44
2207 6689 1.138228 AGGCCCTTTAGTCCCGGTTT 61.138 55.000 0.00 0.00 0.00 3.27
2208 6690 0.963856 GGCCCTTTAGTCCCGGTTTG 60.964 60.000 0.00 0.00 0.00 2.93
2209 6691 0.251033 GCCCTTTAGTCCCGGTTTGT 60.251 55.000 0.00 0.00 0.00 2.83
2210 6692 1.530323 CCCTTTAGTCCCGGTTTGTG 58.470 55.000 0.00 0.00 0.00 3.33
2211 6693 1.530323 CCTTTAGTCCCGGTTTGTGG 58.470 55.000 0.00 0.00 0.00 4.17
2212 6694 0.879090 CTTTAGTCCCGGTTTGTGGC 59.121 55.000 0.00 0.00 0.00 5.01
2213 6695 0.183014 TTTAGTCCCGGTTTGTGGCA 59.817 50.000 0.00 0.00 0.00 4.92
2214 6696 0.535553 TTAGTCCCGGTTTGTGGCAC 60.536 55.000 11.55 11.55 0.00 5.01
2215 6697 1.697082 TAGTCCCGGTTTGTGGCACA 61.697 55.000 17.96 17.96 0.00 4.57
2216 6698 2.122167 GTCCCGGTTTGTGGCACAA 61.122 57.895 28.09 28.09 44.16 3.33
2217 6699 1.379977 TCCCGGTTTGTGGCACAAA 60.380 52.632 35.03 35.03 44.91 2.83
2222 6704 4.019983 TTTGTGGCACAAACCGGT 57.980 50.000 35.03 0.00 42.55 5.28
2223 6705 3.186345 TTTGTGGCACAAACCGGTA 57.814 47.368 35.03 17.48 42.55 4.02
2224 6706 0.739561 TTTGTGGCACAAACCGGTAC 59.260 50.000 35.03 0.00 42.55 3.34
2225 6707 0.107116 TTGTGGCACAAACCGGTACT 60.107 50.000 29.45 0.00 44.16 2.73
2226 6708 0.757512 TGTGGCACAAACCGGTACTA 59.242 50.000 19.74 0.00 44.16 1.82
2227 6709 1.140452 TGTGGCACAAACCGGTACTAA 59.860 47.619 19.74 0.00 44.16 2.24
2228 6710 2.220313 GTGGCACAAACCGGTACTAAA 58.780 47.619 8.00 0.00 44.16 1.85
2229 6711 2.224784 GTGGCACAAACCGGTACTAAAG 59.775 50.000 8.00 0.00 44.16 1.85
2230 6712 1.808343 GGCACAAACCGGTACTAAAGG 59.192 52.381 8.00 0.00 0.00 3.11
2231 6713 1.808343 GCACAAACCGGTACTAAAGGG 59.192 52.381 8.00 0.00 0.00 3.95
2232 6714 1.808343 CACAAACCGGTACTAAAGGGC 59.192 52.381 8.00 0.00 0.00 5.19
2233 6715 1.271543 ACAAACCGGTACTAAAGGGCC 60.272 52.381 8.00 0.00 0.00 5.80
2234 6716 1.066471 AAACCGGTACTAAAGGGCCA 58.934 50.000 8.00 0.00 0.00 5.36
2235 6717 1.066471 AACCGGTACTAAAGGGCCAA 58.934 50.000 8.00 0.00 0.00 4.52
2236 6718 0.325933 ACCGGTACTAAAGGGCCAAC 59.674 55.000 4.49 0.00 0.00 3.77
2237 6719 0.393402 CCGGTACTAAAGGGCCAACC 60.393 60.000 6.18 2.19 40.67 3.77
2247 6729 3.164026 GGGCCAACCTTTAGTACCG 57.836 57.895 4.39 0.00 35.85 4.02
2248 6730 0.393402 GGGCCAACCTTTAGTACCGG 60.393 60.000 4.39 0.00 35.85 5.28
2249 6731 0.325933 GGCCAACCTTTAGTACCGGT 59.674 55.000 13.98 13.98 0.00 5.28
2250 6732 1.271543 GGCCAACCTTTAGTACCGGTT 60.272 52.381 15.04 0.00 41.47 4.44
2251 6733 2.079158 GCCAACCTTTAGTACCGGTTC 58.921 52.381 15.04 8.12 38.90 3.62
2252 6734 2.340337 CCAACCTTTAGTACCGGTTCG 58.660 52.381 15.04 0.00 38.90 3.95
2253 6735 2.289010 CCAACCTTTAGTACCGGTTCGT 60.289 50.000 15.04 0.00 38.90 3.85
2254 6736 2.730550 ACCTTTAGTACCGGTTCGTG 57.269 50.000 15.04 0.51 0.00 4.35
2255 6737 1.337167 ACCTTTAGTACCGGTTCGTGC 60.337 52.381 15.04 0.00 0.00 5.34
2256 6738 1.353076 CTTTAGTACCGGTTCGTGCC 58.647 55.000 15.04 0.00 0.00 5.01
2257 6739 0.678395 TTTAGTACCGGTTCGTGCCA 59.322 50.000 15.04 0.00 0.00 4.92
2258 6740 0.038343 TTAGTACCGGTTCGTGCCAC 60.038 55.000 15.04 1.99 0.00 5.01
2259 6741 2.198906 TAGTACCGGTTCGTGCCACG 62.199 60.000 15.04 11.80 44.19 4.94
2272 6754 4.364817 CCACGAACCGGCACTAAA 57.635 55.556 0.00 0.00 0.00 1.85
2273 6755 2.159181 CCACGAACCGGCACTAAAG 58.841 57.895 0.00 0.00 0.00 1.85
2274 6756 1.296056 CCACGAACCGGCACTAAAGG 61.296 60.000 0.00 0.00 0.00 3.11
2275 6757 1.004200 ACGAACCGGCACTAAAGGG 60.004 57.895 0.00 0.00 0.00 3.95
2276 6758 1.743995 CGAACCGGCACTAAAGGGG 60.744 63.158 0.00 0.00 0.00 4.79
2277 6759 1.377612 GAACCGGCACTAAAGGGGT 59.622 57.895 0.00 0.00 0.00 4.95
2278 6760 0.675837 GAACCGGCACTAAAGGGGTC 60.676 60.000 0.00 0.00 0.00 4.46
2279 6761 1.131928 AACCGGCACTAAAGGGGTCT 61.132 55.000 0.00 0.00 0.00 3.85
2280 6762 0.252375 ACCGGCACTAAAGGGGTCTA 60.252 55.000 0.00 0.00 0.00 2.59
2281 6763 0.906775 CCGGCACTAAAGGGGTCTAA 59.093 55.000 0.00 0.00 0.00 2.10
2282 6764 1.406477 CCGGCACTAAAGGGGTCTAAC 60.406 57.143 0.00 0.00 0.00 2.34
2283 6765 1.406477 CGGCACTAAAGGGGTCTAACC 60.406 57.143 0.00 0.00 37.60 2.85
2284 6766 1.914108 GGCACTAAAGGGGTCTAACCT 59.086 52.381 0.00 0.00 38.64 3.50
2285 6767 3.109928 GGCACTAAAGGGGTCTAACCTA 58.890 50.000 0.00 0.00 38.64 3.08
2286 6768 3.715315 GGCACTAAAGGGGTCTAACCTAT 59.285 47.826 0.00 0.00 38.64 2.57
2287 6769 4.903649 GGCACTAAAGGGGTCTAACCTATA 59.096 45.833 0.00 0.00 38.64 1.31
2288 6770 5.011840 GGCACTAAAGGGGTCTAACCTATAG 59.988 48.000 0.00 0.00 38.64 1.31
2289 6771 5.601729 GCACTAAAGGGGTCTAACCTATAGT 59.398 44.000 0.00 0.00 38.64 2.12
2290 6772 6.239261 GCACTAAAGGGGTCTAACCTATAGTC 60.239 46.154 0.00 0.00 38.64 2.59
2291 6773 6.267242 CACTAAAGGGGTCTAACCTATAGTCC 59.733 46.154 0.00 0.00 38.64 3.85
2292 6774 3.919304 AGGGGTCTAACCTATAGTCCC 57.081 52.381 8.69 8.69 40.63 4.46
2293 6775 2.109657 AGGGGTCTAACCTATAGTCCCG 59.890 54.545 10.36 0.00 41.74 5.14
2294 6776 2.523245 GGGTCTAACCTATAGTCCCGG 58.477 57.143 0.00 0.00 38.64 5.73
2295 6777 2.158400 GGGTCTAACCTATAGTCCCGGT 60.158 54.545 0.00 0.00 38.64 5.28
2296 6778 3.570540 GGTCTAACCTATAGTCCCGGTT 58.429 50.000 0.00 0.00 43.10 4.44
2297 6779 3.320256 GGTCTAACCTATAGTCCCGGTTG 59.680 52.174 0.00 0.00 40.94 3.77
2298 6780 3.320256 GTCTAACCTATAGTCCCGGTTGG 59.680 52.174 0.00 0.00 40.94 3.77
2299 6781 2.555732 AACCTATAGTCCCGGTTGGA 57.444 50.000 0.00 0.00 39.43 3.53
2300 6782 2.083628 ACCTATAGTCCCGGTTGGAG 57.916 55.000 0.00 0.00 46.38 3.86
2301 6783 1.572415 ACCTATAGTCCCGGTTGGAGA 59.428 52.381 0.00 0.00 46.38 3.71
2302 6784 1.962100 CCTATAGTCCCGGTTGGAGAC 59.038 57.143 0.00 0.00 46.38 3.36
2303 6785 2.662866 CTATAGTCCCGGTTGGAGACA 58.337 52.381 9.96 0.00 46.38 3.41
2304 6786 1.192428 ATAGTCCCGGTTGGAGACAC 58.808 55.000 9.96 0.00 46.38 3.67
2305 6787 0.178955 TAGTCCCGGTTGGAGACACA 60.179 55.000 9.96 0.00 46.38 3.72
2306 6788 1.052124 AGTCCCGGTTGGAGACACAA 61.052 55.000 9.96 0.00 46.38 3.33
2307 6789 0.179040 GTCCCGGTTGGAGACACAAA 60.179 55.000 0.00 0.00 46.38 2.83
2308 6790 0.179040 TCCCGGTTGGAGACACAAAC 60.179 55.000 0.00 0.00 42.67 2.93
2309 6791 1.170290 CCCGGTTGGAGACACAAACC 61.170 60.000 0.00 0.00 42.67 3.27
2310 6792 1.503818 CCGGTTGGAGACACAAACCG 61.504 60.000 20.93 20.93 42.67 4.44
2311 6793 1.503818 CGGTTGGAGACACAAACCGG 61.504 60.000 20.33 0.00 42.67 5.28
2312 6794 1.170290 GGTTGGAGACACAAACCGGG 61.170 60.000 6.32 0.00 42.67 5.73
2313 6795 0.179040 GTTGGAGACACAAACCGGGA 60.179 55.000 6.32 0.00 42.67 5.14
2314 6796 0.179040 TTGGAGACACAAACCGGGAC 60.179 55.000 6.32 0.00 42.67 4.46
2315 6797 1.052124 TGGAGACACAAACCGGGACT 61.052 55.000 6.32 0.00 33.40 3.85
2316 6798 0.971386 GGAGACACAAACCGGGACTA 59.029 55.000 6.32 0.00 0.00 2.59
2317 6799 1.553704 GGAGACACAAACCGGGACTAT 59.446 52.381 6.32 0.00 0.00 2.12
2318 6800 2.762327 GGAGACACAAACCGGGACTATA 59.238 50.000 6.32 0.00 0.00 1.31
2319 6801 3.181478 GGAGACACAAACCGGGACTATAG 60.181 52.174 6.32 0.00 0.00 1.31
2320 6802 2.764572 AGACACAAACCGGGACTATAGG 59.235 50.000 6.32 0.00 0.00 2.57
2321 6803 1.835531 ACACAAACCGGGACTATAGGG 59.164 52.381 6.32 0.00 0.00 3.53
2322 6804 0.835276 ACAAACCGGGACTATAGGGC 59.165 55.000 6.32 0.00 0.00 5.19
2323 6805 0.834612 CAAACCGGGACTATAGGGCA 59.165 55.000 6.32 0.00 0.00 5.36
2324 6806 1.210967 CAAACCGGGACTATAGGGCAA 59.789 52.381 6.32 0.00 0.00 4.52
2325 6807 1.815757 AACCGGGACTATAGGGCAAT 58.184 50.000 6.32 0.00 0.00 3.56
2326 6808 1.815757 ACCGGGACTATAGGGCAATT 58.184 50.000 6.32 0.00 0.00 2.32
2327 6809 2.132686 ACCGGGACTATAGGGCAATTT 58.867 47.619 6.32 0.00 0.00 1.82
2328 6810 2.512476 ACCGGGACTATAGGGCAATTTT 59.488 45.455 6.32 0.00 0.00 1.82
2329 6811 3.146847 CCGGGACTATAGGGCAATTTTC 58.853 50.000 4.43 0.00 0.00 2.29
2330 6812 3.434453 CCGGGACTATAGGGCAATTTTCA 60.434 47.826 4.43 0.00 0.00 2.69
2331 6813 4.204012 CGGGACTATAGGGCAATTTTCAA 58.796 43.478 4.43 0.00 0.00 2.69
2332 6814 4.642885 CGGGACTATAGGGCAATTTTCAAA 59.357 41.667 4.43 0.00 0.00 2.69
2333 6815 5.449999 CGGGACTATAGGGCAATTTTCAAAC 60.450 44.000 4.43 0.00 0.00 2.93
2334 6816 5.656859 GGGACTATAGGGCAATTTTCAAACT 59.343 40.000 4.43 0.00 0.00 2.66
2335 6817 6.154534 GGGACTATAGGGCAATTTTCAAACTT 59.845 38.462 4.43 0.00 0.00 2.66
2336 6818 7.035612 GGACTATAGGGCAATTTTCAAACTTG 58.964 38.462 4.43 0.00 0.00 3.16
2337 6819 7.093945 GGACTATAGGGCAATTTTCAAACTTGA 60.094 37.037 4.46 0.00 34.92 3.02
2338 6820 8.189119 ACTATAGGGCAATTTTCAAACTTGAA 57.811 30.769 4.46 0.69 44.78 2.69
2416 6898 4.797471 TGCAGAACAAAAAGATTGATCCG 58.203 39.130 0.00 0.00 0.00 4.18
2417 6899 3.609807 GCAGAACAAAAAGATTGATCCGC 59.390 43.478 0.00 0.00 0.00 5.54
2418 6900 4.616835 GCAGAACAAAAAGATTGATCCGCT 60.617 41.667 0.00 0.00 0.00 5.52
2419 6901 5.391950 GCAGAACAAAAAGATTGATCCGCTA 60.392 40.000 0.00 0.00 0.00 4.26
2420 6902 6.611381 CAGAACAAAAAGATTGATCCGCTAA 58.389 36.000 0.00 0.00 0.00 3.09
2421 6903 7.253422 CAGAACAAAAAGATTGATCCGCTAAT 58.747 34.615 0.00 0.00 0.00 1.73
2422 6904 8.397906 CAGAACAAAAAGATTGATCCGCTAATA 58.602 33.333 0.00 0.00 0.00 0.98
2423 6905 8.398665 AGAACAAAAAGATTGATCCGCTAATAC 58.601 33.333 0.00 0.00 0.00 1.89
2424 6906 7.624360 ACAAAAAGATTGATCCGCTAATACA 57.376 32.000 0.00 0.00 0.00 2.29
2425 6907 8.050778 ACAAAAAGATTGATCCGCTAATACAA 57.949 30.769 0.00 0.00 0.00 2.41
2426 6908 8.184192 ACAAAAAGATTGATCCGCTAATACAAG 58.816 33.333 0.00 0.00 0.00 3.16
2427 6909 7.865706 AAAAGATTGATCCGCTAATACAAGT 57.134 32.000 0.00 0.00 0.00 3.16
2428 6910 7.865706 AAAGATTGATCCGCTAATACAAGTT 57.134 32.000 0.00 0.00 0.00 2.66
2429 6911 7.865706 AAGATTGATCCGCTAATACAAGTTT 57.134 32.000 0.00 0.00 0.00 2.66
2430 6912 7.865706 AGATTGATCCGCTAATACAAGTTTT 57.134 32.000 0.00 0.00 0.00 2.43
2431 6913 7.920738 AGATTGATCCGCTAATACAAGTTTTC 58.079 34.615 0.00 0.00 0.00 2.29
2432 6914 6.431198 TTGATCCGCTAATACAAGTTTTCC 57.569 37.500 0.00 0.00 0.00 3.13
2433 6915 5.492895 TGATCCGCTAATACAAGTTTTCCA 58.507 37.500 0.00 0.00 0.00 3.53
2434 6916 6.119536 TGATCCGCTAATACAAGTTTTCCAT 58.880 36.000 0.00 0.00 0.00 3.41
2435 6917 6.601613 TGATCCGCTAATACAAGTTTTCCATT 59.398 34.615 0.00 0.00 0.00 3.16
2436 6918 6.827586 TCCGCTAATACAAGTTTTCCATTT 57.172 33.333 0.00 0.00 0.00 2.32
2437 6919 6.848451 TCCGCTAATACAAGTTTTCCATTTC 58.152 36.000 0.00 0.00 0.00 2.17
2438 6920 5.737290 CCGCTAATACAAGTTTTCCATTTCG 59.263 40.000 0.00 0.00 0.00 3.46
2439 6921 6.402766 CCGCTAATACAAGTTTTCCATTTCGA 60.403 38.462 0.00 0.00 0.00 3.71
2440 6922 6.464834 CGCTAATACAAGTTTTCCATTTCGAC 59.535 38.462 0.00 0.00 0.00 4.20
2441 6923 6.464834 GCTAATACAAGTTTTCCATTTCGACG 59.535 38.462 0.00 0.00 0.00 5.12
2442 6924 6.548441 AATACAAGTTTTCCATTTCGACGA 57.452 33.333 0.00 0.00 0.00 4.20
2443 6925 6.737254 ATACAAGTTTTCCATTTCGACGAT 57.263 33.333 0.00 0.00 0.00 3.73
2444 6926 5.432885 ACAAGTTTTCCATTTCGACGATT 57.567 34.783 0.00 0.00 0.00 3.34
2445 6927 5.827666 ACAAGTTTTCCATTTCGACGATTT 58.172 33.333 0.00 0.00 0.00 2.17
2446 6928 6.270064 ACAAGTTTTCCATTTCGACGATTTT 58.730 32.000 0.00 0.00 0.00 1.82
2447 6929 6.754675 ACAAGTTTTCCATTTCGACGATTTTT 59.245 30.769 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.443037 CACAATTTTGTTGGCTCGTTCA 58.557 40.909 0.00 0.00 39.91 3.18
10 11 1.068434 ACCCACAATTTTGTTGGCTCG 59.932 47.619 12.19 1.41 45.21 5.03
40 41 1.550976 AGATCTTCCTCACACGGGTTC 59.449 52.381 0.00 0.00 0.00 3.62
83 134 1.588082 CTTGCGCCAAGAAGCCAAT 59.412 52.632 4.18 0.00 43.42 3.16
137 189 0.179225 CCGTCAAATGTTTCCGCGAG 60.179 55.000 8.23 0.00 0.00 5.03
172 224 3.750639 TGATAATCCACGCGTTTTTCC 57.249 42.857 10.22 0.00 0.00 3.13
188 240 2.603075 AGGCAGCCTGGTTTTTGATA 57.397 45.000 15.24 0.00 29.57 2.15
189 241 3.463045 AGGCAGCCTGGTTTTTGAT 57.537 47.368 15.24 0.00 29.57 2.57
203 255 2.124109 TGGAAACAACCGCAGGCA 60.124 55.556 0.00 0.00 46.82 4.75
221 273 5.750547 GTGAAGAATTGTCTATCATGCTCGA 59.249 40.000 0.00 0.00 32.16 4.04
225 277 5.128919 AGGGTGAAGAATTGTCTATCATGC 58.871 41.667 0.00 0.00 32.16 4.06
230 282 6.139679 TCCAAAGGGTGAAGAATTGTCTAT 57.860 37.500 0.00 0.00 31.92 1.98
231 283 5.576563 TCCAAAGGGTGAAGAATTGTCTA 57.423 39.130 0.00 0.00 31.92 2.59
233 285 4.619160 GCATCCAAAGGGTGAAGAATTGTC 60.619 45.833 0.00 0.00 34.93 3.18
262 314 3.744426 CGCTCATCAAGATGCACATCATA 59.256 43.478 12.87 0.00 40.22 2.15
267 319 1.081094 CACGCTCATCAAGATGCACA 58.919 50.000 5.19 0.00 38.65 4.57
284 336 5.555017 ACCATAATATGTCATCCTCTGCAC 58.445 41.667 0.00 0.00 0.00 4.57
288 340 6.728164 AGTGCTACCATAATATGTCATCCTCT 59.272 38.462 0.00 0.00 0.00 3.69
301 353 4.471904 CAGAGTTGGAGTGCTACCATAA 57.528 45.455 0.00 0.00 37.26 1.90
315 367 1.066143 ACGGAGTAATGCCCAGAGTTG 60.066 52.381 0.00 0.00 41.94 3.16
316 368 1.066143 CACGGAGTAATGCCCAGAGTT 60.066 52.381 0.00 0.00 41.61 3.01
333 385 1.448540 CCTGTAAGCAGAGGCCACG 60.449 63.158 5.01 0.00 45.28 4.94
402 454 2.938798 TTCGGTGGGGCCCAAGAT 60.939 61.111 30.70 0.00 34.18 2.40
403 455 3.646715 CTTCGGTGGGGCCCAAGA 61.647 66.667 30.70 26.33 34.18 3.02
437 489 3.107402 TCCTATCTTGGAGTGTGAGCT 57.893 47.619 0.00 0.00 0.00 4.09
447 499 3.217626 GCCAGTCCAAATCCTATCTTGG 58.782 50.000 0.00 0.00 43.00 3.61
456 508 3.499918 CCAATCTATCGCCAGTCCAAATC 59.500 47.826 0.00 0.00 0.00 2.17
465 517 1.340502 TGGTTTGCCAATCTATCGCCA 60.341 47.619 0.00 0.00 42.83 5.69
467 519 1.334869 CCTGGTTTGCCAATCTATCGC 59.665 52.381 0.00 0.00 45.51 4.58
475 527 3.225235 GCCAACCTGGTTTGCCAA 58.775 55.556 21.53 0.00 45.51 4.52
480 532 3.008923 CCATAATTTGGCCAACCTGGTTT 59.991 43.478 20.35 7.81 40.46 3.27
483 535 2.985957 CCATAATTTGGCCAACCTGG 57.014 50.000 20.35 17.72 39.09 4.45
499 552 1.304713 CACAAGGAGCAAGGGCCAT 60.305 57.895 6.18 0.00 42.56 4.40
535 588 4.540099 ACCTGAAGAATAGATGGGTTCCAA 59.460 41.667 0.00 0.00 36.95 3.53
562 615 6.870971 AATTTTGTAGCCTTAACGTGAAGA 57.129 33.333 14.67 0.00 0.00 2.87
587 640 8.547894 TCGTGGATGAGAAATTTATGAATAACG 58.452 33.333 0.00 0.00 0.00 3.18
620 673 0.251354 ACGAGCTCCATGCAGATGTT 59.749 50.000 8.47 0.00 45.94 2.71
629 682 1.070758 ACTGTGTCAAACGAGCTCCAT 59.929 47.619 8.47 0.00 0.00 3.41
638 691 0.889186 ATGCCCGGACTGTGTCAAAC 60.889 55.000 0.73 0.00 33.68 2.93
645 698 2.034066 CCAACATGCCCGGACTGT 59.966 61.111 0.73 0.00 0.00 3.55
659 712 4.393155 ATGCTCGTGCTCGCCCAA 62.393 61.111 11.19 0.00 40.48 4.12
701 754 0.620556 ACATGGTGATCGAGGCCTTT 59.379 50.000 6.77 0.00 0.00 3.11
719 772 2.251642 GCCTGACCCACGACACAAC 61.252 63.158 0.00 0.00 0.00 3.32
720 773 2.110213 GCCTGACCCACGACACAA 59.890 61.111 0.00 0.00 0.00 3.33
721 774 2.842462 AGCCTGACCCACGACACA 60.842 61.111 0.00 0.00 0.00 3.72
722 775 2.357517 CAGCCTGACCCACGACAC 60.358 66.667 0.00 0.00 0.00 3.67
723 776 4.314440 GCAGCCTGACCCACGACA 62.314 66.667 0.00 0.00 0.00 4.35
724 777 4.314440 TGCAGCCTGACCCACGAC 62.314 66.667 0.00 0.00 0.00 4.34
725 778 4.007644 CTGCAGCCTGACCCACGA 62.008 66.667 0.00 0.00 0.00 4.35
727 780 3.958860 ACCTGCAGCCTGACCCAC 61.959 66.667 8.66 0.00 0.00 4.61
728 781 3.957586 CACCTGCAGCCTGACCCA 61.958 66.667 8.66 0.00 0.00 4.51
729 782 4.729918 CCACCTGCAGCCTGACCC 62.730 72.222 8.66 0.00 0.00 4.46
730 783 4.729918 CCCACCTGCAGCCTGACC 62.730 72.222 8.66 0.00 0.00 4.02
757 810 1.208165 GGAATGGTGGTGGGACTCCT 61.208 60.000 0.00 0.00 43.38 3.69
935 993 5.279206 GGATCAGTACATCGAGAACATGGAT 60.279 44.000 0.00 0.00 0.00 3.41
948 1068 1.822990 ACAACGGACGGATCAGTACAT 59.177 47.619 9.01 0.00 32.42 2.29
1078 1279 1.603455 CCCTTGTGGCAACGGTGAT 60.603 57.895 3.55 0.00 42.51 3.06
1131 1341 0.319555 CAAAAGGAGCCTCGTCGTCA 60.320 55.000 0.00 0.00 0.00 4.35
1143 1362 0.032952 CGTCGGTGAGGTCAAAAGGA 59.967 55.000 0.00 0.00 0.00 3.36
1149 1368 3.733960 CTCGCGTCGGTGAGGTCA 61.734 66.667 5.77 0.00 45.10 4.02
1412 2069 1.432514 CGAGAACTTTGCTGCTGCTA 58.567 50.000 17.00 6.36 40.48 3.49
1423 2083 1.506493 CTGTTGCTCTGCGAGAACTT 58.494 50.000 9.32 0.00 0.00 2.66
1511 2466 3.495434 TGTCGGGTTGGTTTACTGATT 57.505 42.857 0.00 0.00 0.00 2.57
1519 2479 2.903350 GGCGTTGTCGGGTTGGTT 60.903 61.111 0.00 0.00 37.56 3.67
1741 6206 4.970392 CGGTGCCACAACGTACTA 57.030 55.556 0.00 0.00 39.94 1.82
1785 6264 5.530915 CCGTTGGAAGCCAAATTAGATATCA 59.469 40.000 5.32 0.00 45.73 2.15
1795 6274 0.404040 AGATCCCGTTGGAAGCCAAA 59.596 50.000 0.00 0.00 45.73 3.28
1797 6276 1.281419 TTAGATCCCGTTGGAAGCCA 58.719 50.000 0.00 0.00 45.98 4.75
1814 6293 2.642807 GGCTAGCCCACTTATCCCATTA 59.357 50.000 24.19 0.00 0.00 1.90
1932 6414 2.350057 TTCCAAATGACCCACGACAA 57.650 45.000 0.00 0.00 0.00 3.18
1961 6443 4.893608 TCTTATGCTGTAACACTCTTGCA 58.106 39.130 0.00 0.00 34.88 4.08
1973 6455 0.103937 GAGGAGCGCTCTTATGCTGT 59.896 55.000 34.46 10.89 42.60 4.40
2016 6498 1.549170 ACCGGGACTAATGTGTCTCAC 59.451 52.381 6.32 0.00 37.29 3.51
2017 6499 1.933021 ACCGGGACTAATGTGTCTCA 58.067 50.000 6.32 0.00 37.29 3.27
2018 6500 2.734492 CGAACCGGGACTAATGTGTCTC 60.734 54.545 6.32 0.00 37.16 3.36
2019 6501 1.203994 CGAACCGGGACTAATGTGTCT 59.796 52.381 6.32 0.00 37.16 3.41
2020 6502 1.203052 TCGAACCGGGACTAATGTGTC 59.797 52.381 6.32 0.00 36.31 3.67
2021 6503 1.259609 TCGAACCGGGACTAATGTGT 58.740 50.000 6.32 0.00 0.00 3.72
2022 6504 2.596904 ATCGAACCGGGACTAATGTG 57.403 50.000 6.32 0.00 0.00 3.21
2023 6505 3.622166 AAATCGAACCGGGACTAATGT 57.378 42.857 6.32 0.00 0.00 2.71
2024 6506 3.064820 CCAAAATCGAACCGGGACTAATG 59.935 47.826 6.32 0.00 0.00 1.90
2025 6507 3.275999 CCAAAATCGAACCGGGACTAAT 58.724 45.455 6.32 0.00 0.00 1.73
2026 6508 2.702261 CCAAAATCGAACCGGGACTAA 58.298 47.619 6.32 0.00 0.00 2.24
2027 6509 1.676615 GCCAAAATCGAACCGGGACTA 60.677 52.381 6.32 0.00 0.00 2.59
2028 6510 0.958876 GCCAAAATCGAACCGGGACT 60.959 55.000 6.32 0.00 0.00 3.85
2029 6511 1.504900 GCCAAAATCGAACCGGGAC 59.495 57.895 6.32 0.00 0.00 4.46
2030 6512 1.676303 GGCCAAAATCGAACCGGGA 60.676 57.895 6.32 0.00 0.00 5.14
2031 6513 2.706834 GGGCCAAAATCGAACCGGG 61.707 63.158 6.32 0.00 0.00 5.73
2032 6514 2.882132 GGGCCAAAATCGAACCGG 59.118 61.111 4.39 0.00 0.00 5.28
2033 6515 2.483288 CGGGCCAAAATCGAACCG 59.517 61.111 4.39 0.00 35.01 4.44
2034 6516 0.677414 TACCGGGCCAAAATCGAACC 60.677 55.000 6.32 0.00 0.00 3.62
2035 6517 0.448990 GTACCGGGCCAAAATCGAAC 59.551 55.000 6.32 0.00 0.00 3.95
2036 6518 0.325602 AGTACCGGGCCAAAATCGAA 59.674 50.000 6.32 0.00 0.00 3.71
2037 6519 1.193323 TAGTACCGGGCCAAAATCGA 58.807 50.000 6.32 0.00 0.00 3.59
2038 6520 2.027003 TTAGTACCGGGCCAAAATCG 57.973 50.000 6.32 0.00 0.00 3.34
2039 6521 2.621526 CCATTAGTACCGGGCCAAAATC 59.378 50.000 6.32 0.00 0.00 2.17
2040 6522 2.024751 ACCATTAGTACCGGGCCAAAAT 60.025 45.455 6.32 0.00 0.00 1.82
2041 6523 1.355043 ACCATTAGTACCGGGCCAAAA 59.645 47.619 6.32 0.00 0.00 2.44
2042 6524 0.993470 ACCATTAGTACCGGGCCAAA 59.007 50.000 6.32 0.00 0.00 3.28
2043 6525 1.876849 TACCATTAGTACCGGGCCAA 58.123 50.000 6.32 0.00 0.00 4.52
2044 6526 1.972795 GATACCATTAGTACCGGGCCA 59.027 52.381 6.32 0.00 32.46 5.36
2045 6527 1.972795 TGATACCATTAGTACCGGGCC 59.027 52.381 6.32 0.00 32.46 5.80
2046 6528 3.975168 ATGATACCATTAGTACCGGGC 57.025 47.619 6.32 0.00 32.46 6.13
2055 6537 6.489700 TCGAACCGGTACTAATGATACCATTA 59.510 38.462 8.00 0.00 42.03 1.90
2056 6538 5.302568 TCGAACCGGTACTAATGATACCATT 59.697 40.000 8.00 0.00 42.03 3.16
2057 6539 4.828939 TCGAACCGGTACTAATGATACCAT 59.171 41.667 8.00 0.00 42.03 3.55
2058 6540 4.206375 TCGAACCGGTACTAATGATACCA 58.794 43.478 8.00 0.00 42.03 3.25
2059 6541 4.836125 TCGAACCGGTACTAATGATACC 57.164 45.455 8.00 0.00 39.05 2.73
2060 6542 4.672413 CGTTCGAACCGGTACTAATGATAC 59.328 45.833 22.07 0.00 0.00 2.24
2061 6543 4.261155 CCGTTCGAACCGGTACTAATGATA 60.261 45.833 22.07 0.00 40.59 2.15
2062 6544 3.489738 CCGTTCGAACCGGTACTAATGAT 60.490 47.826 22.07 0.00 40.59 2.45
2063 6545 2.159393 CCGTTCGAACCGGTACTAATGA 60.159 50.000 22.07 0.00 40.59 2.57
2064 6546 2.187707 CCGTTCGAACCGGTACTAATG 58.812 52.381 22.07 7.72 40.59 1.90
2065 6547 2.566952 CCGTTCGAACCGGTACTAAT 57.433 50.000 22.07 0.00 40.59 1.73
2073 6555 1.151777 ATGCATAGCCGTTCGAACCG 61.152 55.000 22.07 16.66 0.00 4.44
2074 6556 1.014352 AATGCATAGCCGTTCGAACC 58.986 50.000 22.07 9.45 0.00 3.62
2075 6557 2.864343 ACTAATGCATAGCCGTTCGAAC 59.136 45.455 18.47 18.47 34.78 3.95
2076 6558 2.863740 CACTAATGCATAGCCGTTCGAA 59.136 45.455 0.00 0.00 34.78 3.71
2077 6559 2.469826 CACTAATGCATAGCCGTTCGA 58.530 47.619 0.00 0.00 34.78 3.71
2078 6560 2.930230 CACTAATGCATAGCCGTTCG 57.070 50.000 0.00 0.00 34.78 3.95
2090 6572 1.153353 AACACGAACCGGCACTAATG 58.847 50.000 0.00 0.00 0.00 1.90
2091 6573 1.886886 AAACACGAACCGGCACTAAT 58.113 45.000 0.00 0.00 0.00 1.73
2092 6574 2.522836 TAAACACGAACCGGCACTAA 57.477 45.000 0.00 0.00 0.00 2.24
2093 6575 2.134346 GTTAAACACGAACCGGCACTA 58.866 47.619 0.00 0.00 0.00 2.74
2094 6576 0.939419 GTTAAACACGAACCGGCACT 59.061 50.000 0.00 0.00 0.00 4.40
2095 6577 0.041047 GGTTAAACACGAACCGGCAC 60.041 55.000 0.00 0.00 37.22 5.01
2096 6578 2.319219 GGTTAAACACGAACCGGCA 58.681 52.632 0.00 0.00 37.22 5.69
2100 6582 5.107491 CGGTACTAAAGGTTAAACACGAACC 60.107 44.000 0.00 0.00 45.76 3.62
2101 6583 5.107491 CCGGTACTAAAGGTTAAACACGAAC 60.107 44.000 0.00 0.00 0.00 3.95
2102 6584 4.987912 CCGGTACTAAAGGTTAAACACGAA 59.012 41.667 0.00 0.00 0.00 3.85
2103 6585 4.038642 ACCGGTACTAAAGGTTAAACACGA 59.961 41.667 4.49 0.00 33.96 4.35
2104 6586 4.306600 ACCGGTACTAAAGGTTAAACACG 58.693 43.478 4.49 0.00 33.96 4.49
2112 6594 1.337167 GCACGAACCGGTACTAAAGGT 60.337 52.381 8.00 0.00 40.50 3.50
2113 6595 1.353076 GCACGAACCGGTACTAAAGG 58.647 55.000 8.00 0.00 0.00 3.11
2114 6596 1.337074 TGGCACGAACCGGTACTAAAG 60.337 52.381 8.00 0.00 0.00 1.85
2115 6597 0.678395 TGGCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
2116 6598 0.038343 GTGGCACGAACCGGTACTAA 60.038 55.000 8.00 0.00 0.00 2.24
2117 6599 1.586028 GTGGCACGAACCGGTACTA 59.414 57.895 8.00 0.00 0.00 1.82
2118 6600 2.341176 GTGGCACGAACCGGTACT 59.659 61.111 8.00 0.00 0.00 2.73
2119 6601 3.107661 CGTGGCACGAACCGGTAC 61.108 66.667 34.85 0.00 46.05 3.34
2128 6610 2.198906 TAGTACCGGTTCGTGGCACG 62.199 60.000 32.75 32.75 44.19 5.34
2129 6611 0.038343 TTAGTACCGGTTCGTGGCAC 60.038 55.000 15.04 7.79 0.00 5.01
2130 6612 0.678395 TTTAGTACCGGTTCGTGGCA 59.322 50.000 15.04 0.00 0.00 4.92
2131 6613 1.353076 CTTTAGTACCGGTTCGTGGC 58.647 55.000 15.04 0.00 0.00 5.01
2132 6614 1.404583 CCCTTTAGTACCGGTTCGTGG 60.405 57.143 15.04 9.90 0.00 4.94
2133 6615 1.545582 TCCCTTTAGTACCGGTTCGTG 59.454 52.381 15.04 0.51 0.00 4.35
2134 6616 1.923356 TCCCTTTAGTACCGGTTCGT 58.077 50.000 15.04 0.00 0.00 3.85
2135 6617 2.482490 CCATCCCTTTAGTACCGGTTCG 60.482 54.545 15.04 0.00 0.00 3.95
2136 6618 2.502947 ACCATCCCTTTAGTACCGGTTC 59.497 50.000 15.04 8.12 0.00 3.62
2137 6619 2.237893 CACCATCCCTTTAGTACCGGTT 59.762 50.000 15.04 0.00 0.00 4.44
2138 6620 1.835531 CACCATCCCTTTAGTACCGGT 59.164 52.381 13.98 13.98 0.00 5.28
2139 6621 1.140252 CCACCATCCCTTTAGTACCGG 59.860 57.143 0.00 0.00 0.00 5.28
2140 6622 1.474498 GCCACCATCCCTTTAGTACCG 60.474 57.143 0.00 0.00 0.00 4.02
2141 6623 1.562475 TGCCACCATCCCTTTAGTACC 59.438 52.381 0.00 0.00 0.00 3.34
2142 6624 2.421529 CCTGCCACCATCCCTTTAGTAC 60.422 54.545 0.00 0.00 0.00 2.73
2143 6625 1.843851 CCTGCCACCATCCCTTTAGTA 59.156 52.381 0.00 0.00 0.00 1.82
2144 6626 0.625849 CCTGCCACCATCCCTTTAGT 59.374 55.000 0.00 0.00 0.00 2.24
2145 6627 0.753111 GCCTGCCACCATCCCTTTAG 60.753 60.000 0.00 0.00 0.00 1.85
2146 6628 1.214305 AGCCTGCCACCATCCCTTTA 61.214 55.000 0.00 0.00 0.00 1.85
2147 6629 2.037847 GCCTGCCACCATCCCTTT 59.962 61.111 0.00 0.00 0.00 3.11
2148 6630 2.943265 AGCCTGCCACCATCCCTT 60.943 61.111 0.00 0.00 0.00 3.95
2149 6631 3.736224 CAGCCTGCCACCATCCCT 61.736 66.667 0.00 0.00 0.00 4.20
2150 6632 4.828296 CCAGCCTGCCACCATCCC 62.828 72.222 0.00 0.00 0.00 3.85
2181 6663 2.253403 GACTAAAGGGCCTCGTGGGG 62.253 65.000 6.46 0.00 35.12 4.96
2182 6664 1.221021 GACTAAAGGGCCTCGTGGG 59.779 63.158 6.46 0.00 38.36 4.61
2183 6665 1.221021 GGACTAAAGGGCCTCGTGG 59.779 63.158 6.46 2.27 40.87 4.94
2184 6666 1.221021 GGGACTAAAGGGCCTCGTG 59.779 63.158 6.46 1.86 44.42 4.35
2185 6667 2.356780 CGGGACTAAAGGGCCTCGT 61.357 63.158 6.46 4.39 44.42 4.18
2186 6668 2.499685 CGGGACTAAAGGGCCTCG 59.500 66.667 6.46 0.00 44.42 4.63
2187 6669 1.559965 AACCGGGACTAAAGGGCCTC 61.560 60.000 6.46 0.00 44.42 4.70
2188 6670 1.138228 AAACCGGGACTAAAGGGCCT 61.138 55.000 6.32 0.00 44.42 5.19
2189 6671 0.963856 CAAACCGGGACTAAAGGGCC 60.964 60.000 6.32 0.00 44.23 5.80
2190 6672 0.251033 ACAAACCGGGACTAAAGGGC 60.251 55.000 6.32 0.00 0.00 5.19
2191 6673 1.530323 CACAAACCGGGACTAAAGGG 58.470 55.000 6.32 0.00 0.00 3.95
2192 6674 1.530323 CCACAAACCGGGACTAAAGG 58.470 55.000 6.32 0.00 0.00 3.11
2193 6675 0.879090 GCCACAAACCGGGACTAAAG 59.121 55.000 6.32 0.00 0.00 1.85
2194 6676 0.183014 TGCCACAAACCGGGACTAAA 59.817 50.000 6.32 0.00 0.00 1.85
2195 6677 0.535553 GTGCCACAAACCGGGACTAA 60.536 55.000 6.32 0.00 41.35 2.24
2196 6678 1.071814 GTGCCACAAACCGGGACTA 59.928 57.895 6.32 0.00 41.35 2.59
2197 6679 2.203294 GTGCCACAAACCGGGACT 60.203 61.111 6.32 0.00 41.35 3.85
2198 6680 1.668101 TTTGTGCCACAAACCGGGAC 61.668 55.000 18.60 0.00 42.55 4.46
2199 6681 1.379977 TTTGTGCCACAAACCGGGA 60.380 52.632 18.60 0.00 42.55 5.14
2200 6682 3.211288 TTTGTGCCACAAACCGGG 58.789 55.556 18.60 0.00 42.55 5.73
2205 6687 0.739561 GTACCGGTTTGTGCCACAAA 59.260 50.000 18.60 18.60 44.91 2.83
2206 6688 0.107116 AGTACCGGTTTGTGCCACAA 60.107 50.000 15.04 6.08 36.11 3.33
2207 6689 0.757512 TAGTACCGGTTTGTGCCACA 59.242 50.000 15.04 0.00 0.00 4.17
2208 6690 1.881591 TTAGTACCGGTTTGTGCCAC 58.118 50.000 15.04 1.99 0.00 5.01
2209 6691 2.496111 CTTTAGTACCGGTTTGTGCCA 58.504 47.619 15.04 0.00 0.00 4.92
2210 6692 1.808343 CCTTTAGTACCGGTTTGTGCC 59.192 52.381 15.04 0.00 0.00 5.01
2211 6693 1.808343 CCCTTTAGTACCGGTTTGTGC 59.192 52.381 15.04 0.00 0.00 4.57
2212 6694 1.808343 GCCCTTTAGTACCGGTTTGTG 59.192 52.381 15.04 0.00 0.00 3.33
2213 6695 1.271543 GGCCCTTTAGTACCGGTTTGT 60.272 52.381 15.04 0.00 0.00 2.83
2214 6696 1.271488 TGGCCCTTTAGTACCGGTTTG 60.271 52.381 15.04 0.00 0.00 2.93
2215 6697 1.066471 TGGCCCTTTAGTACCGGTTT 58.934 50.000 15.04 4.12 0.00 3.27
2216 6698 1.066471 TTGGCCCTTTAGTACCGGTT 58.934 50.000 15.04 0.00 0.00 4.44
2217 6699 0.325933 GTTGGCCCTTTAGTACCGGT 59.674 55.000 13.98 13.98 0.00 5.28
2218 6700 0.393402 GGTTGGCCCTTTAGTACCGG 60.393 60.000 0.00 0.00 0.00 5.28
2219 6701 0.616891 AGGTTGGCCCTTTAGTACCG 59.383 55.000 0.00 0.00 42.73 4.02
2229 6711 0.393402 CCGGTACTAAAGGTTGGCCC 60.393 60.000 0.00 0.00 34.57 5.80
2230 6712 0.325933 ACCGGTACTAAAGGTTGGCC 59.674 55.000 4.49 0.00 33.96 5.36
2231 6713 2.189594 AACCGGTACTAAAGGTTGGC 57.810 50.000 8.00 0.00 45.53 4.52
2235 6717 1.337167 GCACGAACCGGTACTAAAGGT 60.337 52.381 8.00 0.00 40.50 3.50
2236 6718 1.353076 GCACGAACCGGTACTAAAGG 58.647 55.000 8.00 0.00 0.00 3.11
2237 6719 1.337074 TGGCACGAACCGGTACTAAAG 60.337 52.381 8.00 0.00 0.00 1.85
2238 6720 0.678395 TGGCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
2239 6721 0.038343 GTGGCACGAACCGGTACTAA 60.038 55.000 8.00 0.00 0.00 2.24
2240 6722 1.586028 GTGGCACGAACCGGTACTA 59.414 57.895 8.00 0.00 0.00 1.82
2241 6723 2.341176 GTGGCACGAACCGGTACT 59.659 61.111 8.00 0.00 0.00 2.73
2242 6724 3.107661 CGTGGCACGAACCGGTAC 61.108 66.667 34.85 0.00 46.05 3.34
2255 6737 1.296056 CCTTTAGTGCCGGTTCGTGG 61.296 60.000 1.90 0.00 0.00 4.94
2256 6738 1.296056 CCCTTTAGTGCCGGTTCGTG 61.296 60.000 1.90 0.00 0.00 4.35
2257 6739 1.004200 CCCTTTAGTGCCGGTTCGT 60.004 57.895 1.90 0.00 0.00 3.85
2258 6740 1.743995 CCCCTTTAGTGCCGGTTCG 60.744 63.158 1.90 0.00 0.00 3.95
2259 6741 0.675837 GACCCCTTTAGTGCCGGTTC 60.676 60.000 1.90 0.00 0.00 3.62
2260 6742 1.131928 AGACCCCTTTAGTGCCGGTT 61.132 55.000 1.90 0.00 0.00 4.44
2261 6743 0.252375 TAGACCCCTTTAGTGCCGGT 60.252 55.000 1.90 0.00 0.00 5.28
2262 6744 0.906775 TTAGACCCCTTTAGTGCCGG 59.093 55.000 0.00 0.00 0.00 6.13
2263 6745 1.406477 GGTTAGACCCCTTTAGTGCCG 60.406 57.143 0.00 0.00 30.04 5.69
2264 6746 1.914108 AGGTTAGACCCCTTTAGTGCC 59.086 52.381 0.00 0.00 39.75 5.01
2265 6747 5.601729 ACTATAGGTTAGACCCCTTTAGTGC 59.398 44.000 4.43 0.00 42.00 4.40
2266 6748 6.267242 GGACTATAGGTTAGACCCCTTTAGTG 59.733 46.154 12.36 0.00 42.94 2.74
2267 6749 6.380414 GGACTATAGGTTAGACCCCTTTAGT 58.620 44.000 4.43 8.65 44.48 2.24
2268 6750 5.779260 GGGACTATAGGTTAGACCCCTTTAG 59.221 48.000 4.43 0.00 41.56 1.85
2269 6751 5.693863 CGGGACTATAGGTTAGACCCCTTTA 60.694 48.000 12.50 0.00 43.50 1.85
2270 6752 4.564799 GGGACTATAGGTTAGACCCCTTT 58.435 47.826 4.43 0.00 41.56 3.11
2271 6753 3.437637 CGGGACTATAGGTTAGACCCCTT 60.438 52.174 12.50 0.00 43.50 3.95
2272 6754 2.109657 CGGGACTATAGGTTAGACCCCT 59.890 54.545 12.50 0.00 43.50 4.79
2273 6755 2.523245 CGGGACTATAGGTTAGACCCC 58.477 57.143 12.50 8.75 43.50 4.95
2274 6756 2.158400 ACCGGGACTATAGGTTAGACCC 60.158 54.545 6.32 9.31 43.15 4.46
2275 6757 3.235750 ACCGGGACTATAGGTTAGACC 57.764 52.381 6.32 0.00 38.99 3.85
2276 6758 3.320256 CCAACCGGGACTATAGGTTAGAC 59.680 52.174 6.32 0.00 45.52 2.59
2277 6759 3.205056 TCCAACCGGGACTATAGGTTAGA 59.795 47.826 6.32 0.00 45.52 2.10
2278 6760 3.569491 TCCAACCGGGACTATAGGTTAG 58.431 50.000 6.32 0.00 45.52 2.34
2279 6761 3.205056 TCTCCAACCGGGACTATAGGTTA 59.795 47.826 6.32 0.00 45.52 2.85
2281 6763 1.572415 TCTCCAACCGGGACTATAGGT 59.428 52.381 6.32 0.00 42.15 3.08
2282 6764 1.962100 GTCTCCAACCGGGACTATAGG 59.038 57.143 6.32 0.00 42.15 2.57
2283 6765 2.361438 GTGTCTCCAACCGGGACTATAG 59.639 54.545 6.32 0.00 42.15 1.31
2284 6766 2.291735 TGTGTCTCCAACCGGGACTATA 60.292 50.000 6.32 0.00 42.15 1.31
2285 6767 1.192428 GTGTCTCCAACCGGGACTAT 58.808 55.000 6.32 0.00 42.15 2.12
2286 6768 0.178955 TGTGTCTCCAACCGGGACTA 60.179 55.000 6.32 0.00 42.15 2.59
2287 6769 1.052124 TTGTGTCTCCAACCGGGACT 61.052 55.000 6.32 0.00 42.15 3.85
2288 6770 0.179040 TTTGTGTCTCCAACCGGGAC 60.179 55.000 6.32 3.26 42.15 4.46
2289 6771 0.179040 GTTTGTGTCTCCAACCGGGA 60.179 55.000 6.32 0.00 45.89 5.14
2290 6772 1.170290 GGTTTGTGTCTCCAACCGGG 61.170 60.000 6.32 0.00 38.37 5.73
2291 6773 1.503818 CGGTTTGTGTCTCCAACCGG 61.504 60.000 17.93 0.00 36.37 5.28
2292 6774 1.503818 CCGGTTTGTGTCTCCAACCG 61.504 60.000 18.49 18.49 38.04 4.44
2293 6775 1.170290 CCCGGTTTGTGTCTCCAACC 61.170 60.000 0.00 0.00 0.00 3.77
2294 6776 0.179040 TCCCGGTTTGTGTCTCCAAC 60.179 55.000 0.00 0.00 0.00 3.77
2295 6777 0.179040 GTCCCGGTTTGTGTCTCCAA 60.179 55.000 0.00 0.00 0.00 3.53
2296 6778 1.052124 AGTCCCGGTTTGTGTCTCCA 61.052 55.000 0.00 0.00 0.00 3.86
2297 6779 0.971386 TAGTCCCGGTTTGTGTCTCC 59.029 55.000 0.00 0.00 0.00 3.71
2298 6780 3.181478 CCTATAGTCCCGGTTTGTGTCTC 60.181 52.174 0.00 0.00 0.00 3.36
2299 6781 2.764572 CCTATAGTCCCGGTTTGTGTCT 59.235 50.000 0.00 0.00 0.00 3.41
2300 6782 2.159000 CCCTATAGTCCCGGTTTGTGTC 60.159 54.545 0.00 0.00 0.00 3.67
2301 6783 1.835531 CCCTATAGTCCCGGTTTGTGT 59.164 52.381 0.00 0.00 0.00 3.72
2302 6784 1.474498 GCCCTATAGTCCCGGTTTGTG 60.474 57.143 0.00 0.00 0.00 3.33
2303 6785 0.835276 GCCCTATAGTCCCGGTTTGT 59.165 55.000 0.00 0.00 0.00 2.83
2304 6786 0.834612 TGCCCTATAGTCCCGGTTTG 59.165 55.000 0.00 0.00 0.00 2.93
2305 6787 1.587066 TTGCCCTATAGTCCCGGTTT 58.413 50.000 0.00 0.00 0.00 3.27
2306 6788 1.815757 ATTGCCCTATAGTCCCGGTT 58.184 50.000 0.00 0.00 0.00 4.44
2307 6789 1.815757 AATTGCCCTATAGTCCCGGT 58.184 50.000 0.00 0.00 0.00 5.28
2308 6790 2.951229 AAATTGCCCTATAGTCCCGG 57.049 50.000 0.00 0.00 0.00 5.73
2309 6791 3.815809 TGAAAATTGCCCTATAGTCCCG 58.184 45.455 0.00 0.00 0.00 5.14
2310 6792 5.656859 AGTTTGAAAATTGCCCTATAGTCCC 59.343 40.000 0.00 0.00 0.00 4.46
2311 6793 6.775594 AGTTTGAAAATTGCCCTATAGTCC 57.224 37.500 0.00 0.00 0.00 3.85
2312 6794 7.826690 TCAAGTTTGAAAATTGCCCTATAGTC 58.173 34.615 12.69 0.00 33.55 2.59
2313 6795 7.775053 TCAAGTTTGAAAATTGCCCTATAGT 57.225 32.000 12.69 0.00 33.55 2.12
2385 6867 9.724839 CAATCTTTTTGTTCTGCAAATTTTGAT 57.275 25.926 13.26 0.00 45.38 2.57
2386 6868 8.944029 TCAATCTTTTTGTTCTGCAAATTTTGA 58.056 25.926 13.26 0.00 45.38 2.69
2387 6869 9.724839 ATCAATCTTTTTGTTCTGCAAATTTTG 57.275 25.926 4.72 4.72 45.38 2.44
2388 6870 9.940166 GATCAATCTTTTTGTTCTGCAAATTTT 57.060 25.926 0.00 0.00 45.38 1.82
2389 6871 8.562052 GGATCAATCTTTTTGTTCTGCAAATTT 58.438 29.630 0.00 0.00 45.38 1.82
2390 6872 7.095523 CGGATCAATCTTTTTGTTCTGCAAATT 60.096 33.333 0.00 0.00 45.38 1.82
2391 6873 6.366877 CGGATCAATCTTTTTGTTCTGCAAAT 59.633 34.615 0.00 0.00 45.38 2.32
2392 6874 5.691305 CGGATCAATCTTTTTGTTCTGCAAA 59.309 36.000 0.00 0.00 44.52 3.68
2393 6875 5.221880 CGGATCAATCTTTTTGTTCTGCAA 58.778 37.500 0.00 0.00 34.87 4.08
2394 6876 4.797471 CGGATCAATCTTTTTGTTCTGCA 58.203 39.130 0.00 0.00 0.00 4.41
2395 6877 3.609807 GCGGATCAATCTTTTTGTTCTGC 59.390 43.478 12.06 12.06 40.84 4.26
2396 6878 5.051891 AGCGGATCAATCTTTTTGTTCTG 57.948 39.130 0.00 0.00 0.00 3.02
2397 6879 6.817765 TTAGCGGATCAATCTTTTTGTTCT 57.182 33.333 0.00 0.00 0.00 3.01
2398 6880 8.181573 TGTATTAGCGGATCAATCTTTTTGTTC 58.818 33.333 0.00 0.00 0.00 3.18
2399 6881 8.050778 TGTATTAGCGGATCAATCTTTTTGTT 57.949 30.769 0.00 0.00 0.00 2.83
2400 6882 7.624360 TGTATTAGCGGATCAATCTTTTTGT 57.376 32.000 0.00 0.00 0.00 2.83
2401 6883 8.184192 ACTTGTATTAGCGGATCAATCTTTTTG 58.816 33.333 0.00 0.00 0.00 2.44
2402 6884 8.281212 ACTTGTATTAGCGGATCAATCTTTTT 57.719 30.769 0.00 0.00 0.00 1.94
2403 6885 7.865706 ACTTGTATTAGCGGATCAATCTTTT 57.134 32.000 0.00 0.00 0.00 2.27
2404 6886 7.865706 AACTTGTATTAGCGGATCAATCTTT 57.134 32.000 0.00 0.00 0.00 2.52
2405 6887 7.865706 AAACTTGTATTAGCGGATCAATCTT 57.134 32.000 0.00 0.00 0.00 2.40
2406 6888 7.012421 GGAAAACTTGTATTAGCGGATCAATCT 59.988 37.037 0.00 0.00 0.00 2.40
2407 6889 7.132863 GGAAAACTTGTATTAGCGGATCAATC 58.867 38.462 0.00 0.00 0.00 2.67
2408 6890 6.601613 TGGAAAACTTGTATTAGCGGATCAAT 59.398 34.615 0.00 0.00 0.00 2.57
2409 6891 5.941058 TGGAAAACTTGTATTAGCGGATCAA 59.059 36.000 0.00 0.00 0.00 2.57
2410 6892 5.492895 TGGAAAACTTGTATTAGCGGATCA 58.507 37.500 0.00 0.00 0.00 2.92
2411 6893 6.619801 ATGGAAAACTTGTATTAGCGGATC 57.380 37.500 0.00 0.00 0.00 3.36
2412 6894 7.404671 AAATGGAAAACTTGTATTAGCGGAT 57.595 32.000 0.00 0.00 0.00 4.18
2413 6895 6.402766 CGAAATGGAAAACTTGTATTAGCGGA 60.403 38.462 0.00 0.00 0.00 5.54
2414 6896 5.737290 CGAAATGGAAAACTTGTATTAGCGG 59.263 40.000 0.00 0.00 0.00 5.52
2415 6897 6.464834 GTCGAAATGGAAAACTTGTATTAGCG 59.535 38.462 0.00 0.00 0.00 4.26
2416 6898 6.464834 CGTCGAAATGGAAAACTTGTATTAGC 59.535 38.462 0.00 0.00 0.00 3.09
2417 6899 7.735500 TCGTCGAAATGGAAAACTTGTATTAG 58.264 34.615 0.00 0.00 0.00 1.73
2418 6900 7.655236 TCGTCGAAATGGAAAACTTGTATTA 57.345 32.000 0.00 0.00 0.00 0.98
2419 6901 6.548441 TCGTCGAAATGGAAAACTTGTATT 57.452 33.333 0.00 0.00 0.00 1.89
2420 6902 6.737254 ATCGTCGAAATGGAAAACTTGTAT 57.263 33.333 0.00 0.00 0.00 2.29
2421 6903 6.548441 AATCGTCGAAATGGAAAACTTGTA 57.452 33.333 0.00 0.00 0.00 2.41
2422 6904 5.432885 AATCGTCGAAATGGAAAACTTGT 57.567 34.783 0.00 0.00 0.00 3.16
2423 6905 6.747659 AAAATCGTCGAAATGGAAAACTTG 57.252 33.333 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.