Multiple sequence alignment - TraesCS4A01G457800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G457800 chr4A 100.000 3202 0 0 1 3202 722907814 722904613 0.000000e+00 5914.0
1 TraesCS4A01G457800 chr4A 94.937 711 32 1 1616 2326 722838972 722839678 0.000000e+00 1110.0
2 TraesCS4A01G457800 chr4A 87.419 620 52 18 977 1584 722837920 722838525 0.000000e+00 689.0
3 TraesCS4A01G457800 chr4A 87.097 527 47 11 2648 3166 722887111 722886598 7.700000e-161 577.0
4 TraesCS4A01G457800 chr4A 85.535 159 16 6 998 1150 740503130 740502973 3.310000e-35 159.0
5 TraesCS4A01G457800 chr4A 85.185 162 17 6 998 1153 742028854 742028694 3.310000e-35 159.0
6 TraesCS4A01G457800 chr7A 94.930 710 31 2 1616 2325 13194231 13193527 0.000000e+00 1107.0
7 TraesCS4A01G457800 chr7A 89.578 806 52 13 2344 3141 13100539 13101320 0.000000e+00 994.0
8 TraesCS4A01G457800 chr7A 92.934 651 33 6 1616 2262 13626681 13626040 0.000000e+00 935.0
9 TraesCS4A01G457800 chr7A 88.988 672 48 12 1 660 13094273 13094930 0.000000e+00 808.0
10 TraesCS4A01G457800 chr7A 86.822 516 53 8 2657 3166 13114312 13114818 2.160000e-156 562.0
11 TraesCS4A01G457800 chr7A 86.900 458 41 9 988 1431 13195514 13195062 2.220000e-136 496.0
12 TraesCS4A01G457800 chr7A 84.017 463 64 6 2726 3178 13054871 13054409 1.360000e-118 436.0
13 TraesCS4A01G457800 chr7A 91.822 269 22 0 1616 1884 3386124 3385856 3.020000e-100 375.0
14 TraesCS4A01G457800 chr7A 85.882 340 38 3 1991 2328 2997745 2998076 1.410000e-93 353.0
15 TraesCS4A01G457800 chr7A 85.251 339 38 4 1994 2329 3385848 3385519 3.960000e-89 339.0
16 TraesCS4A01G457800 chr7A 97.059 68 2 0 661 728 13096635 13096702 7.260000e-22 115.0
17 TraesCS4A01G457800 chr7A 94.118 51 3 0 286 336 3840431 3840381 9.520000e-11 78.7
18 TraesCS4A01G457800 chr7A 97.619 42 0 1 858 898 13323476 13323435 1.590000e-08 71.3
19 TraesCS4A01G457800 chr7D 95.692 650 23 2 1616 2264 13718884 13718239 0.000000e+00 1040.0
20 TraesCS4A01G457800 chr7D 89.920 754 50 9 2403 3141 13609998 13610740 0.000000e+00 948.0
21 TraesCS4A01G457800 chr7D 83.575 895 79 31 726 1595 13720449 13719598 0.000000e+00 776.0
22 TraesCS4A01G457800 chr7D 86.822 516 53 6 2657 3166 13659049 13659555 2.160000e-156 562.0
23 TraesCS4A01G457800 chr7D 80.795 604 51 33 779 1355 13734827 13734262 2.300000e-111 412.0
24 TraesCS4A01G457800 chr7D 81.496 508 79 8 2657 3158 13511506 13511008 1.380000e-108 403.0
25 TraesCS4A01G457800 chr7D 90.182 275 22 3 257 529 13605078 13605349 1.410000e-93 353.0
26 TraesCS4A01G457800 chr7D 88.699 292 24 5 1 292 13604794 13605076 6.570000e-92 348.0
27 TraesCS4A01G457800 chr7D 86.937 222 20 5 2989 3202 2412540 2412760 1.150000e-59 241.0
28 TraesCS4A01G457800 chr7D 87.736 212 16 8 521 728 13606130 13606335 4.130000e-59 239.0
29 TraesCS4A01G457800 chr7D 85.124 121 12 5 1375 1495 13722064 13721950 5.610000e-23 119.0
30 TraesCS4A01G457800 chr7D 97.015 67 2 0 1499 1565 13721919 13721853 2.610000e-21 113.0
31 TraesCS4A01G457800 chr7D 87.500 56 7 0 335 390 7341697 7341752 7.410000e-07 65.8
32 TraesCS4A01G457800 chr7D 94.737 38 2 0 1558 1595 13721148 13721111 3.450000e-05 60.2
33 TraesCS4A01G457800 chr3D 87.990 816 59 12 2344 3144 585090055 585089264 0.000000e+00 928.0
34 TraesCS4A01G457800 chr3D 89.041 292 23 5 1 292 585096507 585096225 1.410000e-93 353.0
35 TraesCS4A01G457800 chr3D 89.778 225 5 2 521 728 585094787 585094564 4.070000e-69 272.0
36 TraesCS4A01G457800 chr3D 89.109 202 18 2 328 529 585095747 585095550 6.860000e-62 248.0
37 TraesCS4A01G457800 chr3D 82.105 95 14 3 335 427 600091063 600091156 9.520000e-11 78.7
38 TraesCS4A01G457800 chr4B 76.198 605 118 15 2588 3179 248910442 248909851 2.420000e-76 296.0
39 TraesCS4A01G457800 chr3A 90.476 63 4 2 277 339 44323273 44323213 7.360000e-12 82.4
40 TraesCS4A01G457800 chr3A 85.965 57 7 1 328 384 744941132 744941077 3.450000e-05 60.2
41 TraesCS4A01G457800 chr3A 85.965 57 7 1 328 384 745014059 745014004 3.450000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G457800 chr4A 722904613 722907814 3201 True 5914.00 5914 100.000000 1 3202 1 chr4A.!!$R2 3201
1 TraesCS4A01G457800 chr4A 722837920 722839678 1758 False 899.50 1110 91.178000 977 2326 2 chr4A.!!$F1 1349
2 TraesCS4A01G457800 chr4A 722886598 722887111 513 True 577.00 577 87.097000 2648 3166 1 chr4A.!!$R1 518
3 TraesCS4A01G457800 chr7A 13626040 13626681 641 True 935.00 935 92.934000 1616 2262 1 chr7A.!!$R4 646
4 TraesCS4A01G457800 chr7A 13193527 13195514 1987 True 801.50 1107 90.915000 988 2325 2 chr7A.!!$R6 1337
5 TraesCS4A01G457800 chr7A 13094273 13101320 7047 False 639.00 994 91.875000 1 3141 3 chr7A.!!$F3 3140
6 TraesCS4A01G457800 chr7A 13114312 13114818 506 False 562.00 562 86.822000 2657 3166 1 chr7A.!!$F2 509
7 TraesCS4A01G457800 chr7A 3385519 3386124 605 True 357.00 375 88.536500 1616 2329 2 chr7A.!!$R5 713
8 TraesCS4A01G457800 chr7D 13659049 13659555 506 False 562.00 562 86.822000 2657 3166 1 chr7D.!!$F3 509
9 TraesCS4A01G457800 chr7D 13604794 13610740 5946 False 472.00 948 89.134250 1 3141 4 chr7D.!!$F4 3140
10 TraesCS4A01G457800 chr7D 13718239 13722064 3825 True 421.64 1040 91.228600 726 2264 5 chr7D.!!$R3 1538
11 TraesCS4A01G457800 chr7D 13734262 13734827 565 True 412.00 412 80.795000 779 1355 1 chr7D.!!$R2 576
12 TraesCS4A01G457800 chr3D 585089264 585090055 791 True 928.00 928 87.990000 2344 3144 1 chr3D.!!$R1 800
13 TraesCS4A01G457800 chr3D 585094564 585096507 1943 True 291.00 353 89.309333 1 728 3 chr3D.!!$R2 727
14 TraesCS4A01G457800 chr4B 248909851 248910442 591 True 296.00 296 76.198000 2588 3179 1 chr4B.!!$R1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 1906 0.033090 CTATTCCCGGGTCCGCTTAC 59.967 60.0 22.86 0.0 38.24 2.34 F
1359 2640 0.252696 TGTCAGGACCCACTAGCCAT 60.253 55.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 2838 0.166597 CACAACAGTGGTGCTATGCG 59.833 55.000 8.45 0.00 0.0 4.73 R
2762 11343 1.153086 GCTCCTGGTGCACTATGGG 60.153 63.158 17.98 9.07 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.104622 AGTTTGTGAAGCATTTTGGGGG 59.895 45.455 0.00 0.00 0.00 5.40
116 117 4.690184 TCATCATCTGCATGTTGTTGTC 57.310 40.909 0.00 0.00 33.17 3.18
117 118 3.441222 TCATCATCTGCATGTTGTTGTCC 59.559 43.478 0.00 0.00 33.17 4.02
118 119 1.805943 TCATCTGCATGTTGTTGTCCG 59.194 47.619 0.00 0.00 0.00 4.79
126 127 1.019805 TGTTGTTGTCCGCGTGTGAA 61.020 50.000 4.92 0.00 0.00 3.18
133 134 0.505655 GTCCGCGTGTGAACTGTTAC 59.494 55.000 4.92 0.00 0.00 2.50
137 138 1.652588 CGCGTGTGAACTGTTACGTTG 60.653 52.381 13.77 5.63 38.67 4.10
211 212 6.001460 AGAAATTTGGTCCTTACGAACATCA 58.999 36.000 0.00 0.00 38.24 3.07
212 213 6.659242 AGAAATTTGGTCCTTACGAACATCAT 59.341 34.615 0.00 0.00 38.24 2.45
213 214 6.834168 AATTTGGTCCTTACGAACATCATT 57.166 33.333 0.00 0.00 38.24 2.57
214 215 5.873179 TTTGGTCCTTACGAACATCATTC 57.127 39.130 0.00 0.00 38.24 2.67
216 217 3.193903 TGGTCCTTACGAACATCATTCGA 59.806 43.478 15.35 0.00 43.97 3.71
235 236 9.894783 TCATTCGATTATACAAGTCTAGTTAGC 57.105 33.333 0.00 0.00 0.00 3.09
239 240 6.303496 CGATTATACAAGTCTAGTTAGCAGCG 59.697 42.308 0.00 0.00 0.00 5.18
246 247 2.099263 GTCTAGTTAGCAGCGGACATGA 59.901 50.000 0.00 0.00 0.00 3.07
251 252 0.459899 TAGCAGCGGACATGATTCGT 59.540 50.000 0.00 0.00 0.00 3.85
262 263 5.174035 CGGACATGATTCGTCAGAAGATAAC 59.826 44.000 0.00 0.00 40.09 1.89
281 282 0.532862 CGCAGGGGTACTAGCCAATG 60.533 60.000 6.63 5.68 37.54 2.82
319 359 2.128771 ATGACAAAATAGCGTGGCCT 57.871 45.000 3.32 0.00 0.00 5.19
358 801 3.119459 ACGCGCTATAGCATGCTATTAGT 60.119 43.478 37.80 26.70 42.21 2.24
370 813 7.905265 AGCATGCTATTAGTGAGACATTCTAT 58.095 34.615 21.21 0.00 0.00 1.98
404 847 3.060602 AGCAAGAACAGCTTAGAACGTC 58.939 45.455 0.00 0.00 39.87 4.34
452 895 4.522789 AGCACGGTTTAAGATTGTGGAAAT 59.477 37.500 0.00 0.00 0.00 2.17
537 1772 3.891977 ACTATCCAAGCAAGATAGCGAGA 59.108 43.478 14.25 0.00 44.71 4.04
538 1773 2.879002 TCCAAGCAAGATAGCGAGAG 57.121 50.000 0.00 0.00 40.15 3.20
539 1774 2.379005 TCCAAGCAAGATAGCGAGAGA 58.621 47.619 0.00 0.00 40.15 3.10
540 1775 2.360483 TCCAAGCAAGATAGCGAGAGAG 59.640 50.000 0.00 0.00 40.15 3.20
541 1776 2.360483 CCAAGCAAGATAGCGAGAGAGA 59.640 50.000 0.00 0.00 40.15 3.10
542 1777 3.181482 CCAAGCAAGATAGCGAGAGAGAA 60.181 47.826 0.00 0.00 40.15 2.87
543 1778 4.428209 CAAGCAAGATAGCGAGAGAGAAA 58.572 43.478 0.00 0.00 40.15 2.52
544 1779 4.305989 AGCAAGATAGCGAGAGAGAAAG 57.694 45.455 0.00 0.00 40.15 2.62
545 1780 3.699038 AGCAAGATAGCGAGAGAGAAAGT 59.301 43.478 0.00 0.00 40.15 2.66
546 1781 4.041723 GCAAGATAGCGAGAGAGAAAGTC 58.958 47.826 0.00 0.00 0.00 3.01
547 1782 4.278858 CAAGATAGCGAGAGAGAAAGTCG 58.721 47.826 0.00 0.00 36.77 4.18
548 1783 3.537580 AGATAGCGAGAGAGAAAGTCGT 58.462 45.455 0.00 0.00 36.09 4.34
549 1784 3.558418 AGATAGCGAGAGAGAAAGTCGTC 59.442 47.826 0.00 0.00 36.09 4.20
550 1785 1.524848 AGCGAGAGAGAAAGTCGTCA 58.475 50.000 0.00 0.00 36.09 4.35
551 1786 1.880675 AGCGAGAGAGAAAGTCGTCAA 59.119 47.619 0.00 0.00 36.09 3.18
552 1787 2.095466 AGCGAGAGAGAAAGTCGTCAAG 60.095 50.000 0.00 0.00 36.09 3.02
553 1788 2.246789 CGAGAGAGAAAGTCGTCAAGC 58.753 52.381 0.00 0.00 0.00 4.01
554 1789 2.350868 CGAGAGAGAAAGTCGTCAAGCA 60.351 50.000 0.00 0.00 0.00 3.91
555 1790 3.643763 GAGAGAGAAAGTCGTCAAGCAA 58.356 45.455 0.00 0.00 0.00 3.91
556 1791 3.648009 AGAGAGAAAGTCGTCAAGCAAG 58.352 45.455 0.00 0.00 0.00 4.01
557 1792 2.139118 AGAGAAAGTCGTCAAGCAAGC 58.861 47.619 0.00 0.00 0.00 4.01
558 1793 1.867233 GAGAAAGTCGTCAAGCAAGCA 59.133 47.619 0.00 0.00 0.00 3.91
559 1794 2.481952 GAGAAAGTCGTCAAGCAAGCAT 59.518 45.455 0.00 0.00 0.00 3.79
560 1795 2.225019 AGAAAGTCGTCAAGCAAGCATG 59.775 45.455 0.00 0.00 0.00 4.06
561 1796 1.597742 AAGTCGTCAAGCAAGCATGT 58.402 45.000 0.00 0.00 0.00 3.21
562 1797 1.597742 AGTCGTCAAGCAAGCATGTT 58.402 45.000 0.00 0.00 0.00 2.71
563 1798 1.532868 AGTCGTCAAGCAAGCATGTTC 59.467 47.619 0.00 0.00 0.00 3.18
564 1799 1.532868 GTCGTCAAGCAAGCATGTTCT 59.467 47.619 0.00 0.00 0.00 3.01
565 1800 1.532437 TCGTCAAGCAAGCATGTTCTG 59.468 47.619 0.00 0.00 0.00 3.02
566 1801 1.532437 CGTCAAGCAAGCATGTTCTGA 59.468 47.619 0.00 0.00 0.00 3.27
567 1802 2.663879 CGTCAAGCAAGCATGTTCTGAC 60.664 50.000 8.96 8.96 31.30 3.51
568 1803 1.881973 TCAAGCAAGCATGTTCTGACC 59.118 47.619 0.00 0.00 0.00 4.02
569 1804 1.610038 CAAGCAAGCATGTTCTGACCA 59.390 47.619 0.00 0.00 0.00 4.02
570 1805 1.531423 AGCAAGCATGTTCTGACCAG 58.469 50.000 0.00 0.00 0.00 4.00
571 1806 0.524862 GCAAGCATGTTCTGACCAGG 59.475 55.000 0.00 0.00 0.00 4.45
572 1807 0.524862 CAAGCATGTTCTGACCAGGC 59.475 55.000 3.54 3.54 39.75 4.85
573 1808 2.073232 AGCATGTTCTGACCAGGCT 58.927 52.632 8.58 8.58 44.34 4.58
574 1809 1.279496 AGCATGTTCTGACCAGGCTA 58.721 50.000 12.67 0.00 46.93 3.93
575 1810 1.630369 AGCATGTTCTGACCAGGCTAA 59.370 47.619 12.67 0.00 46.93 3.09
576 1811 2.240667 AGCATGTTCTGACCAGGCTAAT 59.759 45.455 12.67 0.00 46.93 1.73
577 1812 3.019564 GCATGTTCTGACCAGGCTAATT 58.980 45.455 4.55 0.00 36.72 1.40
578 1813 3.445096 GCATGTTCTGACCAGGCTAATTT 59.555 43.478 4.55 0.00 36.72 1.82
579 1814 4.676196 GCATGTTCTGACCAGGCTAATTTG 60.676 45.833 4.55 0.00 36.72 2.32
580 1815 4.098914 TGTTCTGACCAGGCTAATTTGT 57.901 40.909 0.00 0.00 0.00 2.83
581 1816 4.072131 TGTTCTGACCAGGCTAATTTGTC 58.928 43.478 0.00 0.00 0.00 3.18
582 1817 4.072131 GTTCTGACCAGGCTAATTTGTCA 58.928 43.478 0.00 0.00 34.95 3.58
583 1818 4.574674 TCTGACCAGGCTAATTTGTCAT 57.425 40.909 0.00 0.00 35.59 3.06
584 1819 4.922206 TCTGACCAGGCTAATTTGTCATT 58.078 39.130 0.00 0.00 35.59 2.57
585 1820 4.943705 TCTGACCAGGCTAATTTGTCATTC 59.056 41.667 0.00 0.00 35.59 2.67
586 1821 4.922206 TGACCAGGCTAATTTGTCATTCT 58.078 39.130 0.00 0.00 31.45 2.40
587 1822 4.701651 TGACCAGGCTAATTTGTCATTCTG 59.298 41.667 0.00 0.00 31.45 3.02
588 1823 4.922206 ACCAGGCTAATTTGTCATTCTGA 58.078 39.130 0.00 0.00 0.00 3.27
590 1825 4.096984 CCAGGCTAATTTGTCATTCTGACC 59.903 45.833 4.91 0.00 46.40 4.02
591 1826 3.941483 AGGCTAATTTGTCATTCTGACCG 59.059 43.478 4.91 0.00 46.40 4.79
592 1827 3.487544 GGCTAATTTGTCATTCTGACCGC 60.488 47.826 4.91 0.00 46.40 5.68
593 1828 3.375299 GCTAATTTGTCATTCTGACCGCT 59.625 43.478 4.91 0.00 46.40 5.52
594 1829 4.570772 GCTAATTTGTCATTCTGACCGCTA 59.429 41.667 4.91 0.00 46.40 4.26
595 1830 4.946784 AATTTGTCATTCTGACCGCTAC 57.053 40.909 4.91 0.00 46.40 3.58
596 1831 3.678056 TTTGTCATTCTGACCGCTACT 57.322 42.857 4.91 0.00 46.40 2.57
597 1832 2.941453 TGTCATTCTGACCGCTACTC 57.059 50.000 4.91 0.00 46.40 2.59
598 1833 1.476891 TGTCATTCTGACCGCTACTCC 59.523 52.381 4.91 0.00 46.40 3.85
599 1834 1.476891 GTCATTCTGACCGCTACTCCA 59.523 52.381 0.00 0.00 41.37 3.86
600 1835 2.101582 GTCATTCTGACCGCTACTCCAT 59.898 50.000 0.00 0.00 41.37 3.41
601 1836 2.101415 TCATTCTGACCGCTACTCCATG 59.899 50.000 0.00 0.00 0.00 3.66
602 1837 1.847328 TTCTGACCGCTACTCCATGA 58.153 50.000 0.00 0.00 0.00 3.07
603 1838 1.393603 TCTGACCGCTACTCCATGAG 58.606 55.000 0.00 0.00 35.52 2.90
604 1839 1.064685 TCTGACCGCTACTCCATGAGA 60.065 52.381 0.00 0.00 33.32 3.27
606 1841 1.064685 TGACCGCTACTCCATGAGAGA 60.065 52.381 15.51 0.00 46.50 3.10
607 1842 2.025155 GACCGCTACTCCATGAGAGAA 58.975 52.381 15.51 0.00 46.50 2.87
608 1843 2.028130 ACCGCTACTCCATGAGAGAAG 58.972 52.381 15.51 5.94 46.50 2.85
609 1844 1.339610 CCGCTACTCCATGAGAGAAGG 59.660 57.143 15.51 9.74 46.50 3.46
610 1845 2.028130 CGCTACTCCATGAGAGAAGGT 58.972 52.381 15.51 0.43 46.50 3.50
611 1846 2.223688 CGCTACTCCATGAGAGAAGGTG 60.224 54.545 15.51 8.85 46.50 4.00
612 1847 2.102252 GCTACTCCATGAGAGAAGGTGG 59.898 54.545 15.51 0.00 46.50 4.61
613 1848 1.577736 ACTCCATGAGAGAAGGTGGG 58.422 55.000 15.51 0.00 46.50 4.61
614 1849 1.203364 ACTCCATGAGAGAAGGTGGGT 60.203 52.381 15.51 0.00 46.50 4.51
615 1850 2.044492 ACTCCATGAGAGAAGGTGGGTA 59.956 50.000 15.51 0.00 46.50 3.69
616 1851 2.432510 CTCCATGAGAGAAGGTGGGTAC 59.567 54.545 0.00 0.00 46.50 3.34
617 1852 2.187958 CCATGAGAGAAGGTGGGTACA 58.812 52.381 0.00 0.00 0.00 2.90
618 1853 2.571653 CCATGAGAGAAGGTGGGTACAA 59.428 50.000 0.00 0.00 0.00 2.41
619 1854 3.009033 CCATGAGAGAAGGTGGGTACAAA 59.991 47.826 0.00 0.00 0.00 2.83
620 1855 3.764237 TGAGAGAAGGTGGGTACAAAC 57.236 47.619 0.00 0.00 0.00 2.93
621 1856 3.314693 TGAGAGAAGGTGGGTACAAACT 58.685 45.455 0.00 0.00 0.00 2.66
622 1857 3.323979 TGAGAGAAGGTGGGTACAAACTC 59.676 47.826 0.00 0.00 0.00 3.01
623 1858 3.314693 AGAGAAGGTGGGTACAAACTCA 58.685 45.455 0.00 0.00 32.09 3.41
631 1866 2.670019 GGTACAAACTCACCCCCTTT 57.330 50.000 0.00 0.00 0.00 3.11
632 1867 2.511659 GGTACAAACTCACCCCCTTTC 58.488 52.381 0.00 0.00 0.00 2.62
633 1868 2.107726 GGTACAAACTCACCCCCTTTCT 59.892 50.000 0.00 0.00 0.00 2.52
634 1869 3.436035 GGTACAAACTCACCCCCTTTCTT 60.436 47.826 0.00 0.00 0.00 2.52
635 1870 3.398318 ACAAACTCACCCCCTTTCTTT 57.602 42.857 0.00 0.00 0.00 2.52
636 1871 3.031013 ACAAACTCACCCCCTTTCTTTG 58.969 45.455 0.00 0.00 0.00 2.77
637 1872 3.295973 CAAACTCACCCCCTTTCTTTGA 58.704 45.455 0.00 0.00 0.00 2.69
638 1873 3.897505 CAAACTCACCCCCTTTCTTTGAT 59.102 43.478 0.00 0.00 0.00 2.57
639 1874 3.441500 ACTCACCCCCTTTCTTTGATC 57.558 47.619 0.00 0.00 0.00 2.92
640 1875 2.041755 ACTCACCCCCTTTCTTTGATCC 59.958 50.000 0.00 0.00 0.00 3.36
641 1876 2.041620 CTCACCCCCTTTCTTTGATCCA 59.958 50.000 0.00 0.00 0.00 3.41
642 1877 2.041620 TCACCCCCTTTCTTTGATCCAG 59.958 50.000 0.00 0.00 0.00 3.86
643 1878 2.073776 ACCCCCTTTCTTTGATCCAGT 58.926 47.619 0.00 0.00 0.00 4.00
644 1879 2.225117 ACCCCCTTTCTTTGATCCAGTG 60.225 50.000 0.00 0.00 0.00 3.66
645 1880 2.225117 CCCCCTTTCTTTGATCCAGTGT 60.225 50.000 0.00 0.00 0.00 3.55
646 1881 3.500343 CCCCTTTCTTTGATCCAGTGTT 58.500 45.455 0.00 0.00 0.00 3.32
647 1882 3.507622 CCCCTTTCTTTGATCCAGTGTTC 59.492 47.826 0.00 0.00 0.00 3.18
648 1883 3.507622 CCCTTTCTTTGATCCAGTGTTCC 59.492 47.826 0.00 0.00 0.00 3.62
649 1884 4.144297 CCTTTCTTTGATCCAGTGTTCCA 58.856 43.478 0.00 0.00 0.00 3.53
650 1885 4.768968 CCTTTCTTTGATCCAGTGTTCCAT 59.231 41.667 0.00 0.00 0.00 3.41
651 1886 5.244626 CCTTTCTTTGATCCAGTGTTCCATT 59.755 40.000 0.00 0.00 0.00 3.16
652 1887 5.964958 TTCTTTGATCCAGTGTTCCATTC 57.035 39.130 0.00 0.00 0.00 2.67
653 1888 5.246981 TCTTTGATCCAGTGTTCCATTCT 57.753 39.130 0.00 0.00 0.00 2.40
654 1889 6.373005 TCTTTGATCCAGTGTTCCATTCTA 57.627 37.500 0.00 0.00 0.00 2.10
655 1890 6.962182 TCTTTGATCCAGTGTTCCATTCTAT 58.038 36.000 0.00 0.00 0.00 1.98
656 1891 7.405292 TCTTTGATCCAGTGTTCCATTCTATT 58.595 34.615 0.00 0.00 0.00 1.73
657 1892 7.554118 TCTTTGATCCAGTGTTCCATTCTATTC 59.446 37.037 0.00 0.00 0.00 1.75
658 1893 5.684704 TGATCCAGTGTTCCATTCTATTCC 58.315 41.667 0.00 0.00 0.00 3.01
659 1894 4.503714 TCCAGTGTTCCATTCTATTCCC 57.496 45.455 0.00 0.00 0.00 3.97
660 1895 3.118408 TCCAGTGTTCCATTCTATTCCCG 60.118 47.826 0.00 0.00 0.00 5.14
661 1896 3.206150 CAGTGTTCCATTCTATTCCCGG 58.794 50.000 0.00 0.00 0.00 5.73
662 1897 2.172717 AGTGTTCCATTCTATTCCCGGG 59.827 50.000 16.85 16.85 0.00 5.73
663 1898 2.092592 GTGTTCCATTCTATTCCCGGGT 60.093 50.000 22.86 4.16 0.00 5.28
664 1899 2.171870 TGTTCCATTCTATTCCCGGGTC 59.828 50.000 22.86 0.00 0.00 4.46
665 1900 1.430992 TCCATTCTATTCCCGGGTCC 58.569 55.000 22.86 0.00 0.00 4.46
666 1901 0.034896 CCATTCTATTCCCGGGTCCG 59.965 60.000 22.86 7.94 39.44 4.79
667 1902 0.602905 CATTCTATTCCCGGGTCCGC 60.603 60.000 22.86 0.00 38.24 5.54
668 1903 0.763223 ATTCTATTCCCGGGTCCGCT 60.763 55.000 22.86 4.31 38.24 5.52
669 1904 0.979187 TTCTATTCCCGGGTCCGCTT 60.979 55.000 22.86 2.62 38.24 4.68
670 1905 0.106066 TCTATTCCCGGGTCCGCTTA 60.106 55.000 22.86 0.00 38.24 3.09
671 1906 0.033090 CTATTCCCGGGTCCGCTTAC 59.967 60.000 22.86 0.00 38.24 2.34
672 1907 0.397535 TATTCCCGGGTCCGCTTACT 60.398 55.000 22.86 0.00 38.24 2.24
673 1908 0.397535 ATTCCCGGGTCCGCTTACTA 60.398 55.000 22.86 0.00 38.24 1.82
674 1909 0.614415 TTCCCGGGTCCGCTTACTAA 60.614 55.000 22.86 0.00 38.24 2.24
675 1910 0.397535 TCCCGGGTCCGCTTACTAAT 60.398 55.000 22.86 0.00 38.24 1.73
676 1911 1.133513 TCCCGGGTCCGCTTACTAATA 60.134 52.381 22.86 0.00 38.24 0.98
677 1912 1.000171 CCCGGGTCCGCTTACTAATAC 60.000 57.143 14.18 0.00 38.24 1.89
678 1913 1.682854 CCGGGTCCGCTTACTAATACA 59.317 52.381 3.52 0.00 38.24 2.29
679 1914 2.288030 CCGGGTCCGCTTACTAATACAG 60.288 54.545 3.52 0.00 38.24 2.74
680 1915 2.620115 CGGGTCCGCTTACTAATACAGA 59.380 50.000 0.00 0.00 0.00 3.41
681 1916 3.304525 CGGGTCCGCTTACTAATACAGAG 60.305 52.174 0.00 0.00 0.00 3.35
682 1917 3.887716 GGGTCCGCTTACTAATACAGAGA 59.112 47.826 0.00 0.00 0.00 3.10
683 1918 4.023021 GGGTCCGCTTACTAATACAGAGAG 60.023 50.000 0.00 0.00 0.00 3.20
684 1919 4.023021 GGTCCGCTTACTAATACAGAGAGG 60.023 50.000 0.00 0.00 0.00 3.69
685 1920 4.023021 GTCCGCTTACTAATACAGAGAGGG 60.023 50.000 0.00 0.00 0.00 4.30
686 1921 3.890147 CCGCTTACTAATACAGAGAGGGT 59.110 47.826 0.00 0.00 0.00 4.34
687 1922 5.068636 CCGCTTACTAATACAGAGAGGGTA 58.931 45.833 0.00 0.00 0.00 3.69
688 1923 5.048852 CCGCTTACTAATACAGAGAGGGTAC 60.049 48.000 0.00 0.00 0.00 3.34
689 1924 5.764192 CGCTTACTAATACAGAGAGGGTACT 59.236 44.000 0.00 0.00 0.00 2.73
690 1925 6.293516 CGCTTACTAATACAGAGAGGGTACTG 60.294 46.154 0.00 0.00 39.65 2.74
691 1926 6.771749 GCTTACTAATACAGAGAGGGTACTGA 59.228 42.308 0.00 0.00 37.54 3.41
692 1927 7.284944 GCTTACTAATACAGAGAGGGTACTGAA 59.715 40.741 0.00 0.00 37.54 3.02
693 1928 9.357161 CTTACTAATACAGAGAGGGTACTGAAT 57.643 37.037 0.00 0.00 37.54 2.57
694 1929 7.589958 ACTAATACAGAGAGGGTACTGAATG 57.410 40.000 0.00 0.00 37.54 2.67
695 1930 7.355101 ACTAATACAGAGAGGGTACTGAATGA 58.645 38.462 0.00 0.00 37.54 2.57
696 1931 8.007742 ACTAATACAGAGAGGGTACTGAATGAT 58.992 37.037 0.00 0.00 37.54 2.45
697 1932 6.909550 ATACAGAGAGGGTACTGAATGATC 57.090 41.667 0.00 0.00 37.54 2.92
698 1933 3.634448 ACAGAGAGGGTACTGAATGATCG 59.366 47.826 0.00 0.00 37.54 3.69
699 1934 2.625790 AGAGAGGGTACTGAATGATCGC 59.374 50.000 0.00 0.00 0.00 4.58
700 1935 2.625790 GAGAGGGTACTGAATGATCGCT 59.374 50.000 0.00 0.00 0.00 4.93
701 1936 2.363680 AGAGGGTACTGAATGATCGCTG 59.636 50.000 0.00 0.00 0.00 5.18
702 1937 1.414181 AGGGTACTGAATGATCGCTGG 59.586 52.381 0.00 0.00 0.00 4.85
703 1938 1.412710 GGGTACTGAATGATCGCTGGA 59.587 52.381 0.00 0.00 0.00 3.86
704 1939 2.158957 GGGTACTGAATGATCGCTGGAA 60.159 50.000 0.00 0.00 0.00 3.53
705 1940 3.495100 GGGTACTGAATGATCGCTGGAAT 60.495 47.826 0.00 0.00 0.00 3.01
706 1941 3.496130 GGTACTGAATGATCGCTGGAATG 59.504 47.826 0.00 0.00 0.00 2.67
707 1942 2.569059 ACTGAATGATCGCTGGAATGG 58.431 47.619 0.00 0.00 0.00 3.16
708 1943 1.878088 CTGAATGATCGCTGGAATGGG 59.122 52.381 0.00 0.00 0.00 4.00
709 1944 1.242076 GAATGATCGCTGGAATGGGG 58.758 55.000 0.00 0.00 0.00 4.96
710 1945 0.846015 AATGATCGCTGGAATGGGGA 59.154 50.000 0.00 0.00 0.00 4.81
711 1946 1.070604 ATGATCGCTGGAATGGGGAT 58.929 50.000 0.00 0.00 38.70 3.85
712 1947 1.728323 TGATCGCTGGAATGGGGATA 58.272 50.000 0.00 0.00 36.68 2.59
713 1948 2.269023 TGATCGCTGGAATGGGGATAT 58.731 47.619 0.00 0.00 36.68 1.63
714 1949 2.026915 TGATCGCTGGAATGGGGATATG 60.027 50.000 0.00 0.00 36.68 1.78
715 1950 0.692476 TCGCTGGAATGGGGATATGG 59.308 55.000 0.00 0.00 0.00 2.74
716 1951 0.322816 CGCTGGAATGGGGATATGGG 60.323 60.000 0.00 0.00 0.00 4.00
717 1952 1.075601 GCTGGAATGGGGATATGGGA 58.924 55.000 0.00 0.00 0.00 4.37
718 1953 1.005215 GCTGGAATGGGGATATGGGAG 59.995 57.143 0.00 0.00 0.00 4.30
719 1954 2.636005 CTGGAATGGGGATATGGGAGA 58.364 52.381 0.00 0.00 0.00 3.71
720 1955 2.575279 CTGGAATGGGGATATGGGAGAG 59.425 54.545 0.00 0.00 0.00 3.20
721 1956 2.184339 TGGAATGGGGATATGGGAGAGA 59.816 50.000 0.00 0.00 0.00 3.10
722 1957 2.573915 GGAATGGGGATATGGGAGAGAC 59.426 54.545 0.00 0.00 0.00 3.36
723 1958 2.350863 ATGGGGATATGGGAGAGACC 57.649 55.000 0.00 0.00 38.08 3.85
724 1959 0.948816 TGGGGATATGGGAGAGACCA 59.051 55.000 0.00 0.00 46.24 4.02
725 1960 1.296832 TGGGGATATGGGAGAGACCAA 59.703 52.381 0.00 0.00 45.13 3.67
726 1961 1.700186 GGGGATATGGGAGAGACCAAC 59.300 57.143 0.00 0.00 45.13 3.77
727 1962 2.695585 GGGATATGGGAGAGACCAACT 58.304 52.381 0.00 0.00 45.13 3.16
728 1963 3.049344 GGGATATGGGAGAGACCAACTT 58.951 50.000 0.00 0.00 45.13 2.66
729 1964 3.459969 GGGATATGGGAGAGACCAACTTT 59.540 47.826 0.00 0.00 45.13 2.66
802 2044 1.399089 GAAGTTAGCGAGCGAGAGAGT 59.601 52.381 0.00 0.00 0.00 3.24
803 2045 1.011333 AGTTAGCGAGCGAGAGAGTC 58.989 55.000 0.00 0.00 0.00 3.36
819 2061 0.838122 AGTCTACCTGTTGCTGGGCT 60.838 55.000 0.00 0.00 0.00 5.19
842 2084 4.221422 ACAGCACACACGCGGAGT 62.221 61.111 12.47 5.72 36.85 3.85
843 2085 3.406361 CAGCACACACGCGGAGTC 61.406 66.667 12.47 0.00 36.85 3.36
844 2086 3.911698 AGCACACACGCGGAGTCA 61.912 61.111 12.47 0.00 36.85 3.41
845 2087 2.738521 GCACACACGCGGAGTCAT 60.739 61.111 12.47 0.00 0.00 3.06
846 2088 2.730672 GCACACACGCGGAGTCATC 61.731 63.158 12.47 0.00 0.00 2.92
898 2149 2.537714 ATTCAGCCCGTCCTCCTCCT 62.538 60.000 0.00 0.00 0.00 3.69
899 2150 3.151022 CAGCCCGTCCTCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
900 2151 4.467107 AGCCCGTCCTCCTCCTCC 62.467 72.222 0.00 0.00 0.00 4.30
901 2152 4.779733 GCCCGTCCTCCTCCTCCA 62.780 72.222 0.00 0.00 0.00 3.86
902 2153 2.760385 CCCGTCCTCCTCCTCCAC 60.760 72.222 0.00 0.00 0.00 4.02
921 2172 2.034687 CATCCATCCCCATCCCGC 59.965 66.667 0.00 0.00 0.00 6.13
930 2181 3.138128 CCATCCCGCCGGTTTTCC 61.138 66.667 1.90 0.00 0.00 3.13
976 2227 3.479269 CGGCGGAAGACAGCGTTC 61.479 66.667 0.00 0.00 41.50 3.95
978 2229 2.430244 GCGGAAGACAGCGTTCGA 60.430 61.111 0.00 0.00 0.00 3.71
1083 2334 2.725008 CCGTCAGCTCCGATCTCC 59.275 66.667 3.94 0.00 0.00 3.71
1167 2418 7.938140 TGTCTTTATTCCTAACTGAATTGGG 57.062 36.000 0.00 0.00 40.34 4.12
1171 2422 2.507407 TCCTAACTGAATTGGGTGCC 57.493 50.000 0.00 0.00 39.92 5.01
1180 2441 0.773644 AATTGGGTGCCTGTCTGTCT 59.226 50.000 0.00 0.00 0.00 3.41
1185 2446 0.947244 GGTGCCTGTCTGTCTGTTTG 59.053 55.000 0.00 0.00 0.00 2.93
1186 2447 1.668419 GTGCCTGTCTGTCTGTTTGT 58.332 50.000 0.00 0.00 0.00 2.83
1187 2448 2.017049 GTGCCTGTCTGTCTGTTTGTT 58.983 47.619 0.00 0.00 0.00 2.83
1188 2449 2.423538 GTGCCTGTCTGTCTGTTTGTTT 59.576 45.455 0.00 0.00 0.00 2.83
1189 2450 3.088532 TGCCTGTCTGTCTGTTTGTTTT 58.911 40.909 0.00 0.00 0.00 2.43
1190 2451 4.095782 GTGCCTGTCTGTCTGTTTGTTTTA 59.904 41.667 0.00 0.00 0.00 1.52
1195 2456 7.043391 GCCTGTCTGTCTGTTTGTTTTATTTTC 60.043 37.037 0.00 0.00 0.00 2.29
1266 2543 2.106166 CCTCCTTAGATTGCCTCATGCT 59.894 50.000 0.00 0.00 42.00 3.79
1277 2554 2.159000 TGCCTCATGCTACTCATCAGTG 60.159 50.000 0.00 0.00 42.00 3.66
1299 2576 0.957395 CAGCATCACAGTGGTGGGAC 60.957 60.000 15.86 0.00 39.59 4.46
1318 2595 3.622163 GGACAGAATCAGCTCATGAACTG 59.378 47.826 18.25 18.25 44.61 3.16
1319 2596 3.607741 ACAGAATCAGCTCATGAACTGG 58.392 45.455 22.65 10.93 43.98 4.00
1320 2597 2.355132 CAGAATCAGCTCATGAACTGGC 59.645 50.000 22.65 10.95 42.53 4.85
1321 2598 2.239150 AGAATCAGCTCATGAACTGGCT 59.761 45.455 22.65 13.00 42.53 4.75
1341 2622 4.332268 GGCTAGATTCTTTGAGAGTTGCTG 59.668 45.833 0.00 0.00 0.00 4.41
1349 2630 0.681733 TGAGAGTTGCTGTCAGGACC 59.318 55.000 1.14 0.00 30.30 4.46
1359 2640 0.252696 TGTCAGGACCCACTAGCCAT 60.253 55.000 0.00 0.00 0.00 4.40
1369 2650 3.117512 ACCCACTAGCCATTTGGATAAGG 60.118 47.826 0.00 3.69 35.40 2.69
1407 2688 4.828387 CCAAGTGTATCTCCTCCTACTACC 59.172 50.000 0.00 0.00 0.00 3.18
1442 2723 5.409214 ACAATGTTAGTTACGGCGTATTTGT 59.591 36.000 21.66 16.57 0.00 2.83
1450 2731 5.695816 AGTTACGGCGTATTTGTGTTTCTAA 59.304 36.000 21.66 0.00 0.00 2.10
1451 2732 6.369615 AGTTACGGCGTATTTGTGTTTCTAAT 59.630 34.615 21.66 0.00 0.00 1.73
1452 2733 5.616488 ACGGCGTATTTGTGTTTCTAATT 57.384 34.783 12.58 0.00 0.00 1.40
1453 2734 5.624292 ACGGCGTATTTGTGTTTCTAATTC 58.376 37.500 12.58 0.00 0.00 2.17
1454 2735 5.410439 ACGGCGTATTTGTGTTTCTAATTCT 59.590 36.000 12.58 0.00 0.00 2.40
1455 2736 6.591062 ACGGCGTATTTGTGTTTCTAATTCTA 59.409 34.615 12.58 0.00 0.00 2.10
1480 2761 5.521010 TGAACGTCGTTCTTGTATTTCTGTT 59.479 36.000 31.76 0.00 42.39 3.16
1481 2762 5.978934 ACGTCGTTCTTGTATTTCTGTTT 57.021 34.783 0.00 0.00 0.00 2.83
1542 2823 1.238439 TTAGGTGTGCTTGCTGCTTC 58.762 50.000 0.00 0.00 43.37 3.86
1552 2838 2.477525 GCTTGCTGCTTCTCTATTGTGC 60.478 50.000 0.00 0.00 38.95 4.57
1776 3791 5.106237 CCTTTCAGAGCTCAATTTGGAGAAG 60.106 44.000 17.77 9.95 37.05 2.85
1785 3800 5.310409 TCAATTTGGAGAAGAAGGTCACT 57.690 39.130 0.00 0.00 0.00 3.41
1836 4395 4.294523 CGTGAGGGGATCGCAAAA 57.705 55.556 12.32 0.00 38.41 2.44
1885 4445 1.368268 TTCCCCTGGTCCTTTTGCCT 61.368 55.000 0.00 0.00 0.00 4.75
2238 9812 1.748879 GCGACCCTGCCAGCAATAA 60.749 57.895 0.00 0.00 0.00 1.40
2239 9813 1.103398 GCGACCCTGCCAGCAATAAT 61.103 55.000 0.00 0.00 0.00 1.28
2305 9882 1.067974 TGTACTGCATTACCGCGCTAT 59.932 47.619 11.29 0.00 33.35 2.97
2335 9912 7.596749 ATCGACAGTTAATCCAAAAGTGTAG 57.403 36.000 0.00 0.00 39.89 2.74
2340 9917 8.691661 ACAGTTAATCCAAAAGTGTAGTGAAT 57.308 30.769 0.00 0.00 38.43 2.57
2389 10951 3.407424 TCATCCAGAACAGGTGAGTTG 57.593 47.619 0.00 0.00 0.00 3.16
2390 10952 2.038952 TCATCCAGAACAGGTGAGTTGG 59.961 50.000 0.00 0.00 0.00 3.77
2391 10953 1.507140 TCCAGAACAGGTGAGTTGGT 58.493 50.000 0.00 0.00 0.00 3.67
2392 10954 2.684943 TCCAGAACAGGTGAGTTGGTA 58.315 47.619 0.00 0.00 0.00 3.25
2393 10955 2.367567 TCCAGAACAGGTGAGTTGGTAC 59.632 50.000 0.00 0.00 0.00 3.34
2394 10956 2.104111 CCAGAACAGGTGAGTTGGTACA 59.896 50.000 0.00 0.00 0.00 2.90
2469 11034 1.985473 TCCTGCTCACAAACATGCTT 58.015 45.000 0.00 0.00 0.00 3.91
2525 11098 7.192913 TCAAATGTACAACAAAACTACAGCAG 58.807 34.615 0.00 0.00 0.00 4.24
2555 11129 2.771089 CAGGTAGCAGCAACTCAAAGA 58.229 47.619 0.00 0.00 0.00 2.52
2565 11139 2.030451 GCAACTCAAAGAAGCCTTCAGG 60.030 50.000 7.29 0.00 38.53 3.86
2630 11204 7.168972 CGCTCATCTCTTCTCTTTTTATACCAG 59.831 40.741 0.00 0.00 0.00 4.00
2693 11271 2.807045 GACGACTCTGCACCAGCG 60.807 66.667 0.00 0.00 46.23 5.18
2762 11343 0.811616 AACCGCCTTGCTCGATGATC 60.812 55.000 0.00 0.00 0.00 2.92
2816 11397 2.954868 GCGACATACGACAGCCCG 60.955 66.667 0.00 0.00 45.77 6.13
3136 11725 0.665835 ATGTCTCTCAGATCGGCGAC 59.334 55.000 13.76 6.55 0.00 5.19
3166 11755 5.220381 TCGACGGAGAAATGATATGTTAGC 58.780 41.667 0.00 0.00 0.00 3.09
3167 11756 4.982295 CGACGGAGAAATGATATGTTAGCA 59.018 41.667 0.00 0.00 0.00 3.49
3185 11774 8.060020 TGTTAGCATTTGAATTTTGAAGTTCG 57.940 30.769 0.00 0.00 0.00 3.95
3186 11775 7.168972 TGTTAGCATTTGAATTTTGAAGTTCGG 59.831 33.333 0.00 0.00 0.00 4.30
3187 11776 5.841810 AGCATTTGAATTTTGAAGTTCGGA 58.158 33.333 0.00 0.00 0.00 4.55
3188 11777 5.922544 AGCATTTGAATTTTGAAGTTCGGAG 59.077 36.000 0.00 0.00 0.00 4.63
3189 11778 5.691754 GCATTTGAATTTTGAAGTTCGGAGT 59.308 36.000 0.00 0.00 0.00 3.85
3190 11779 6.346040 GCATTTGAATTTTGAAGTTCGGAGTG 60.346 38.462 0.00 0.00 0.00 3.51
3191 11780 4.223320 TGAATTTTGAAGTTCGGAGTGC 57.777 40.909 0.00 0.00 0.00 4.40
3192 11781 3.629855 TGAATTTTGAAGTTCGGAGTGCA 59.370 39.130 0.00 0.00 0.00 4.57
3193 11782 4.097135 TGAATTTTGAAGTTCGGAGTGCAA 59.903 37.500 0.00 0.00 0.00 4.08
3194 11783 3.691049 TTTTGAAGTTCGGAGTGCAAG 57.309 42.857 0.00 0.00 0.00 4.01
3195 11784 2.325583 TTGAAGTTCGGAGTGCAAGT 57.674 45.000 0.00 0.00 0.00 3.16
3196 11785 2.325583 TGAAGTTCGGAGTGCAAGTT 57.674 45.000 0.00 0.00 0.00 2.66
3197 11786 2.639065 TGAAGTTCGGAGTGCAAGTTT 58.361 42.857 0.00 0.00 0.00 2.66
3198 11787 3.799366 TGAAGTTCGGAGTGCAAGTTTA 58.201 40.909 0.00 0.00 0.00 2.01
3199 11788 4.385825 TGAAGTTCGGAGTGCAAGTTTAT 58.614 39.130 0.00 0.00 0.00 1.40
3200 11789 4.819630 TGAAGTTCGGAGTGCAAGTTTATT 59.180 37.500 0.00 0.00 0.00 1.40
3201 11790 5.298276 TGAAGTTCGGAGTGCAAGTTTATTT 59.702 36.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.943705 TGCCTAAGTGGATTCAAGACATTC 59.056 41.667 0.00 0.00 38.35 2.67
116 117 1.210545 ACGTAACAGTTCACACGCGG 61.211 55.000 12.47 1.27 37.92 6.46
117 118 0.573521 AACGTAACAGTTCACACGCG 59.426 50.000 3.53 3.53 37.92 6.01
118 119 1.325338 ACAACGTAACAGTTCACACGC 59.675 47.619 6.95 0.00 37.92 5.34
126 127 4.453136 ACAGTTTGTCAACAACGTAACAGT 59.547 37.500 0.00 0.00 35.28 3.55
198 199 8.515473 TGTATAATCGAATGATGTTCGTAAGG 57.485 34.615 9.61 0.00 42.09 2.69
211 212 9.900710 CTGCTAACTAGACTTGTATAATCGAAT 57.099 33.333 0.00 0.00 0.00 3.34
212 213 7.861372 GCTGCTAACTAGACTTGTATAATCGAA 59.139 37.037 0.00 0.00 0.00 3.71
213 214 7.361127 GCTGCTAACTAGACTTGTATAATCGA 58.639 38.462 0.00 0.00 0.00 3.59
214 215 6.303496 CGCTGCTAACTAGACTTGTATAATCG 59.697 42.308 0.00 0.00 0.00 3.34
216 217 6.264744 TCCGCTGCTAACTAGACTTGTATAAT 59.735 38.462 0.00 0.00 0.00 1.28
235 236 0.926155 CTGACGAATCATGTCCGCTG 59.074 55.000 0.00 0.00 35.46 5.18
239 240 5.174035 CGTTATCTTCTGACGAATCATGTCC 59.826 44.000 0.00 0.00 39.05 4.02
246 247 3.448686 CCTGCGTTATCTTCTGACGAAT 58.551 45.455 0.00 0.00 39.05 3.34
251 252 1.568504 ACCCCTGCGTTATCTTCTGA 58.431 50.000 0.00 0.00 0.00 3.27
262 263 0.532862 CATTGGCTAGTACCCCTGCG 60.533 60.000 0.00 0.00 0.00 5.18
377 820 7.078228 CGTTCTAAGCTGTTCTTGCTAAATTT 58.922 34.615 0.00 0.00 40.22 1.82
391 834 3.304559 GCACACTATGACGTTCTAAGCTG 59.695 47.826 0.00 0.00 0.00 4.24
404 847 1.721389 CGCCGCTAATAGCACACTATG 59.279 52.381 13.15 0.00 42.58 2.23
452 895 3.815809 CCAACCTCTAAGTGTGGTTTCA 58.184 45.455 0.00 0.00 46.72 2.69
468 911 1.035139 CTATCATTGCCAGGCCAACC 58.965 55.000 9.64 0.00 0.00 3.77
513 956 5.023533 TCGCTATCTTGCTTGGATAGTTT 57.976 39.130 16.38 0.00 42.52 2.66
537 1772 2.139118 GCTTGCTTGACGACTTTCTCT 58.861 47.619 0.00 0.00 0.00 3.10
538 1773 1.867233 TGCTTGCTTGACGACTTTCTC 59.133 47.619 0.00 0.00 0.00 2.87
539 1774 1.953559 TGCTTGCTTGACGACTTTCT 58.046 45.000 0.00 0.00 0.00 2.52
540 1775 2.031682 ACATGCTTGCTTGACGACTTTC 60.032 45.455 14.07 0.00 0.00 2.62
541 1776 1.949525 ACATGCTTGCTTGACGACTTT 59.050 42.857 14.07 0.00 0.00 2.66
542 1777 1.597742 ACATGCTTGCTTGACGACTT 58.402 45.000 14.07 0.00 0.00 3.01
543 1778 1.532868 GAACATGCTTGCTTGACGACT 59.467 47.619 14.07 0.00 0.00 4.18
544 1779 1.532868 AGAACATGCTTGCTTGACGAC 59.467 47.619 14.07 0.00 0.00 4.34
545 1780 1.532437 CAGAACATGCTTGCTTGACGA 59.468 47.619 14.07 0.00 0.00 4.20
546 1781 1.532437 TCAGAACATGCTTGCTTGACG 59.468 47.619 14.07 0.00 0.00 4.35
547 1782 2.351157 GGTCAGAACATGCTTGCTTGAC 60.351 50.000 14.07 16.65 33.47 3.18
548 1783 1.881973 GGTCAGAACATGCTTGCTTGA 59.118 47.619 14.07 0.00 0.00 3.02
549 1784 1.610038 TGGTCAGAACATGCTTGCTTG 59.390 47.619 6.90 6.90 0.00 4.01
550 1785 1.884579 CTGGTCAGAACATGCTTGCTT 59.115 47.619 0.00 0.00 0.00 3.91
551 1786 1.531423 CTGGTCAGAACATGCTTGCT 58.469 50.000 0.00 0.00 0.00 3.91
552 1787 0.524862 CCTGGTCAGAACATGCTTGC 59.475 55.000 0.00 0.00 0.00 4.01
553 1788 0.524862 GCCTGGTCAGAACATGCTTG 59.475 55.000 8.40 0.00 0.00 4.01
554 1789 0.403271 AGCCTGGTCAGAACATGCTT 59.597 50.000 12.20 0.00 36.61 3.91
555 1790 1.279496 TAGCCTGGTCAGAACATGCT 58.721 50.000 20.56 20.56 41.57 3.79
556 1791 2.113860 TTAGCCTGGTCAGAACATGC 57.886 50.000 7.61 7.61 0.00 4.06
557 1792 4.460382 ACAAATTAGCCTGGTCAGAACATG 59.540 41.667 0.00 0.00 0.00 3.21
558 1793 4.666512 ACAAATTAGCCTGGTCAGAACAT 58.333 39.130 0.00 0.00 0.00 2.71
559 1794 4.072131 GACAAATTAGCCTGGTCAGAACA 58.928 43.478 0.00 0.00 0.00 3.18
560 1795 4.072131 TGACAAATTAGCCTGGTCAGAAC 58.928 43.478 0.00 0.00 33.88 3.01
561 1796 4.365514 TGACAAATTAGCCTGGTCAGAA 57.634 40.909 0.00 0.00 33.88 3.02
562 1797 4.574674 ATGACAAATTAGCCTGGTCAGA 57.425 40.909 0.00 0.00 41.27 3.27
563 1798 4.946157 AGAATGACAAATTAGCCTGGTCAG 59.054 41.667 0.00 0.00 41.27 3.51
564 1799 4.701651 CAGAATGACAAATTAGCCTGGTCA 59.298 41.667 0.00 0.00 42.07 4.02
565 1800 4.943705 TCAGAATGACAAATTAGCCTGGTC 59.056 41.667 0.00 0.00 42.56 4.02
566 1801 4.922206 TCAGAATGACAAATTAGCCTGGT 58.078 39.130 0.00 0.00 42.56 4.00
581 1816 2.101415 TCATGGAGTAGCGGTCAGAATG 59.899 50.000 0.00 0.00 37.54 2.67
582 1817 2.363680 CTCATGGAGTAGCGGTCAGAAT 59.636 50.000 0.00 0.00 0.00 2.40
583 1818 1.751351 CTCATGGAGTAGCGGTCAGAA 59.249 52.381 0.00 0.00 0.00 3.02
584 1819 1.064685 TCTCATGGAGTAGCGGTCAGA 60.065 52.381 0.00 0.00 0.00 3.27
585 1820 1.336440 CTCTCATGGAGTAGCGGTCAG 59.664 57.143 0.00 0.00 37.30 3.51
586 1821 1.064685 TCTCTCATGGAGTAGCGGTCA 60.065 52.381 9.98 0.00 42.40 4.02
587 1822 1.681538 TCTCTCATGGAGTAGCGGTC 58.318 55.000 9.98 0.00 42.40 4.79
588 1823 2.028130 CTTCTCTCATGGAGTAGCGGT 58.972 52.381 9.98 0.00 42.40 5.68
589 1824 1.339610 CCTTCTCTCATGGAGTAGCGG 59.660 57.143 9.98 4.74 42.40 5.52
590 1825 2.028130 ACCTTCTCTCATGGAGTAGCG 58.972 52.381 9.98 7.45 42.40 4.26
591 1826 2.102252 CCACCTTCTCTCATGGAGTAGC 59.898 54.545 9.98 0.00 42.40 3.58
592 1827 2.697751 CCCACCTTCTCTCATGGAGTAG 59.302 54.545 9.98 9.69 42.40 2.57
593 1828 2.044492 ACCCACCTTCTCTCATGGAGTA 59.956 50.000 9.98 2.07 42.40 2.59
594 1829 1.203364 ACCCACCTTCTCTCATGGAGT 60.203 52.381 9.98 0.00 42.40 3.85
595 1830 1.577736 ACCCACCTTCTCTCATGGAG 58.422 55.000 5.18 5.18 43.12 3.86
596 1831 2.225522 TGTACCCACCTTCTCTCATGGA 60.226 50.000 0.00 0.00 33.80 3.41
597 1832 2.187958 TGTACCCACCTTCTCTCATGG 58.812 52.381 0.00 0.00 0.00 3.66
598 1833 3.981071 TTGTACCCACCTTCTCTCATG 57.019 47.619 0.00 0.00 0.00 3.07
599 1834 3.910627 AGTTTGTACCCACCTTCTCTCAT 59.089 43.478 0.00 0.00 0.00 2.90
600 1835 3.314693 AGTTTGTACCCACCTTCTCTCA 58.685 45.455 0.00 0.00 0.00 3.27
601 1836 3.323979 TGAGTTTGTACCCACCTTCTCTC 59.676 47.826 0.00 0.00 0.00 3.20
602 1837 3.071167 GTGAGTTTGTACCCACCTTCTCT 59.929 47.826 0.00 0.00 0.00 3.10
603 1838 3.400255 GTGAGTTTGTACCCACCTTCTC 58.600 50.000 0.00 0.00 0.00 2.87
604 1839 2.105993 GGTGAGTTTGTACCCACCTTCT 59.894 50.000 0.00 0.00 44.13 2.85
605 1840 2.501261 GGTGAGTTTGTACCCACCTTC 58.499 52.381 0.00 0.00 44.13 3.46
606 1841 2.651382 GGTGAGTTTGTACCCACCTT 57.349 50.000 0.00 0.00 44.13 3.50
612 1847 2.107726 AGAAAGGGGGTGAGTTTGTACC 59.892 50.000 0.00 0.00 36.21 3.34
613 1848 3.503800 AGAAAGGGGGTGAGTTTGTAC 57.496 47.619 0.00 0.00 0.00 2.90
614 1849 4.079672 TCAAAGAAAGGGGGTGAGTTTGTA 60.080 41.667 0.00 0.00 0.00 2.41
615 1850 3.031013 CAAAGAAAGGGGGTGAGTTTGT 58.969 45.455 0.00 0.00 0.00 2.83
616 1851 3.295973 TCAAAGAAAGGGGGTGAGTTTG 58.704 45.455 0.00 0.00 0.00 2.93
617 1852 3.680777 TCAAAGAAAGGGGGTGAGTTT 57.319 42.857 0.00 0.00 0.00 2.66
618 1853 3.500471 GGATCAAAGAAAGGGGGTGAGTT 60.500 47.826 0.00 0.00 0.00 3.01
619 1854 2.041755 GGATCAAAGAAAGGGGGTGAGT 59.958 50.000 0.00 0.00 0.00 3.41
620 1855 2.041620 TGGATCAAAGAAAGGGGGTGAG 59.958 50.000 0.00 0.00 0.00 3.51
621 1856 2.041620 CTGGATCAAAGAAAGGGGGTGA 59.958 50.000 0.00 0.00 0.00 4.02
622 1857 2.225117 ACTGGATCAAAGAAAGGGGGTG 60.225 50.000 0.00 0.00 0.00 4.61
623 1858 2.073776 ACTGGATCAAAGAAAGGGGGT 58.926 47.619 0.00 0.00 0.00 4.95
624 1859 2.225117 ACACTGGATCAAAGAAAGGGGG 60.225 50.000 0.00 0.00 0.00 5.40
625 1860 3.160679 ACACTGGATCAAAGAAAGGGG 57.839 47.619 0.00 0.00 0.00 4.79
626 1861 3.507622 GGAACACTGGATCAAAGAAAGGG 59.492 47.826 0.00 0.00 0.00 3.95
627 1862 4.144297 TGGAACACTGGATCAAAGAAAGG 58.856 43.478 0.00 0.00 0.00 3.11
644 1879 2.486727 GGACCCGGGAATAGAATGGAAC 60.487 54.545 32.02 1.58 0.00 3.62
645 1880 1.772453 GGACCCGGGAATAGAATGGAA 59.228 52.381 32.02 0.00 0.00 3.53
646 1881 1.430992 GGACCCGGGAATAGAATGGA 58.569 55.000 32.02 0.00 0.00 3.41
647 1882 0.034896 CGGACCCGGGAATAGAATGG 59.965 60.000 32.02 1.15 35.56 3.16
648 1883 0.602905 GCGGACCCGGGAATAGAATG 60.603 60.000 32.02 8.64 40.19 2.67
649 1884 0.763223 AGCGGACCCGGGAATAGAAT 60.763 55.000 32.02 0.82 40.19 2.40
650 1885 0.979187 AAGCGGACCCGGGAATAGAA 60.979 55.000 32.02 0.00 40.19 2.10
651 1886 0.106066 TAAGCGGACCCGGGAATAGA 60.106 55.000 32.02 2.42 40.19 1.98
652 1887 0.033090 GTAAGCGGACCCGGGAATAG 59.967 60.000 32.02 16.35 40.19 1.73
653 1888 0.397535 AGTAAGCGGACCCGGGAATA 60.398 55.000 32.02 7.52 40.19 1.75
654 1889 0.397535 TAGTAAGCGGACCCGGGAAT 60.398 55.000 32.02 4.94 40.19 3.01
655 1890 0.614415 TTAGTAAGCGGACCCGGGAA 60.614 55.000 32.02 3.07 40.19 3.97
656 1891 0.397535 ATTAGTAAGCGGACCCGGGA 60.398 55.000 32.02 0.00 40.19 5.14
657 1892 1.000171 GTATTAGTAAGCGGACCCGGG 60.000 57.143 22.25 22.25 40.19 5.73
658 1893 1.682854 TGTATTAGTAAGCGGACCCGG 59.317 52.381 10.70 0.00 40.19 5.73
659 1894 2.620115 TCTGTATTAGTAAGCGGACCCG 59.380 50.000 3.73 3.73 43.09 5.28
660 1895 3.887716 TCTCTGTATTAGTAAGCGGACCC 59.112 47.826 0.00 0.00 0.00 4.46
661 1896 4.023021 CCTCTCTGTATTAGTAAGCGGACC 60.023 50.000 0.00 0.00 0.00 4.46
662 1897 4.023021 CCCTCTCTGTATTAGTAAGCGGAC 60.023 50.000 0.00 0.00 0.00 4.79
663 1898 4.142790 CCCTCTCTGTATTAGTAAGCGGA 58.857 47.826 0.00 0.00 0.00 5.54
664 1899 3.890147 ACCCTCTCTGTATTAGTAAGCGG 59.110 47.826 0.00 0.00 0.00 5.52
665 1900 5.764192 AGTACCCTCTCTGTATTAGTAAGCG 59.236 44.000 0.00 0.00 0.00 4.68
666 1901 6.771749 TCAGTACCCTCTCTGTATTAGTAAGC 59.228 42.308 0.00 0.00 33.89 3.09
667 1902 8.749026 TTCAGTACCCTCTCTGTATTAGTAAG 57.251 38.462 0.00 0.00 33.89 2.34
668 1903 9.132923 CATTCAGTACCCTCTCTGTATTAGTAA 57.867 37.037 0.00 0.00 33.89 2.24
669 1904 8.500238 TCATTCAGTACCCTCTCTGTATTAGTA 58.500 37.037 0.00 0.00 33.89 1.82
670 1905 7.355101 TCATTCAGTACCCTCTCTGTATTAGT 58.645 38.462 0.00 0.00 33.89 2.24
671 1906 7.825331 TCATTCAGTACCCTCTCTGTATTAG 57.175 40.000 0.00 0.00 33.89 1.73
672 1907 7.175119 CGATCATTCAGTACCCTCTCTGTATTA 59.825 40.741 0.00 0.00 33.89 0.98
673 1908 6.015856 CGATCATTCAGTACCCTCTCTGTATT 60.016 42.308 0.00 0.00 33.89 1.89
674 1909 5.475220 CGATCATTCAGTACCCTCTCTGTAT 59.525 44.000 0.00 0.00 33.89 2.29
675 1910 4.822350 CGATCATTCAGTACCCTCTCTGTA 59.178 45.833 0.00 0.00 33.89 2.74
676 1911 3.634448 CGATCATTCAGTACCCTCTCTGT 59.366 47.826 0.00 0.00 33.89 3.41
677 1912 3.551863 GCGATCATTCAGTACCCTCTCTG 60.552 52.174 0.00 0.00 0.00 3.35
678 1913 2.625790 GCGATCATTCAGTACCCTCTCT 59.374 50.000 0.00 0.00 0.00 3.10
679 1914 2.625790 AGCGATCATTCAGTACCCTCTC 59.374 50.000 0.00 0.00 0.00 3.20
680 1915 2.363680 CAGCGATCATTCAGTACCCTCT 59.636 50.000 0.00 0.00 0.00 3.69
681 1916 2.546795 CCAGCGATCATTCAGTACCCTC 60.547 54.545 0.00 0.00 0.00 4.30
682 1917 1.414181 CCAGCGATCATTCAGTACCCT 59.586 52.381 0.00 0.00 0.00 4.34
683 1918 1.412710 TCCAGCGATCATTCAGTACCC 59.587 52.381 0.00 0.00 0.00 3.69
684 1919 2.890808 TCCAGCGATCATTCAGTACC 57.109 50.000 0.00 0.00 0.00 3.34
685 1920 3.496130 CCATTCCAGCGATCATTCAGTAC 59.504 47.826 0.00 0.00 0.00 2.73
686 1921 3.494924 CCCATTCCAGCGATCATTCAGTA 60.495 47.826 0.00 0.00 0.00 2.74
687 1922 2.569059 CCATTCCAGCGATCATTCAGT 58.431 47.619 0.00 0.00 0.00 3.41
688 1923 1.878088 CCCATTCCAGCGATCATTCAG 59.122 52.381 0.00 0.00 0.00 3.02
689 1924 1.477377 CCCCATTCCAGCGATCATTCA 60.477 52.381 0.00 0.00 0.00 2.57
690 1925 1.202806 TCCCCATTCCAGCGATCATTC 60.203 52.381 0.00 0.00 0.00 2.67
691 1926 0.846015 TCCCCATTCCAGCGATCATT 59.154 50.000 0.00 0.00 0.00 2.57
692 1927 1.070604 ATCCCCATTCCAGCGATCAT 58.929 50.000 0.00 0.00 0.00 2.45
693 1928 1.728323 TATCCCCATTCCAGCGATCA 58.272 50.000 0.00 0.00 0.00 2.92
694 1929 2.636830 CATATCCCCATTCCAGCGATC 58.363 52.381 0.00 0.00 0.00 3.69
695 1930 1.283029 CCATATCCCCATTCCAGCGAT 59.717 52.381 0.00 0.00 0.00 4.58
696 1931 0.692476 CCATATCCCCATTCCAGCGA 59.308 55.000 0.00 0.00 0.00 4.93
697 1932 0.322816 CCCATATCCCCATTCCAGCG 60.323 60.000 0.00 0.00 0.00 5.18
698 1933 1.005215 CTCCCATATCCCCATTCCAGC 59.995 57.143 0.00 0.00 0.00 4.85
699 1934 2.575279 CTCTCCCATATCCCCATTCCAG 59.425 54.545 0.00 0.00 0.00 3.86
700 1935 2.184339 TCTCTCCCATATCCCCATTCCA 59.816 50.000 0.00 0.00 0.00 3.53
701 1936 2.573915 GTCTCTCCCATATCCCCATTCC 59.426 54.545 0.00 0.00 0.00 3.01
702 1937 2.573915 GGTCTCTCCCATATCCCCATTC 59.426 54.545 0.00 0.00 0.00 2.67
703 1938 2.089408 TGGTCTCTCCCATATCCCCATT 60.089 50.000 0.00 0.00 34.77 3.16
704 1939 1.513991 TGGTCTCTCCCATATCCCCAT 59.486 52.381 0.00 0.00 34.77 4.00
705 1940 0.948816 TGGTCTCTCCCATATCCCCA 59.051 55.000 0.00 0.00 34.77 4.96
706 1941 1.700186 GTTGGTCTCTCCCATATCCCC 59.300 57.143 0.00 0.00 33.60 4.81
707 1942 2.695585 AGTTGGTCTCTCCCATATCCC 58.304 52.381 0.00 0.00 33.60 3.85
708 1943 4.779993 AAAGTTGGTCTCTCCCATATCC 57.220 45.455 0.00 0.00 33.60 2.59
743 1980 7.537649 GGGTGATTCAAAAAGACGAATCTAAAC 59.462 37.037 12.01 4.01 45.08 2.01
802 2044 1.679311 CAGCCCAGCAACAGGTAGA 59.321 57.895 0.00 0.00 0.00 2.59
803 2045 1.377725 CCAGCCCAGCAACAGGTAG 60.378 63.158 0.00 0.00 0.00 3.18
834 2076 0.949105 GTTGTTGGATGACTCCGCGT 60.949 55.000 4.92 0.00 45.37 6.01
848 2090 0.687427 AAGCAGTTGGGCCAGTTGTT 60.687 50.000 6.23 4.52 0.00 2.83
849 2091 1.076044 AAGCAGTTGGGCCAGTTGT 60.076 52.632 6.23 0.00 0.00 3.32
851 2093 1.531602 GGAAGCAGTTGGGCCAGTT 60.532 57.895 6.23 0.00 0.00 3.16
898 2149 1.438469 GATGGGGATGGATGAGTGGA 58.562 55.000 0.00 0.00 0.00 4.02
899 2150 0.403271 GGATGGGGATGGATGAGTGG 59.597 60.000 0.00 0.00 0.00 4.00
900 2151 0.403271 GGGATGGGGATGGATGAGTG 59.597 60.000 0.00 0.00 0.00 3.51
901 2152 1.130054 CGGGATGGGGATGGATGAGT 61.130 60.000 0.00 0.00 0.00 3.41
902 2153 1.681666 CGGGATGGGGATGGATGAG 59.318 63.158 0.00 0.00 0.00 2.90
966 2217 1.136984 GGTCGATCGAACGCTGTCT 59.863 57.895 21.31 0.00 0.00 3.41
992 2243 1.153686 GACTGCTGCATGCTCTCGA 60.154 57.895 20.33 0.00 43.37 4.04
1080 2331 3.151022 GCGGACTGGAGAGGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
1167 2418 1.668419 ACAAACAGACAGACAGGCAC 58.332 50.000 0.00 0.00 0.00 5.01
1171 2422 9.573133 AAGAAAATAAAACAAACAGACAGACAG 57.427 29.630 0.00 0.00 0.00 3.51
1217 2478 3.514309 TCCTAGAACAGGGTCTACAAAGC 59.486 47.826 0.00 0.00 45.58 3.51
1277 2554 1.376543 CCACCACTGTGATGCTGATC 58.623 55.000 9.86 0.00 45.76 2.92
1299 2576 2.355132 GCCAGTTCATGAGCTGATTCTG 59.645 50.000 33.54 20.37 41.41 3.02
1318 2595 4.332268 CAGCAACTCTCAAAGAATCTAGCC 59.668 45.833 0.00 0.00 0.00 3.93
1319 2596 4.934602 ACAGCAACTCTCAAAGAATCTAGC 59.065 41.667 0.00 0.00 0.00 3.42
1320 2597 6.162079 TGACAGCAACTCTCAAAGAATCTAG 58.838 40.000 0.00 0.00 0.00 2.43
1321 2598 6.101650 TGACAGCAACTCTCAAAGAATCTA 57.898 37.500 0.00 0.00 0.00 1.98
1341 2622 0.912486 AATGGCTAGTGGGTCCTGAC 59.088 55.000 0.00 0.00 0.00 3.51
1349 2630 3.490348 CCCTTATCCAAATGGCTAGTGG 58.510 50.000 0.00 0.00 34.44 4.00
1359 2640 0.923358 ATCCACCGCCCTTATCCAAA 59.077 50.000 0.00 0.00 0.00 3.28
1369 2650 2.616842 CACTTGGTATTTATCCACCGCC 59.383 50.000 0.00 0.00 37.66 6.13
1407 2688 5.536554 AACTAACATTGTGCGAGAAGATG 57.463 39.130 0.00 0.00 0.00 2.90
1442 2723 7.811236 AGAACGACGTTCATAGAATTAGAAACA 59.189 33.333 34.84 0.00 44.11 2.83
1450 2731 8.475331 AAATACAAGAACGACGTTCATAGAAT 57.525 30.769 34.84 20.91 44.11 2.40
1451 2732 7.811236 AGAAATACAAGAACGACGTTCATAGAA 59.189 33.333 34.84 19.84 44.11 2.10
1452 2733 7.272731 CAGAAATACAAGAACGACGTTCATAGA 59.727 37.037 34.84 20.94 44.11 1.98
1453 2734 7.061905 ACAGAAATACAAGAACGACGTTCATAG 59.938 37.037 34.84 26.27 44.11 2.23
1454 2735 6.864685 ACAGAAATACAAGAACGACGTTCATA 59.135 34.615 34.84 25.06 44.11 2.15
1455 2736 5.694910 ACAGAAATACAAGAACGACGTTCAT 59.305 36.000 34.84 24.82 44.11 2.57
1462 2743 7.414436 CCAAGAAAACAGAAATACAAGAACGA 58.586 34.615 0.00 0.00 0.00 3.85
1480 2761 3.397955 AGAACTAGGCCTTTCCCAAGAAA 59.602 43.478 12.58 0.00 39.70 2.52
1481 2762 2.986728 AGAACTAGGCCTTTCCCAAGAA 59.013 45.455 12.58 0.00 34.51 2.52
1552 2838 0.166597 CACAACAGTGGTGCTATGCG 59.833 55.000 8.45 0.00 0.00 4.73
1606 3612 3.684788 CCTCCGTCCTGTCATAAAAACAG 59.315 47.826 0.00 0.00 43.04 3.16
1614 3620 1.420138 ACAAAACCTCCGTCCTGTCAT 59.580 47.619 0.00 0.00 0.00 3.06
1836 4395 9.823647 CTTACTAGGTCTGTTTCAATCATGTAT 57.176 33.333 0.00 0.00 0.00 2.29
1885 4445 2.627945 GTGCACGGGACAAATCAGATA 58.372 47.619 0.00 0.00 0.00 1.98
1981 7912 8.643324 ACTAAAATGACAGATACACCTAGGATC 58.357 37.037 17.98 8.38 0.00 3.36
2047 8802 2.679837 CGTCTCTGTAAAGCATGCCAAT 59.320 45.455 15.66 3.14 0.00 3.16
2228 9802 7.327761 CAGCATGACTAATTAATTATTGCTGGC 59.672 37.037 28.90 20.23 39.69 4.85
2305 9882 8.842280 ACTTTTGGATTAACTGTCGATTAACAA 58.158 29.630 0.00 0.00 0.00 2.83
2335 9912 5.047377 TGCCATGTTTTTAGGAGGAATTCAC 60.047 40.000 7.93 0.58 0.00 3.18
2340 9917 7.732222 AAATATGCCATGTTTTTAGGAGGAA 57.268 32.000 0.00 0.00 0.00 3.36
2389 10951 5.537188 TGCCATGTTTTTGAAGATTGTACC 58.463 37.500 0.00 0.00 0.00 3.34
2390 10952 8.931385 ATATGCCATGTTTTTGAAGATTGTAC 57.069 30.769 0.00 0.00 0.00 2.90
2391 10953 9.941325 AAATATGCCATGTTTTTGAAGATTGTA 57.059 25.926 0.00 0.00 0.00 2.41
2392 10954 8.851541 AAATATGCCATGTTTTTGAAGATTGT 57.148 26.923 0.00 0.00 0.00 2.71
2439 11001 4.415881 TGTGAGCAGGAAGAACAAGTTA 57.584 40.909 0.00 0.00 0.00 2.24
2469 11034 5.164620 TGCTTCTCATGGTGATCTTTGTA 57.835 39.130 0.00 0.00 0.00 2.41
2555 11129 3.297134 TGAAGAAACACCTGAAGGCTT 57.703 42.857 0.00 0.00 39.32 4.35
2611 11185 6.183360 GCACTGCTGGTATAAAAAGAGAAGAG 60.183 42.308 0.00 0.00 0.00 2.85
2638 11216 3.214328 TGAAAAGTCTGAAGTTCCAGGC 58.786 45.455 0.00 0.00 38.97 4.85
2641 11219 6.356556 TCATTCTGAAAAGTCTGAAGTTCCA 58.643 36.000 0.00 0.00 42.75 3.53
2693 11271 3.937062 CCGTTCGCTTATGCCGCC 61.937 66.667 0.00 0.00 35.36 6.13
2696 11274 2.888534 TCGCCGTTCGCTTATGCC 60.889 61.111 0.00 0.00 38.27 4.40
2717 11295 3.013932 CCTGCTCCTCCAGGGCTT 61.014 66.667 0.26 0.00 46.93 4.35
2762 11343 1.153086 GCTCCTGGTGCACTATGGG 60.153 63.158 17.98 9.07 0.00 4.00
2804 11385 2.438975 TCGTCCGGGCTGTCGTAT 60.439 61.111 3.66 0.00 0.00 3.06
2816 11397 4.194720 ATCGCCGTGAGCTCGTCC 62.195 66.667 9.64 0.00 40.39 4.79
2849 11430 3.306364 CCAGGACCTACTTCAAGACACTG 60.306 52.174 0.00 0.00 0.00 3.66
2852 11433 2.632996 CACCAGGACCTACTTCAAGACA 59.367 50.000 0.00 0.00 0.00 3.41
3136 11725 2.159240 TCATTTCTCCGTCGATGACAGG 60.159 50.000 6.11 0.00 32.09 4.00
3166 11755 6.346040 GCACTCCGAACTTCAAAATTCAAATG 60.346 38.462 0.00 0.00 0.00 2.32
3167 11756 5.691754 GCACTCCGAACTTCAAAATTCAAAT 59.308 36.000 0.00 0.00 0.00 2.32
3172 11761 4.097892 ACTTGCACTCCGAACTTCAAAATT 59.902 37.500 0.00 0.00 0.00 1.82
3174 11763 3.013921 ACTTGCACTCCGAACTTCAAAA 58.986 40.909 0.00 0.00 0.00 2.44
3178 11767 5.358298 AATAAACTTGCACTCCGAACTTC 57.642 39.130 0.00 0.00 0.00 3.01
3179 11768 5.767816 AAATAAACTTGCACTCCGAACTT 57.232 34.783 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.